Transcription Factor Profiling of Escherichia coli
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Release
Current Version
unknown
Show the consensus sequence
Input sequences
Transcription Factor:
select TF
ArcA
ArgP
ArgPArg
ArgPLys
ArgR
AscG
AsnC
BasR
BasRAcP
BetI
BetICholine
BtsR
CbpB
CecR
CitB
Cra
CraFruBP
CreBP
CRP
CRPnoncAMP
CsqR
CsuR
CusR
CusRAcP
CynR
CynRcyanate
CytR
Dan
DcuRP
DecR
DeoR
DeoT
DhaR
DicA
Dps
DsdC
DsdCSer
EbgR
EvgA
EvgAP
ExuR
Fis
FlhA
FlhAformate
FlhDC
FrlR
Fur
GalR
GgaR_ChIP
GusR
HcaR
Hfq
HipB
HNS
HNSHha
HprR
HU
IclR
IHF
IlvY
IlvYhydroxybutyrate
KdpE
KdpEP
LacI
LctR
LctRlactate
LeuO
LldR
LrhA
Lrp
Lrpleucine
MalI
MalImaltose
MarR
MarRsalicylate
Mlc
MlrA
MntR
MntRMn
ModE
ModEMo
MrlA
NadR
NadRNMN
NanR
NanRnana
NhaR
NhaRNa
NimR
NorR
NtrC
OmpR
OxyR
PdhR
PdhRpyr
PepA
PgrR
PhnF
PhoB
PlaR
PspF
PutA
PutAProline
PyrR
PyrRAcP
QseA
QseAPHBA
QseB
QseBP
RbsR
RbsRribose
RcdA
RcsB
RpiR
RpoD
RpoE
RpoF
RpoH
RpoN
RpoNNtrC
RpoS
RpoZ_ChIP
RspR
RutR
SdiA
SdiAA
SdiAF
SdiAK
SdiAOC
SfsA
SfsAmaltose
SlmA
SoxRDTT
SoxRFe
SoxSDTT
SoxSFe
SrlR
SrsR
StpA
TorR
TorRP
TreR
TreRtrehalose
UlaR
UlaRP
UvrY
UvrYP
uxuR
UxuRglucronate
XynR
YagI
YahA
YahAcdiGMP
YahB
YbaO
YbiH
YcaN
YcfQ
YciT
YdcN
YdfH
YeaM
YedW
YegW
YfaX
YfeR
YfgA
YfhH
YgfB
YgfI
YheR
YiaJ
YiaU
YidZ
YifA
YihW
YijO
YjgJ
YjiE
YkgA
YkgD
YneJ
YnfL
YpdB
YpdBP
YqhC
ZraR
Zur
ZurZn
Binding Intensity (%) >=
Probes :
BioProspector
1)
options
readme
motif width
number of times trying to find motif
number of top motifs to report
second motif block width for two-block motif
max gap between two motif blocks
min gap between two motif blocks
if two-block motif is palindrome
if only need to examine forward
if every sequence contains the motif
if want more degenerate sites
expected bases per motif site in the sequences(will use Bayes motif scoring, don't specify if unknown)
WebLogo
2)
options
Small sample correction
Antialias Bitmaps
color
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