SNP Pos.

123

175

177

189

204

211

212

216

219

235

240

248

249

250

264

274

279

282

304

348

354

367

370

374

377

388

393

396

399

406

410

411

412

420

426

453

501

Strain number/Species/Symbol Standard sequence

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

G

G

1

k-aaa001

ananassae

AABBg1

A01_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

R

G

A01_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

G

G

2

k-aa609

ananassae

e pi;bri ru

B01_f

N

N

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

A

C

A

A

C

C

C

A

T

R

G

B01_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

A

C

A

A

C

C

C

A

T

G

G

3

k-aa611

ananassae

e se; bri ru

C01_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

R

G

C01_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

G

G

4

non opened stock

ananassae

Om(2C)+ Arc+

D01_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

R

G

D01_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

G

G

5

k-aa214

ananassae

ca

E01_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

R

G

E01_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

G

G

6

k-aa329

ananassae

px

F01_f

G

G

C

T

C

K

N

C

R

A

A

W

C

S

G

G

A

T

G

T

T

C

A

C

A

A

C

C

C

A

T

R

G

F01_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

A

C

A

A

C

C

C

A

T

G

G

7

k-aa607

ananassae

ca;px B5/B6

G01_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

R

G

G01_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

G

G

8

k-aa307

ananassae

bri pe stw

H01_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

R

G

H01_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

G

G

9

k-aa309

ananassae

bri pe stw px

A02_f

N

N

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

A

C

A

A

C

C

C

A

T

R

G

A02_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

A

C

A

A

C

C

C

A

T

G

G

10

not opened stock

ananassae

Om(2C)8 Arc

B02_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

R

G

B02_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

G

G

11

k-aaa020

ananassae

Tonga

C02_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

R

G

C02_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

G

G

12

k-aaa226

ananassae

TBU209

D02_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

R

G

E02_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

W

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

G

G

14

not opened stock

ananassae

L8-2

F02_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

C

C

A

G

G02_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

A

T

G

G

C

C

A

C

A

A

C

T

T

A

T

G

G

16

k-aa801

ananassae

ananassae-y-IM

H02_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

A

T

G

G

C

C

T

C

A

A

C

T

T

A

T

R

G

A03_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

G

G

18

k-aa115

ananassae

Om(1D)f[49]Bx[2]w[65]

B03_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

R

G

C03_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

A

C

A

A

C

C

C

A

T

G

G

20

k-aa235

ananassae

Pr

D03_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

R

G

E03_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

G

G

22

not opened stock

ananassae

ca Sb Arc

F03_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

R

G

G03_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

A

T

G

G

24

not opened stock

ananassae

bri pe stw Om(3F)

H03_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

A

C

A

A

C

C

C

A

T

R

G

A04_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

A

T

G

G

C

C

A

C

A

A

C

T

T

A

T

A

G

26

k-aaa222 or k-aaa255

ananassae

N87

B04_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

A

T

G

G

C

C

T

C

A

A

C

T

T

A

T

R

G

C04_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

C

C

A

G

28

k-aaa027

ananassae

OGS98-k1

D04_f

N

N

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

T

C

T

T

C

C

A

G

E04_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

C

C

A

G

30

not opened stock

ananassae

M28F20

F04_f

T

C

T

T

C

A

A

A

A

C

C

G

C

A

T

G

G

C

C

T

C

A

A

C

T

T

A

T

R

G

G04_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

T

A

C

T

T

C

C

A

G

32

k-aas003

parapallidosa

IRO21

H04_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

C

C

A

G

A05_r

C

T

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

C

T

T

C

A

A

C

T

T

A

T

A

G

34

k-aas010

parapallidosa

Lanyu24

B05_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

C

C

A

G

C05_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

C

C

A

G

36

k-aae006

pallidosa

TBU155

D05_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

R

G

E05_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

G

G

38

k-aa804

pallidosa

pallidosa--BR

F05_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

R

G

G05_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

C

C

A

G

40

k-aau001?

pallidosa-like

LAE345-BR

H05_f

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

C

C

T

G

T

C

C

T

A

A

A

C

T

T

C

C

A

G

A06_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

A

C

A

A

T

T

T

A

T

G

G

42

not available

pallidosa-like-WAU

WAU61

B06_f

N

N

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

C

C

C

T

C

T

T

C

A

A

C

T

T

A

T

A

G

C06_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

T

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

C

C

A

C

44

k-aat003

papuensis-like

WAU142

D06_f

N

N

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

A

T

R

G

E06_r

C

C

C

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

C

C

T

A

A

A

C

T

T

C

C

A

G

46

k-aat002

papuensis-like

AUS51

F06_f

N

N

T

G

G

C

T

C

T

T

C

A

A

A

A

C

C

G

G

A

T

G

T

T

C

T

C

A

A

C

T

T

C

C

A

G

G06_r

C

C

C

G

G

G

C

G

T

T

G

A

A

A

G

W

C

G

G

A

C

T

G

48

k-aab010

atripex

W192

H06_r

C

C

C

G

G

G

C

G

T

T

G

A

A

A

G

A

C

G

G

A

C

T

G

49

k-aad001

ochrogaster

A07_f

C

C

C

A

A

C

C

C

A

T

R

G

B07_r

C

C

C

G

G

G

C

G

T

A

G

C

A

A

G

A

C

C

G

G

C

51

k-aaf001

phaeopluera

C07_f

T

A

C

A

G

C07_r

C

C

C

G

G

G

C

G

T

A

G

A

A

A

G

A

C

C

G

G

C