Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10018R-2 |
Symbol |
Snm1 |
Full Name |
Snm1 |
CG No |
CG10018 |
Old CG No |
CG10018 |
Synonyms |
mus322, SNM1, CG10018, Snm1 |
Accession No (Link to NCBI) |
NM_141291.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgATGTAGAACCGGACCCAACGC |
Primer Seq. 3' |
aatctagaggtaccTTCACAGGGAGAGGCTATCGC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 ATGTAGAACC GGACCCAACG CCCACGATCG AGAACAGAAC GCCGGACAAG AAAAGAGCGG
0061 GAAGAACTAN GTGCGGCTTC CACGACAAAA AAGGTCCGAC CAAAGACGGA AGCATGTCCA
0121 ATCATAGCCA GCACTGCGTN TCAACGCGTT CCAGCAAGAA GACTCCGCTG CCAGGACAAA
0181 TGCGCATCGA TAGCTTTTTT ACAAGTGCCG TCAAGAACTA CAAAGTCAAG TCAAGTTCCT
0241 CTTGCAGGAA GGTGGATCCT CCGTTGGACA AGCGAAAGGT ATCTACCANA ggGNGCAAGC
0301 GcCTCTTCGA GGAGTCTACA ACAACCTCAT CTGcCTTTAC GGGCAAGCTG GATGcAAAGC
0361 CGTCAGAGAA GCGAGTGCAG CCTANTCGCC GTGCGAAAGG CAAGGAGAAC GCTAGCCTCT
0421 CCGAAGTGCA CGTAATTGAC CTGTGCTCCG AGGACGAGCA GACCATAAAA AGAAAGCCAT
0481 CCGCGATAGC CTCTCCCTGT GAA |
in silico PCR Fragment |
0001 ATGTAGAACC GGACCCAACG CCCACGATCG AGAACAGAAC GCCGGACAAG AAAAGAGCGG
0061 GAAGAACT-C GTGCGGCTTC CACGACAAAA AAGGTCCGAC CAAAGACGGA AGCATGTCCA
0121 ATCATAGCCA GCACTGCGT- TCAA-GCGTT CCAGCAAGAA GACTCCGCTG CCAGGACAAA
0181 TGCGCATCGA TAGCTTTTTT ACAAGTGCCG TCAAGAACTA CAAAGTCAAG TCAAGTTCCT
0241 CTTGCAGGAA GGTGGATCCT CCGTTGGACA AGCGAAAGGT ATCTACCAAA GGGCGCAAGC
0301 GCCTCTTCGA GGAGTCTACA ACAACCTCAT CTGCCTTTAC GGGCAAGCTG GATGCAAAGC
0361 CGTCAGAGAA GCGAGTGCAG CCTAGTCGCC GTGCGAAAGG CAAGGAGAAC GCTAGCCTCT
0421 CCGAAGTGCA CGTAATTGAC CTGTGCTCCG AGGACGAGCA GACCATAAAA AGAAAGCCAT
0481 CCGCGATAGC CTCTCCCTGT GAA |
Assemble Data |
10018R-2.IR_full 1 ATGTAGAACCGGACCCAACGCCCACGATCGAGAACAGAACGCCGGACAAGAAAAGAGCGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10018R-2.in silico 1 ATGTAGAACCGGACCCAACGCCCACGATCGAGAACAGAACGCCGGACAAGAAAAGAGCGG 60
10018R-2.IR_full 61 GAAGAACTANGTGCGGCTTCCACGACAAAAAAGGTCCGACCAAAGACGGAAGCATGTCCA 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
10018R-2.in silico 61 GAAGAACT-CGTGCGGCTTCCACGACAAAAAAGGTCCGACCAAAGACGGAAGCATGTCCA 120
10018R-2.IR_full 121 ATCATAGCCAGCACTGCGTNTCAACGCGTTCCAGCAAGAAGACTCCGCTGCCAGGACAAA 180
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
10018R-2.in silico 121 ATCATAGCCAGCACTGCGT-TCAA-GCGTTCCAGCAAGAAGACTCCGCTGCCAGGACAAA 180
10018R-2.IR_full 181 TGCGCATCGATAGCTTTTTTACAAGTGCCGTCAAGAACTACAAAGTCAAGTCAAGTTCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10018R-2.in silico 181 TGCGCATCGATAGCTTTTTTACAAGTGCCGTCAAGAACTACAAAGTCAAGTCAAGTTCCT 240
10018R-2.IR_full 241 CTTGCAGGAAGGTGGATCCTCCGTTGGACAAGCGAAAGGTATCTACCANAGGGNGCAAGC 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
10018R-2.in silico 241 CTTGCAGGAAGGTGGATCCTCCGTTGGACAAGCGAAAGGTATCTACCAAAGGGCGCAAGC 300
10018R-2.IR_full 301 GCCTCTTCGAGGAGTCTACAACAACCTCATCTGCCTTTACGGGCAAGCTGGATGCAAAGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10018R-2.in silico 301 GCCTCTTCGAGGAGTCTACAACAACCTCATCTGCCTTTACGGGCAAGCTGGATGCAAAGC 360
10018R-2.IR_full 361 CGTCAGAGAAGCGAGTGCAGCCTANTCGCCGTGCGAAAGGCAAGGAGAACGCTAGCCTCT 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
10018R-2.in silico 361 CGTCAGAGAAGCGAGTGCAGCCTAGTCGCCGTGCGAAAGGCAAGGAGAACGCTAGCCTCT 420
10018R-2.IR_full 421 CCGAAGTGCACGTAATTGACCTGTGCTCCGAGGACGAGCAGACCATAAAAAGAAAGCCAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10018R-2.in silico 421 CCGAAGTGCACGTAATTGACCTGTGCTCCGAGGACGAGCAGACCATAAAAAGAAAGCCAT 480
10018R-2.IR_full 481 CCGCGATAGCCTCTCCCTGTGAA 503
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10018R-2.in silico 481 CCGCGATAGCCTCTCCCTGTGAA 503
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_141291.2 |
CG10018-RA (Snm1), mRNA |
0 |
0 |
3 |
4 |
6 |
NM_135674.2 |
CG14937-RA (CG14937), mRNA |
0 |
0 |
3 |
4 |
4 |
NM_142494.2 |
CG7718-RA (CG7718), mRNA |
0 |
0 |
2 |
3 |
3 |
NM_141641.2 |
CG8149-RA (CG8149), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_168114.2 |
CG32423-RC, transcript variant C (alan-shepard), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_168112.1 |
CG32423-RB, transcript variant B (alan-shepard), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_168113.2 |
CG32423-RD, transcript variant D (alan-shepard), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_168111.3 |
CG32423-RA, transcript variant A (alan-shepard), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_142397.1 |
CG14318-RA (CG14318), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_165563.2 |
CG30383-RA (CG30383), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_132878.1 |
CG9216-RA, transcript variant A (CG9216), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_167653.1 |
CG3400-RE, transcript variant E (Pfrx), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_167655.1 |
CG3400-RH, transcript variant H (Pfrx), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_167652.1 |
CG3400-RD, transcript variant D (Pfrx), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_058103.2 |
CG3400-RG, transcript variant G (Pfrx), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_058104.4 |
CG3400-RB, transcript variant B (Pfrx), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_167656.1 |
CG3400-RI, transcript variant I (Pfrx), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_167651.1 |
CG3400-RA, transcript variant A (Pfrx), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_167654.1 |
CG3400-RF, transcript variant F (Pfrx), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_001007096.1 |
CG8742-RB, transcript variant B (Gyc76C), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_079441.3 |
CG8742-RA, transcript variant A (Gyc76C), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_001007095.1 |
CG8742-RC, transcript variant C (Gyc76C), mRNA |
0 |
0 |
0 |
6 |
3 |
NM_079150.2 |
CG13892-RA (Cypl), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_079393.2 |
CG4083-RA (Mo25), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_132430.2 |
CG11207-RA (feo), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_134832.2 |
CG15390-RA (CG15390), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_166466.2 |
CG10082-RA, transcript variant A (CG10082), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_079024.2 |
CG10246-RA (Cyp6a9), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_136798.1 |
CG30021-RA (skf), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_141283.2 |
CG12162-RA, transcript variant A (CG12162), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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