Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10021R-2 |
Symbol |
bowl |
Full Name |
brother of odd with entrails limited |
CG No |
CG10021 |
Old CG No |
CG10021 |
Synonyms |
Bowl, 17-29-5, Su(tor)2-1, l(2)c, org2, CG10021, bowl |
Accession No (Link to NCBI) |
NM_164556.1 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
pupal lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Cho Y, Lai CM, Lin KY, Hsu HJ. A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development. G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGGAGCCGGAAGTTTTCCATTT |
Primer Seq. 3' |
aatctagaggtaccACTTTGCCGCATGAAGAGCAC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GGAGCCGGAA GTTTTCCATT TCCACCAGGA GCCGCCGCCG CAGCTCTATT TCCACCTGGC
0061 CTGGGTCCTG GAATGCATGC CGGACTCGAT AGGCGCCTGC TACGTGCTCC TGGTCGGGCA
0121 TCGCGGCCTA AAAAACAGTT CATCTGCAAG TTCTGCAATC GACAATTCAC CAAGTCGTAC
0181 AATCTGCTCA TCCACGAGAG GACACACACG GACGAGCGGC CCTATTCCTG TGATATCTGC
0241 GGCAAGGCGT TCCGGCGACA GGATCACCTG AGGGATCACA GGTATATTCA CTCCAAGGAG
0301 AAACCCTTCA AATGCACGGA ATGCGGCAAG GGATTCTGCC AATCGAGAAC CTTGGCTGTC
0361 CACAAGATCC TGCACATGGA GGAATCACCC CACAAGTGCC CCGTCTGCAG TCGATCATTC
0421 AATCAGCGCT CCAACCTGAA GACCCATCTG CTCACCCACA CGGATCACAA GCCCTACGAG
0481 TGCTCTTCAT GCGGCAAAGT |
in silico PCR Fragment |
0001 GGAGCCGGAA GTTTTCCATT TCCACCAGGA GCCGCCGCCG CAGCTCTATT TCCACCTGGC
0061 CTGGGTCCTG GAATGCATGC CGGACTCGAT AGGCGCCTGC TACGTGCTCC TGGTCGGGCA
0121 TCGCGGCCTA AAAAACAGTT CATCTGCAAG TTCTGCAATC GACAATTCAC CAAGTCGTAC
0181 AATCTGCTCA TCCACGAGAG GACACACACG GACGAGCGGC CCTATTCCTG TGATATCTGC
0241 GGCAAGGCGT TCCGGCGACA GGATCACCTG AGGGATCACA GGTATATTCA CTCCAAGGAG
0301 AAACCCTTCA AATGCACGGA ATGCGGCAAG GGATTCTGCC AATCGAGAAC CTTGGCTGTC
0361 CACAAGATCC TGCACATGGA GGAATCACCC CACAAGTGCC CCGTCTGCAG TCGATCATTC
0421 AATCAGCGCT CCAACCTGAA GACCCATCTG CTCACCCACA CGGATCACAA GCCCTACGAG
0481 TGCTCTTCAT GCGGCAAAGT |
Assemble Data |
10021R-2.IR_full 1 GGAGCCGGAAGTTTTCCATTTCCACCAGGAGCCGCCGCCGCAGCTCTATTTCCACCTGGC 60
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10021R-2.in silico 1 GGAGCCGGAAGTTTTCCATTTCCACCAGGAGCCGCCGCCGCAGCTCTATTTCCACCTGGC 60
10021R-2.IR_full 61 CTGGGTCCTGGAATGCATGCCGGACTCGATAGGCGCCTGCTACGTGCTCCTGGTCGGGCA 120
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10021R-2.in silico 61 CTGGGTCCTGGAATGCATGCCGGACTCGATAGGCGCCTGCTACGTGCTCCTGGTCGGGCA 120
10021R-2.IR_full 121 TCGCGGCCTAAAAAACAGTTCATCTGCAAGTTCTGCAATCGACAATTCACCAAGTCGTAC 180
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10021R-2.in silico 121 TCGCGGCCTAAAAAACAGTTCATCTGCAAGTTCTGCAATCGACAATTCACCAAGTCGTAC 180
10021R-2.IR_full 181 AATCTGCTCATCCACGAGAGGACACACACGGACGAGCGGCCCTATTCCTGTGATATCTGC 240
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10021R-2.in silico 181 AATCTGCTCATCCACGAGAGGACACACACGGACGAGCGGCCCTATTCCTGTGATATCTGC 240
10021R-2.IR_full 241 GGCAAGGCGTTCCGGCGACAGGATCACCTGAGGGATCACAGGTATATTCACTCCAAGGAG 300
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10021R-2.in silico 241 GGCAAGGCGTTCCGGCGACAGGATCACCTGAGGGATCACAGGTATATTCACTCCAAGGAG 300
10021R-2.IR_full 301 AAACCCTTCAAATGCACGGAATGCGGCAAGGGATTCTGCCAATCGAGAACCTTGGCTGTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10021R-2.in silico 301 AAACCCTTCAAATGCACGGAATGCGGCAAGGGATTCTGCCAATCGAGAACCTTGGCTGTC 360
10021R-2.IR_full 361 CACAAGATCCTGCACATGGAGGAATCACCCCACAAGTGCCCCGTCTGCAGTCGATCATTC 420
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10021R-2.in silico 361 CACAAGATCCTGCACATGGAGGAATCACCCCACAAGTGCCCCGTCTGCAGTCGATCATTC 420
10021R-2.IR_full 421 AATCAGCGCTCCAACCTGAAGACCCATCTGCTCACCCACACGGATCACAAGCCCTACGAG 480
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10021R-2.in silico 421 AATCAGCGCTCCAACCTGAAGACCCATCTGCTCACCCACACGGATCACAAGCCCTACGAG 480
10021R-2.IR_full 481 TGCTCTTCATGCGGCAAAGT 500
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10021R-2.in silico 481 TGCTCTTCATGCGGCAAAGT 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
1 |
NM_164557.1 |
CG10021-RB, transcript variant B (bowl), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_057535.2 |
CG10021-RC, transcript variant C (bowl), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_164558.1 |
CG10021-RD, transcript variant D (bowl), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_164556.1 |
CG10021-RA, transcript variant A (bowl), mRNA |
3.11 |
15 |
43 |
94 |
107 |
NM_057534.3 |
CG3242-RA (sob), mRNA |
2.28 |
11 |
22 |
54 |
76 |
NM_164546.1 |
CG3851-RA (odd), mRNA |
0.41 |
2 |
2 |
4 |
14 |
NM_142622.1 |
CG4360-RA (CG4360), mRNA |
0.2 |
1 |
4 |
2 |
9 |
NM_139725.2 |
CG5249-RA (Blimp-1), mRNA |
0.2 |
1 |
3 |
26 |
34 |
NM_132218.1 |
CG2120-RA (CG2120), mRNA |
0.2 |
1 |
2 |
3 |
5 |
NM_136653.3 |
CG1884-RA, transcript variant A (Not1), mRNA |
0.2 |
1 |
2 |
3 |
5 |
NM_165678.2 |
CG1884-RB, transcript variant B (Not1), mRNA |
0 |
0 |
5 |
4 |
2 |
NM_164729.1 |
CG9100-RC, transcript variant C (Rab30), mRNA |
0 |
0 |
5 |
4 |
2 |
NM_164728.1 |
CG9100-RA, transcript variant A (Rab30), mRNA |
0 |
0 |
5 |
4 |
2 |
NM_135250.2 |
CG9100-RB, transcript variant B (Rab30), mRNA |
0 |
0 |
4 |
4 |
7 |
NM_140655.1 |
CG3849-RA, transcript variant A (Lasp), mRNA |
0 |
0 |
4 |
4 |
7 |
NM_168681.2 |
CG3849-RB, transcript variant B (Lasp), mRNA |
0 |
0 |
4 |
2 |
5 |
NM_142019.2 |
CG32473-RB, transcript variant B (CG32473), mRNA |
0 |
0 |
4 |
2 |
5 |
NM_169504.1 |
CG32473-RC, transcript variant C (CG32473), mRNA |
0 |
0 |
4 |
2 |
5 |
NM_169503.1 |
CG32473-RA, transcript variant A (CG32473), mRNA |
0 |
0 |
3 |
6 |
30 |
NM_134787.2 |
CG31670-RA (CG31670), mRNA |
0 |
0 |
3 |
6 |
4 |
NM_136928.3 |
CG8502-RA, transcript variant A (CG8502), mRNA |
0 |
0 |
3 |
6 |
4 |
NM_165892.2 |
CG8502-RC, transcript variant C (CG8502), mRNA |
0 |
0 |
2 |
4 |
18 |
NM_169411.2 |
CG6808-RA (CG6808), mRNA |
0 |
0 |
2 |
4 |
16 |
NM_141837.1 |
CG14711-RA (CG14711), mRNA |
0 |
0 |
2 |
4 |
3 |
NM_176061.2 |
CG10263-RD, transcript variant D (CG10263), mRNA |
0 |
0 |
2 |
4 |
3 |
NM_136149.2 |
CG10263-RA, transcript variant A (CG10263), mRNA |
0 |
0 |
2 |
4 |
3 |
NM_165312.1 |
CG10263-RC, transcript variant C (CG10263), mRNA |
0 |
0 |
2 |
3 |
7 |
NM_143156.2 |
CG4730-RA (CG4730), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_168711.2 |
CG6664-RD, transcript variant D (CG6664), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_168709.3 |
CG6664-RB, transcript variant B (CG6664), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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