#=GENOME_DIFF	1.0
#=CREATED	04:21:23 11 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9795_S46_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9795_S46_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9795_S46_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9795_S46_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9795_S46_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	546041793
#=CONVERTED-READS	1849409
#=INPUT-BASES	546156410
#=INPUT-READS	1849800
#=MAPPED-BASES	522600734
#=MAPPED-READS	1771248
SNP	1	228	NC_000913	38145	A
SNP	2	229	NC_000913	38163	A
SNP	3	230	NC_000913	42108	A
SNP	4	232	NC_000913	75070	T
SNP	5	233	NC_000913	81498	T
SNP	6	238	NC_000913	226027	T
SNP	7	240	NC_000913	246747	T
DEL	8	723,739	NC_000913	257908	776
SNP	9	241	NC_000913	260015	T
SNP	10	242	NC_000913	284535	G
SNP	11	243	NC_000913	299256	A
SNP	12	244	NC_000913	300585	A
SNP	13	245	NC_000913	300645	A
SNP	14	246	NC_000913	303911	T
SNP	15	247	NC_000913	305596	A
SNP	16	248	NC_000913	306474	T
SNP	17	249	NC_000913	313543	A
SNP	18	253	NC_000913	337418	A
SNP	19	254	NC_000913	342413	G
SNP	20	255	NC_000913	363362	T
DEL	21	724,740	NC_000913	402391	723
SNP	22	256	NC_000913	426428	T
SNP	23	257	NC_000913	429132	T
SNP	24	258	NC_000913	435272	T
SNP	25	259	NC_000913	446642	T
SNP	26	260	NC_000913	456645	T
SNP	27	261	NC_000913	458220	T
SNP	28	262	NC_000913	460036	T
SNP	29	263	NC_000913	466776	T
SNP	30	264	NC_000913	472585	T
SNP	31	265	NC_000913	474379	T
SUB	32	266,267	NC_000913	480295	2	AA
SNP	33	268	NC_000913	480686	T
SNP	34	269	NC_000913	487802	T
SNP	35	270	NC_000913	492215	T
SNP	36	271	NC_000913	496241	T
SNP	37	272	NC_000913	500069	T
SNP	38	273	NC_000913	500641	T
SNP	39	274	NC_000913	501193	A
SNP	40	275	NC_000913	508652	T
SNP	41	276	NC_000913	511602	A
SNP	42	277	NC_000913	512904	T
SNP	43	278	NC_000913	518704	T
SNP	44	279	NC_000913	518989	T
SNP	45	280	NC_000913	519280	T
SNP	46	345	NC_000913	606604	A
SNP	47	346	NC_000913	690948	A
SNP	48	347	NC_000913	700038	A
SNP	49	348	NC_000913	789597	T
SUB	50	349,350	NC_000913	809217	2	AG
SNP	51	353	NC_000913	891983	A
SNP	52	354	NC_000913	908760	T
SNP	53	355	NC_000913	968837	A
SNP	54	356	NC_000913	1005503	G
SNP	55	357	NC_000913	1040126	T
SNP	56	358	NC_000913	1061935	A
SUB	57	361,362	NC_000913	1111727	2	TT
SNP	58	363	NC_000913	1115233	T
SNP	59	364	NC_000913	1129324	T
SNP	60	365	NC_000913	1133668	T
SNP	61	366	NC_000913	1155389	T
SNP	62	367	NC_000913	1169836	G
SNP	63	368	NC_000913	1180426	A
SNP	64	369	NC_000913	1181285	T
SNP	65	370	NC_000913	1186294	A
SNP	66	371	NC_000913	1189296	T
SNP	67	372	NC_000913	1189980	G
SNP	68	373	NC_000913	1196220	T
SNP	69	374	NC_000913	1196232	T
SNP	70	375	NC_000913	1196245	C
SNP	71	376	NC_000913	1196247	G
SNP	72	386	NC_000913	1278991	T
MOB	73	762,763	NC_000913	1293268	IS5	-1	4
SNP	74	388	NC_000913	1301998	G
SNP	75	389	NC_000913	1302268	T
SNP	76	391	NC_000913	1337394	G
SNP	77	392	NC_000913	1357202	T
SNP	78	393	NC_000913	1358859	C
SNP	79	394	NC_000913	1397802	A
MOB	80	767,768	NC_000913	1431062	IS2	-1	5
SNP	81	513	NC_000913	1479799	T
SNP	82	514	NC_000913	1553310	T
SNP	83	515	NC_000913	1600234	T
SNP	84	516	NC_000913	1601098	A
SNP	85	517	NC_000913	1601103	T
SNP	86	519	NC_000913	1632712	G
SNP	87	520	NC_000913	1632735	A
SNP	88	548	NC_000913	1641002	C
SNP	89	549	NC_000913	1643679	T
SNP	90	550	NC_000913	1649971	T
SNP	91	551	NC_000913	1652331	C
SNP	92	553	NC_000913	1702757	T
DEL	93	727,770	NC_000913	1757529	63
DEL	94	554	NC_000913	1793377	1
SNP	95	556	NC_000913	1861311	T
SNP	96	557	NC_000913	1894839	C
SNP	97	560	NC_000913	1964254	C
SNP	98	561	NC_000913	2040433	A
DEL	99	772	NC_000913	2092996	4	repeat_length=4	repeat_new_copies=3	repeat_ref_copies=4	repeat_seq=TGGC
SNP	100	564	NC_000913	2099525	T
DEL	101	565	NC_000913	2111259	1
SNP	102	566	NC_000913	2155880	T
DEL	103	567,568	NC_000913	2173363	2
SNP	104	569	NC_000913	2173448	T
SNP	105	570	NC_000913	2224169	G
SNP	106	571	NC_000913	2237105	T
MOB	107	773,774	NC_000913	2237684	IS5	1	4
SUB	108	572,573	NC_000913	2264460	2	AT
SNP	109	574	NC_000913	2319078	A
DEL	110	575	NC_000913	2360550	1
SNP	111	576	NC_000913	2392233	G
SNP	112	577	NC_000913	2423891	T
SNP	113	579	NC_000913	2443447	A
SNP	114	580	NC_000913	2473392	A
INS	115	581	NC_000913	2473397	T
SNP	116	584	NC_000913	2510609	T
DEL	117	729,778	NC_000913	2558699	6790
SNP	118	585	NC_000913	2587112	T
SNP	119	586	NC_000913	2630852	A
SNP	120	588	NC_000913	2732992	A
SNP	121	589	NC_000913	2745565	T
SNP	122	590	NC_000913	2804133	T
DEL	123	591	NC_000913	2814459	1
SNP	124	592	NC_000913	2814461	T
SNP	125	595	NC_000913	2867455	A
SNP	126	596	NC_000913	2871153	G
MOB	127	784,785	NC_000913	2913392	IS2	-1	5
SNP	128	597	NC_000913	2920153	A
SNP	129	598	NC_000913	2954158	A
SNP	130	599	NC_000913	2955385	T
SNP	131	601	NC_000913	3010122	A
SNP	132	602	NC_000913	3019751	T
SNP	133	606	NC_000913	3063827	T
SNP	134	607	NC_000913	3076531	A
SNP	135	608	NC_000913	3127435	T
SNP	136	609	NC_000913	3175234	T
SNP	137	611	NC_000913	3208066	A
SNP	138	612	NC_000913	3220571	A
SNP	139	613	NC_000913	3221786	T
SNP	140	615	NC_000913	3230486	T
SNP	141	616	NC_000913	3243050	A
DEL	142	730,786	NC_000913	3258933	5	repeat_length=5	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=ACGGC
SNP	143	618	NC_000913	3329743	T
DEL	144	731,775	NC_000913	3349206	16350	mediated=IS5
SNP	145	619	NC_000913	3388041	G
SNP	146	621	NC_000913	3432105	T
SNP	147	623	NC_000913	3443961	A
SNP	148	624	NC_000913	3443980	A
SNP	149	625	NC_000913	3452022	A
SNP	150	626	NC_000913	3452218	A
SNP	151	627	NC_000913	3457378	T
SNP	152	628	NC_000913	3458245	C
SNP	153	629	NC_000913	3474425	G
SNP	154	630	NC_000913	3492293	G
SNP	155	631	NC_000913	3506393	C
SUB	156	632,633	NC_000913	3560455	1	TG
SNP	157	634	NC_000913	3562125	T
SNP	158	635	NC_000913	3563255	T
SNP	159	636	NC_000913	3586657	A
SNP	160	637	NC_000913	3626067	T
SNP	161	638	NC_000913	3638300	A
SNP	162	639	NC_000913	3682515	T
SNP	163	640	NC_000913	3692114	T
SNP	164	641	NC_000913	3707947	A
SNP	165	643	NC_000913	3725176	G
SUB	166	644,645	NC_000913	3729955	2	AA
MOB	167	789,790	NC_000913	3731420	IS1	-1	9
SNP	168	647	NC_000913	3769447	A
DEL	169	648,649	NC_000913	3773040	2	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=6	repeat_seq=G
SNP	170	650	NC_000913	3783983	A
INS	171	651	NC_000913	3815883	C
INS	172	791	NC_000913	3822651	CAGGAT	repeat_length=6	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CAGGAT
SNP	173	652	NC_000913	3823162	T
SNP	174	653	NC_000913	3835828	A
SNP	175	654	NC_000913	3837106	A
SNP	176	655	NC_000913	3837362	A
SNP	177	659	NC_000913	3889668	T
SNP	178	660	NC_000913	3894233	T
SNP	179	662	NC_000913	3896888	T
SNP	180	663	NC_000913	3899297	T
SNP	181	664	NC_000913	3907444	A
MOB	182	792,793	NC_000913	3931171	IS4	-1	12
SNP	183	667	NC_000913	3953043	G
SNP	184	668	NC_000913	3993531	C
SNP	185	669	NC_000913	4057150	T
SNP	186	670	NC_000913	4058473	A
SNP	187	671	NC_000913	4058823	A
SNP	188	672	NC_000913	4085516	A
SNP	189	673	NC_000913	4110415	T
SNP	190	674	NC_000913	4116753	T
SNP	191	675	NC_000913	4117060	T
SNP	192	676	NC_000913	4117270	A
MOB	193	769,794	NC_000913	4117984	IS30	1	2
SNP	194	677	NC_000913	4119767	T
SNP	195	680	NC_000913	4179329	A
SNP	196	683	NC_000913	4223638	C
SNP	197	684	NC_000913	4242914	T
SNP	198	685	NC_000913	4259611	A
SNP	199	686	NC_000913	4270596	A
SNP	200	687	NC_000913	4278574	A
INS	201	689,690	NC_000913	4296381	GC
SNP	202	691	NC_000913	4327494	A
SNP	203	692	NC_000913	4359314	A
SNP	204	694	NC_000913	4392997	A
SNP	205	695	NC_000913	4393552	A
SNP	206	696	NC_000913	4396373	T
SNP	207	697	NC_000913	4396772	C
SNP	208	698	NC_000913	4400119	A
SNP	209	699	NC_000913	4413535	A
SNP	210	700	NC_000913	4416177	T
SNP	211	701	NC_000913	4420399	A
SNP	212	702	NC_000913	4425688	A
SNP	213	703	NC_000913	4425696	A
SUB	214	705,706	NC_000913	4436956	2	TT
SNP	215	707	NC_000913	4472406	T
SNP	216	708	NC_000913	4486636	A
SNP	217	709	NC_000913	4501834	T
SNP	218	710	NC_000913	4510238	G
SNP	219	711	NC_000913	4532409	G
SNP	220	712	NC_000913	4546601	T
SNP	221	713	NC_000913	4578548	A
SNP	222	715	NC_000913	4604109	T
SNP	223	717	NC_000913	4615345	T
SNP	224	718	NC_000913	4631788	A
SNP	225	719	NC_000913	4636925	C
SNP	226	720	NC_000913	4638240	A
RA	227	.	NC_000913	12152	0	G	T	bias_e_value=1.74204	bias_p_value=3.75307e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.7	fisher_strand_p_value=2.00427e-08	frequency=2.705e-01	ks_quality_p_value=1	major_base=G	major_cov=44/45	major_frequency=7.295e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.705e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=44/45	total_cov=44/78
RA	228	.	NC_000913	38145	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=422.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=55/64	major_frequency=9.917e-01	minor_base=G	minor_cov=0/1	new_cov=55/64	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=55/65
RA	229	.	NC_000913	38163	0	G	A	consensus_score=398.0	frequency=1	major_base=A	major_cov=50/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/62
RA	230	.	NC_000913	42108	0	G	A	consensus_score=605.0	frequency=1	major_base=A	major_cov=85/85	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/85	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/85
RA	231	.	NC_000913	58065	0	C	A	bias_e_value=0.00527542	bias_p_value=1.13654e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.6	fisher_strand_p_value=4.58164e-11	frequency=3.588e-01	ks_quality_p_value=1	major_base=C	major_cov=37/47	major_frequency=6.412e-01	minor_base=A	minor_cov=46/1	new_cov=46/1	polymorphism_frequency=3.588e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=37/47	total_cov=83/49
RA	232	.	NC_000913	75070	0	C	T	consensus_score=396.2	frequency=1	major_base=T	major_cov=66/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/46
RA	233	.	NC_000913	81498	0	C	T	consensus_score=346.2	frequency=1	major_base=T	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	234	.	NC_000913	85651	0	G	T	bias_e_value=0.815758	bias_p_value=1.75747e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.8	fisher_strand_p_value=9.00071e-09	frequency=2.698e-01	ks_quality_p_value=1	major_base=G	major_cov=46/46	major_frequency=7.302e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.698e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=46/46	total_cov=46/80
RA	235	.	NC_000913	139208	0	G	T	bias_e_value=4.19931	bias_p_value=9.04701e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.1	fisher_strand_p_value=5.08414e-08	frequency=2.478e-01	ks_quality_p_value=1	major_base=G	major_cov=45/40	major_frequency=7.522e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.478e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=45/40	total_cov=45/68
RA	236	.	NC_000913	141849	0	C	A	bias_e_value=0.00026299	bias_p_value=5.66588e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=292.9	fisher_strand_p_value=2.02908e-12	frequency=2.642e-01	ks_quality_p_value=1	major_base=C	major_cov=52/65	major_frequency=7.358e-01	minor_base=A	minor_cov=42/0	new_cov=42/0	polymorphism_frequency=2.642e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=52/65	total_cov=94/65
RA	237	.	NC_000913	225579	0	C	A	bias_e_value=0.00789583	bias_p_value=1.70108e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.4	fisher_strand_p_value=6.97565e-11	frequency=2.879e-01	ks_quality_p_value=1	major_base=C	major_cov=42/52	major_frequency=7.121e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.879e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=42/52	total_cov=80/52
RA	238	.	NC_000913	226027	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=231.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/74	major_frequency=9.918e-01	minor_base=G	minor_cov=0/1	new_cov=47/74	polymorphism_frequency=9.918e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/75
RA	239	.	NC_000913	228689	0	T	.	bias_e_value=3716610	bias_p_value=0.800708	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.1	fisher_strand_p_value=0.439363	frequency=2.381e-01	ks_quality_p_value=1	major_base=T	major_cov=54/58	major_frequency=7.619e-01	minor_base=.	minor_cov=20/15	new_cov=20/15	polymorphism_frequency=2.381e-01	polymorphism_score=141.1	prediction=polymorphism	ref_cov=54/58	total_cov=74/73
RA	240	.	NC_000913	246747	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=467.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=62/68	major_frequency=9.924e-01	minor_base=G	minor_cov=0/1	new_cov=62/68	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=62/69
RA	241	.	NC_000913	260015	0	C	T	consensus_score=562.4	frequency=1	major_base=T	major_cov=88/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=88/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=88/68
RA	242	.	NC_000913	284535	0	T	G	consensus_score=145.4	frequency=1	major_base=G	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	243	.	NC_000913	299256	0	G	A	consensus_score=422.8	frequency=1	major_base=A	major_cov=57/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/62
RA	244	.	NC_000913	300585	0	G	A	consensus_score=288.0	frequency=1	major_base=A	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	245	.	NC_000913	300645	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=233.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/27	major_frequency=9.857e-01	minor_base=G	minor_cov=1/0	new_cov=42/27	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=43/27
RA	246	.	NC_000913	303911	0	C	T	consensus_score=416.3	frequency=1	major_base=T	major_cov=57/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/63
RA	247	.	NC_000913	305596	0	G	A	consensus_score=509.1	frequency=1	major_base=A	major_cov=86/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=86/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=86/65
RA	248	.	NC_000913	306474	0	C	T	consensus_score=326.8	frequency=1	major_base=T	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	249	.	NC_000913	313543	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=524.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=81/75	major_frequency=9.936e-01	minor_base=G	minor_cov=1/0	new_cov=81/75	polymorphism_frequency=9.936e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=82/75
RA	250	.	NC_000913	320845	0	C	A	bias_e_value=1161.88	bias_p_value=0.000250316	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.5	fisher_strand_p_value=2.12903e-05	frequency=3.441e-01	ks_quality_p_value=1	major_base=C	major_cov=39/22	major_frequency=6.559e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.441e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=39/22	total_cov=71/22
RA	251	.	NC_000913	331104	0	G	T	bias_e_value=10.4226	bias_p_value=2.24544e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.1	fisher_strand_p_value=1.33421e-07	frequency=2.340e-01	ks_quality_p_value=1	major_base=G	major_cov=43/29	major_frequency=7.660e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.340e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=43/29	total_cov=43/51
RA	252	.	NC_000913	332975	0	C	A	bias_e_value=0.0956176	bias_p_value=2.05999e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.2	fisher_strand_p_value=9.45864e-10	frequency=2.715e-01	ks_quality_p_value=1	major_base=C	major_cov=52/58	major_frequency=7.285e-01	minor_base=A	minor_cov=40/1	new_cov=40/1	polymorphism_frequency=2.715e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=52/58	total_cov=92/59
RA	253	.	NC_000913	337418	0	G	A	bias_e_value=3827880	bias_p_value=0.824681	consensus_score=226.9	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=0.998246	major_base=A	major_cov=31/36	major_frequency=9.853e-01	minor_base=G	minor_cov=1/0	new_cov=31/36	polymorphism_frequency=9.853e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=32/36
RA	254	.	NC_000913	342413	0	A	G	bias_e_value=3711760	bias_p_value=0.799664	consensus_score=393.2	fisher_strand_p_value=0.438095	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=59/45	major_frequency=9.905e-01	minor_base=T	minor_cov=0/1	new_cov=59/45	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/46
RA	255	.	NC_000913	363362	0	C	T	consensus_score=306.8	frequency=1	major_base=T	major_cov=32/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/58
RA	256	.	NC_000913	426428	0	C	T	consensus_score=389.0	frequency=1	major_base=T	major_cov=63/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/46
RA	257	.	NC_000913	429132	0	C	T	consensus_score=401.1	frequency=1	major_base=T	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	258	.	NC_000913	435272	0	C	T	bias_e_value=2325840	bias_p_value=0.50108	consensus_score=351.8	fisher_strand_p_value=0.187327	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/57	major_frequency=9.802e-01	minor_base=C	minor_cov=2/0	new_cov=42/57	polymorphism_frequency=9.802e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=44/57
RA	259	.	NC_000913	446642	0	C	T	consensus_score=409.5	frequency=1	major_base=T	major_cov=69/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/52
RA	260	.	NC_000913	456645	0	C	T	consensus_score=498.8	frequency=1	major_base=T	major_cov=67/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/76
RA	261	.	NC_000913	458220	0	C	T	consensus_score=415.5	frequency=1	major_base=T	major_cov=70/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/46
RA	262	.	NC_000913	460036	0	C	T	consensus_score=335.9	frequency=1	major_base=T	major_cov=53/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/42
RA	263	.	NC_000913	466776	0	C	T	consensus_score=297.6	frequency=1	major_base=T	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	264	.	NC_000913	472585	0	C	T	consensus_score=382.9	frequency=1	major_base=T	major_cov=62/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/46
RA	265	.	NC_000913	474379	0	C	T	bias_e_value=3966290	bias_p_value=0.854499	consensus_score=279.0	fisher_strand_p_value=0.511628	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/49	major_frequency=9.767e-01	minor_base=G	minor_cov=0/2	new_cov=35/49	polymorphism_frequency=9.767e-01	polymorphism_score=-7.1	prediction=consensus	ref_cov=0/0	total_cov=35/51
RA	266	.	NC_000913	480295	0	G	A	bias_e_value=3809350	bias_p_value=0.820688	consensus_score=547.5	fisher_strand_p_value=0.464516	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=71/83	major_frequency=9.935e-01	minor_base=G	minor_cov=1/0	new_cov=71/83	polymorphism_frequency=9.935e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=72/83
RA	267	.	NC_000913	480296	0	G	A	bias_e_value=3809350	bias_p_value=0.820688	consensus_score=556.0	fisher_strand_p_value=0.464516	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=71/83	major_frequency=9.935e-01	minor_base=G	minor_cov=1/0	new_cov=71/83	polymorphism_frequency=9.935e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=72/83
RA	268	.	NC_000913	480686	0	C	T	consensus_score=541.4	frequency=1	major_base=T	major_cov=79/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/74
RA	269	.	NC_000913	487802	0	C	T	consensus_score=347.3	frequency=1	major_base=T	major_cov=59/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/36
RA	270	.	NC_000913	492215	0	C	T	consensus_score=282.5	frequency=1	major_base=T	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	271	.	NC_000913	496241	0	C	T	consensus_score=363.0	frequency=1	major_base=T	major_cov=65/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/44
RA	272	.	NC_000913	500069	0	C	T	consensus_score=484.7	frequency=1	major_base=T	major_cov=73/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/68
RA	273	.	NC_000913	500641	0	C	T	consensus_score=366.4	frequency=1	major_base=T	major_cov=67/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/38
RA	274	.	NC_000913	501193	0	G	A	consensus_score=362.0	frequency=1	major_base=A	major_cov=54/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	275	.	NC_000913	508652	0	C	T	consensus_score=247.0	frequency=1	major_base=T	major_cov=27/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/51
RA	276	.	NC_000913	511602	0	G	A	bias_e_value=3747250	bias_p_value=0.807309	consensus_score=417.0	fisher_strand_p_value=0.448	frequency=1	ks_quality_p_value=0.998839	major_base=A	major_cov=55/69	major_frequency=9.920e-01	minor_base=G	minor_cov=1/0	new_cov=55/69	polymorphism_frequency=9.920e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=56/69
RA	277	.	NC_000913	512904	0	C	T	consensus_score=432.3	frequency=1	major_base=T	major_cov=65/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/56
RA	278	.	NC_000913	518704	0	C	T	consensus_score=297.9	frequency=1	major_base=T	major_cov=50/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/33
RA	279	.	NC_000913	518989	0	C	T	consensus_score=502.9	frequency=1	major_base=T	major_cov=86/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=86/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=86/57
RA	280	.	NC_000913	519280	0	C	T	consensus_score=412.9	frequency=1	major_base=T	major_cov=51/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/69
RA	281	.	NC_000913	566414	0	A	G	bias_e_value=795529	bias_p_value=0.171389	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.3	fisher_strand_p_value=0.0410291	frequency=2.721e-01	ks_quality_p_value=0.994927	major_base=A	major_cov=51/56	major_frequency=7.279e-01	minor_base=G	minor_cov=27/13	new_cov=27/13	polymorphism_frequency=2.721e-01	polymorphism_score=107.1	prediction=polymorphism	ref_cov=51/56	total_cov=78/69
RA	282	.	NC_000913	566435	0	G	A	bias_e_value=2193500	bias_p_value=0.472569	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.2	fisher_strand_p_value=0.171377	frequency=3.125e-01	ks_quality_p_value=0.99637	major_base=G	major_cov=54/56	major_frequency=6.875e-01	minor_base=A	minor_cov=31/19	new_cov=31/19	polymorphism_frequency=3.125e-01	polymorphism_score=134.8	prediction=polymorphism	ref_cov=54/56	total_cov=85/76
RA	283	.	NC_000913	566444	0	T	C	bias_e_value=1396900	bias_p_value=0.30095	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.3	fisher_strand_p_value=0.106226	frequency=3.256e-01	ks_quality_p_value=0.824831	major_base=T	major_cov=57/59	major_frequency=6.744e-01	minor_base=C	minor_cov=35/21	new_cov=35/21	polymorphism_frequency=3.256e-01	polymorphism_score=164.4	prediction=polymorphism	ref_cov=57/59	total_cov=92/80
RA	284	.	NC_000913	566451	0	T	C	bias_e_value=1002220	bias_p_value=0.215919	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.4	fisher_strand_p_value=0.0579527	frequency=3.466e-01	ks_quality_p_value=0.957367	major_base=T	major_cov=58/57	major_frequency=6.534e-01	minor_base=C	minor_cov=40/21	new_cov=40/21	polymorphism_frequency=3.466e-01	polymorphism_score=171.2	prediction=polymorphism	ref_cov=58/57	total_cov=98/79
RA	285	.	NC_000913	566463	0	T	C	bias_e_value=519242	bias_p_value=0.111866	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.1	fisher_strand_p_value=0.0819419	frequency=3.352e-01	ks_quality_p_value=0.287515	major_base=T	major_cov=62/59	major_frequency=6.648e-01	minor_base=C	minor_cov=40/21	new_cov=40/21	polymorphism_frequency=3.352e-01	polymorphism_score=183.2	prediction=polymorphism	ref_cov=62/59	total_cov=102/80
RA	286	.	NC_000913	566468	0	C	T	bias_e_value=1068590	bias_p_value=0.230217	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.5	fisher_strand_p_value=0.0608341	frequency=3.333e-01	ks_quality_p_value=0.99455	major_base=C	major_cov=62/60	major_frequency=6.667e-01	minor_base=T	minor_cov=40/21	new_cov=40/21	polymorphism_frequency=3.333e-01	polymorphism_score=172.4	prediction=polymorphism	ref_cov=62/60	total_cov=103/81
RA	287	.	NC_000913	566492	0	G	T	bias_e_value=1122940	bias_p_value=0.241926	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.4	fisher_strand_p_value=0.0655515	frequency=3.905e-01	ks_quality_p_value=0.987445	major_base=G	major_cov=66/62	major_frequency=6.095e-01	minor_base=T	minor_cov=53/29	new_cov=53/29	polymorphism_frequency=3.905e-01	polymorphism_score=232.7	prediction=polymorphism	ref_cov=66/62	total_cov=119/91
RA	288	.	NC_000913	566493	0	G	A	bias_e_value=969904	bias_p_value=0.208957	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.7	fisher_strand_p_value=0.0655515	frequency=3.905e-01	ks_quality_p_value=0.809932	major_base=G	major_cov=66/62	major_frequency=6.095e-01	minor_base=A	minor_cov=53/29	new_cov=53/29	polymorphism_frequency=3.905e-01	polymorphism_score=246.2	prediction=polymorphism	ref_cov=66/62	total_cov=119/91
RA	289	.	NC_000913	566498	0	C	T	bias_e_value=365919	bias_p_value=0.0788338	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.3	fisher_strand_p_value=0.0636059	frequency=3.905e-01	ks_quality_p_value=0.23897	major_base=C	major_cov=65/63	major_frequency=6.095e-01	minor_base=T	minor_cov=53/29	new_cov=53/29	polymorphism_frequency=3.905e-01	polymorphism_score=243.4	prediction=polymorphism	ref_cov=65/63	total_cov=119/92
RA	290	.	NC_000913	566510	0	G	C	bias_e_value=1137870	bias_p_value=0.245144	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.4	fisher_strand_p_value=0.0659097	frequency=3.868e-01	ks_quality_p_value=0.999968	major_base=G	major_cov=67/63	major_frequency=6.132e-01	minor_base=C	minor_cov=53/29	new_cov=53/29	polymorphism_frequency=3.868e-01	polymorphism_score=287.2	prediction=polymorphism	ref_cov=67/63	total_cov=121/92
RA	291	.	NC_000913	566513	0	C	T	bias_e_value=842786	bias_p_value=0.18157	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.6	fisher_strand_p_value=0.118837	frequency=3.897e-01	ks_quality_p_value=0.370614	major_base=C	major_cov=68/62	major_frequency=6.103e-01	minor_base=T	minor_cov=53/30	new_cov=53/30	polymorphism_frequency=3.897e-01	polymorphism_score=246.2	prediction=polymorphism	ref_cov=68/62	total_cov=121/92
RA	292	.	NC_000913	566519	0	T	C	bias_e_value=1105010	bias_p_value=0.238064	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.8	fisher_strand_p_value=0.0633808	frequency=3.961e-01	ks_quality_p_value=0.999095	major_base=T	major_cov=64/61	major_frequency=6.039e-01	minor_base=C	minor_cov=53/29	new_cov=53/29	polymorphism_frequency=3.961e-01	polymorphism_score=244.9	prediction=polymorphism	ref_cov=64/61	total_cov=117/91
RA	293	.	NC_000913	566522	0	C	A	bias_e_value=356569	bias_p_value=0.0768195	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.4	fisher_strand_p_value=0.0637965	frequency=3.952e-01	ks_quality_p_value=0.230743	major_base=C	major_cov=65/62	major_frequency=6.048e-01	minor_base=A	minor_cov=54/29	new_cov=54/29	polymorphism_frequency=3.952e-01	polymorphism_score=227.4	prediction=polymorphism	ref_cov=65/62	total_cov=119/91
RA	294	.	NC_000913	566528	0	A	G	bias_e_value=828292	bias_p_value=0.178448	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.0	fisher_strand_p_value=0.044674	frequency=3.913e-01	ks_quality_p_value=0.963567	major_base=A	major_cov=64/62	major_frequency=6.087e-01	minor_base=G	minor_cov=53/28	new_cov=53/28	polymorphism_frequency=3.913e-01	polymorphism_score=237.7	prediction=polymorphism	ref_cov=64/62	total_cov=117/90
RA	295	.	NC_000913	566530	1	.	T	bias_e_value=846041	bias_p_value=0.182272	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.0	fisher_strand_p_value=0.0443395	frequency=4.000e-01	ks_quality_p_value=0.998375	major_base=.	major_cov=61/62	major_frequency=6.000e-01	minor_base=T	minor_cov=53/29	new_cov=53/29	polymorphism_frequency=4.000e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=61/62	total_cov=114/91
RA	296	.	NC_000913	566532	0	A	T	bias_e_value=751184	bias_p_value=0.161835	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.5	fisher_strand_p_value=0.042661	frequency=3.941e-01	ks_quality_p_value=0.887654	major_base=A	major_cov=61/62	major_frequency=6.059e-01	minor_base=T	minor_cov=52/28	new_cov=52/28	polymorphism_frequency=3.941e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=61/62	total_cov=113/91
RA	297	.	NC_000913	566535	0	T	.	bias_e_value=1600550	bias_p_value=0.344824	consensus_reject=FREQUENCY_CUTOFF	consensus_score=423.6	fisher_strand_p_value=0.116089	frequency=3.857e-01	ks_quality_p_value=0.916653	major_base=T	major_cov=68/61	major_frequency=6.143e-01	minor_base=.	minor_cov=52/29	new_cov=52/29	polymorphism_frequency=3.857e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=68/61	total_cov=120/91
RA	298	.	NC_000913	566536	0	G	A	bias_e_value=900770	bias_p_value=0.194062	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.7	fisher_strand_p_value=0.0485644	frequency=3.733e-01	ks_quality_p_value=0.990467	major_base=G	major_cov=68/68	major_frequency=6.267e-01	minor_base=A	minor_cov=52/29	new_cov=52/29	polymorphism_frequency=3.733e-01	polymorphism_score=237.0	prediction=polymorphism	ref_cov=68/68	total_cov=121/97
RA	299	.	NC_000913	566543	0	A	T	bias_e_value=1312540	bias_p_value=0.282774	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.4	fisher_strand_p_value=0.0932694	frequency=3.727e-01	ks_quality_p_value=0.86077	major_base=A	major_cov=73/65	major_frequency=6.273e-01	minor_base=T	minor_cov=53/29	new_cov=53/29	polymorphism_frequency=3.727e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=73/65	total_cov=126/94
RA	300	.	NC_000913	566547	0	C	A	bias_e_value=1685120	bias_p_value=0.363043	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.5	fisher_strand_p_value=0.156017	frequency=3.779e-01	ks_quality_p_value=0.735083	major_base=C	major_cov=73/62	major_frequency=6.221e-01	minor_base=A	minor_cov=53/29	new_cov=53/29	polymorphism_frequency=3.779e-01	polymorphism_score=225.4	prediction=polymorphism	ref_cov=73/62	total_cov=126/91
RA	301	.	NC_000913	566565	0	A	G	bias_e_value=1202860	bias_p_value=0.259145	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.7	fisher_strand_p_value=0.124223	frequency=3.710e-01	ks_quality_p_value=0.5726	major_base=A	major_cov=75/64	major_frequency=6.290e-01	minor_base=G	minor_cov=53/29	new_cov=53/29	polymorphism_frequency=3.710e-01	polymorphism_score=245.6	prediction=polymorphism	ref_cov=75/64	total_cov=128/93
RA	302	.	NC_000913	566570	0	A	C	bias_e_value=1223690	bias_p_value=0.263633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.0	fisher_strand_p_value=0.124223	frequency=3.710e-01	ks_quality_p_value=0.586331	major_base=A	major_cov=75/64	major_frequency=6.290e-01	minor_base=C	minor_cov=53/29	new_cov=53/29	polymorphism_frequency=3.710e-01	polymorphism_score=264.3	prediction=polymorphism	ref_cov=75/64	total_cov=128/93
RA	303	.	NC_000913	566597	0	T	C	bias_e_value=1389910	bias_p_value=0.299442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.2	fisher_strand_p_value=0.0870005	frequency=3.886e-01	ks_quality_p_value=1	major_base=T	major_cov=67/62	major_frequency=6.114e-01	minor_base=C	minor_cov=53/29	new_cov=53/29	polymorphism_frequency=3.886e-01	polymorphism_score=239.0	prediction=polymorphism	ref_cov=67/62	total_cov=120/91
RA	304	.	NC_000913	566651	0	T	C	bias_e_value=1745290	bias_p_value=0.376006	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.3	fisher_strand_p_value=0.1412	frequency=3.850e-01	ks_quality_p_value=0.855128	major_base=T	major_cov=66/57	major_frequency=6.150e-01	minor_base=C	minor_cov=50/27	new_cov=50/27	polymorphism_frequency=3.850e-01	polymorphism_score=226.6	prediction=polymorphism	ref_cov=66/57	total_cov=116/84
RA	305	.	NC_000913	578331	0	G	T	bias_e_value=4608910	bias_p_value=0.992947	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.1	fisher_strand_p_value=0.883607	frequency=3.959e-01	ks_quality_p_value=1	major_base=G	major_cov=49/70	major_frequency=6.041e-01	minor_base=T	minor_cov=33/45	new_cov=33/45	polymorphism_frequency=3.959e-01	polymorphism_score=218.1	prediction=polymorphism	ref_cov=49/70	total_cov=82/116
RA	306	.	NC_000913	578427	0	G	C	bias_e_value=4447340	bias_p_value=0.958137	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.8	fisher_strand_p_value=0.777759	frequency=5.147e-01	ks_quality_p_value=0.932122	major_base=C	major_cov=46/59	major_frequency=5.147e-01	minor_base=G	minor_cov=41/58	new_cov=46/59	polymorphism_frequency=5.147e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=41/58	total_cov=87/118
RA	307	.	NC_000913	578571	0	C	T	bias_e_value=1641800	bias_p_value=0.353709	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.4	fisher_strand_p_value=0.110412	frequency=4.820e-01	ks_quality_p_value=1	major_base=C	major_cov=94/50	major_frequency=5.180e-01	minor_base=T	minor_cov=74/60	new_cov=74/60	polymorphism_frequency=4.820e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=94/50	total_cov=168/110
RA	308	.	NC_000913	578574	0	A	C	bias_e_value=1153620	bias_p_value=0.248536	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.0	fisher_strand_p_value=0.0671596	frequency=4.767e-01	ks_quality_p_value=1	major_base=A	major_cov=96/50	major_frequency=5.233e-01	minor_base=C	minor_cov=73/60	new_cov=73/60	polymorphism_frequency=4.767e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=96/50	total_cov=169/110
RA	309	.	NC_000913	578605	0	T	G	bias_e_value=514067	bias_p_value=0.110751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.7	fisher_strand_p_value=0.0241272	frequency=4.596e-01	ks_quality_p_value=0.964162	major_base=T	major_cov=101/46	major_frequency=5.404e-01	minor_base=G	minor_cov=69/56	new_cov=69/56	polymorphism_frequency=4.596e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=101/46	total_cov=170/102
RA	310	.	NC_000913	578729	0	A	G	bias_e_value=2280260	bias_p_value=0.49126	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.4	fisher_strand_p_value=0.187421	frequency=4.367e-01	ks_quality_p_value=0.968504	major_base=A	major_cov=112/57	major_frequency=5.633e-01	minor_base=G	minor_cov=77/54	new_cov=77/54	polymorphism_frequency=4.367e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=112/57	total_cov=189/113
RA	311	.	NC_000913	578809	0	T	C	bias_e_value=4523960	bias_p_value=0.974644	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.9	fisher_strand_p_value=1	frequency=4.147e-01	ks_quality_p_value=0.78343	major_base=T	major_cov=99/100	major_frequency=5.853e-01	minor_base=C	minor_cov=70/71	new_cov=70/71	polymorphism_frequency=4.147e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=99/100	total_cov=169/172
RA	312	.	NC_000913	578811	0	T	G	bias_e_value=4507150	bias_p_value=0.971022	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.2	fisher_strand_p_value=0.826323	frequency=4.130e-01	ks_quality_p_value=0.930783	major_base=T	major_cov=97/102	major_frequency=5.870e-01	minor_base=G	minor_cov=70/70	new_cov=70/70	polymorphism_frequency=4.130e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=97/102	total_cov=167/172
RA	313	.	NC_000913	578831	0	T	C	bias_e_value=2455320	bias_p_value=0.528974	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.4	fisher_strand_p_value=0.204434	frequency=4.278e-01	ks_quality_p_value=1	major_base=T	major_cov=103/107	major_frequency=5.722e-01	minor_base=C	minor_cov=66/91	new_cov=66/91	polymorphism_frequency=4.278e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=103/107	total_cov=170/198
RA	314	.	NC_000913	579004	0	C	T	bias_e_value=4620760	bias_p_value=0.995499	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.0	fisher_strand_p_value=0.906634	frequency=4.403e-01	ks_quality_p_value=1	major_base=C	major_cov=64/114	major_frequency=5.597e-01	minor_base=T	minor_cov=52/88	new_cov=52/88	polymorphism_frequency=4.403e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=64/114	total_cov=116/202
RA	315	.	NC_000913	579099	0	A	.	bias_e_value=4277410	bias_p_value=0.921527	consensus_reject=FREQUENCY_CUTOFF	consensus_score=473.8	fisher_strand_p_value=0.630965	frequency=4.910e-01	ks_quality_p_value=1	major_base=A	major_cov=63/78	major_frequency=5.090e-01	minor_base=.	minor_cov=65/71	new_cov=65/71	polymorphism_frequency=4.910e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=63/78	total_cov=128/150
RA	316	.	NC_000913	579127	0	T	C	bias_e_value=2408630	bias_p_value=0.518917	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.5	fisher_strand_p_value=0.211758	frequency=5.096e-01	ks_quality_p_value=0.935782	major_base=C	major_cov=83/50	major_frequency=5.096e-01	minor_base=T	minor_cov=70/58	new_cov=83/50	polymorphism_frequency=5.096e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=70/58	total_cov=153/109
RA	317	.	NC_000913	579134	0	T	C	bias_e_value=2553880	bias_p_value=0.55021	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.5	fisher_strand_p_value=0.256226	frequency=5.116e-01	ks_quality_p_value=0.851167	major_base=C	major_cov=82/50	major_frequency=5.116e-01	minor_base=T	minor_cov=69/57	new_cov=82/50	polymorphism_frequency=5.116e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=69/57	total_cov=151/107
RA	318	.	NC_000913	579146	0	A	G	bias_e_value=2902800	bias_p_value=0.62538	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.1	fisher_strand_p_value=0.273356	frequency=5.000e-01	ks_quality_p_value=0.992933	major_base=G	major_cov=90/51	major_frequency=5.000e-01	minor_base=A	minor_cov=80/61	new_cov=90/51	polymorphism_frequency=5.000e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=80/61	total_cov=170/112
RA	319	.	NC_000913	579271	0	G	A	bias_e_value=3716490	bias_p_value=0.800682	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.0	fisher_strand_p_value=0.439331	frequency=5.060e-01	ks_quality_p_value=1	major_base=A	major_cov=96/74	major_frequency=5.060e-01	minor_base=G	minor_cov=101/65	new_cov=96/74	polymorphism_frequency=5.060e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=101/65	total_cov=198/140
RA	320	.	NC_000913	579285	0	T	C	bias_e_value=4623130	bias_p_value=0.996011	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.1	fisher_strand_p_value=0.912015	frequency=4.882e-01	ks_quality_p_value=1	major_base=T	major_cov=106/68	major_frequency=5.118e-01	minor_base=C	minor_cov=100/66	new_cov=100/66	polymorphism_frequency=4.882e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=106/68	total_cov=206/134
RA	321	.	NC_000913	579385	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.2	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=1	major_base=G	major_cov=103/87	major_frequency=5.000e-01	minor_base=A	minor_cov=103/87	new_cov=103/87	polymorphism_frequency=5.000e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=103/87	total_cov=206/174
RA	322	.	NC_000913	579457	0	A	G	bias_e_value=4359970	bias_p_value=0.939313	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.0	fisher_strand_p_value=0.672492	frequency=5.042e-01	ks_quality_p_value=1	major_base=G	major_cov=93/87	major_frequency=5.042e-01	minor_base=A	minor_cov=87/90	new_cov=93/87	polymorphism_frequency=5.042e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=87/90	total_cov=180/177
RA	323	.	NC_000913	579502	0	A	G	bias_e_value=4485980	bias_p_value=0.966463	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.4	fisher_strand_p_value=0.75513	frequency=5.027e-01	ks_quality_p_value=0.996453	major_base=G	major_cov=96/90	major_frequency=5.027e-01	minor_base=A	minor_cov=91/93	new_cov=96/90	polymorphism_frequency=5.027e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=91/93	total_cov=188/183
RA	324	.	NC_000913	579540	0	T	C	bias_e_value=2384590	bias_p_value=0.513737	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.6	fisher_strand_p_value=0.203897	frequency=5.210e-01	ks_quality_p_value=0.956244	major_base=C	major_cov=98/88	major_frequency=5.210e-01	minor_base=T	minor_cov=78/93	new_cov=98/88	polymorphism_frequency=5.210e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=78/93	total_cov=176/181
RA	325	.	NC_000913	579651	0	C	T	bias_e_value=3987390	bias_p_value=0.859045	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.9	fisher_strand_p_value=0.529112	frequency=5.111e-01	ks_quality_p_value=0.979904	major_base=T	major_cov=94/90	major_frequency=5.111e-01	minor_base=C	minor_cov=84/92	new_cov=94/90	polymorphism_frequency=5.111e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=84/92	total_cov=178/182
RA	326	.	NC_000913	579671	0	T	C	bias_e_value=257276	bias_p_value=0.0554276	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.2	fisher_strand_p_value=0.913803	frequency=5.263e-01	ks_quality_p_value=0.0107952	major_base=C	major_cov=94/86	major_frequency=5.263e-01	minor_base=T	minor_cov=86/76	new_cov=94/86	polymorphism_frequency=5.263e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=86/76	total_cov=180/162
RA	327	.	NC_000913	579717	0	A	C	bias_e_value=964007	bias_p_value=0.207686	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.4	fisher_strand_p_value=0.916255	frequency=5.138e-01	ks_quality_p_value=0.0574733	major_base=C	major_cov=90/96	major_frequency=5.138e-01	minor_base=A	minor_cov=87/89	new_cov=90/96	polymorphism_frequency=5.138e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=87/89	total_cov=177/186
RA	328	.	NC_000913	579811	0	C	T	bias_e_value=3429730	bias_p_value=0.738903	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.9	fisher_strand_p_value=0.371037	frequency=4.906e-01	ks_quality_p_value=1	major_base=C	major_cov=86/77	major_frequency=5.094e-01	minor_base=T	minor_cov=74/83	new_cov=74/83	polymorphism_frequency=4.906e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=86/77	total_cov=160/161
RA	329	.	NC_000913	580020	0	G	A	bias_e_value=2015530	bias_p_value=0.434227	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.5	fisher_strand_p_value=0.552644	frequency=4.770e-01	ks_quality_p_value=0.271097	major_base=G	major_cov=77/71	major_frequency=5.230e-01	minor_base=A	minor_cov=65/70	new_cov=65/70	polymorphism_frequency=4.770e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=77/71	total_cov=142/141
RA	330	.	NC_000913	580115	0	C	T	bias_e_value=4516900	bias_p_value=0.973123	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.9	fisher_strand_p_value=1	frequency=4.903e-01	ks_quality_p_value=0.777295	major_base=C	major_cov=64/67	major_frequency=5.097e-01	minor_base=T	minor_cov=62/64	new_cov=62/64	polymorphism_frequency=4.903e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=64/67	total_cov=126/131
RA	331	.	NC_000913	580119	0	A	G	bias_e_value=4618070	bias_p_value=0.99492	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.3	fisher_strand_p_value=0.900915	frequency=4.825e-01	ks_quality_p_value=1	major_base=A	major_cov=65/68	major_frequency=5.175e-01	minor_base=G	minor_cov=62/62	new_cov=62/62	polymorphism_frequency=4.825e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=65/68	total_cov=127/130
RA	332	.	NC_000913	580120	0	C	T	bias_e_value=4036750	bias_p_value=0.869679	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.9	fisher_strand_p_value=1	frequency=4.733e-01	ks_quality_p_value=0.535068	major_base=C	major_cov=68/70	major_frequency=5.267e-01	minor_base=T	minor_cov=62/62	new_cov=62/62	polymorphism_frequency=4.733e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=68/70	total_cov=130/132
RA	333	.	NC_000913	580302	0	C	T	bias_e_value=1782300	bias_p_value=0.383981	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.3	fisher_strand_p_value=0.125215	frequency=4.878e-01	ks_quality_p_value=0.994639	major_base=C	major_cov=67/80	major_frequency=5.122e-01	minor_base=T	minor_cov=77/63	new_cov=77/63	polymorphism_frequency=4.878e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=67/80	total_cov=144/143
RA	334	.	NC_000913	580437	0	A	C	bias_e_value=4548000	bias_p_value=0.979824	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.5	fisher_strand_p_value=0.885908	frequency=3.619e-01	ks_quality_p_value=0.909765	major_base=A	major_cov=63/71	major_frequency=6.381e-01	minor_base=C	minor_cov=37/39	new_cov=37/39	polymorphism_frequency=3.619e-01	polymorphism_score=203.4	prediction=polymorphism	ref_cov=63/71	total_cov=100/111
RA	335	.	NC_000913	580830	0	T	A	bias_e_value=4308270	bias_p_value=0.928176	consensus_reject=FREQUENCY_CUTOFF	consensus_score=351.5	fisher_strand_p_value=0.701893	frequency=2.603e-01	ks_quality_p_value=0.920051	major_base=T	major_cov=43/65	major_frequency=7.397e-01	minor_base=A	minor_cov=17/21	new_cov=17/21	polymorphism_frequency=2.603e-01	polymorphism_score=141.9	prediction=polymorphism	ref_cov=43/65	total_cov=60/86
RA	336	.	NC_000913	580831	0	G	A	bias_e_value=4411170	bias_p_value=0.950345	consensus_reject=FREQUENCY_CUTOFF	consensus_score=296.4	fisher_strand_p_value=0.701893	frequency=2.603e-01	ks_quality_p_value=1	major_base=G	major_cov=43/65	major_frequency=7.397e-01	minor_base=A	minor_cov=17/21	new_cov=17/21	polymorphism_frequency=2.603e-01	polymorphism_score=98.2	prediction=polymorphism	ref_cov=43/65	total_cov=60/86
RA	337	.	NC_000913	581042	0	T	G	bias_e_value=4082140	bias_p_value=0.879459	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.1	fisher_strand_p_value=0.551087	frequency=4.916e-01	ks_quality_p_value=1	major_base=T	major_cov=43/48	major_frequency=5.084e-01	minor_base=G	minor_cov=46/42	new_cov=46/42	polymorphism_frequency=4.916e-01	polymorphism_score=279.6	prediction=polymorphism	ref_cov=43/48	total_cov=89/90
RA	338	.	NC_000913	581056	0	A	G	bias_e_value=2993380	bias_p_value=0.644895	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.0	fisher_strand_p_value=0.548637	frequency=4.831e-01	ks_quality_p_value=0.52259	major_base=A	major_cov=43/49	major_frequency=5.169e-01	minor_base=G	minor_cov=45/41	new_cov=45/41	polymorphism_frequency=4.831e-01	polymorphism_score=271.6	prediction=polymorphism	ref_cov=43/49	total_cov=88/90
RA	339	.	NC_000913	581073	0	G	A	bias_e_value=3961220	bias_p_value=0.853408	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.6	fisher_strand_p_value=0.531627	frequency=4.568e-01	ks_quality_p_value=0.959324	major_base=G	major_cov=43/45	major_frequency=5.432e-01	minor_base=A	minor_cov=40/34	new_cov=40/34	polymorphism_frequency=4.568e-01	polymorphism_score=226.4	prediction=polymorphism	ref_cov=43/45	total_cov=83/79
RA	340	.	NC_000913	581118	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.6	fisher_strand_p_value=1	frequency=4.302e-01	ks_quality_p_value=1	major_base=T	major_cov=57/41	major_frequency=5.698e-01	minor_base=C	minor_cov=43/31	new_cov=43/31	polymorphism_frequency=4.302e-01	polymorphism_score=204.3	prediction=polymorphism	ref_cov=57/41	total_cov=100/72
RA	341	.	NC_000913	581127	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.7	fisher_strand_p_value=1	frequency=4.386e-01	ks_quality_p_value=1	major_base=G	major_cov=57/39	major_frequency=5.614e-01	minor_base=A	minor_cov=44/31	new_cov=44/31	polymorphism_frequency=4.386e-01	polymorphism_score=224.2	prediction=polymorphism	ref_cov=57/39	total_cov=101/70
RA	342	.	NC_000913	581133	0	A	G	bias_e_value=4291190	bias_p_value=0.924496	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.1	fisher_strand_p_value=0.641414	frequency=4.360e-01	ks_quality_p_value=0.993875	major_base=A	major_cov=54/43	major_frequency=5.640e-01	minor_base=G	minor_cov=45/30	new_cov=45/30	polymorphism_frequency=4.360e-01	polymorphism_score=228.8	prediction=polymorphism	ref_cov=54/43	total_cov=99/73
RA	343	.	NC_000913	581185	0	C	T	bias_e_value=3604810	bias_p_value=0.776622	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.9	fisher_strand_p_value=0.874079	frequency=4.390e-01	ks_quality_p_value=0.470436	major_base=C	major_cov=53/39	major_frequency=5.610e-01	minor_base=T	minor_cov=40/32	new_cov=40/32	polymorphism_frequency=4.390e-01	polymorphism_score=216.9	prediction=polymorphism	ref_cov=53/39	total_cov=93/71
RA	344	.	NC_000913	581227	0	A	C	bias_e_value=4627910	bias_p_value=0.99704	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.5	fisher_strand_p_value=1	frequency=4.125e-01	ks_quality_p_value=0.92405	major_base=A	major_cov=51/43	major_frequency=5.875e-01	minor_base=C	minor_cov=36/30	new_cov=36/30	polymorphism_frequency=4.125e-01	polymorphism_score=212.6	prediction=polymorphism	ref_cov=51/43	total_cov=87/73
RA	345	.	NC_000913	606604	0	G	A	bias_e_value=3882580	bias_p_value=0.836465	consensus_score=361.6	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/50	major_frequency=9.905e-01	minor_base=G	minor_cov=0/1	new_cov=54/50	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/51
RA	346	.	NC_000913	690948	0	G	A	bias_e_value=1380030	bias_p_value=0.297314	consensus_score=425.0	fisher_strand_p_value=0.086131	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/67	major_frequency=9.752e-01	minor_base=C	minor_cov=3/0	new_cov=51/67	polymorphism_frequency=9.752e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=54/69
RA	347	.	NC_000913	700038	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=326.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/44	major_frequency=9.897e-01	minor_base=C	minor_cov=1/0	new_cov=52/44	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/44
RA	348	.	NC_000913	789597	0	C	T	bias_e_value=3347240	bias_p_value=0.721131	consensus_score=328.6	fisher_strand_p_value=0.353535	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/64	major_frequency=9.899e-01	minor_base=C	minor_cov=1/0	new_cov=34/64	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/64
RA	349	.	NC_000913	809217	0	C	A	bias_e_value=4641320	bias_p_value=0.999929	consensus_score=257.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988084	major_base=A	major_cov=43/34	major_frequency=9.872e-01	minor_base=.	minor_cov=1/0	new_cov=43/34	polymorphism_frequency=9.872e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=0/0	total_cov=44/34
RA	350	.	NC_000913	809218	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=286.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=43/34	major_frequency=9.872e-01	minor_base=A	minor_cov=1/0	new_cov=43/34	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=44/34
RA	351	.	NC_000913	834674	0	C	A	bias_e_value=0.00058416	bias_p_value=1.25852e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=242.1	fisher_strand_p_value=4.64478e-12	frequency=2.605e-01	ks_quality_p_value=1	major_base=C	major_cov=29/59	major_frequency=7.395e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.605e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=29/59	total_cov=60/59
RA	352	.	NC_000913	847955	0	G	A	bias_e_value=9.25616e-07	bias_p_value=1.99415e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.5	fisher_strand_p_value=5.90637e-15	frequency=3.265e-01	ks_quality_p_value=1	major_base=G	major_cov=60/39	major_frequency=6.735e-01	minor_base=A	minor_cov=0/48	new_cov=0/48	polymorphism_frequency=3.265e-01	polymorphism_score=55.1	prediction=polymorphism	ref_cov=60/39	total_cov=60/87
RA	353	.	NC_000913	891983	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=390.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=57/55	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=57/55	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/55
RA	354	.	NC_000913	908760	0	A	T	consensus_score=253.3	frequency=1	major_base=T	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	355	.	NC_000913	968837	0	G	A	consensus_score=239.5	frequency=1	major_base=A	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	356	.	NC_000913	1005503	0	A	G	consensus_score=442.9	frequency=1	major_base=G	major_cov=65/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/55
RA	357	.	NC_000913	1040126	0	G	T	bias_e_value=3867120	bias_p_value=0.833135	consensus_score=379.4	fisher_strand_p_value=0.481132	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=55/50	major_frequency=9.906e-01	minor_base=G	minor_cov=0/1	new_cov=55/50	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=55/51
RA	358	.	NC_000913	1061935	0	G	A	consensus_score=249.7	frequency=1	major_base=A	major_cov=42/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/33
RA	359	.	NC_000913	1097118	0	C	A	bias_e_value=2577160	bias_p_value=0.555225	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.1	fisher_strand_p_value=0.221401	frequency=3.778e-01	ks_quality_p_value=1	major_base=C	major_cov=12/16	major_frequency=6.222e-01	minor_base=A	minor_cov=11/6	new_cov=11/6	polymorphism_frequency=3.778e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=12/16	total_cov=23/22
RA	360	.	NC_000913	1097158	0	C	T	bias_e_value=2420060	bias_p_value=0.52138	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.7	fisher_strand_p_value=0.428995	frequency=2.353e-01	ks_quality_p_value=0.465471	major_base=C	major_cov=11/15	major_frequency=7.647e-01	minor_base=T	minor_cov=5/3	new_cov=5/3	polymorphism_frequency=2.353e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=11/15	total_cov=16/18
RA	361	.	NC_000913	1111727	0	C	T	consensus_score=359.5	frequency=1	major_base=T	major_cov=51/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/49
RA	362	.	NC_000913	1111728	0	C	T	consensus_score=359.5	frequency=1	major_base=T	major_cov=51/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/49
RA	363	.	NC_000913	1115233	0	C	T	consensus_score=275.0	frequency=1	major_base=T	major_cov=47/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/34
RA	364	.	NC_000913	1129324	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=238.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/31	major_frequency=9.855e-01	minor_base=C	minor_cov=1/0	new_cov=37/31	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/31
RA	365	.	NC_000913	1133668	0	C	T	consensus_score=352.1	frequency=1	major_base=T	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	366	.	NC_000913	1155389	0	C	T	consensus_score=375.4	frequency=1	major_base=T	major_cov=52/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/54
RA	367	.	NC_000913	1169836	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=313.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/48	major_frequency=9.885e-01	minor_base=A	minor_cov=0/1	new_cov=38/48	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=38/50
RA	368	.	NC_000913	1180426	0	T	A	consensus_score=257.8	frequency=1	major_base=A	major_cov=47/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/30
RA	369	.	NC_000913	1181285	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=434.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=73/45	major_frequency=9.916e-01	minor_base=C	minor_cov=1/0	new_cov=73/45	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=74/45
RA	370	.	NC_000913	1186294	0	G	A	consensus_score=308.8	frequency=1	major_base=A	major_cov=38/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/53
RA	371	.	NC_000913	1189296	0	C	T	bias_e_value=3898130	bias_p_value=0.839816	consensus_score=350.3	fisher_strand_p_value=0.490385	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=53/50	major_frequency=9.904e-01	minor_base=G	minor_cov=0/1	new_cov=53/50	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	372	.	NC_000913	1189980	0	A	G	bias_e_value=3792340	bias_p_value=0.817025	consensus_score=320.5	fisher_strand_p_value=0.45977	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/39	major_frequency=9.885e-01	minor_base=A	minor_cov=0/1	new_cov=47/39	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/40
RA	373	.	NC_000913	1196220	0	C	T	consensus_score=145.3	frequency=1	major_base=T	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	374	.	NC_000913	1196232	0	C	T	consensus_score=132.6	frequency=1	major_base=T	major_cov=26/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/19
RA	375	.	NC_000913	1196245	0	T	C	consensus_score=126.4	frequency=1	major_base=C	major_cov=23/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/19
RA	376	.	NC_000913	1196247	0	A	G	consensus_score=129.3	frequency=1	major_base=G	major_cov=23/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/19
RA	377	.	NC_000913	1196277	0	C	T	consensus_score=81.8	deleted=1	frequency=1	major_base=T	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	378	.	NC_000913	1196280	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=76.3	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=17/14	major_frequency=9.688e-01	minor_base=A	minor_cov=1/0	new_cov=17/14	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	379	.	NC_000913	1196283	0	A	G	consensus_score=90.3	deleted=1	frequency=1	major_base=G	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	380	.	NC_000913	1196292	0	C	T	consensus_score=81.6	deleted=1	frequency=1	major_base=T	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	381	.	NC_000913	1196304	0	G	A	consensus_score=65.2	deleted=1	frequency=1	major_base=A	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	382	.	NC_000913	1196316	0	T	A	consensus_score=49.0	deleted=1	frequency=1	major_base=A	major_cov=13/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	383	.	NC_000913	1196325	0	A	G	consensus_score=32.4	deleted=1	frequency=1	major_base=G	major_cov=10/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/6
RA	384	.	NC_000913	1196352	0	C	A	consensus_score=19.7	deleted=1	frequency=1	major_base=A	major_cov=8/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/4
RA	385	.	NC_000913	1272420	0	C	A	bias_e_value=0.0242681	bias_p_value=5.22833e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.3	fisher_strand_p_value=2.25224e-10	frequency=3.163e-01	ks_quality_p_value=1	major_base=C	major_cov=25/42	major_frequency=6.837e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.163e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=25/42	total_cov=57/42
RA	386	.	NC_000913	1278991	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=369.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/38	major_frequency=9.902e-01	minor_base=C	minor_cov=1/0	new_cov=63/38	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=64/38
RA	387	.	NC_000913	1293285	0	C	A	bias_e_value=703.735	bias_p_value=0.000151613	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.4	fisher_strand_p_value=1.23221e-05	frequency=2.111e-01	ks_quality_p_value=1	major_base=C	major_cov=43/28	major_frequency=7.889e-01	minor_base=A	minor_cov=1/18	new_cov=1/18	polymorphism_frequency=2.111e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=43/28	total_cov=44/46
RA	388	.	NC_000913	1301998	0	A	G	consensus_score=472.2	frequency=1	major_base=G	major_cov=60/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/69
RA	389	.	NC_000913	1302268	0	C	T	bias_e_value=3888140	bias_p_value=0.837662	consensus_score=481.5	fisher_strand_p_value=0.489209	frequency=1	ks_quality_p_value=0.996254	major_base=T	major_cov=71/67	major_frequency=9.928e-01	minor_base=C	minor_cov=0/1	new_cov=71/67	polymorphism_frequency=9.928e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/1	total_cov=71/69
RA	390	.	NC_000913	1334966	0	A	C	bias_e_value=0.00217171	bias_p_value=4.67874e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=334.1	fisher_strand_p_value=1.81836e-11	frequency=2.254e-01	ks_quality_p_value=1	major_base=A	major_cov=62/72	major_frequency=7.746e-01	minor_base=C	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.254e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=62/72	total_cov=101/72
RA	391	.	NC_000913	1337394	0	A	G	bias_e_value=3703310	bias_p_value=0.797844	consensus_score=262.2	fisher_strand_p_value=0.435897	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/33	major_frequency=9.872e-01	minor_base=T	minor_cov=0/1	new_cov=44/33	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/34
RA	392	.	NC_000913	1357202	0	C	T	consensus_score=332.8	frequency=1	major_base=T	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	393	.	NC_000913	1358859	0	T	C	consensus_score=330.2	frequency=1	major_base=C	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	394	.	NC_000913	1397802	0	G	A	bias_e_value=3704370	bias_p_value=0.798071	consensus_score=324.2	fisher_strand_p_value=0.43617	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/53	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=40/53	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/53
RA	395	.	NC_000913	1423272	0	C	T	bias_e_value=4072650	bias_p_value=0.877415	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.7	fisher_strand_p_value=0.547674	frequency=2.463e-01	ks_quality_p_value=1	major_base=C	major_cov=47/54	major_frequency=7.537e-01	minor_base=T	minor_cov=13/20	new_cov=13/20	polymorphism_frequency=2.463e-01	polymorphism_score=82.7	prediction=polymorphism	ref_cov=47/54	total_cov=60/74
RA	396	.	NC_000913	1423273	0	G	A	bias_e_value=4042610	bias_p_value=0.870942	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.8	fisher_strand_p_value=0.547674	frequency=2.463e-01	ks_quality_p_value=0.980683	major_base=G	major_cov=47/54	major_frequency=7.537e-01	minor_base=A	minor_cov=13/20	new_cov=13/20	polymorphism_frequency=2.463e-01	polymorphism_score=86.3	prediction=polymorphism	ref_cov=47/54	total_cov=60/74
RA	397	.	NC_000913	1423283	0	A	C	bias_e_value=4052410	bias_p_value=0.873053	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.6	fisher_strand_p_value=0.547766	frequency=2.409e-01	ks_quality_p_value=0.986749	major_base=A	major_cov=49/55	major_frequency=7.591e-01	minor_base=C	minor_cov=13/20	new_cov=13/20	polymorphism_frequency=2.409e-01	polymorphism_score=96.3	prediction=polymorphism	ref_cov=49/55	total_cov=62/75
RA	398	.	NC_000913	1423284	0	A	C	bias_e_value=4072910	bias_p_value=0.87747	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.7	fisher_strand_p_value=0.547766	frequency=2.409e-01	ks_quality_p_value=1	major_base=A	major_cov=49/55	major_frequency=7.591e-01	minor_base=C	minor_cov=13/20	new_cov=13/20	polymorphism_frequency=2.409e-01	polymorphism_score=93.2	prediction=polymorphism	ref_cov=49/55	total_cov=62/75
RA	399	.	NC_000913	1423338	0	G	C	bias_e_value=4627290	bias_p_value=0.996906	consensus_reject=FREQUENCY_CUTOFF	consensus_score=333.7	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=0.922371	major_base=G	major_cov=38/61	major_frequency=7.500e-01	minor_base=C	minor_cov=13/20	new_cov=13/20	polymorphism_frequency=2.500e-01	polymorphism_score=103.9	prediction=polymorphism	ref_cov=38/61	total_cov=51/82
RA	400	.	NC_000913	1423404	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.6	fisher_strand_p_value=1	frequency=2.578e-01	ks_quality_p_value=1	major_base=G	major_cov=39/56	major_frequency=7.422e-01	minor_base=T	minor_cov=13/20	new_cov=13/20	polymorphism_frequency=2.578e-01	polymorphism_score=78.0	prediction=polymorphism	ref_cov=39/56	total_cov=52/76
RA	401	.	NC_000913	1428966	0	T	G	bias_e_value=731759	bias_p_value=0.157651	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.0	fisher_strand_p_value=0.0373941	frequency=2.021e-01	ks_quality_p_value=0.97867	major_base=T	major_cov=37/38	major_frequency=7.979e-01	minor_base=G	minor_cov=4/15	new_cov=4/15	polymorphism_frequency=2.021e-01	polymorphism_score=44.1	prediction=polymorphism	ref_cov=37/38	total_cov=41/53
RA	402	.	NC_000913	1428978	0	G	A	bias_e_value=615237	bias_p_value=0.132547	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.8	fisher_strand_p_value=0.0383341	frequency=2.043e-01	ks_quality_p_value=0.762951	major_base=G	major_cov=36/38	major_frequency=7.957e-01	minor_base=A	minor_cov=4/15	new_cov=4/15	polymorphism_frequency=2.043e-01	polymorphism_score=46.8	prediction=polymorphism	ref_cov=36/38	total_cov=40/53
RA	403	.	NC_000913	1429021	0	T	A	bias_e_value=1598830	bias_p_value=0.344452	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.4	fisher_strand_p_value=0.163301	frequency=3.333e-01	ks_quality_p_value=0.650623	major_base=T	major_cov=40/36	major_frequency=6.667e-01	minor_base=A	minor_cov=14/24	new_cov=14/24	polymorphism_frequency=3.333e-01	polymorphism_score=144.5	prediction=polymorphism	ref_cov=40/36	total_cov=54/60
RA	404	.	NC_000913	1429022	0	T	A	bias_e_value=1728920	bias_p_value=0.372479	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.4	fisher_strand_p_value=0.163301	frequency=3.333e-01	ks_quality_p_value=0.729213	major_base=T	major_cov=40/36	major_frequency=6.667e-01	minor_base=A	minor_cov=14/24	new_cov=14/24	polymorphism_frequency=3.333e-01	polymorphism_score=146.9	prediction=polymorphism	ref_cov=40/36	total_cov=54/60
RA	405	.	NC_000913	1429024	0	A	C	bias_e_value=2525050	bias_p_value=0.543999	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.6	fisher_strand_p_value=0.235421	frequency=3.421e-01	ks_quality_p_value=0.90917	major_base=A	major_cov=39/36	major_frequency=6.579e-01	minor_base=C	minor_cov=15/24	new_cov=15/24	polymorphism_frequency=3.421e-01	polymorphism_score=118.5	prediction=polymorphism	ref_cov=39/36	total_cov=54/60
RA	406	.	NC_000913	1429027	0	C	T	bias_e_value=1108200	bias_p_value=0.238752	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.7	fisher_strand_p_value=0.237573	frequency=3.391e-01	ks_quality_p_value=0.267593	major_base=C	major_cov=39/37	major_frequency=6.609e-01	minor_base=T	minor_cov=15/24	new_cov=15/24	polymorphism_frequency=3.391e-01	polymorphism_score=108.4	prediction=polymorphism	ref_cov=39/37	total_cov=54/61
RA	407	.	NC_000913	1429069	0	T	A	bias_e_value=3000430	bias_p_value=0.646413	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.3	fisher_strand_p_value=0.721928	frequency=4.015e-01	ks_quality_p_value=0.398834	major_base=T	major_cov=38/41	major_frequency=5.985e-01	minor_base=A	minor_cov=23/30	new_cov=23/30	polymorphism_frequency=4.015e-01	polymorphism_score=213.5	prediction=polymorphism	ref_cov=38/41	total_cov=61/72
RA	408	.	NC_000913	1429072	0	A	C	bias_e_value=4079520	bias_p_value=0.878893	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.7	fisher_strand_p_value=0.724234	frequency=3.926e-01	ks_quality_p_value=0.759615	major_base=A	major_cov=39/43	major_frequency=6.074e-01	minor_base=C	minor_cov=23/30	new_cov=23/30	polymorphism_frequency=3.926e-01	polymorphism_score=169.6	prediction=polymorphism	ref_cov=39/43	total_cov=62/74
RA	409	.	NC_000913	1429111	0	A	C	bias_e_value=4149590	bias_p_value=0.893989	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.9	fisher_strand_p_value=1	frequency=4.097e-01	ks_quality_p_value=0.576436	major_base=A	major_cov=41/44	major_frequency=5.903e-01	minor_base=C	minor_cov=28/31	new_cov=28/31	polymorphism_frequency=4.097e-01	polymorphism_score=192.0	prediction=polymorphism	ref_cov=41/44	total_cov=69/75
RA	410	.	NC_000913	1429114	0	C	T	bias_e_value=4327960	bias_p_value=0.932419	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.1	fisher_strand_p_value=1	frequency=4.207e-01	ks_quality_p_value=0.655651	major_base=C	major_cov=39/45	major_frequency=5.793e-01	minor_base=T	minor_cov=29/32	new_cov=29/32	polymorphism_frequency=4.207e-01	polymorphism_score=179.8	prediction=polymorphism	ref_cov=39/45	total_cov=68/77
RA	411	.	NC_000913	1429126	0	A	C	bias_e_value=4605190	bias_p_value=0.992145	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.5	fisher_strand_p_value=1	frequency=4.138e-01	ks_quality_p_value=0.877306	major_base=A	major_cov=40/45	major_frequency=5.862e-01	minor_base=C	minor_cov=28/32	new_cov=28/32	polymorphism_frequency=4.138e-01	polymorphism_score=183.9	prediction=polymorphism	ref_cov=40/45	total_cov=68/77
RA	412	.	NC_000913	1429128	0	A	G	bias_e_value=2681390	bias_p_value=0.577679	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.8	fisher_strand_p_value=1	frequency=4.138e-01	ks_quality_p_value=0.236633	major_base=A	major_cov=40/45	major_frequency=5.862e-01	minor_base=G	minor_cov=28/32	new_cov=28/32	polymorphism_frequency=4.138e-01	polymorphism_score=182.1	prediction=polymorphism	ref_cov=40/45	total_cov=68/77
RA	413	.	NC_000913	1429160	0	C	G	bias_e_value=4448530	bias_p_value=0.958395	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.6	fisher_strand_p_value=0.868289	frequency=4.863e-01	ks_quality_p_value=0.83586	major_base=C	major_cov=34/41	major_frequency=5.137e-01	minor_base=G	minor_cov=34/37	new_cov=34/37	polymorphism_frequency=4.863e-01	polymorphism_score=250.3	prediction=polymorphism	ref_cov=34/41	total_cov=68/78
RA	414	.	NC_000913	1429164	0	C	G	bias_e_value=2914010	bias_p_value=0.627796	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.6	fisher_strand_p_value=0.506755	frequency=4.897e-01	ks_quality_p_value=0.539277	major_base=C	major_cov=31/43	major_frequency=5.103e-01	minor_base=G	minor_cov=34/37	new_cov=34/37	polymorphism_frequency=4.897e-01	polymorphism_score=250.4	prediction=polymorphism	ref_cov=31/43	total_cov=67/80
RA	415	.	NC_000913	1429171	0	A	G	bias_e_value=1161870	bias_p_value=0.250314	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.0	fisher_strand_p_value=0.515977	frequency=4.834e-01	ks_quality_p_value=0.131438	major_base=A	major_cov=33/45	major_frequency=5.166e-01	minor_base=G	minor_cov=35/38	new_cov=35/38	polymorphism_frequency=4.834e-01	polymorphism_score=228.8	prediction=polymorphism	ref_cov=33/45	total_cov=68/83
RA	416	.	NC_000913	1429204	0	C	T	bias_e_value=1853880	bias_p_value=0.399401	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.8	fisher_strand_p_value=0.249894	frequency=4.702e-01	ks_quality_p_value=0.528435	major_base=C	major_cov=31/49	major_frequency=5.298e-01	minor_base=T	minor_cov=35/36	new_cov=35/36	polymorphism_frequency=4.702e-01	polymorphism_score=214.5	prediction=polymorphism	ref_cov=31/49	total_cov=66/85
RA	417	.	NC_000913	1429207	0	T	G	bias_e_value=1632120	bias_p_value=0.351625	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.9	fisher_strand_p_value=0.32487	frequency=4.702e-01	ks_quality_p_value=0.336959	major_base=T	major_cov=32/48	major_frequency=5.298e-01	minor_base=G	minor_cov=35/36	new_cov=35/36	polymorphism_frequency=4.702e-01	polymorphism_score=238.3	prediction=polymorphism	ref_cov=32/48	total_cov=67/84
RA	418	.	NC_000913	1429225	0	C	T	bias_e_value=1970560	bias_p_value=0.424539	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.7	fisher_strand_p_value=0.146183	frequency=4.080e-01	ks_quality_p_value=0.99028	major_base=C	major_cov=33/41	major_frequency=5.920e-01	minor_base=T	minor_cov=30/21	new_cov=30/21	polymorphism_frequency=4.080e-01	polymorphism_score=141.4	prediction=polymorphism	ref_cov=33/41	total_cov=63/62
RA	419	.	NC_000913	1429228	0	T	C	bias_e_value=1547220	bias_p_value=0.333334	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.6	fisher_strand_p_value=0.139327	frequency=4.153e-01	ks_quality_p_value=0.727349	major_base=T	major_cov=31/38	major_frequency=5.847e-01	minor_base=C	minor_cov=29/20	new_cov=29/20	polymorphism_frequency=4.153e-01	polymorphism_score=139.0	prediction=polymorphism	ref_cov=31/38	total_cov=60/58
RA	420	.	NC_000913	1429231	0	T	C	bias_e_value=1173720	bias_p_value=0.252868	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.6	fisher_strand_p_value=0.197474	frequency=4.237e-01	ks_quality_p_value=0.34825	major_base=T	major_cov=31/37	major_frequency=5.763e-01	minor_base=C	minor_cov=29/21	new_cov=29/21	polymorphism_frequency=4.237e-01	polymorphism_score=147.4	prediction=polymorphism	ref_cov=31/37	total_cov=60/58
RA	421	.	NC_000913	1429235	0	T	C	bias_e_value=2822910	bias_p_value=0.608169	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.3	fisher_strand_p_value=0.258466	frequency=4.298e-01	ks_quality_p_value=1	major_base=T	major_cov=31/34	major_frequency=5.702e-01	minor_base=C	minor_cov=29/20	new_cov=29/20	polymorphism_frequency=4.298e-01	polymorphism_score=140.3	prediction=polymorphism	ref_cov=31/34	total_cov=60/55
RA	422	.	NC_000913	1429236	0	T	A	bias_e_value=4046630	bias_p_value=0.871809	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.5	fisher_strand_p_value=0.561204	frequency=4.312e-01	ks_quality_p_value=0.959529	major_base=T	major_cov=31/31	major_frequency=5.688e-01	minor_base=A	minor_cov=27/20	new_cov=27/20	polymorphism_frequency=4.312e-01	polymorphism_score=188.8	prediction=polymorphism	ref_cov=31/31	total_cov=58/54
RA	423	.	NC_000913	1429240	0	G	T	bias_e_value=3269880	bias_p_value=0.704464	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.6	fisher_strand_p_value=0.346821	frequency=4.348e-01	ks_quality_p_value=0.97412	major_base=G	major_cov=31/34	major_frequency=5.652e-01	minor_base=T	minor_cov=29/21	new_cov=29/21	polymorphism_frequency=4.348e-01	polymorphism_score=141.0	prediction=polymorphism	ref_cov=31/34	total_cov=60/55
RA	424	.	NC_000913	1429243	0	A	C	bias_e_value=778412	bias_p_value=0.167701	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.3	fisher_strand_p_value=0.187058	frequency=4.261e-01	ks_quality_p_value=0.21209	major_base=A	major_cov=30/36	major_frequency=5.739e-01	minor_base=C	minor_cov=29/20	new_cov=29/20	polymorphism_frequency=4.261e-01	polymorphism_score=153.7	prediction=polymorphism	ref_cov=30/36	total_cov=59/56
RA	425	.	NC_000913	1429246	0	A	T	bias_e_value=1720810	bias_p_value=0.370733	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.3	fisher_strand_p_value=0.187058	frequency=4.261e-01	ks_quality_p_value=0.632219	major_base=A	major_cov=30/36	major_frequency=5.739e-01	minor_base=T	minor_cov=29/20	new_cov=29/20	polymorphism_frequency=4.261e-01	polymorphism_score=199.1	prediction=polymorphism	ref_cov=30/36	total_cov=59/56
RA	426	.	NC_000913	1429249	0	C	T	bias_e_value=2255260	bias_p_value=0.485874	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.5	fisher_strand_p_value=0.187058	frequency=4.261e-01	ks_quality_p_value=0.953594	major_base=C	major_cov=30/36	major_frequency=5.739e-01	minor_base=T	minor_cov=29/20	new_cov=29/20	polymorphism_frequency=4.261e-01	polymorphism_score=141.5	prediction=polymorphism	ref_cov=30/36	total_cov=59/56
RA	427	.	NC_000913	1429252	0	G	A	bias_e_value=2805640	bias_p_value=0.604448	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.9	fisher_strand_p_value=0.255727	frequency=4.375e-01	ks_quality_p_value=1	major_base=G	major_cov=30/33	major_frequency=5.625e-01	minor_base=A	minor_cov=29/20	new_cov=29/20	polymorphism_frequency=4.375e-01	polymorphism_score=137.8	prediction=polymorphism	ref_cov=30/33	total_cov=59/55
RA	428	.	NC_000913	1429255	0	G	A	bias_e_value=2566220	bias_p_value=0.552868	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.4	fisher_strand_p_value=0.339468	frequency=4.273e-01	ks_quality_p_value=0.647606	major_base=G	major_cov=30/33	major_frequency=5.727e-01	minor_base=A	minor_cov=27/20	new_cov=27/20	polymorphism_frequency=4.273e-01	polymorphism_score=138.2	prediction=polymorphism	ref_cov=30/33	total_cov=59/55
RA	429	.	NC_000913	1429258	0	A	G	bias_e_value=1262310	bias_p_value=0.271952	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.5	fisher_strand_p_value=0.184248	frequency=4.336e-01	ks_quality_p_value=0.412695	major_base=A	major_cov=29/35	major_frequency=5.664e-01	minor_base=G	minor_cov=29/20	new_cov=29/20	polymorphism_frequency=4.336e-01	polymorphism_score=148.2	prediction=polymorphism	ref_cov=29/35	total_cov=59/55
RA	430	.	NC_000913	1429261	0	T	C	bias_e_value=2087340	bias_p_value=0.449698	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.5	fisher_strand_p_value=0.188976	frequency=4.298e-01	ks_quality_p_value=0.836551	major_base=T	major_cov=30/35	major_frequency=5.702e-01	minor_base=C	minor_cov=29/20	new_cov=29/20	polymorphism_frequency=4.298e-01	polymorphism_score=143.9	prediction=polymorphism	ref_cov=30/35	total_cov=59/55
RA	431	.	NC_000913	1429273	0	T	C	bias_e_value=3138440	bias_p_value=0.676148	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.3	fisher_strand_p_value=0.355392	frequency=4.370e-01	ks_quality_p_value=0.879705	major_base=T	major_cov=32/35	major_frequency=5.630e-01	minor_base=C	minor_cov=30/22	new_cov=30/22	polymorphism_frequency=4.370e-01	polymorphism_score=160.1	prediction=polymorphism	ref_cov=32/35	total_cov=62/57
RA	432	.	NC_000913	1429291	0	T	A	bias_e_value=2134380	bias_p_value=0.459833	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.9	fisher_strand_p_value=0.191502	frequency=4.561e-01	ks_quality_p_value=0.854479	major_base=T	major_cov=29/33	major_frequency=5.439e-01	minor_base=A	minor_cov=31/21	new_cov=31/21	polymorphism_frequency=4.561e-01	polymorphism_score=205.9	prediction=polymorphism	ref_cov=29/33	total_cov=60/55
RA	433	.	NC_000913	1429297	0	C	G	bias_e_value=2668360	bias_p_value=0.574873	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.2	fisher_strand_p_value=0.238089	frequency=4.019e-01	ks_quality_p_value=0.985731	major_base=C	major_cov=29/35	major_frequency=5.981e-01	minor_base=G	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.019e-01	polymorphism_score=143.4	prediction=polymorphism	ref_cov=29/35	total_cov=55/53
RA	434	.	NC_000913	1429300	0	T	G	bias_e_value=1641610	bias_p_value=0.353668	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.6	fisher_strand_p_value=0.111961	frequency=4.231e-01	ks_quality_p_value=0.985996	major_base=T	major_cov=25/35	major_frequency=5.769e-01	minor_base=G	minor_cov=26/18	new_cov=26/18	polymorphism_frequency=4.231e-01	polymorphism_score=139.0	prediction=polymorphism	ref_cov=25/35	total_cov=51/53
RA	435	.	NC_000913	1429319	0	G	T	bias_e_value=555261	bias_p_value=0.119626	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.1	fisher_strand_p_value=0.0296006	frequency=4.190e-01	ks_quality_p_value=0.866669	major_base=G	major_cov=25/36	major_frequency=5.810e-01	minor_base=T	minor_cov=28/16	new_cov=28/16	polymorphism_frequency=4.190e-01	polymorphism_score=131.6	prediction=polymorphism	ref_cov=25/36	total_cov=53/52
RA	436	.	NC_000913	1429345	0	T	G	bias_e_value=2167970	bias_p_value=0.46707	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.2	fisher_strand_p_value=0.167957	frequency=4.151e-01	ks_quality_p_value=0.998231	major_base=T	major_cov=26/36	major_frequency=5.849e-01	minor_base=G	minor_cov=25/19	new_cov=25/19	polymorphism_frequency=4.151e-01	polymorphism_score=138.6	prediction=polymorphism	ref_cov=26/36	total_cov=51/55
RA	437	.	NC_000913	1429353	0	C	T	bias_e_value=3618970	bias_p_value=0.779674	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.0	fisher_strand_p_value=0.414648	frequency=4.184e-01	ks_quality_p_value=1	major_base=C	major_cov=28/29	major_frequency=5.816e-01	minor_base=T	minor_cov=24/17	new_cov=24/17	polymorphism_frequency=4.184e-01	polymorphism_score=115.0	prediction=polymorphism	ref_cov=28/29	total_cov=52/47
RA	438	.	NC_000913	1429354	0	A	G	bias_e_value=3098690	bias_p_value=0.667583	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.9	fisher_strand_p_value=0.305348	frequency=4.082e-01	ks_quality_p_value=1	major_base=A	major_cov=28/30	major_frequency=5.918e-01	minor_base=G	minor_cov=24/16	new_cov=24/16	polymorphism_frequency=4.082e-01	polymorphism_score=111.1	prediction=polymorphism	ref_cov=28/30	total_cov=52/46
RA	439	.	NC_000913	1429360	0	C	T	bias_e_value=3605480	bias_p_value=0.776766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.3	fisher_strand_p_value=0.416674	frequency=4.242e-01	ks_quality_p_value=0.987247	major_base=C	major_cov=27/30	major_frequency=5.758e-01	minor_base=T	minor_cov=24/18	new_cov=24/18	polymorphism_frequency=4.242e-01	polymorphism_score=122.2	prediction=polymorphism	ref_cov=27/30	total_cov=51/48
RA	440	.	NC_000913	1429364	0	T	C	bias_e_value=3343500	bias_p_value=0.720325	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.8	fisher_strand_p_value=0.419642	frequency=4.184e-01	ks_quality_p_value=0.840622	major_base=T	major_cov=27/30	major_frequency=5.816e-01	minor_base=C	minor_cov=23/18	new_cov=23/18	polymorphism_frequency=4.184e-01	polymorphism_score=123.3	prediction=polymorphism	ref_cov=27/30	total_cov=51/48
RA	441	.	NC_000913	1429404	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.7	fisher_strand_p_value=1	frequency=4.694e-01	ks_quality_p_value=1	major_base=C	major_cov=25/27	major_frequency=5.306e-01	minor_base=T	minor_cov=23/23	new_cov=23/23	polymorphism_frequency=4.694e-01	polymorphism_score=135.4	prediction=polymorphism	ref_cov=25/27	total_cov=48/50
RA	442	.	NC_000913	1429416	0	A	G	bias_e_value=4640270	bias_p_value=0.999702	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.0	fisher_strand_p_value=1	frequency=4.242e-01	ks_quality_p_value=0.975693	major_base=A	major_cov=31/26	major_frequency=5.758e-01	minor_base=G	minor_cov=22/20	new_cov=22/20	polymorphism_frequency=4.242e-01	polymorphism_score=126.2	prediction=polymorphism	ref_cov=31/26	total_cov=53/46
RA	443	.	NC_000913	1429417	0	C	T	bias_e_value=4534710	bias_p_value=0.97696	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.0	fisher_strand_p_value=1	frequency=4.200e-01	ks_quality_p_value=0.793165	major_base=C	major_cov=31/27	major_frequency=5.800e-01	minor_base=T	minor_cov=22/20	new_cov=22/20	polymorphism_frequency=4.200e-01	polymorphism_score=126.6	prediction=polymorphism	ref_cov=31/27	total_cov=53/47
RA	444	.	NC_000913	1429425	0	C	A	bias_e_value=4586570	bias_p_value=0.988134	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.4	fisher_strand_p_value=1	frequency=4.020e-01	ks_quality_p_value=0.849956	major_base=C	major_cov=32/29	major_frequency=5.980e-01	minor_base=A	minor_cov=21/20	new_cov=21/20	polymorphism_frequency=4.020e-01	polymorphism_score=104.0	prediction=polymorphism	ref_cov=32/29	total_cov=53/49
RA	445	.	NC_000913	1429435	0	G	A	bias_e_value=4573780	bias_p_value=0.985379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.0	fisher_strand_p_value=0.833942	frequency=3.750e-01	ks_quality_p_value=1	major_base=G	major_cov=32/28	major_frequency=6.250e-01	minor_base=A	minor_cov=18/18	new_cov=18/18	polymorphism_frequency=3.750e-01	polymorphism_score=97.8	prediction=polymorphism	ref_cov=32/28	total_cov=50/46
RA	446	.	NC_000913	1429442	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.3	fisher_strand_p_value=1	frequency=3.736e-01	ks_quality_p_value=1	major_base=A	major_cov=29/28	major_frequency=6.264e-01	minor_base=G	minor_cov=17/17	new_cov=17/17	polymorphism_frequency=3.736e-01	polymorphism_score=88.1	prediction=polymorphism	ref_cov=29/28	total_cov=46/46
RA	447	.	NC_000913	1429444	0	T	C	bias_e_value=4636130	bias_p_value=0.998811	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.2	fisher_strand_p_value=1	frequency=3.656e-01	ks_quality_p_value=0.951637	major_base=T	major_cov=30/29	major_frequency=6.344e-01	minor_base=C	minor_cov=17/17	new_cov=17/17	polymorphism_frequency=3.656e-01	polymorphism_score=99.0	prediction=polymorphism	ref_cov=30/29	total_cov=47/47
RA	448	.	NC_000913	1429453	0	C	T	bias_e_value=4640560	bias_p_value=0.999766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.7	fisher_strand_p_value=1	frequency=3.723e-01	ks_quality_p_value=0.978434	major_base=C	major_cov=30/29	major_frequency=6.277e-01	minor_base=T	minor_cov=17/18	new_cov=17/18	polymorphism_frequency=3.723e-01	polymorphism_score=101.1	prediction=polymorphism	ref_cov=30/29	total_cov=47/47
RA	449	.	NC_000913	1429454	0	A	G	bias_e_value=4613880	bias_p_value=0.994016	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.4	fisher_strand_p_value=1	frequency=3.723e-01	ks_quality_p_value=0.892619	major_base=A	major_cov=30/29	major_frequency=6.277e-01	minor_base=G	minor_cov=17/18	new_cov=17/18	polymorphism_frequency=3.723e-01	polymorphism_score=100.4	prediction=polymorphism	ref_cov=30/29	total_cov=47/47
RA	450	.	NC_000913	1429462	0	C	T	bias_e_value=663171	bias_p_value=0.142874	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.0	fisher_strand_p_value=0.647317	frequency=3.827e-01	ks_quality_p_value=0.0497625	major_base=C	major_cov=28/22	major_frequency=6.173e-01	minor_base=T	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.827e-01	polymorphism_score=90.3	prediction=polymorphism	ref_cov=28/22	total_cov=45/38
RA	451	.	NC_000913	1429463	0	C	G	bias_e_value=3654930	bias_p_value=0.787421	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.9	fisher_strand_p_value=0.496346	frequency=3.735e-01	ks_quality_p_value=0.853351	major_base=C	major_cov=30/22	major_frequency=6.265e-01	minor_base=G	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.735e-01	polymorphism_score=102.0	prediction=polymorphism	ref_cov=30/22	total_cov=45/38
RA	452	.	NC_000913	1429464	0	G	C	bias_e_value=1894810	bias_p_value=0.408219	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.4	fisher_strand_p_value=0.499364	frequency=3.780e-01	ks_quality_p_value=0.273236	major_base=G	major_cov=29/22	major_frequency=6.220e-01	minor_base=C	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.780e-01	polymorphism_score=111.1	prediction=polymorphism	ref_cov=29/22	total_cov=45/38
RA	453	.	NC_000913	1429466	0	G	C	bias_e_value=157771	bias_p_value=0.0339903	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.7	fisher_strand_p_value=0.242068	frequency=3.974e-01	ks_quality_p_value=0.0226207	major_base=G	major_cov=30/17	major_frequency=6.026e-01	minor_base=C	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.974e-01	polymorphism_score=109.0	prediction=polymorphism	ref_cov=30/17	total_cov=45/39
RA	454	.	NC_000913	1429470	0	C	T	bias_e_value=3095900	bias_p_value=0.666982	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.0	fisher_strand_p_value=0.503276	frequency=3.690e-01	ks_quality_p_value=0.605714	major_base=C	major_cov=30/23	major_frequency=6.310e-01	minor_base=T	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.690e-01	polymorphism_score=90.0	prediction=polymorphism	ref_cov=30/23	total_cov=45/39
RA	455	.	NC_000913	1429471	0	G	C	bias_e_value=3691480	bias_p_value=0.795295	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.6	fisher_strand_p_value=0.503276	frequency=3.690e-01	ks_quality_p_value=0.860046	major_base=G	major_cov=30/23	major_frequency=6.310e-01	minor_base=C	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.690e-01	polymorphism_score=109.6	prediction=polymorphism	ref_cov=30/23	total_cov=45/39
RA	456	.	NC_000913	1429474	0	A	G	bias_e_value=3734160	bias_p_value=0.804489	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.4	fisher_strand_p_value=0.503276	frequency=3.690e-01	ks_quality_p_value=0.8822	major_base=A	major_cov=30/23	major_frequency=6.310e-01	minor_base=G	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.690e-01	polymorphism_score=91.2	prediction=polymorphism	ref_cov=30/23	total_cov=45/39
RA	457	.	NC_000913	1429475	0	A	G	bias_e_value=3644630	bias_p_value=0.785201	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.7	fisher_strand_p_value=0.503276	frequency=3.690e-01	ks_quality_p_value=0.836482	major_base=A	major_cov=30/23	major_frequency=6.310e-01	minor_base=G	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.690e-01	polymorphism_score=86.8	prediction=polymorphism	ref_cov=30/23	total_cov=45/39
RA	458	.	NC_000913	1429479	0	A	T	bias_e_value=3456830	bias_p_value=0.744742	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.1	fisher_strand_p_value=0.499364	frequency=3.780e-01	ks_quality_p_value=0.754908	major_base=A	major_cov=29/22	major_frequency=6.220e-01	minor_base=T	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.780e-01	polymorphism_score=123.8	prediction=polymorphism	ref_cov=29/22	total_cov=44/38
RA	459	.	NC_000913	1429482	0	C	T	bias_e_value=4308350	bias_p_value=0.928193	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.6	fisher_strand_p_value=0.650656	frequency=3.780e-01	ks_quality_p_value=0.992561	major_base=C	major_cov=28/23	major_frequency=6.220e-01	minor_base=T	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.780e-01	polymorphism_score=88.1	prediction=polymorphism	ref_cov=28/23	total_cov=43/39
RA	460	.	NC_000913	1429484	0	G	A	bias_e_value=4150470	bias_p_value=0.894179	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.8	fisher_strand_p_value=0.656386	frequency=3.735e-01	ks_quality_p_value=0.878722	major_base=G	major_cov=28/24	major_frequency=6.265e-01	minor_base=A	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.735e-01	polymorphism_score=87.0	prediction=polymorphism	ref_cov=28/24	total_cov=43/40
RA	461	.	NC_000913	1429492	0	T	A	bias_e_value=4313340	bias_p_value=0.929267	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.7	fisher_strand_p_value=0.649132	frequency=3.704e-01	ks_quality_p_value=0.998694	major_base=T	major_cov=27/24	major_frequency=6.296e-01	minor_base=A	minor_cov=14/16	new_cov=14/16	polymorphism_frequency=3.704e-01	polymorphism_score=113.5	prediction=polymorphism	ref_cov=27/24	total_cov=41/40
RA	462	.	NC_000913	1429493	0	G	A	bias_e_value=4561750	bias_p_value=0.982787	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.8	fisher_strand_p_value=0.820287	frequency=3.780e-01	ks_quality_p_value=1	major_base=G	major_cov=27/24	major_frequency=6.220e-01	minor_base=A	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.780e-01	polymorphism_score=83.2	prediction=polymorphism	ref_cov=27/24	total_cov=42/40
RA	463	.	NC_000913	1429495	0	G	T	bias_e_value=4556040	bias_p_value=0.981555	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.8	fisher_strand_p_value=0.820287	frequency=3.780e-01	ks_quality_p_value=0.992561	major_base=G	major_cov=27/24	major_frequency=6.220e-01	minor_base=T	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.780e-01	polymorphism_score=88.8	prediction=polymorphism	ref_cov=27/24	total_cov=42/40
RA	464	.	NC_000913	1429510	0	A	C	bias_e_value=4638050	bias_p_value=0.999224	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.6	fisher_strand_p_value=1	frequency=4.405e-01	ks_quality_p_value=0.960862	major_base=A	major_cov=26/21	major_frequency=5.595e-01	minor_base=C	minor_cov=21/16	new_cov=21/16	polymorphism_frequency=4.405e-01	polymorphism_score=117.8	prediction=polymorphism	ref_cov=26/21	total_cov=47/37
RA	465	.	NC_000913	1429522	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.6	fisher_strand_p_value=1	frequency=4.615e-01	ks_quality_p_value=1	major_base=A	major_cov=27/22	major_frequency=5.385e-01	minor_base=C	minor_cov=24/18	new_cov=24/18	polymorphism_frequency=4.615e-01	polymorphism_score=135.0	prediction=polymorphism	ref_cov=27/22	total_cov=51/40
RA	466	.	NC_000913	1429534	0	C	T	bias_e_value=4640850	bias_p_value=0.999827	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.5	fisher_strand_p_value=1	frequency=4.681e-01	ks_quality_p_value=0.981451	major_base=C	major_cov=27/23	major_frequency=5.319e-01	minor_base=T	minor_cov=24/20	new_cov=24/20	polymorphism_frequency=4.681e-01	polymorphism_score=131.4	prediction=polymorphism	ref_cov=27/23	total_cov=52/43
RA	467	.	NC_000913	1429537	0	G	A	bias_e_value=4307650	bias_p_value=0.928042	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.9	fisher_strand_p_value=1	frequency=4.787e-01	ks_quality_p_value=0.64547	major_base=G	major_cov=27/22	major_frequency=5.213e-01	minor_base=A	minor_cov=25/20	new_cov=25/20	polymorphism_frequency=4.787e-01	polymorphism_score=133.8	prediction=polymorphism	ref_cov=27/22	total_cov=52/42
RA	468	.	NC_000913	1429543	0	G	A	bias_e_value=4358280	bias_p_value=0.93895	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.8	fisher_strand_p_value=1	frequency=4.632e-01	ks_quality_p_value=0.671579	major_base=G	major_cov=28/23	major_frequency=5.368e-01	minor_base=A	minor_cov=24/20	new_cov=24/20	polymorphism_frequency=4.632e-01	polymorphism_score=132.2	prediction=polymorphism	ref_cov=28/23	total_cov=52/44
RA	469	.	NC_000913	1429550	0	T	G	bias_e_value=4379910	bias_p_value=0.943611	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.2	fisher_strand_p_value=0.683552	frequency=4.592e-01	ks_quality_p_value=1	major_base=T	major_cov=29/24	major_frequency=5.408e-01	minor_base=G	minor_cov=27/18	new_cov=27/18	polymorphism_frequency=4.592e-01	polymorphism_score=131.0	prediction=polymorphism	ref_cov=29/24	total_cov=56/42
RA	470	.	NC_000913	1429551	0	C	A	bias_e_value=4384940	bias_p_value=0.944693	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.4	fisher_strand_p_value=0.686412	frequency=4.639e-01	ks_quality_p_value=1	major_base=C	major_cov=29/23	major_frequency=5.361e-01	minor_base=A	minor_cov=27/18	new_cov=27/18	polymorphism_frequency=4.639e-01	polymorphism_score=123.6	prediction=polymorphism	ref_cov=29/23	total_cov=56/42
RA	471	.	NC_000913	1429558	0	T	C	bias_e_value=3420650	bias_p_value=0.736947	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.3	fisher_strand_p_value=0.841163	frequency=4.706e-01	ks_quality_p_value=0.43876	major_base=T	major_cov=31/23	major_frequency=5.294e-01	minor_base=C	minor_cov=29/19	new_cov=29/19	polymorphism_frequency=4.706e-01	polymorphism_score=151.7	prediction=polymorphism	ref_cov=31/23	total_cov=60/42
RA	472	.	NC_000913	1429562	0	A	G	bias_e_value=4252480	bias_p_value=0.916156	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.3	fisher_strand_p_value=0.687314	frequency=4.608e-01	ks_quality_p_value=0.901375	major_base=A	major_cov=31/24	major_frequency=5.392e-01	minor_base=G	minor_cov=29/18	new_cov=29/18	polymorphism_frequency=4.608e-01	polymorphism_score=146.6	prediction=polymorphism	ref_cov=31/24	total_cov=61/43
RA	473	.	NC_000913	1429569	0	G	A	bias_e_value=2760150	bias_p_value=0.594647	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.0	fisher_strand_p_value=0.323262	frequency=4.808e-01	ks_quality_p_value=0.769077	major_base=G	major_cov=29/25	major_frequency=5.192e-01	minor_base=A	minor_cov=32/18	new_cov=32/18	polymorphism_frequency=4.808e-01	polymorphism_score=153.5	prediction=polymorphism	ref_cov=29/25	total_cov=61/43
RA	474	.	NC_000913	1429571	0	A	G	bias_e_value=2777560	bias_p_value=0.598399	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.5	fisher_strand_p_value=0.323262	frequency=4.808e-01	ks_quality_p_value=0.777448	major_base=A	major_cov=29/25	major_frequency=5.192e-01	minor_base=G	minor_cov=32/18	new_cov=32/18	polymorphism_frequency=4.808e-01	polymorphism_score=152.8	prediction=polymorphism	ref_cov=29/25	total_cov=61/43
RA	475	.	NC_000913	1429580	0	A	G	bias_e_value=2753350	bias_p_value=0.593183	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.3	fisher_strand_p_value=0.317307	frequency=4.800e-01	ks_quality_p_value=0.7802	major_base=A	major_cov=27/25	major_frequency=5.200e-01	minor_base=G	minor_cov=30/18	new_cov=30/18	polymorphism_frequency=4.800e-01	polymorphism_score=145.9	prediction=polymorphism	ref_cov=27/25	total_cov=57/43
RA	476	.	NC_000913	1429597	0	A	G	bias_e_value=3778520	bias_p_value=0.814046	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.1	fisher_strand_p_value=0.541056	frequency=4.848e-01	ks_quality_p_value=0.842718	major_base=A	major_cov=28/23	major_frequency=5.152e-01	minor_base=G	minor_cov=30/18	new_cov=30/18	polymorphism_frequency=4.848e-01	polymorphism_score=146.1	prediction=polymorphism	ref_cov=28/23	total_cov=58/41
RA	477	.	NC_000913	1429598	0	T	G	bias_e_value=4359380	bias_p_value=0.939186	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.0	fisher_strand_p_value=0.684528	frequency=4.949e-01	ks_quality_p_value=0.98195	major_base=T	major_cov=28/22	major_frequency=5.051e-01	minor_base=G	minor_cov=30/19	new_cov=30/19	polymorphism_frequency=4.949e-01	polymorphism_score=153.8	prediction=polymorphism	ref_cov=28/22	total_cov=58/41
RA	478	.	NC_000913	1429599	0	C	A	bias_e_value=3834410	bias_p_value=0.826088	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.7	fisher_strand_p_value=0.541056	frequency=4.848e-01	ks_quality_p_value=0.871683	major_base=C	major_cov=28/23	major_frequency=5.152e-01	minor_base=A	minor_cov=30/18	new_cov=30/18	polymorphism_frequency=4.848e-01	polymorphism_score=125.0	prediction=polymorphism	ref_cov=28/23	total_cov=58/41
RA	479	.	NC_000913	1429609	0	T	C	bias_e_value=4054650	bias_p_value=0.873535	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.5	fisher_strand_p_value=0.551802	frequency=5.000e-01	ks_quality_p_value=0.980953	major_base=C	major_cov=32/20	major_frequency=5.000e-01	minor_base=T	minor_cov=28/24	new_cov=32/20	polymorphism_frequency=5.000e-01	polymorphism_score=158.3	prediction=polymorphism	ref_cov=28/24	total_cov=60/44
RA	480	.	NC_000913	1429612	0	C	A	bias_e_value=2532300	bias_p_value=0.545561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.0	fisher_strand_p_value=0.551802	frequency=5.000e-01	ks_quality_p_value=0.389727	major_base=C	major_cov=28/24	major_frequency=5.000e-01	minor_base=A	minor_cov=32/20	new_cov=32/20	polymorphism_frequency=5.000e-01	polymorphism_score=140.7	prediction=polymorphism	ref_cov=28/24	total_cov=60/44
RA	481	.	NC_000913	1429615	0	T	C	bias_e_value=4379440	bias_p_value=0.943509	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.0	fisher_strand_p_value=0.69292	frequency=4.857e-01	ks_quality_p_value=0.986092	major_base=T	major_cov=30/24	major_frequency=5.143e-01	minor_base=C	minor_cov=31/20	new_cov=31/20	polymorphism_frequency=4.857e-01	polymorphism_score=146.2	prediction=polymorphism	ref_cov=30/24	total_cov=62/44
RA	482	.	NC_000913	1429632	0	G	A	bias_e_value=2852370	bias_p_value=0.614517	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.9	fisher_strand_p_value=0.452028	frequency=4.821e-01	ks_quality_p_value=0.582242	major_base=G	major_cov=30/28	major_frequency=5.179e-01	minor_base=A	minor_cov=32/22	new_cov=32/22	polymorphism_frequency=4.821e-01	polymorphism_score=162.0	prediction=polymorphism	ref_cov=30/28	total_cov=62/50
RA	483	.	NC_000913	1429682	0	T	G	bias_e_value=3858280	bias_p_value=0.831229	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.9	fisher_strand_p_value=0.571362	frequency=4.643e-01	ks_quality_p_value=0.837537	major_base=T	major_cov=31/29	major_frequency=5.357e-01	minor_base=G	minor_cov=30/22	new_cov=30/22	polymorphism_frequency=4.643e-01	polymorphism_score=168.0	prediction=polymorphism	ref_cov=31/29	total_cov=62/51
RA	484	.	NC_000913	1429692	0	T	A	bias_e_value=2248320	bias_p_value=0.484379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.0	fisher_strand_p_value=0.177563	frequency=4.414e-01	ks_quality_p_value=0.999709	major_base=T	major_cov=32/30	major_frequency=5.586e-01	minor_base=A	minor_cov=32/17	new_cov=32/17	polymorphism_frequency=4.414e-01	polymorphism_score=194.8	prediction=polymorphism	ref_cov=32/30	total_cov=64/49
RA	485	.	NC_000913	1429702	0	A	C	bias_e_value=668222	bias_p_value=0.143962	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.9	fisher_strand_p_value=0.0325293	frequency=4.444e-01	ks_quality_p_value=1	major_base=A	major_cov=27/33	major_frequency=5.556e-01	minor_base=C	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.444e-01	polymorphism_score=145.3	prediction=polymorphism	ref_cov=27/33	total_cov=59/49
RA	486	.	NC_000913	1429708	0	A	G	bias_e_value=583763	bias_p_value=0.125766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.0	fisher_strand_p_value=0.0300794	frequency=4.571e-01	ks_quality_p_value=0.909099	major_base=A	major_cov=25/32	major_frequency=5.429e-01	minor_base=G	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.571e-01	polymorphism_score=146.8	prediction=polymorphism	ref_cov=25/32	total_cov=57/48
RA	487	.	NC_000913	1429714	0	A	C	bias_e_value=1295880	bias_p_value=0.279185	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.9	fisher_strand_p_value=0.0806196	frequency=4.364e-01	ks_quality_p_value=0.978246	major_base=A	major_cov=30/32	major_frequency=5.636e-01	minor_base=C	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.364e-01	polymorphism_score=142.9	prediction=polymorphism	ref_cov=30/32	total_cov=62/48
RA	488	.	NC_000913	1429724	0	A	G	bias_e_value=964433	bias_p_value=0.207778	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.4	fisher_strand_p_value=0.0526914	frequency=4.486e-01	ks_quality_p_value=1	major_base=A	major_cov=28/31	major_frequency=5.514e-01	minor_base=G	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.486e-01	polymorphism_score=138.2	prediction=polymorphism	ref_cov=28/31	total_cov=61/47
RA	489	.	NC_000913	1429732	0	G	A	bias_e_value=944165	bias_p_value=0.203411	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.3	fisher_strand_p_value=0.0811464	frequency=4.404e-01	ks_quality_p_value=0.631141	major_base=G	major_cov=30/31	major_frequency=5.596e-01	minor_base=A	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.404e-01	polymorphism_score=140.4	prediction=polymorphism	ref_cov=30/31	total_cov=63/47
RA	490	.	NC_000913	1429735	0	A	G	bias_e_value=1682850	bias_p_value=0.362553	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.4	fisher_strand_p_value=0.121342	frequency=4.324e-01	ks_quality_p_value=0.943275	major_base=A	major_cov=32/31	major_frequency=5.676e-01	minor_base=G	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.324e-01	polymorphism_score=141.0	prediction=polymorphism	ref_cov=32/31	total_cov=64/47
RA	491	.	NC_000913	1429741	0	A	G	bias_e_value=1731760	bias_p_value=0.373092	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.2	fisher_strand_p_value=0.119369	frequency=4.404e-01	ks_quality_p_value=1	major_base=A	major_cov=31/30	major_frequency=5.596e-01	minor_base=G	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.404e-01	polymorphism_score=140.8	prediction=polymorphism	ref_cov=31/30	total_cov=63/46
RA	492	.	NC_000913	1429744	0	T	C	bias_e_value=2119420	bias_p_value=0.45661	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.5	fisher_strand_p_value=0.17112	frequency=4.312e-01	ks_quality_p_value=0.945882	major_base=T	major_cov=32/30	major_frequency=5.688e-01	minor_base=C	minor_cov=31/16	new_cov=31/16	polymorphism_frequency=4.312e-01	polymorphism_score=142.3	prediction=polymorphism	ref_cov=32/30	total_cov=64/46
RA	493	.	NC_000913	1429747	0	G	C	bias_e_value=1387770	bias_p_value=0.298981	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.7	fisher_strand_p_value=0.122537	frequency=4.352e-01	ks_quality_p_value=0.708455	major_base=G	major_cov=31/30	major_frequency=5.648e-01	minor_base=C	minor_cov=31/16	new_cov=31/16	polymorphism_frequency=4.352e-01	polymorphism_score=163.7	prediction=polymorphism	ref_cov=31/30	total_cov=64/46
RA	494	.	NC_000913	1429750	0	C	T	bias_e_value=1774220	bias_p_value=0.382238	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.1	fisher_strand_p_value=0.123709	frequency=4.364e-01	ks_quality_p_value=1	major_base=C	major_cov=32/30	major_frequency=5.636e-01	minor_base=T	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.364e-01	polymorphism_score=134.7	prediction=polymorphism	ref_cov=32/30	total_cov=64/46
RA	495	.	NC_000913	1429753	0	G	A	bias_e_value=1016550	bias_p_value=0.219007	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.8	fisher_strand_p_value=0.116876	frequency=4.444e-01	ks_quality_p_value=0.483876	major_base=G	major_cov=30/30	major_frequency=5.556e-01	minor_base=A	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.444e-01	polymorphism_score=130.8	prediction=polymorphism	ref_cov=30/30	total_cov=62/46
RA	496	.	NC_000913	1429756	0	C	A	bias_e_value=1585430	bias_p_value=0.341565	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.4	fisher_strand_p_value=0.123709	frequency=4.364e-01	ks_quality_p_value=0.84847	major_base=C	major_cov=32/30	major_frequency=5.636e-01	minor_base=A	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.364e-01	polymorphism_score=116.3	prediction=polymorphism	ref_cov=32/30	total_cov=64/46
RA	497	.	NC_000913	1429759	0	G	A	bias_e_value=1747980	bias_p_value=0.376585	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.1	fisher_strand_p_value=0.123709	frequency=4.364e-01	ks_quality_p_value=0.978246	major_base=G	major_cov=32/30	major_frequency=5.636e-01	minor_base=A	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.364e-01	polymorphism_score=135.7	prediction=polymorphism	ref_cov=32/30	total_cov=64/46
RA	498	.	NC_000913	1429767	0	C	T	bias_e_value=2092390	bias_p_value=0.450785	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.6	fisher_strand_p_value=0.174072	frequency=4.444e-01	ks_quality_p_value=0.911565	major_base=C	major_cov=32/28	major_frequency=5.556e-01	minor_base=T	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=4.444e-01	polymorphism_score=136.7	prediction=polymorphism	ref_cov=32/28	total_cov=64/44
RA	499	.	NC_000913	1429780	0	A	G	bias_e_value=4057190	bias_p_value=0.874083	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.0	fisher_strand_p_value=0.549783	frequency=4.175e-01	ks_quality_p_value=0.986181	major_base=A	major_cov=34/26	major_frequency=5.825e-01	minor_base=G	minor_cov=27/16	new_cov=27/16	polymorphism_frequency=4.175e-01	polymorphism_score=121.7	prediction=polymorphism	ref_cov=34/26	total_cov=61/42
RA	500	.	NC_000913	1429783	0	G	A	bias_e_value=3566250	bias_p_value=0.768315	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.5	fisher_strand_p_value=0.417291	frequency=4.455e-01	ks_quality_p_value=0.96328	major_base=G	major_cov=31/25	major_frequency=5.545e-01	minor_base=A	minor_cov=29/16	new_cov=29/16	polymorphism_frequency=4.455e-01	polymorphism_score=124.8	prediction=polymorphism	ref_cov=31/25	total_cov=60/42
RA	501	.	NC_000913	1429816	0	C	T	bias_e_value=1282260	bias_p_value=0.276252	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.7	fisher_strand_p_value=0.0901626	frequency=3.265e-01	ks_quality_p_value=0.861933	major_base=C	major_cov=31/35	major_frequency=6.735e-01	minor_base=T	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.265e-01	polymorphism_score=88.5	prediction=polymorphism	ref_cov=31/35	total_cov=52/46
RA	502	.	NC_000913	1429820	0	A	G	bias_e_value=1826430	bias_p_value=0.393487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.3	fisher_strand_p_value=0.133121	frequency=3.265e-01	ks_quality_p_value=0.970152	major_base=A	major_cov=32/34	major_frequency=6.735e-01	minor_base=G	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.265e-01	polymorphism_score=88.2	prediction=polymorphism	ref_cov=32/34	total_cov=53/45
RA	503	.	NC_000913	1429823	0	A	C	bias_e_value=1823730	bias_p_value=0.392905	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.6	fisher_strand_p_value=0.133121	frequency=3.265e-01	ks_quality_p_value=0.968016	major_base=A	major_cov=32/34	major_frequency=6.735e-01	minor_base=C	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.265e-01	polymorphism_score=90.0	prediction=polymorphism	ref_cov=32/34	total_cov=53/45
RA	504	.	NC_000913	1429851	0	G	A	bias_e_value=4274250	bias_p_value=0.920847	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.0	fisher_strand_p_value=0.629492	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=30/30	major_frequency=7.143e-01	minor_base=A	minor_cov=14/10	new_cov=14/10	polymorphism_frequency=2.857e-01	polymorphism_score=56.2	prediction=polymorphism	ref_cov=30/30	total_cov=45/40
RA	505	.	NC_000913	1429858	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.2	fisher_strand_p_value=1	frequency=2.532e-01	ks_quality_p_value=1	major_base=C	major_cov=30/29	major_frequency=7.468e-01	minor_base=T	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=2.532e-01	polymorphism_score=46.0	prediction=polymorphism	ref_cov=30/29	total_cov=42/39
RA	506	.	NC_000913	1429861	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.3	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=31/29	major_frequency=7.500e-01	minor_base=C	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=2.500e-01	polymorphism_score=52.7	prediction=polymorphism	ref_cov=31/29	total_cov=42/39
RA	507	.	NC_000913	1429863	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.2	fisher_strand_p_value=1	frequency=2.593e-01	ks_quality_p_value=1	major_base=A	major_cov=31/29	major_frequency=7.407e-01	minor_base=G	minor_cov=11/10	new_cov=11/10	polymorphism_frequency=2.593e-01	polymorphism_score=48.9	prediction=polymorphism	ref_cov=31/29	total_cov=42/39
RA	508	.	NC_000913	1429888	0	C	T	bias_e_value=4616810	bias_p_value=0.994647	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.6	fisher_strand_p_value=1	frequency=2.297e-01	ks_quality_p_value=0.898332	major_base=C	major_cov=27/30	major_frequency=7.703e-01	minor_base=T	minor_cov=8/9	new_cov=8/9	polymorphism_frequency=2.297e-01	polymorphism_score=41.5	prediction=polymorphism	ref_cov=27/30	total_cov=35/39
RA	509	.	NC_000913	1434642	0	G	A	bias_e_value=2599400	bias_p_value=0.560016	consensus_reject=FREQUENCY_CUTOFF	consensus_score=311.8	fisher_strand_p_value=0.739492	frequency=2.833e-01	ks_quality_p_value=0.303713	major_base=G	major_cov=75/54	major_frequency=7.167e-01	minor_base=A	minor_cov=28/23	new_cov=28/23	polymorphism_frequency=2.833e-01	polymorphism_score=141.4	prediction=polymorphism	ref_cov=75/54	total_cov=104/78
RA	510	.	NC_000913	1466432	0	A	G	bias_e_value=1543480	bias_p_value=0.332529	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.9	fisher_strand_p_value=0.100988	frequency=3.175e-01	ks_quality_p_value=1	major_base=A	major_cov=21/22	major_frequency=6.825e-01	minor_base=G	minor_cov=5/15	new_cov=5/15	polymorphism_frequency=3.175e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=21/22	total_cov=26/37
RA	511	.	NC_000913	1466438	0	T	G	bias_e_value=4177110	bias_p_value=0.899919	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.1	fisher_strand_p_value=0.587387	frequency=3.175e-01	ks_quality_p_value=1	major_base=T	major_cov=19/24	major_frequency=6.825e-01	minor_base=G	minor_cov=7/13	new_cov=7/13	polymorphism_frequency=3.175e-01	polymorphism_score=32.8	prediction=polymorphism	ref_cov=19/24	total_cov=26/37
RA	512	.	NC_000913	1470627	0	C	A	bias_e_value=0.000144083	bias_p_value=3.10413e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.8	fisher_strand_p_value=1.08737e-12	frequency=2.385e-01	ks_quality_p_value=1	major_base=C	major_cov=32/67	major_frequency=7.615e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.385e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=32/67	total_cov=63/68
RA	513	.	NC_000913	1479799	0	C	T	consensus_score=302.4	frequency=1	major_base=T	major_cov=52/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/34
RA	514	.	NC_000913	1553310	0	C	T	consensus_score=294.5	frequency=1	major_base=T	major_cov=40/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/51
RA	515	.	NC_000913	1600234	0	C	T	consensus_score=264.0	frequency=1	major_base=T	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	516	.	NC_000913	1601098	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=330.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/44	major_frequency=9.896e-01	minor_base=C	minor_cov=1/0	new_cov=51/44	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/44
RA	517	.	NC_000913	1601103	0	C	T	consensus_score=342.5	frequency=1	major_base=T	major_cov=52/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	518	.	NC_000913	1617930	0	C	A	bias_e_value=0.057882	bias_p_value=1.24701e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.6	fisher_strand_p_value=5.5908e-10	frequency=2.766e-01	ks_quality_p_value=1	major_base=C	major_cov=23/45	major_frequency=7.234e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.766e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=23/45	total_cov=49/45
RA	519	.	NC_000913	1632712	0	A	G	consensus_score=136.7	frequency=1	major_base=G	major_cov=20/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	520	.	NC_000913	1632735	0	G	A	consensus_score=104.9	frequency=1	major_base=A	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	521	.	NC_000913	1632770	0	T	C	consensus_score=82.9	deleted=1	frequency=1	major_base=C	major_cov=14/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	522	.	NC_000913	1634370	0	T	C	bias_e_value=4640890	bias_p_value=0.999837	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.1	fisher_strand_p_value=1	frequency=5.455e-01	ks_quality_p_value=0.981982	major_base=C	major_cov=14/4	major_frequency=5.455e-01	minor_base=T	minor_cov=12/3	new_cov=14/4	polymorphism_frequency=5.455e-01	polymorphism_score=40.2	prediction=polymorphism	ref_cov=12/3	total_cov=26/7
RA	523	.	NC_000913	1634382	0	T	C	bias_e_value=2716630	bias_p_value=0.585273	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.3	fisher_strand_p_value=0.733415	frequency=6.410e-01	ks_quality_p_value=0.329885	major_base=C	major_cov=16/9	major_frequency=6.410e-01	minor_base=T	minor_cov=10/4	new_cov=16/9	polymorphism_frequency=6.410e-01	polymorphism_score=34.4	prediction=polymorphism	ref_cov=10/4	total_cov=26/13
RA	524	.	NC_000913	1634388	0	T	G	bias_e_value=4282620	bias_p_value=0.92265	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.3	fisher_strand_p_value=0.739704	frequency=6.154e-01	ks_quality_p_value=0.856305	major_base=G	major_cov=16/8	major_frequency=6.154e-01	minor_base=T	minor_cov=9/6	new_cov=16/8	polymorphism_frequency=6.154e-01	polymorphism_score=34.2	prediction=polymorphism	ref_cov=9/6	total_cov=25/14
RA	525	.	NC_000913	1634404	0	A	G	bias_e_value=4475350	bias_p_value=0.964171	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.3	fisher_strand_p_value=0.744541	frequency=6.190e-01	ks_quality_p_value=1	major_base=G	major_cov=17/9	major_frequency=6.190e-01	minor_base=A	minor_cov=9/7	new_cov=17/9	polymorphism_frequency=6.190e-01	polymorphism_score=36.3	prediction=polymorphism	ref_cov=9/7	total_cov=26/16
RA	526	.	NC_000913	1634482	0	T	C	bias_e_value=4639090	bias_p_value=0.999448	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.1	fisher_strand_p_value=1	frequency=5.776e-01	ks_quality_p_value=0.966948	major_base=C	major_cov=40/27	major_frequency=5.776e-01	minor_base=T	minor_cov=29/20	new_cov=40/27	polymorphism_frequency=5.776e-01	polymorphism_score=137.1	prediction=polymorphism	ref_cov=29/20	total_cov=69/47
RA	527	.	NC_000913	1634484	0	G	T	bias_e_value=3650970	bias_p_value=0.786567	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.4	fisher_strand_p_value=1	frequency=5.776e-01	ks_quality_p_value=0.422565	major_base=T	major_cov=40/27	major_frequency=5.776e-01	minor_base=G	minor_cov=29/20	new_cov=40/27	polymorphism_frequency=5.776e-01	polymorphism_score=160.8	prediction=polymorphism	ref_cov=29/20	total_cov=69/47
RA	528	.	NC_000913	1634569	0	A	T	bias_e_value=4512370	bias_p_value=0.972148	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.9	fisher_strand_p_value=0.773461	frequency=5.572e-01	ks_quality_p_value=1	major_base=T	major_cov=68/44	major_frequency=5.572e-01	minor_base=A	minor_cov=52/37	new_cov=68/44	polymorphism_frequency=5.572e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=52/37	total_cov=121/82
RA	529	.	NC_000913	1634571	0	C	T	bias_e_value=4133920	bias_p_value=0.890614	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.1	fisher_strand_p_value=0.57185	frequency=5.485e-01	ks_quality_p_value=0.997408	major_base=T	major_cov=68/45	major_frequency=5.485e-01	minor_base=C	minor_cov=52/41	new_cov=68/45	polymorphism_frequency=5.485e-01	polymorphism_score=286.7	prediction=polymorphism	ref_cov=52/41	total_cov=121/86
RA	530	.	NC_000913	1634578	0	T	C	bias_e_value=1548230	bias_p_value=0.333551	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.5	fisher_strand_p_value=0.888147	frequency=5.463e-01	ks_quality_p_value=0.114209	major_base=C	major_cov=65/47	major_frequency=5.463e-01	minor_base=T	minor_cov=53/40	new_cov=65/47	polymorphism_frequency=5.463e-01	polymorphism_score=280.3	prediction=polymorphism	ref_cov=53/40	total_cov=122/88
RA	531	.	NC_000913	1634597	0	C	A	bias_e_value=4187680	bias_p_value=0.902196	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.8	fisher_strand_p_value=0.593217	frequency=5.463e-01	ks_quality_p_value=0.997436	major_base=A	major_cov=72/52	major_frequency=5.463e-01	minor_base=C	minor_cov=56/47	new_cov=72/52	polymorphism_frequency=5.463e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=56/47	total_cov=128/99
RA	532	.	NC_000913	1634658	0	A	G	bias_e_value=4476390	bias_p_value=0.964395	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.3	fisher_strand_p_value=0.79407	frequency=5.319e-01	ks_quality_p_value=0.938586	major_base=G	major_cov=62/63	major_frequency=5.319e-01	minor_base=A	minor_cov=57/53	new_cov=62/63	polymorphism_frequency=5.319e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=57/53	total_cov=119/117
RA	533	.	NC_000913	1634661	0	C	G	bias_e_value=4614860	bias_p_value=0.994228	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.6	fisher_strand_p_value=0.894496	frequency=5.459e-01	ks_quality_p_value=1	major_base=G	major_cov=62/63	major_frequency=5.459e-01	minor_base=C	minor_cov=50/54	new_cov=62/63	polymorphism_frequency=5.459e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=50/54	total_cov=112/117
RA	534	.	NC_000913	1634676	0	A	G	bias_e_value=4612020	bias_p_value=0.993615	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.1	fisher_strand_p_value=0.89176	frequency=5.438e-01	ks_quality_p_value=0.997069	major_base=G	major_cov=59/59	major_frequency=5.438e-01	minor_base=A	minor_cov=48/51	new_cov=59/59	polymorphism_frequency=5.438e-01	polymorphism_score=298.5	prediction=polymorphism	ref_cov=48/51	total_cov=108/110
RA	535	.	NC_000913	1634699	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.3	fisher_strand_p_value=1	frequency=5.472e-01	ks_quality_p_value=1	major_base=C	major_cov=59/57	major_frequency=5.472e-01	minor_base=A	minor_cov=49/47	new_cov=59/57	polymorphism_frequency=5.472e-01	polymorphism_score=284.8	prediction=polymorphism	ref_cov=49/47	total_cov=108/105
RA	536	.	NC_000913	1634724	0	G	A	bias_e_value=4609780	bias_p_value=0.993133	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.6	fisher_strand_p_value=0.885121	frequency=5.469e-01	ks_quality_p_value=1	major_base=A	major_cov=58/47	major_frequency=5.469e-01	minor_base=G	minor_cov=47/40	new_cov=58/47	polymorphism_frequency=5.469e-01	polymorphism_score=248.8	prediction=polymorphism	ref_cov=47/40	total_cov=105/88
RA	537	.	NC_000913	1634769	0	T	A	bias_e_value=4597380	bias_p_value=0.990463	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.9	fisher_strand_p_value=0.871427	frequency=4.581e-01	ks_quality_p_value=0.992748	major_base=T	major_cov=37/47	major_frequency=5.419e-01	minor_base=A	minor_cov=33/38	new_cov=33/38	polymorphism_frequency=4.581e-01	polymorphism_score=287.9	prediction=polymorphism	ref_cov=37/47	total_cov=71/85
RA	538	.	NC_000913	1634778	0	T	G	bias_e_value=4641430	bias_p_value=0.999951	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.0	fisher_strand_p_value=1	frequency=4.403e-01	ks_quality_p_value=0.990155	major_base=T	major_cov=41/48	major_frequency=5.597e-01	minor_base=G	minor_cov=33/37	new_cov=33/37	polymorphism_frequency=4.403e-01	polymorphism_score=227.9	prediction=polymorphism	ref_cov=41/48	total_cov=74/85
RA	539	.	NC_000913	1634799	0	A	G	bias_e_value=3467350	bias_p_value=0.747008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.6	fisher_strand_p_value=0.616103	frequency=3.946e-01	ks_quality_p_value=0.615651	major_base=A	major_cov=42/47	major_frequency=6.054e-01	minor_base=G	minor_cov=30/28	new_cov=30/28	polymorphism_frequency=3.946e-01	polymorphism_score=173.4	prediction=polymorphism	ref_cov=42/47	total_cov=73/76
RA	540	.	NC_000913	1636128	0	C	T	bias_e_value=2648270	bias_p_value=0.570545	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.4	fisher_strand_p_value=0.235742	frequency=2.330e-01	ks_quality_p_value=0.982932	major_base=C	major_cov=28/51	major_frequency=7.670e-01	minor_base=T	minor_cov=12/12	new_cov=12/12	polymorphism_frequency=2.330e-01	polymorphism_score=59.6	prediction=polymorphism	ref_cov=28/51	total_cov=40/63
RA	541	.	NC_000913	1636145	0	T	C	bias_e_value=3183080	bias_p_value=0.685765	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.1	fisher_strand_p_value=0.328333	frequency=2.200e-01	ks_quality_p_value=0.977689	major_base=T	major_cov=29/49	major_frequency=7.800e-01	minor_base=C	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=2.200e-01	polymorphism_score=56.7	prediction=polymorphism	ref_cov=29/49	total_cov=40/60
RA	542	.	NC_000913	1636382	0	C	A	bias_e_value=705870	bias_p_value=0.152073	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.3	fisher_strand_p_value=0.0413641	frequency=3.082e-01	ks_quality_p_value=0.844261	major_base=C	major_cov=70/31	major_frequency=6.918e-01	minor_base=A	minor_cov=23/22	new_cov=23/22	polymorphism_frequency=3.082e-01	polymorphism_score=119.9	prediction=polymorphism	ref_cov=70/31	total_cov=93/53
RA	543	.	NC_000913	1636413	0	C	A	bias_e_value=404190	bias_p_value=0.0870788	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.0	fisher_strand_p_value=0.026623	frequency=3.734e-01	ks_quality_p_value=0.646038	major_base=C	major_cov=69/30	major_frequency=6.266e-01	minor_base=A	minor_cov=30/29	new_cov=30/29	polymorphism_frequency=3.734e-01	polymorphism_score=163.1	prediction=polymorphism	ref_cov=69/30	total_cov=99/59
RA	544	.	NC_000913	1636423	0	T	C	bias_e_value=800804	bias_p_value=0.172526	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.9	fisher_strand_p_value=0.0425038	frequency=3.806e-01	ks_quality_p_value=0.968777	major_base=T	major_cov=65/31	major_frequency=6.194e-01	minor_base=C	minor_cov=30/29	new_cov=30/29	polymorphism_frequency=3.806e-01	polymorphism_score=175.9	prediction=polymorphism	ref_cov=65/31	total_cov=96/60
RA	545	.	NC_000913	1636455	0	G	A	bias_e_value=327112	bias_p_value=0.0704731	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.6	fisher_strand_p_value=0.127098	frequency=4.302e-01	ks_quality_p_value=0.104129	major_base=G	major_cov=64/38	major_frequency=5.698e-01	minor_base=A	minor_cov=39/38	new_cov=39/38	polymorphism_frequency=4.302e-01	polymorphism_score=227.3	prediction=polymorphism	ref_cov=64/38	total_cov=103/79
RA	546	.	NC_000913	1636484	0	C	T	bias_e_value=3200810	bias_p_value=0.689584	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.4	fisher_strand_p_value=0.324383	frequency=4.216e-01	ks_quality_p_value=1	major_base=C	major_cov=66/52	major_frequency=5.784e-01	minor_base=T	minor_cov=42/44	new_cov=42/44	polymorphism_frequency=4.216e-01	polymorphism_score=243.9	prediction=polymorphism	ref_cov=66/52	total_cov=111/96
RA	547	.	NC_000913	1636503	0	T	C	bias_e_value=2950720	bias_p_value=0.635704	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.6	fisher_strand_p_value=0.27943	frequency=4.305e-01	ks_quality_p_value=1	major_base=T	major_cov=72/55	major_frequency=5.695e-01	minor_base=C	minor_cov=47/49	new_cov=47/49	polymorphism_frequency=4.305e-01	polymorphism_score=285.6	prediction=polymorphism	ref_cov=72/55	total_cov=119/104
RA	548	.	NC_000913	1641002	0	T	C	consensus_score=488.7	frequency=1	major_base=C	major_cov=61/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/72
RA	549	.	NC_000913	1643679	0	A	T	consensus_score=199.8	frequency=1	major_base=T	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	550	.	NC_000913	1649971	0	C	T	consensus_score=315.0	frequency=1	major_base=T	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	551	.	NC_000913	1652331	0	T	C	consensus_score=396.2	frequency=1	major_base=C	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	552	.	NC_000913	1661610	0	C	A	bias_e_value=135.332	bias_p_value=2.9156e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.6	fisher_strand_p_value=2.06953e-06	frequency=2.051e-01	ks_quality_p_value=1	major_base=C	major_cov=48/45	major_frequency=7.949e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.051e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=48/45	total_cov=72/45
RA	553	.	NC_000913	1702757	0	C	T	consensus_score=244.4	frequency=1	major_base=T	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	554	.	NC_000913	1793377	0	T	.	bias_e_value=4641650	bias_p_value=1	consensus_score=255.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999301	major_base=.	major_cov=28/25	major_frequency=9.815e-01	minor_base=T	minor_cov=1/0	new_cov=28/25	polymorphism_frequency=9.815e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/0	total_cov=29/25
RA	555	.	NC_000913	1812509	0	G	T	bias_e_value=1.21124e-05	bias_p_value=2.6095e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=282.3	fisher_strand_p_value=8.38816e-14	frequency=2.621e-01	ks_quality_p_value=1	major_base=G	major_cov=69/38	major_frequency=7.379e-01	minor_base=T	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.621e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=69/38	total_cov=69/76
RA	556	.	NC_000913	1861311	0	C	T	consensus_score=396.7	frequency=1	major_base=T	major_cov=70/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/40
RA	557	.	NC_000913	1894839	0	T	C	bias_e_value=4641620	bias_p_value=0.999993	consensus_score=348.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996267	major_base=C	major_cov=47/45	major_frequency=9.892e-01	minor_base=.	minor_cov=1/0	new_cov=47/45	polymorphism_frequency=9.892e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	558	.	NC_000913	1922815	0	C	A	bias_e_value=6.20002	bias_p_value=1.33573e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.7	fisher_strand_p_value=7.68484e-08	frequency=2.439e-01	ks_quality_p_value=1	major_base=C	major_cov=28/65	major_frequency=7.561e-01	minor_base=A	minor_cov=26/4	new_cov=26/4	polymorphism_frequency=2.439e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=28/65	total_cov=54/69
RA	559	.	NC_000913	1944629	0	G	T	bias_e_value=0.0313405	bias_p_value=6.75201e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.7	fisher_strand_p_value=2.94249e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=39/21	major_frequency=6.667e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.333e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=39/21	total_cov=39/51
RA	560	.	NC_000913	1964254	0	A	C	consensus_score=308.1	frequency=1	major_base=C	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	561	.	NC_000913	2040433	0	C	A	consensus_score=323.4	frequency=1	major_base=A	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	562	.	NC_000913	2053308	0	C	A	bias_e_value=3.41773e-07	bias_p_value=7.36317e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.7	fisher_strand_p_value=2.11652e-15	frequency=2.685e-01	ks_quality_p_value=1	major_base=C	major_cov=36/73	major_frequency=7.315e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.685e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=36/73	total_cov=76/73
RA	563	.	NC_000913	2099484	0	G	T	bias_e_value=0.578006	bias_p_value=1.24526e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.8	fisher_strand_p_value=6.26108e-09	frequency=2.458e-01	ks_quality_p_value=1	major_base=G	major_cov=50/39	major_frequency=7.542e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.458e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=50/39	total_cov=50/68
RA	564	.	NC_000913	2099525	0	A	T	consensus_score=376.7	frequency=1	major_base=T	major_cov=52/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/55
RA	565	.	NC_000913	2111259	0	G	.	consensus_score=517.5	frequency=1	major_base=.	major_cov=47/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/59
RA	566	.	NC_000913	2155880	0	C	T	consensus_score=142.9	frequency=1	major_base=T	major_cov=15/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/30
RA	567	.	NC_000913	2173363	0	C	.	consensus_score=429.3	frequency=1	major_base=.	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	568	.	NC_000913	2173364	0	C	.	consensus_score=429.3	frequency=1	major_base=.	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	569	.	NC_000913	2173448	0	C	T	consensus_score=310.3	frequency=1	major_base=T	major_cov=40/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/56
RA	570	.	NC_000913	2224169	0	A	G	consensus_score=334.3	frequency=1	major_base=G	major_cov=38/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/51
RA	571	.	NC_000913	2237105	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=450.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=71/61	major_frequency=9.925e-01	minor_base=C	minor_cov=1/0	new_cov=71/61	polymorphism_frequency=9.925e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/61
RA	572	.	NC_000913	2264460	0	G	A	bias_e_value=3654740	bias_p_value=0.787379	consensus_score=306.9	fisher_strand_p_value=0.423913	frequency=1	ks_quality_p_value=0.999045	major_base=A	major_cov=53/38	major_frequency=9.891e-01	minor_base=C	minor_cov=0/1	new_cov=53/38	polymorphism_frequency=9.891e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	573	.	NC_000913	2264461	0	A	T	consensus_score=323.2	frequency=1	major_base=T	major_cov=53/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	574	.	NC_000913	2319078	0	C	A	bias_e_value=3732110	bias_p_value=0.804048	consensus_score=308.9	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.997755	major_base=A	major_cov=50/39	major_frequency=9.889e-01	minor_base=G	minor_cov=0/1	new_cov=50/39	polymorphism_frequency=9.889e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	575	.	NC_000913	2360550	0	C	.	bias_e_value=4641650	bias_p_value=1	consensus_score=432.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=45/45	major_frequency=9.890e-01	minor_base=C	minor_cov=1/0	new_cov=45/45	polymorphism_frequency=9.890e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=46/45
RA	576	.	NC_000913	2392233	0	C	G	consensus_score=320.0	frequency=1	major_base=G	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	577	.	NC_000913	2423891	0	C	T	consensus_score=310.5	frequency=1	major_base=T	major_cov=37/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/57
RA	578	.	NC_000913	2427716	0	C	A	bias_e_value=0.0802298	bias_p_value=1.72847e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.0	fisher_strand_p_value=7.87001e-10	frequency=2.414e-01	ks_quality_p_value=1	major_base=C	major_cov=34/54	major_frequency=7.586e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.414e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=34/54	total_cov=62/54
RA	579	.	NC_000913	2443447	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=239.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/36	major_frequency=9.863e-01	minor_base=C	minor_cov=1/0	new_cov=36/36	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	580	.	NC_000913	2473392	0	G	A	consensus_score=278.9	frequency=1	major_base=A	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	581	.	NC_000913	2473397	1	.	T	bias_e_value=4639090	bias_p_value=0.999447	consensus_score=247.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.966931	major_base=T	major_cov=43/36	major_frequency=9.518e-01	minor_base=.	minor_cov=2/2	new_cov=43/36	polymorphism_frequency=9.518e-01	polymorphism_score=7.8	prediction=consensus	ref_cov=2/2	total_cov=45/38
RA	582	.	NC_000913	2477264	0	T	C	bias_e_value=0.83147	bias_p_value=1.79132e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.4	fisher_strand_p_value=9.18352e-09	frequency=2.340e-01	ks_quality_p_value=1	major_base=T	major_cov=20/52	major_frequency=7.660e-01	minor_base=C	minor_cov=21/1	new_cov=21/1	polymorphism_frequency=2.340e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=20/52	total_cov=41/53
RA	583	.	NC_000913	2477265	0	A	C	bias_e_value=0.00126445	bias_p_value=2.72414e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.1	fisher_strand_p_value=1.03607e-11	frequency=2.553e-01	ks_quality_p_value=1	major_base=A	major_cov=17/53	major_frequency=7.447e-01	minor_base=C	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.553e-01	polymorphism_score=30.4	prediction=polymorphism	ref_cov=17/53	total_cov=41/53
RA	584	.	NC_000913	2510609	0	C	T	consensus_score=320.1	frequency=1	major_base=T	major_cov=32/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/58
RA	585	.	NC_000913	2587112	0	C	T	consensus_score=324.6	frequency=1	major_base=T	major_cov=59/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/37
RA	586	.	NC_000913	2630852	0	G	A	bias_e_value=3488600	bias_p_value=0.751587	consensus_score=476.3	fisher_strand_p_value=0.384058	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/85	major_frequency=9.928e-01	minor_base=C	minor_cov=1/0	new_cov=52/85	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/85
RA	587	.	NC_000913	2722838	0	G	T	bias_e_value=3.32086e-08	bias_p_value=7.15447e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.2	fisher_strand_p_value=1.92392e-16	frequency=3.628e-01	ks_quality_p_value=1	major_base=G	major_cov=53/19	major_frequency=6.372e-01	minor_base=T	minor_cov=0/41	new_cov=0/41	polymorphism_frequency=3.628e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=53/19	total_cov=53/60
RA	588	.	NC_000913	2732992	0	G	A	consensus_score=353.0	frequency=1	major_base=A	major_cov=61/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/42
RA	589	.	NC_000913	2745565	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=373.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/67	major_frequency=9.911e-01	minor_base=G	minor_cov=0/1	new_cov=44/67	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/68
RA	590	.	NC_000913	2804133	0	C	T	consensus_score=441.2	frequency=1	major_base=T	major_cov=47/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/79
RA	591	.	NC_000913	2814459	0	A	.	consensus_score=521.5	frequency=1	major_base=.	major_cov=54/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/52
RA	592	.	NC_000913	2814461	0	C	T	consensus_score=365.4	frequency=1	major_base=T	major_cov=54/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/52
RA	593	.	NC_000913	2818324	0	G	A	bias_e_value=3353490	bias_p_value=0.722478	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.9	fisher_strand_p_value=1	frequency=2.405e-01	ks_quality_p_value=0.354833	major_base=G	major_cov=26/34	major_frequency=7.595e-01	minor_base=A	minor_cov=8/11	new_cov=8/11	polymorphism_frequency=2.405e-01	polymorphism_score=41.3	prediction=polymorphism	ref_cov=26/34	total_cov=34/45
RA	594	.	NC_000913	2856087	0	G	T	bias_e_value=0.125178	bias_p_value=2.69683e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.5	fisher_strand_p_value=1.25455e-09	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=47/43	major_frequency=7.143e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.857e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=47/43	total_cov=47/79
RA	595	.	NC_000913	2867455	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=413.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=78/47	major_frequency=9.921e-01	minor_base=C	minor_cov=1/0	new_cov=78/47	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/47
RA	596	.	NC_000913	2871153	0	T	G	consensus_score=425.7	frequency=1	major_base=G	major_cov=72/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/46
RA	597	.	NC_000913	2920153	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=391.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/67	major_frequency=9.914e-01	minor_base=C	minor_cov=0/1	new_cov=48/67	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/68
RA	598	.	NC_000913	2954158	0	G	A	bias_e_value=3419260	bias_p_value=0.736648	consensus_score=390.8	fisher_strand_p_value=0.372727	frequency=1	ks_quality_p_value=0.989381	major_base=A	major_cov=40/69	major_frequency=9.909e-01	minor_base=G	minor_cov=1/0	new_cov=40/69	polymorphism_frequency=9.909e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=41/69
RA	599	.	NC_000913	2955385	0	C	T	consensus_score=323.1	frequency=1	major_base=T	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	600	.	NC_000913	2990480	0	C	A	bias_e_value=0.00017499	bias_p_value=3.76999e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.6	fisher_strand_p_value=1.33e-12	frequency=3.158e-01	ks_quality_p_value=1	major_base=C	major_cov=49/55	major_frequency=6.842e-01	minor_base=A	minor_cov=48/0	new_cov=48/0	polymorphism_frequency=3.158e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=49/55	total_cov=97/55
RA	601	.	NC_000913	3010122	0	G	A	consensus_score=481.3	frequency=1	major_base=A	major_cov=63/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/77
RA	602	.	NC_000913	3019751	0	C	T	bias_e_value=3878630	bias_p_value=0.835613	consensus_score=338.1	fisher_strand_p_value=0.484536	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/50	major_frequency=9.897e-01	minor_base=C	minor_cov=1/0	new_cov=46/50	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=47/50
RA	603	.	NC_000913	3032307	0	C	T	bias_e_value=2.25223e-05	bias_p_value=4.85222e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.5	fisher_strand_p_value=1.59255e-13	frequency=2.609e-01	ks_quality_p_value=1	major_base=C	major_cov=23/62	major_frequency=7.391e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.609e-01	polymorphism_score=34.2	prediction=polymorphism	ref_cov=23/62	total_cov=53/62
RA	604	.	NC_000913	3054886	0	G	T	bias_e_value=52.9163	bias_p_value=1.14003e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.1	fisher_strand_p_value=7.55172e-07	frequency=2.417e-01	ks_quality_p_value=1	major_base=G	major_cov=44/47	major_frequency=7.583e-01	minor_base=T	minor_cov=28/1	new_cov=28/1	polymorphism_frequency=2.417e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=44/47	total_cov=72/49
RA	605	.	NC_000913	3054894	0	G	T	bias_e_value=35.9807	bias_p_value=7.75169e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.0	fisher_strand_p_value=4.99818e-07	frequency=3.364e-01	ks_quality_p_value=1	major_base=G	major_cov=29/44	major_frequency=6.636e-01	minor_base=T	minor_cov=33/4	new_cov=33/4	polymorphism_frequency=3.364e-01	polymorphism_score=32.6	prediction=polymorphism	ref_cov=29/44	total_cov=62/48
RA	606	.	NC_000913	3063827	0	C	T	consensus_score=427.0	frequency=1	major_base=T	major_cov=68/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/56
RA	607	.	NC_000913	3076531	0	G	A	consensus_score=417.0	frequency=1	major_base=A	major_cov=62/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/55
RA	608	.	NC_000913	3127435	0	G	T	bias_e_value=3952710	bias_p_value=0.851573	consensus_score=352.9	fisher_strand_p_value=0.507289	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/62	major_frequency=9.820e-01	minor_base=G	minor_cov=0/2	new_cov=47/62	polymorphism_frequency=9.820e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=47/64
RA	609	.	NC_000913	3175234	0	C	T	bias_e_value=3918940	bias_p_value=0.844298	consensus_score=540.1	fisher_strand_p_value=0.496732	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=77/75	major_frequency=9.935e-01	minor_base=G	minor_cov=0/1	new_cov=77/75	polymorphism_frequency=9.935e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/76
RA	610	.	NC_000913	3191376	0	G	T	bias_e_value=0.00348497	bias_p_value=7.50804e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.5	fisher_strand_p_value=2.97487e-11	frequency=2.545e-01	ks_quality_p_value=1	major_base=G	major_cov=63/60	major_frequency=7.455e-01	minor_base=T	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=2.545e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=63/60	total_cov=63/102
RA	611	.	NC_000913	3208066	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=394.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998697	major_base=A	major_cov=64/53	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=64/53	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/53
RA	612	.	NC_000913	3220571	0	G	A	consensus_score=285.6	frequency=1	major_base=A	major_cov=29/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/50
RA	613	.	NC_000913	3221786	0	C	T	bias_e_value=4080980	bias_p_value=0.879208	consensus_score=487.0	fisher_strand_p_value=0.550666	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=89/46	major_frequency=9.854e-01	minor_base=C	minor_cov=2/0	new_cov=89/46	polymorphism_frequency=9.854e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=91/46
RA	614	.	NC_000913	3226224	0	G	T	bias_e_value=0.000678442	bias_p_value=1.46164e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.9	fisher_strand_p_value=5.42556e-12	frequency=2.324e-01	ks_quality_p_value=1	major_base=G	major_cov=68/41	major_frequency=7.676e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.324e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=68/41	total_cov=69/74
RA	615	.	NC_000913	3230486	0	C	T	bias_e_value=3917810	bias_p_value=0.844055	consensus_score=347.2	fisher_strand_p_value=0.496385	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/54	major_frequency=9.813e-01	minor_base=G	minor_cov=0/2	new_cov=51/54	polymorphism_frequency=9.813e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	616	.	NC_000913	3243050	0	G	A	bias_e_value=3916970	bias_p_value=0.843874	consensus_score=436.2	fisher_strand_p_value=0.496127	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/62	major_frequency=9.841e-01	minor_base=C	minor_cov=2/0	new_cov=62/62	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/62
RA	617	.	NC_000913	3291800	0	C	A	bias_e_value=2.04288e-05	bias_p_value=4.40119e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=296.1	fisher_strand_p_value=1.43975e-13	frequency=2.667e-01	ks_quality_p_value=1	major_base=C	major_cov=34/65	major_frequency=7.333e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.667e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=34/65	total_cov=70/65
RA	618	.	NC_000913	3329743	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=332.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/43	major_frequency=9.896e-01	minor_base=C	minor_cov=1/0	new_cov=52/43	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/43
RA	619	.	NC_000913	3388041	0	T	G	consensus_score=337.1	frequency=1	major_base=G	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	620	.	NC_000913	3431396	0	C	A	bias_e_value=5.98823e-05	bias_p_value=1.29011e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.8	fisher_strand_p_value=4.37968e-13	frequency=2.787e-01	ks_quality_p_value=1	major_base=C	major_cov=29/59	major_frequency=7.213e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.787e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=29/59	total_cov=63/59
RA	621	.	NC_000913	3432105	0	C	T	consensus_score=514.3	frequency=1	major_base=T	major_cov=83/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/70
RA	622	.	NC_000913	3433680	0	C	A	bias_e_value=0.0166924	bias_p_value=3.59621e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.0	fisher_strand_p_value=1.52351e-10	frequency=2.329e-01	ks_quality_p_value=1	major_base=C	major_cov=49/63	major_frequency=7.671e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.329e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=49/63	total_cov=83/63
RA	623	.	NC_000913	3443961	0	G	A	consensus_score=476.5	frequency=1	major_base=A	major_cov=84/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=84/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=84/51
RA	624	.	NC_000913	3443980	0	G	A	consensus_score=538.3	frequency=1	major_base=A	major_cov=89/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=89/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=89/62
RA	625	.	NC_000913	3452022	0	G	A	bias_e_value=3914640	bias_p_value=0.843373	consensus_score=382.6	fisher_strand_p_value=0.495413	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/55	major_frequency=9.818e-01	minor_base=C	minor_cov=2/0	new_cov=53/55	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/55
RA	626	.	NC_000913	3452218	0	G	A	bias_e_value=3816560	bias_p_value=0.822242	consensus_score=377.4	fisher_strand_p_value=0.46729	frequency=1	ks_quality_p_value=0.998414	major_base=A	major_cov=49/57	major_frequency=9.907e-01	minor_base=C	minor_cov=1/0	new_cov=49/57	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/57
RA	627	.	NC_000913	3457378	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=464.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=59/76	major_frequency=9.926e-01	minor_base=C	minor_cov=0/1	new_cov=59/76	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=59/77
RA	628	.	NC_000913	3458245	0	A	C	bias_e_value=3155360	bias_p_value=0.679794	consensus_score=409.6	fisher_strand_p_value=0.315789	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=35/78	major_frequency=9.912e-01	minor_base=A	minor_cov=1/0	new_cov=35/78	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=36/78
RA	629	.	NC_000913	3474425	0	T	G	bias_e_value=1337050	bias_p_value=0.288054	consensus_score=382.1	fisher_strand_p_value=0.0823878	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=61/45	major_frequency=9.725e-01	minor_base=T	minor_cov=0/3	new_cov=61/45	polymorphism_frequency=9.725e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=61/48
RA	630	.	NC_000913	3492293	0	A	G	bias_e_value=3704060	bias_p_value=0.798004	consensus_score=474.6	fisher_strand_p_value=0.43609	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=75/57	major_frequency=9.925e-01	minor_base=T	minor_cov=0/1	new_cov=75/57	polymorphism_frequency=9.925e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/58
RA	631	.	NC_000913	3506393	0	T	C	consensus_score=579.6	frequency=1	major_base=C	major_cov=82/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/74
RA	632	.	NC_000913	3560454	1	.	T	consensus_score=401.7	frequency=1	major_base=T	major_cov=58/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/61
RA	633	.	NC_000913	3560455	0	C	G	consensus_score=442.8	frequency=1	major_base=G	major_cov=58/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/61
RA	634	.	NC_000913	3562125	0	C	T	consensus_score=407.5	frequency=1	major_base=T	major_cov=39/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/77
RA	635	.	NC_000913	3563255	0	C	T	consensus_score=379.7	frequency=1	major_base=T	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	636	.	NC_000913	3586657	0	G	A	consensus_score=367.1	frequency=1	major_base=A	major_cov=53/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/53
RA	637	.	NC_000913	3626067	0	C	T	consensus_score=458.4	frequency=1	major_base=T	major_cov=64/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/74
RA	638	.	NC_000913	3638300	0	G	A	consensus_score=358.7	frequency=1	major_base=A	major_cov=40/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/65
RA	639	.	NC_000913	3682515	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=550.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=86/72	major_frequency=9.937e-01	minor_base=C	minor_cov=1/0	new_cov=86/72	polymorphism_frequency=9.937e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=87/72
RA	640	.	NC_000913	3692114	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=304.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/45	major_frequency=9.886e-01	minor_base=G	minor_cov=0/1	new_cov=42/45	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	641	.	NC_000913	3707947	0	C	A	consensus_score=634.1	frequency=1	major_base=A	major_cov=118/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=118/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=118/69
RA	642	.	NC_000913	3722230	0	G	T	bias_e_value=1.41172e-07	bias_p_value=3.04141e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=466.9	fisher_strand_p_value=8.5196e-16	frequency=2.098e-01	ks_quality_p_value=1	major_base=G	major_cov=102/60	major_frequency=7.902e-01	minor_base=T	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=2.098e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=102/60	total_cov=102/103
RA	643	.	NC_000913	3725176	0	T	G	consensus_score=491.9	frequency=1	major_base=G	major_cov=74/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/59
RA	644	.	NC_000913	3729955	0	G	A	consensus_score=490.4	frequency=1	major_base=A	major_cov=65/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/73
RA	645	.	NC_000913	3729956	0	G	A	bias_e_value=3832270	bias_p_value=0.825625	consensus_score=484.1	fisher_strand_p_value=0.471014	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=64/73	major_frequency=9.928e-01	minor_base=G	minor_cov=1/0	new_cov=64/73	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=65/73
RA	646	.	NC_000913	3741871	0	G	T	bias_e_value=3.86418e-06	bias_p_value=8.32501e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=325.7	fisher_strand_p_value=2.57827e-14	frequency=2.531e-01	ks_quality_p_value=1	major_base=G	major_cov=75/46	major_frequency=7.469e-01	minor_base=T	minor_cov=0/41	new_cov=0/41	polymorphism_frequency=2.531e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=75/46	total_cov=75/87
RA	647	.	NC_000913	3769447	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=624.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=77/98	major_frequency=9.943e-01	minor_base=G	minor_cov=0/1	new_cov=77/98	polymorphism_frequency=9.943e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=77/99
RA	648	.	NC_000913	3773040	0	G	.	bias_e_value=3402550	bias_p_value=0.733047	consensus_score=481.3	fisher_strand_p_value=0.366337	frequency=1	ks_quality_p_value=0.996837	major_base=.	major_cov=64/36	major_frequency=9.901e-01	minor_base=G	minor_cov=0/1	new_cov=64/36	polymorphism_frequency=9.901e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/1	total_cov=64/37
RA	649	.	NC_000913	3773041	0	G	.	bias_e_value=3402550	bias_p_value=0.733047	consensus_score=481.3	fisher_strand_p_value=0.366337	frequency=1	ks_quality_p_value=0.996837	major_base=.	major_cov=64/36	major_frequency=9.901e-01	minor_base=G	minor_cov=0/1	new_cov=64/36	polymorphism_frequency=9.901e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/1	total_cov=64/37
RA	650	.	NC_000913	3783983	0	G	A	consensus_score=537.3	frequency=1	major_base=A	major_cov=90/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=90/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=90/63
RA	651	.	NC_000913	3815883	1	.	C	bias_e_value=4270660	bias_p_value=0.920073	consensus_score=492.4	fisher_strand_p_value=0.628978	frequency=1	ks_quality_p_value=0.998165	major_base=C	major_cov=48/82	major_frequency=9.701e-01	minor_base=.	minor_cov=2/2	new_cov=48/82	polymorphism_frequency=9.701e-01	polymorphism_score=6.1	prediction=consensus	ref_cov=2/2	total_cov=53/84
RA	652	.	NC_000913	3823162	0	C	T	consensus_score=381.9	frequency=1	major_base=T	major_cov=36/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/76
RA	653	.	NC_000913	3835828	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=530.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=87/69	major_frequency=9.936e-01	minor_base=C	minor_cov=1/0	new_cov=87/69	polymorphism_frequency=9.936e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=88/69
RA	654	.	NC_000913	3837106	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=550.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=88/78	major_frequency=9.940e-01	minor_base=C	minor_cov=1/0	new_cov=88/78	polymorphism_frequency=9.940e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=90/78
RA	655	.	NC_000913	3837362	0	G	A	consensus_score=477.7	frequency=1	major_base=A	major_cov=71/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/63
RA	656	.	NC_000913	3837367	0	G	T	bias_e_value=1.15646e-06	bias_p_value=2.49148e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=326.6	fisher_strand_p_value=7.42987e-15	frequency=2.431e-01	ks_quality_p_value=1	major_base=G	major_cov=76/33	major_frequency=7.569e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.431e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=76/33	total_cov=76/68
RA	657	.	NC_000913	3841663	0	G	A	bias_e_value=55.9994	bias_p_value=1.20645e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.5	fisher_strand_p_value=8.02395e-07	frequency=2.439e-01	ks_quality_p_value=1	major_base=G	major_cov=41/52	major_frequency=7.561e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.439e-01	polymorphism_score=29.0	prediction=polymorphism	ref_cov=41/52	total_cov=42/83
RA	658	.	NC_000913	3843750	0	C	A	bias_e_value=0.000337376	bias_p_value=7.26844e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=352.5	fisher_strand_p_value=2.6273e-12	frequency=2.663e-01	ks_quality_p_value=1	major_base=C	major_cov=78/68	major_frequency=7.337e-01	minor_base=A	minor_cov=53/0	new_cov=53/0	polymorphism_frequency=2.663e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=78/68	total_cov=131/68
RA	659	.	NC_000913	3889668	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=397.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/56	major_frequency=9.912e-01	minor_base=G	minor_cov=0/1	new_cov=57/56	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/57
RA	660	.	NC_000913	3894233	0	C	T	consensus_score=501.1	frequency=1	major_base=T	major_cov=69/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/74
RA	661	.	NC_000913	3896780	0	C	A	bias_e_value=1.79223e-09	bias_p_value=3.8612e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=331.5	fisher_strand_p_value=9.60883e-18	frequency=2.655e-01	ks_quality_p_value=1	major_base=C	major_cov=44/86	major_frequency=7.345e-01	minor_base=A	minor_cov=47/0	new_cov=47/0	polymorphism_frequency=2.655e-01	polymorphism_score=28.8	prediction=polymorphism	ref_cov=44/86	total_cov=91/86
RA	662	.	NC_000913	3896888	0	C	T	consensus_score=584.9	frequency=1	major_base=T	major_cov=65/110	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/110	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/110
RA	663	.	NC_000913	3899297	0	C	T	bias_e_value=2276160	bias_p_value=0.490377	consensus_score=497.5	fisher_strand_p_value=0.181001	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=79/57	major_frequency=9.855e-01	minor_base=G	minor_cov=0/2	new_cov=79/57	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=79/60
RA	664	.	NC_000913	3907444	0	G	A	consensus_score=414.9	frequency=1	major_base=A	major_cov=60/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/57
RA	665	.	NC_000913	3911533	0	C	A	bias_e_value=1.19928e-11	bias_p_value=2.58374e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.1	fisher_strand_p_value=5.70225e-20	frequency=3.636e-01	ks_quality_p_value=1	major_base=C	major_cov=36/69	major_frequency=6.364e-01	minor_base=A	minor_cov=60/0	new_cov=60/0	polymorphism_frequency=3.636e-01	polymorphism_score=39.5	prediction=polymorphism	ref_cov=36/69	total_cov=96/69
RA	666	.	NC_000913	3943634	0	A	G	bias_e_value=4304920	bias_p_value=0.927454	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.9	fisher_strand_p_value=0.644132	frequency=3.568e-01	ks_quality_p_value=1	major_base=A	major_cov=68/51	major_frequency=6.432e-01	minor_base=G	minor_cov=35/31	new_cov=35/31	polymorphism_frequency=3.568e-01	polymorphism_score=188.2	prediction=polymorphism	ref_cov=68/51	total_cov=103/83
RA	667	.	NC_000913	3953043	0	A	G	bias_e_value=3773360	bias_p_value=0.812935	consensus_score=365.1	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/54	major_frequency=9.899e-01	minor_base=A	minor_cov=1/0	new_cov=44/54	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/54
RA	668	.	NC_000913	3993531	0	T	C	consensus_score=397.7	frequency=1	major_base=C	major_cov=57/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/49
RA	669	.	NC_000913	4057150	0	C	T	consensus_score=467.7	frequency=1	major_base=T	major_cov=69/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/60
RA	670	.	NC_000913	4058473	0	G	A	consensus_score=389.3	frequency=1	major_base=A	major_cov=65/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/51
RA	671	.	NC_000913	4058823	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=449.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/72	major_frequency=9.921e-01	minor_base=G	minor_cov=0/1	new_cov=54/72	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/73
RA	672	.	NC_000913	4085516	0	G	A	consensus_score=406.5	frequency=1	major_base=A	major_cov=64/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/53
RA	673	.	NC_000913	4110415	0	C	T	consensus_score=529.5	frequency=1	major_base=T	major_cov=85/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/68
RA	674	.	NC_000913	4116753	0	C	T	consensus_score=470.5	frequency=1	major_base=T	major_cov=65/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/65
RA	675	.	NC_000913	4117060	0	C	T	consensus_score=575.7	frequency=1	major_base=T	major_cov=88/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=88/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=88/67
RA	676	.	NC_000913	4117270	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=529.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=79/75	major_frequency=9.935e-01	minor_base=C	minor_cov=1/0	new_cov=79/75	polymorphism_frequency=9.935e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/75
RA	677	.	NC_000913	4119767	0	C	T	consensus_score=459.5	frequency=1	major_base=T	major_cov=67/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/66
RA	678	.	NC_000913	4171438	0	T	.	bias_e_value=3306010	bias_p_value=0.712249	consensus_score=36.4	deleted=1	fisher_strand_p_value=0.346154	frequency=1	ks_quality_p_value=0.996928	major_base=.	major_cov=8/17	major_frequency=9.615e-01	minor_base=T	minor_cov=1/0	new_cov=8/17	polymorphism_frequency=9.615e-01	polymorphism_score=0.7	prediction=consensus	ref_cov=1/0	total_cov=9/18
RA	679	.	NC_000913	4171439	0	A	.	bias_e_value=4641570	bias_p_value=0.999983	consensus_score=35.4	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994092	major_base=.	major_cov=8/17	major_frequency=9.259e-01	minor_base=A	minor_cov=1/1	new_cov=8/17	polymorphism_frequency=9.259e-01	polymorphism_score=3.9	prediction=consensus	ref_cov=1/1	total_cov=9/18
RA	680	.	NC_000913	4179329	0	G	A	bias_e_value=3551940	bias_p_value=0.765232	consensus_score=483.4	fisher_strand_p_value=0.398601	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=86/56	major_frequency=9.930e-01	minor_base=G	minor_cov=0/1	new_cov=86/56	polymorphism_frequency=9.930e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=86/57
RA	681	.	NC_000913	4208132	0	G	A	bias_e_value=2458060	bias_p_value=0.529566	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.0	fisher_strand_p_value=0.219343	frequency=7.427e-01	ks_quality_p_value=0.933728	major_base=A	major_cov=61/66	major_frequency=7.427e-01	minor_base=G	minor_cov=16/28	new_cov=61/66	polymorphism_frequency=7.427e-01	polymorphism_score=114.1	prediction=polymorphism	ref_cov=16/28	total_cov=78/94
RA	682	.	NC_000913	4209791	0	G	A	bias_e_value=3422060	bias_p_value=0.73725	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.3	fisher_strand_p_value=0.373449	frequency=4.400e-01	ks_quality_p_value=0.989086	major_base=G	major_cov=69/43	major_frequency=5.600e-01	minor_base=A	minor_cov=60/28	new_cov=60/28	polymorphism_frequency=4.400e-01	polymorphism_score=253.5	prediction=polymorphism	ref_cov=69/43	total_cov=129/72
RA	683	.	NC_000913	4223638	0	T	C	bias_e_value=2572770	bias_p_value=0.554279	consensus_score=451.5	fisher_strand_p_value=0.220774	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=57/66	major_frequency=9.840e-01	minor_base=A	minor_cov=2/0	new_cov=57/66	polymorphism_frequency=9.840e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/66
RA	684	.	NC_000913	4242914	0	C	T	consensus_score=404.3	frequency=1	major_base=T	major_cov=56/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/56
RA	685	.	NC_000913	4259611	0	G	A	bias_e_value=3410920	bias_p_value=0.734851	consensus_score=360.0	fisher_strand_p_value=0.366972	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=69/39	major_frequency=9.908e-01	minor_base=C	minor_cov=0/1	new_cov=69/39	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/40
RA	686	.	NC_000913	4270596	0	G	A	consensus_score=413.0	frequency=1	major_base=A	major_cov=67/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/52
RA	687	.	NC_000913	4278574	0	G	A	consensus_score=478.0	frequency=1	major_base=A	major_cov=41/93	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/93	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/93
RA	688	.	NC_000913	4296268	0	T	C	bias_e_value=3956560	bias_p_value=0.852402	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.5	fisher_strand_p_value=0.515809	frequency=2.778e-01	ks_quality_p_value=0.985856	major_base=T	major_cov=28/11	major_frequency=7.222e-01	minor_base=C	minor_cov=9/6	new_cov=9/6	polymorphism_frequency=2.778e-01	polymorphism_score=36.9	prediction=polymorphism	ref_cov=28/11	total_cov=37/17
RA	689	.	NC_000913	4296380	1	.	C	bias_e_value=4337170	bias_p_value=0.934403	consensus_score=309.3	fisher_strand_p_value=0.660392	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=63/30	major_frequency=9.490e-01	minor_base=T	minor_cov=3/2	new_cov=63/30	polymorphism_frequency=9.490e-01	polymorphism_score=2.7	prediction=consensus	ref_cov=1/0	total_cov=67/33
RA	690	.	NC_000913	4296380	2	.	G	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=333.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996773	major_base=G	major_cov=66/33	major_frequency=9.900e-01	minor_base=.	minor_cov=1/0	new_cov=66/33	polymorphism_frequency=9.900e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=67/33
RA	691	.	NC_000913	4327494	0	G	A	bias_e_value=1947840	bias_p_value=0.419645	consensus_score=497.8	fisher_strand_p_value=0.142241	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=90/53	major_frequency=9.862e-01	minor_base=G	minor_cov=0/2	new_cov=90/53	polymorphism_frequency=9.862e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=90/55
RA	692	.	NC_000913	4359314	0	G	A	bias_e_value=1506170	bias_p_value=0.324489	consensus_score=516.4	fisher_strand_p_value=0.0975081	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/98	major_frequency=9.860e-01	minor_base=C	minor_cov=2/0	new_cov=43/98	polymorphism_frequency=9.860e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/98
RA	693	.	NC_000913	4360965	0	C	A	bias_e_value=1.13211e-07	bias_p_value=2.43902e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=358.3	fisher_strand_p_value=6.789e-16	frequency=2.400e-01	ks_quality_p_value=1	major_base=C	major_cov=46/87	major_frequency=7.600e-01	minor_base=A	minor_cov=42/0	new_cov=42/0	polymorphism_frequency=2.400e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=46/87	total_cov=88/87
RA	694	.	NC_000913	4392997	0	G	A	bias_e_value=3553250	bias_p_value=0.765513	consensus_score=674.4	fisher_strand_p_value=0.398907	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=72/110	major_frequency=9.945e-01	minor_base=C	minor_cov=1/0	new_cov=72/110	polymorphism_frequency=9.945e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/110
RA	695	.	NC_000913	4393552	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=361.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999308	major_base=A	major_cov=59/48	major_frequency=9.907e-01	minor_base=C	minor_cov=1/0	new_cov=59/48	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/48
RA	696	.	NC_000913	4396373	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=326.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/42	major_frequency=9.891e-01	minor_base=G	minor_cov=1/0	new_cov=49/42	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	697	.	NC_000913	4396772	0	T	C	consensus_score=316.2	frequency=1	major_base=C	major_cov=46/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/40
RA	698	.	NC_000913	4400119	0	G	A	consensus_score=573.4	frequency=1	major_base=A	major_cov=72/89	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/89	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/89
RA	699	.	NC_000913	4413535	0	G	A	consensus_score=439.7	frequency=1	major_base=A	major_cov=66/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/65
RA	700	.	NC_000913	4416177	0	C	T	consensus_score=514.1	frequency=1	major_base=T	major_cov=84/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=84/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=84/62
RA	701	.	NC_000913	4420399	0	G	A	consensus_score=496.8	frequency=1	major_base=A	major_cov=66/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/76
RA	702	.	NC_000913	4425688	0	C	A	bias_e_value=3918030	bias_p_value=0.844103	consensus_score=487.4	fisher_strand_p_value=0.496454	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=71/69	major_frequency=9.929e-01	minor_base=G	minor_cov=0/1	new_cov=71/69	polymorphism_frequency=9.929e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/70
RA	703	.	NC_000913	4425696	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=468.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=68/68	major_frequency=9.927e-01	minor_base=G	minor_cov=0/1	new_cov=68/68	polymorphism_frequency=9.927e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/69
RA	704	.	NC_000913	4427822	0	C	A	bias_e_value=2.84341e-07	bias_p_value=6.12585e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.0	fisher_strand_p_value=1.75132e-15	frequency=2.840e-01	ks_quality_p_value=1	major_base=C	major_cov=44/72	major_frequency=7.160e-01	minor_base=A	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=2.840e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=44/72	total_cov=90/72
RA	705	.	NC_000913	4436956	0	C	T	bias_e_value=3624970	bias_p_value=0.780966	consensus_score=472.1	fisher_strand_p_value=0.425373	frequency=1	ks_quality_p_value=0.978245	major_base=T	major_cov=56/77	major_frequency=9.925e-01	minor_base=C	minor_cov=1/0	new_cov=56/77	polymorphism_frequency=9.925e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=57/77
RA	706	.	NC_000913	4436957	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=474.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=59/75	major_frequency=9.926e-01	minor_base=C	minor_cov=0/1	new_cov=59/75	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=59/76
RA	707	.	NC_000913	4472406	0	C	T	consensus_score=492.7	frequency=1	major_base=T	major_cov=81/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/60
RA	708	.	NC_000913	4486636	0	G	A	consensus_score=339.6	frequency=1	major_base=A	major_cov=66/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/37
RA	709	.	NC_000913	4501834	0	C	T	consensus_score=614.4	frequency=1	major_base=T	major_cov=107/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=107/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=107/65
RA	710	.	NC_000913	4510238	0	T	G	bias_e_value=14870.9	bias_p_value=0.00320379	consensus_score=520.1	fisher_strand_p_value=0.000358639	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=94/51	major_frequency=9.477e-01	minor_base=T	minor_cov=0/8	new_cov=94/51	polymorphism_frequency=9.477e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/8	total_cov=94/59
RA	711	.	NC_000913	4532409	0	T	G	bias_e_value=3820180	bias_p_value=0.823021	consensus_score=393.5	fisher_strand_p_value=0.46789	frequency=1	ks_quality_p_value=0.999321	major_base=G	major_cov=50/58	major_frequency=9.908e-01	minor_base=A	minor_cov=1/0	new_cov=50/58	polymorphism_frequency=9.908e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	712	.	NC_000913	4546601	0	C	T	consensus_score=588.6	frequency=1	major_base=T	major_cov=81/92	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/92	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/92
RA	713	.	NC_000913	4578548	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=606.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=93/74	major_frequency=9.940e-01	minor_base=C	minor_cov=1/0	new_cov=93/74	polymorphism_frequency=9.940e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=94/74
RA	714	.	NC_000913	4598702	0	C	A	bias_e_value=3.02972e-05	bias_p_value=6.52724e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.7	fisher_strand_p_value=2.16409e-13	frequency=2.715e-01	ks_quality_p_value=1	major_base=C	major_cov=44/66	major_frequency=7.285e-01	minor_base=A	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=2.715e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=44/66	total_cov=85/66
RA	715	.	NC_000913	4604109	0	G	T	bias_e_value=3865600	bias_p_value=0.832808	consensus_score=478.1	fisher_strand_p_value=0.485075	frequency=1	ks_quality_p_value=0.990951	major_base=T	major_cov=64/69	major_frequency=9.925e-01	minor_base=.	minor_cov=1/0	new_cov=64/69	polymorphism_frequency=9.925e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=65/69
RA	716	.	NC_000913	4612119	0	G	T	bias_e_value=3.52176e-07	bias_p_value=7.5873e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.4	fisher_strand_p_value=2.18288e-15	frequency=2.537e-01	ks_quality_p_value=1	major_base=G	major_cov=73/27	major_frequency=7.463e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.537e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=73/27	total_cov=73/61
RA	717	.	NC_000913	4615345	0	C	T	consensus_score=309.9	frequency=1	major_base=T	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	718	.	NC_000913	4631788	0	G	A	consensus_score=348.3	frequency=1	major_base=A	major_cov=59/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/47
RA	719	.	NC_000913	4636925	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=436.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=53/65	major_frequency=9.916e-01	minor_base=G	minor_cov=0/1	new_cov=53/65	polymorphism_frequency=9.916e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=0/1	total_cov=53/66
RA	720	.	NC_000913	4638240	0	G	A	bias_e_value=3937530	bias_p_value=0.848305	consensus_score=403.4	fisher_strand_p_value=0.502506	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=66/54	major_frequency=9.836e-01	minor_base=C	minor_cov=2/0	new_cov=66/54	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/54
MC	721	.	NC_000913	168355	168703	0	0	left_inside_cov=0	left_outside_cov=102	right_inside_cov=0	right_outside_cov=124
MC	722	.	NC_000913	182569	182988	0	0	left_inside_cov=1	left_outside_cov=103	right_inside_cov=3	right_outside_cov=127
MC	723	.	NC_000913	257908	258683	768	0	left_inside_cov=0	left_outside_cov=158	right_inside_cov=2	right_outside_cov=160
MC	724	.	NC_000913	402391	403113	0	0	left_inside_cov=0	left_outside_cov=109	right_inside_cov=1	right_outside_cov=110
MC	725	.	NC_000913	1196277	1211460	0	0	left_inside_cov=32	left_outside_cov=36	right_inside_cov=33	right_outside_cov=42
MC	726	.	NC_000913	1632754	1633399	93	443	left_inside_cov=33	left_outside_cov=34	right_inside_cov=29	right_outside_cov=34
MC	727	.	NC_000913	1757529	1757591	0	0	left_inside_cov=0	left_outside_cov=122	right_inside_cov=0	right_outside_cov=124
MC	728	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=130	right_inside_cov=0	right_outside_cov=136
MC	729	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=1	right_outside_cov=87
MC	730	.	NC_000913	3258933	3258937	0	0	left_inside_cov=0	left_outside_cov=90	right_inside_cov=1	right_outside_cov=91
MC	731	.	NC_000913	3349206	3366529	0	975	left_inside_cov=0	left_outside_cov=136	right_inside_cov=33	right_outside_cov=40
MC	732	.	NC_000913	3423902	3424457	332	219	left_inside_cov=33	left_outside_cov=34	right_inside_cov=33	right_outside_cov=36
MC	733	.	NC_000913	3762431	3765125	1643	1049	left_inside_cov=33	left_outside_cov=35	right_inside_cov=33	right_outside_cov=35
MC	734	.	NC_000913	4166501	4171439	1718	2899	left_inside_cov=33	left_outside_cov=35	right_inside_cov=27	right_outside_cov=40
JC	735	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=98	coverage_plus=76	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=293	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=149	max_min_right_minus=149	max_min_right_plus=134	max_pos_hash_score=588	max_right=299	max_right_minus=297	max_right_plus=299	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.54	new_junction_read_count=175	polymorphism_frequency=1.000e+00	pos_hash_score=85	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=174
JC	736	.	NC_000913	126288	-1	NC_000913	126829	1	0	alignment_overlap=18	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.242e-02	junction_possible_overlap_registers=276	key=NC_000913__126288__-1__NC_000913__126811__1__18____300__300__0__0	max_left=58	max_left_minus=58	max_left_plus=58	max_min_left=58	max_min_left_minus=58	max_min_left_plus=58	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=552	max_right=84	max_right_minus=84	max_right_plus=84	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.242e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=18	side_1_possible_overlap_registers=294	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=3
JC	737	.	NC_000913	168354	-1	NC_000913	182568	-1	0	alignment_overlap=11	coverage_minus=46	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=283	key=NC_000913__168354__-1__NC_000913__182579__-1__11____300__300__0__0	max_left=262	max_left_minus=253	max_left_plus=262	max_min_left=142	max_min_left_minus=142	max_min_left_plus=137	max_min_right=141	max_min_right_minus=134	max_min_right_plus=141	max_pos_hash_score=566	max_right=288	max_right_minus=284	max_right_plus=288	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=101
JC	738	.	NC_000913	168704	1	NC_000913	182989	1	0	alignment_overlap=8	coverage_minus=50	coverage_plus=70	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__168704__1__NC_000913__182981__1__8____300__300__0__0	max_left=290	max_left_minus=289	max_left_plus=290	max_min_left=142	max_min_left_minus=142	max_min_left_plus=134	max_min_right=135	max_min_right_minus=106	max_min_right_plus=135	max_pos_hash_score=572	max_right=286	max_right_minus=286	max_right_plus=281	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.12	new_junction_read_count=124	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=120
JC	739	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=66	coverage_plus=90	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=291	max_left_minus=291	max_left_plus=287	max_min_left=137	max_min_left_minus=97	max_min_left_plus=137	max_min_right=145	max_min_right_minus=143	max_min_right_plus=145	max_pos_hash_score=572	max_right=289	max_right_minus=289	max_right_plus=279	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.43	new_junction_read_count=158	polymorphism_frequency=1.000e+00	pos_hash_score=94	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=156
JC	740	.	NC_000913	402390	-1	NC_000913	403114	1	0	alignment_overlap=5	coverage_minus=46	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__402390__-1__NC_000913__403109__1__5____300__300__0__0	max_left=293	max_left_minus=290	max_left_plus=293	max_min_left=144	max_min_left_minus=139	max_min_left_plus=144	max_min_right=146	max_min_right_minus=114	max_min_right_plus=146	max_pos_hash_score=578	max_right=279	max_right_minus=265	max_right_plus=279	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.97	new_junction_read_count=109	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104
JC	741	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=24	coverage_plus=19	flanking_left=300	flanking_right=300	frequency=3.446e-01	junction_possible_overlap_registers=292	key=NC_000913__566774__-1__NC_000913__568034__1__2____300__300__0__0	max_left=236	max_left_minus=225	max_left_plus=236	max_min_left=147	max_min_left_minus=146	max_min_left_plus=147	max_min_right=135	max_min_right_minus=135	max_min_right_plus=127	max_pos_hash_score=584	max_right=185	max_right_minus=185	max_right_plus=172	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.63	new_junction_read_count=71	polymorphism_frequency=3.446e-01	pos_hash_score=24	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=133	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=138	side_2_redundant=0	total_non_overlap_reads=43
JC	742	.	NC_000913	621814	-1	NC_000913	621962	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.505e-02	junction_possible_overlap_registers=285	key=NC_000913__621814__-1__NC_000913__621953__1__9____300__300__0__0	max_left=208	max_left_minus=208	max_left_plus=208	max_min_left=87	max_min_left_minus=87	max_min_left_plus=87	max_min_right=11	max_min_right_minus=11	max_min_right_plus=11	max_pos_hash_score=570	max_right=90	max_right_minus=90	max_right_plus=90	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.505e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
JC	743	.	NC_000913	696455	-1	NC_000913	696892	1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.119e-02	junction_possible_overlap_registers=293	key=NC_000913__696455__-1__NC_000913__696892__1__-1__T__300__300__0__0	max_left=91	max_left_minus=91	max_left_plus=91	max_min_left=80	max_min_left_minus=80	max_min_left_plus=80	max_min_right=72	max_min_right_minus=72	max_min_right_plus=72	max_pos_hash_score=586	max_right=275	max_right_minus=275	max_right_plus=181	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.07	new_junction_read_count=8	polymorphism_frequency=9.119e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=T
JC	744	.	NC_000913	696505	-1	NC_000913	696832	1	0	alignment_overlap=30	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.333e-02	junction_possible_overlap_registers=264	key=NC_000913__696505__-1__NC_000913__696802__1__30____300__300__0__0	max_left=192	max_left_minus=192	max_left_plus=107	max_min_left=107	max_min_left_minus=0	max_min_left_plus=107	max_min_right=78	max_min_right_minus=78	max_min_right_plus=0	max_pos_hash_score=528	max_right=163	max_right_minus=78	max_right_plus=163	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.333e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=30	side_1_possible_overlap_registers=294	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=264	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=4
JC	745	.	NC_000913	696566	-1	NC_000913	696890	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.035e-02	junction_possible_overlap_registers=283	key=NC_000913__696566__-1__NC_000913__696879__1__11____300__300__0__0	max_left=108	max_left_minus=108	max_left_plus=108	max_min_left=56	max_min_left_minus=56	max_min_left_plus=56	max_min_right=105	max_min_right_minus=105	max_min_right_plus=105	max_pos_hash_score=566	max_right=227	max_right_minus=227	max_right_plus=227	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.035e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=4
JC	746	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=6	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.165e-01	junction_possible_overlap_registers=216	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=164	max_left_minus=164	max_left_plus=79	max_min_left=79	max_min_left_minus=76	max_min_left_plus=79	max_min_right=106	max_min_right_minus=106	max_min_right_plus=0	max_pos_hash_score=432	max_right=136	max_right_minus=121	max_right_plus=136	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=1.165e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=8
JC	747	.	NC_000913	780689	-1	NC_000913	781283	1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.656e-02	junction_possible_overlap_registers=282	key=NC_000913__780689__-1__NC_000913__781271__1__12____300__300__0__0	max_left=229	max_left_minus=229	max_left_plus=120	max_min_left=73	max_min_left_minus=73	max_min_left_plus=73	max_min_right=32	max_min_right_minus=32	max_min_right_plus=32	max_pos_hash_score=564	max_right=126	max_right_minus=126	max_right_plus=126	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=6.656e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=5
JC	748	.	NC_000913	780733	-1	NC_000913	780740	1	-21	alignment_overlap=-21	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.419e-02	junction_possible_overlap_registers=273	key=NC_000913__780733__-1__NC_000913__780740__1__-21__TGACGGTGGGTTCGGTGGAAG__300__300__0__0	max_left=249	max_left_minus=249	max_left_plus=212	max_min_left=103	max_min_left_minus=103	max_min_left_plus=0	max_min_right=65	max_min_right_minus=24	max_min_right_plus=65	max_pos_hash_score=546	max_right=175	max_right_minus=175	max_right_plus=65	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=6.419e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=TGACGGTGGGTTCGGTGGAAG
JC	749	.	NC_000913	780918	-1	NC_000913	781445	1	0	alignment_overlap=76	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.760e-02	junction_possible_overlap_registers=218	key=NC_000913__780918__-1__NC_000913__781369__1__76____300__300__0__0	max_left=60	max_left_minus=60	max_left_plus=60	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=53	max_min_right_minus=53	max_min_right_plus=53	max_pos_hash_score=436	max_right=53	max_right_minus=53	max_right_plus=53	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=7.760e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=4
JC	750	.	NC_000913	781016	-1	NC_000913	2521253	1	-33	alignment_overlap=-33	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.101e-02	junction_possible_overlap_registers=261	key=NC_000913__781016__-1__NC_000913__2521253__1__-33__TCCTGAATGATTAAGGCAGCATAATCCCGCAAG__300__300__0__0	max_left=80	max_left_minus=80	max_left_plus=80	max_min_left=80	max_min_left_minus=80	max_min_left_plus=80	max_min_right=62	max_min_right_minus=62	max_min_right_plus=62	max_pos_hash_score=522	max_right=128	max_right_minus=128	max_right_plus=128	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=9.101e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=TCCTGAATGATTAAGGCAGCATAATCCCGCAAG
JC	751	.	NC_000913	781222	-1	NC_000913	781445	1	0	alignment_overlap=76	coverage_minus=4	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.716e-01	junction_possible_overlap_registers=218	key=NC_000913__781222__-1__NC_000913__781369__1__76____300__300__0__0	max_left=195	max_left_minus=195	max_left_plus=134	max_min_left=98	max_min_left_minus=56	max_min_left_plus=98	max_min_right=95	max_min_right_minus=78	max_min_right_plus=95	max_pos_hash_score=436	max_right=143	max_right_minus=143	max_right_plus=143	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.12	new_junction_read_count=10	polymorphism_frequency=1.716e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=9
JC	752	.	NC_000913	781273	-1	NC_000913	781762	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.541e-02	junction_possible_overlap_registers=292	key=NC_000913__781273__-1__NC_000913__781760__1__2____300__300__0__0	max_left=89	max_left_minus=73	max_left_plus=89	max_min_left=73	max_min_left_minus=73	max_min_left_plus=0	max_min_right=56	max_min_right_minus=0	max_min_right_plus=56	max_pos_hash_score=584	max_right=238	max_right_minus=238	max_right_plus=56	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.541e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=3
JC	753	.	NC_000913	781369	1	NC_000913	2521006	-1	-2	alignment_overlap=-2	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.601e-02	junction_possible_overlap_registers=292	key=NC_000913__781369__1__NC_000913__2521006__-1__-2__GG__300__300__0__0	max_left=129	max_left_minus=129	max_left_plus=129	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=58	max_min_right_minus=58	max_min_right_plus=58	max_pos_hash_score=584	max_right=58	max_right_minus=58	max_right_plus=58	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.601e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GG
JC	754	.	NC_000913	781369	1	NC_000913	2521127	-1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.733e-02	junction_possible_overlap_registers=293	key=NC_000913__781369__1__NC_000913__2521127__-1__-1__G__300__300__0__0	max_left=129	max_left_minus=129	max_left_plus=129	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=59	max_pos_hash_score=586	max_right=59	max_right_minus=59	max_right_plus=59	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.733e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=G
JC	755	.	NC_000913	1226177	-1	NC_000913	1226369	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.060e-02	junction_possible_overlap_registers=281	key=NC_000913__1226177__-1__NC_000913__1226356__1__13____300__300__0__0	max_left=157	max_left_minus=157	max_left_plus=157	max_min_left=29	max_min_left_minus=29	max_min_left_plus=29	max_min_right=109	max_min_right_minus=109	max_min_right_plus=109	max_pos_hash_score=562	max_right=109	max_right_minus=109	max_right_plus=109	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.060e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=13	side_1_possible_overlap_registers=294	side_1_read_count=126	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=4
JC	756	.	NC_000913	1286728	-1	NC_000913	1287263	1	0	alignment_overlap=21	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.547e-02	junction_possible_overlap_registers=273	key=NC_000913__1286728__-1__NC_000913__1287242__1__21____300__300__0__0	max_left=84	max_left_minus=84	max_left_plus=84	max_min_left=54	max_min_left_minus=54	max_min_left_plus=54	max_min_right=24	max_min_right_minus=24	max_min_right_plus=24	max_pos_hash_score=546	max_right=60	max_right_minus=60	max_right_plus=60	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.547e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=21	side_1_possible_overlap_registers=294	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=4
JC	757	.	NC_000913	1286728	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.819e-02	junction_possible_overlap_registers=274	key=NC_000913__1286728__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=85	max_left_minus=85	max_left_plus=85	max_min_left=55	max_min_left_minus=55	max_min_left_plus=55	max_min_right=24	max_min_right_minus=24	max_min_right_plus=24	max_pos_hash_score=548	max_right=60	max_right_minus=60	max_right_plus=60	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.819e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.51	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=4
JC	758	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.676e-02	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=270	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=11	max_min_right_minus=11	max_min_right_plus=6	max_pos_hash_score=548	max_right=276	max_right_minus=11	max_right_plus=276	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=8.676e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.51	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=5
JC	759	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.676e-02	junction_possible_overlap_registers=274	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=231	max_left_minus=181	max_left_plus=231	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=126	max_min_right_minus=126	max_min_right_plus=49	max_pos_hash_score=548	max_right=276	max_right_minus=126	max_right_plus=276	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=8.676e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.51	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=4
JC	760	.	NC_000913	1287241	-1	NC_000913	1287572	1	-36	alignment_overlap=-36	coverage_minus=7	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.941e-01	junction_possible_overlap_registers=258	key=NC_000913__1287241__-1__NC_000913__1287572__1__-36__NATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTG__300__300__0__0	max_left=184	max_left_minus=162	max_left_plus=184	max_min_left=92	max_min_left_minus=92	max_min_left_plus=86	max_min_right=129	max_min_right_minus=129	max_min_right_plus=90	max_pos_hash_score=516	max_right=186	max_right_minus=172	max_right_plus=186	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.13	new_junction_read_count=13	polymorphism_frequency=1.941e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.54	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=13	unique_read_sequence=NATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTG
JC	761	.	NC_000913	1287262	-1	NC_000913	1287382	1	0	alignment_overlap=21	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.723e-02	junction_possible_overlap_registers=273	key=NC_000913__1287262__-1__NC_000913__1287361__1__21____300__300__0__0	max_left=85	max_left_minus=85	max_left_plus=85	max_min_left=85	max_min_left_minus=85	max_min_left_plus=85	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=546	max_right=169	max_right_minus=169	max_right_plus=169	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=6.723e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.62	side_1_overlap=21	side_1_possible_overlap_registers=294	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.44	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=4
JC	762	.	NC_000913	1293268	1	NC_000913	2290113	-1	0	alignment_overlap=1	coverage_minus=43	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1293267__1__NC_000913__2290113__-1__1____300__300__0__1	max_left=297	max_left_minus=280	max_left_plus=297	max_min_left=148	max_min_left_minus=145	max_min_left_plus=148	max_min_right=148	max_min_right_minus=148	max_min_right_plus=145	max_pos_hash_score=586	max_right=291	max_right_minus=282	max_right_plus=291	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.79	new_junction_read_count=89	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=89
JC	763	.	NC_000913	1293271	-1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=68	coverage_plus=54	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1293271__-1__NC_000913__2101749__1__0____300__300__0__1	max_left=296	max_left_minus=292	max_left_plus=296	max_min_left=146	max_min_left_minus=146	max_min_left_plus=135	max_min_right=146	max_min_right_minus=142	max_min_right_plus=146	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=273	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.09	new_junction_read_count=124	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=122
JC	764	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=72	coverage_plus=66	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=288	max_left_plus=294	max_min_left=131	max_min_left_minus=127	max_min_left_plus=131	max_min_right=142	max_min_right_minus=133	max_min_right_plus=142	max_pos_hash_score=580	max_right=287	max_right_minus=285	max_right_plus=287	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.25	new_junction_read_count=140	polymorphism_frequency=1.000e+00	pos_hash_score=83	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=138
JC	765	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=67	coverage_plus=61	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=294	max_min_left=142	max_min_left_minus=139	max_min_left_plus=142	max_min_right=148	max_min_right_minus=148	max_min_right_plus=132	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=129	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=128
JC	766	.	NC_000913	1411899	1	NC_000913	1434958	-1	0	alignment_overlap=26	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.705e-02	junction_possible_overlap_registers=268	key=NC_000913__1411899__1__NC_000913__1434984__-1__26____300__300__0__0	max_left=172	max_left_minus=172	max_left_plus=29	max_min_left=78	max_min_left_minus=78	max_min_left_plus=29	max_min_right=102	max_min_right_minus=102	max_min_right_plus=0	max_pos_hash_score=536	max_right=245	max_right_minus=196	max_right_plus=245	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.705e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=26	side_1_possible_overlap_registers=294	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=121	side_2_redundant=0	total_non_overlap_reads=3
JC	767	.	NC_000913	1431062	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1431062__1__NC_000913__1469240__-1__0____300__300__0__1	max_left=299	max_left_minus=279	max_left_plus=299	max_min_left=148	max_min_left_minus=148	max_min_left_plus=147	max_min_right=141	max_min_right_minus=141	max_min_right_plus=140	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=296	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.86	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=96
JC	768	.	NC_000913	1431066	-1	NC_000913	1651548	-1	0	alignment_overlap=0	coverage_minus=47	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1431066__-1__NC_000913__1651548__-1__0____300__300__0__1	max_left=292	max_left_minus=292	max_left_plus=279	max_min_left=147	max_min_left_minus=147	max_min_left_plus=117	max_min_right=147	max_min_right_minus=139	max_min_right_plus=147	max_pos_hash_score=588	max_right=279	max_right_minus=271	max_right_plus=279	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.80	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=89
JC	769	.	NC_000913	1469296	1	NC_000913	4117985	-1	0	alignment_overlap=0	coverage_minus=105	coverage_plus=66	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1469296__1__NC_000913__4117985__-1__0____300__300__1__0	max_left=296	max_left_minus=291	max_left_plus=296	max_min_left=140	max_min_left_minus=134	max_min_left_plus=140	max_min_right=142	max_min_right_minus=141	max_min_right_plus=142	max_pos_hash_score=588	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.55	new_junction_read_count=176	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	read_count_offset=2	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=171
JC	770	.	NC_000913	1757528	-1	NC_000913	1757592	1	0	alignment_overlap=2	coverage_minus=50	coverage_plus=70	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1757528__-1__NC_000913__1757590__1__2____300__300__0__0	max_left=293	max_left_minus=293	max_left_plus=289	max_min_left=148	max_min_left_minus=146	max_min_left_plus=148	max_min_right=144	max_min_right_minus=128	max_min_right_plus=144	max_pos_hash_score=584	max_right=293	max_right_minus=289	max_right_plus=293	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.08	new_junction_read_count=122	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=120
JC	771	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=54	coverage_plus=77	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=299	max_left_minus=294	max_left_plus=299	max_min_left=145	max_min_left_minus=143	max_min_left_plus=145	max_min_right=145	max_min_right_minus=145	max_min_right_plus=139	max_pos_hash_score=588	max_right=298	max_right_minus=291	max_right_plus=298	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.20	new_junction_read_count=136	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=131
JC	772	.	NC_000913	2092986	1	NC_000913	2092981	-1	0	alignment_overlap=14	coverage_minus=35	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=280	key=NC_000913__2092986__1__NC_000913__2092995__-1__14____300__300__0__0	max_left=269	max_left_minus=269	max_left_plus=250	max_min_left=138	max_min_left_minus=138	max_min_left_plus=107	max_min_right=137	max_min_right_minus=135	max_min_right_plus=137	max_pos_hash_score=560	max_right=278	max_right_minus=261	max_right_plus=278	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.66	new_junction_read_count=71	polymorphism_frequency=9.613e-01	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=14	side_1_possible_overlap_registers=294	side_1_read_count=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=280	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71
JC	773	.	NC_000913	2237684	1	NC_000913	2288919	1	0	alignment_overlap=0	coverage_minus=60	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2237684__1__NC_000913__2288919__1__0____300__300__0__1	max_left=298	max_left_minus=266	max_left_plus=298	max_min_left=138	max_min_left_minus=138	max_min_left_plus=137	max_min_right=146	max_min_right_minus=137	max_min_right_plus=146	max_pos_hash_score=588	max_right=293	max_right_minus=293	max_right_plus=283	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.93	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=103
JC	774	.	NC_000913	2237687	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=56	coverage_plus=65	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2237687__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=289	max_left_minus=289	max_left_plus=284	max_min_left=149	max_min_left_minus=137	max_min_left_plus=149	max_min_right=147	max_min_right_minus=147	max_min_right_plus=114	max_pos_hash_score=588	max_right=292	max_right_minus=230	max_right_plus=292	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=121	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=121
JC	775	.	NC_000913	2288919	1	NC_000913	3349205	-1	0	alignment_overlap=1	coverage_minus=64	coverage_plus=69	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2288919__1__NC_000913__3349206__-1__1____300__300__1__0	max_left=293	max_left_minus=285	max_left_plus=293	max_min_left=148	max_min_left_minus=143	max_min_left_plus=148	max_min_right=146	max_min_right_minus=137	max_min_right_plus=146	max_pos_hash_score=586	max_right=298	max_right_minus=298	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=136	polymorphism_frequency=1.000e+00	pos_hash_score=77	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=133
JC	776	.	NC_000913	2357652	-1	NC_000913	2357836	1	0	alignment_overlap=34	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=7.735e-02	junction_possible_overlap_registers=260	key=NC_000913__2357652__-1__NC_000913__2357802__1__34____300__300__0__0	max_left=231	max_left_minus=231	max_left_plus=163	max_min_left=127	max_min_left_minus=119	max_min_left_plus=127	max_min_right=102	max_min_right_minus=70	max_min_right_plus=102	max_pos_hash_score=520	max_right=226	max_right_minus=226	max_right_plus=184	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=7.735e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.24	side_1_overlap=34	side_1_possible_overlap_registers=294	side_1_read_count=141	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=260	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=9
JC	777	.	NC_000913	2357730	-1	NC_000913	2357926	1	0	alignment_overlap=40	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.749e-02	junction_possible_overlap_registers=254	key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0	max_left=258	max_left_minus=177	max_left_plus=258	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=88	max_min_right_minus=83	max_min_right_plus=88	max_pos_hash_score=508	max_right=88	max_right_minus=83	max_right_plus=88	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.749e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=40	side_1_possible_overlap_registers=294	side_1_read_count=123	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=3
JC	778	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=37	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=288	max_left_minus=255	max_left_plus=288	max_min_left=141	max_min_left_minus=138	max_min_left_plus=141	max_min_right=140	max_min_right_minus=124	max_min_right_plus=140	max_pos_hash_score=572	max_right=287	max_right_minus=282	max_right_plus=287	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.78	new_junction_read_count=86	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85
JC	779	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=4	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=8.288e-02	junction_possible_overlap_registers=269	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=217	max_left_minus=217	max_left_plus=217	max_min_left=110	max_min_left_minus=110	max_min_left_plus=82	max_min_right=33	max_min_right_minus=33	max_min_right_plus=33	max_pos_hash_score=538	max_right=264	max_right_minus=165	max_right_plus=264	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=8.288e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=9
JC	780	.	NC_000913	2653549	-1	NC_000913	2653872	1	0	alignment_overlap=16	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.154e-02	junction_possible_overlap_registers=278	key=NC_000913__2653549__-1__NC_000913__2653856__1__16____300__300__0__0	max_left=199	max_left_minus=199	max_left_plus=199	max_min_left=129	max_min_left_minus=129	max_min_left_plus=100	max_min_right=134	max_min_right_minus=134	max_min_right_plus=72	max_pos_hash_score=556	max_right=245	max_right_minus=155	max_right_plus=245	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=5.154e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=6
JC	781	.	NC_000913	2818275	-1	NC_000913	2818551	1	0	alignment_overlap=79	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.269e-01	junction_possible_overlap_registers=215	key=NC_000913__2818275__-1__NC_000913__2818472__1__79____300__300__0__0	max_left=174	max_left_minus=174	max_left_plus=87	max_min_left=87	max_min_left_minus=87	max_min_left_plus=87	max_min_right=46	max_min_right_minus=46	max_min_right_plus=0	max_pos_hash_score=430	max_right=221	max_right_minus=198	max_right_plus=221	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.11	new_junction_read_count=9	polymorphism_frequency=1.269e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.66	side_1_overlap=79	side_1_possible_overlap_registers=294	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=9
JC	782	.	NC_000913	2835631	-1	NC_000913	2836143	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.295e-02	junction_possible_overlap_registers=282	key=NC_000913__2835631__-1__NC_000913__2836131__1__12____300__300__0__0	max_left=86	max_left_minus=86	max_left_plus=86	max_min_left=61	max_min_left_minus=0	max_min_left_plus=61	max_min_right=53	max_min_right_minus=53	max_min_right_plus=53	max_pos_hash_score=564	max_right=104	max_right_minus=53	max_right_plus=104	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.295e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=4
JC	783	.	NC_000913	2869114	-1	NC_000913	2869190	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.746e-02	junction_possible_overlap_registers=282	key=NC_000913__2869114__-1__NC_000913__2869178__1__12____300__300__0__0	max_left=212	max_left_minus=212	max_left_plus=211	max_min_left=102	max_min_left_minus=102	max_min_left_plus=0	max_min_right=77	max_min_right_minus=76	max_min_right_plus=77	max_pos_hash_score=564	max_right=186	max_right_minus=186	max_right_plus=77	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.746e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=3
JC	784	.	NC_000913	2913392	1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=63	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1	max_left=295	max_left_minus=285	max_left_plus=295	max_min_left=144	max_min_left_minus=144	max_min_left_plus=132	max_min_right=150	max_min_right_minus=150	max_min_right_plus=147	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=269	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.07	new_junction_read_count=122	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=121
JC	785	.	NC_000913	2913396	-1	NC_000913	2996361	1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=65	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1	max_left=295	max_left_minus=295	max_left_plus=295	max_min_left=146	max_min_left_minus=146	max_min_left_plus=121	max_min_right=139	max_min_right_minus=139	max_min_right_plus=139	max_pos_hash_score=588	max_right=287	max_right_minus=287	max_right_plus=276	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.07	new_junction_read_count=122	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=120
JC	786	.	NC_000913	3258932	-1	NC_000913	3258938	1	0	alignment_overlap=5	coverage_minus=45	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__3258932__-1__NC_000913__3258933__1__5____300__300__0__0	max_left=292	max_left_minus=292	max_left_plus=286	max_min_left=141	max_min_left_minus=141	max_min_left_plus=139	max_min_right=145	max_min_right_minus=137	max_min_right_plus=145	max_pos_hash_score=578	max_right=293	max_right_minus=293	max_right_plus=289	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.80	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90
JC	787	.	NC_000913	3270072	1	NC_000913	4137788	1	-25	alignment_overlap=-25	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.881e-02	junction_possible_overlap_registers=269	key=NC_000913__3270072__1__NC_000913__4137788__1__-25__CAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0	max_left=260	max_left_minus=260	max_left_plus=247	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=43	max_min_right_plus=77	max_pos_hash_score=538	max_right=77	max_right_minus=43	max_right_plus=77	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=4.881e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=120	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=CAGATTGTTGAGTGCGCTTTATTCA
JC	788	.	NC_000913	3469049	-1	NC_000913	3469353	1	0	alignment_overlap=8	coverage_minus=5	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=6.528e-02	junction_possible_overlap_registers=286	key=NC_000913__3469049__-1__NC_000913__3469345__1__8____300__300__0__0	max_left=284	max_left_minus=284	max_left_plus=132	max_min_left=132	max_min_left_minus=60	max_min_left_plus=132	max_min_right=136	max_min_right_minus=136	max_min_right_plus=60	max_pos_hash_score=572	max_right=184	max_right_minus=145	max_right_plus=184	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.09	new_junction_read_count=10	polymorphism_frequency=6.528e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=133	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.42	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=157	side_2_redundant=0	total_non_overlap_reads=10
JC	789	.	NC_000913	3583428	1	NC_000913	3731420	1	0	alignment_overlap=0	coverage_minus=86	coverage_plus=65	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3583428__1__NC_000913__3731420__1__0____300__300__1__0	max_left=296	max_left_minus=289	max_left_plus=296	max_min_left=149	max_min_left_minus=148	max_min_left_plus=149	max_min_right=148	max_min_right_minus=148	max_min_right_plus=144	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.37	new_junction_read_count=156	polymorphism_frequency=1.000e+00	pos_hash_score=84	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=151
JC	790	.	NC_000913	3584195	-1	NC_000913	3731428	-1	0	alignment_overlap=0	coverage_minus=90	coverage_plus=79	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3584195__-1__NC_000913__3731428__-1__0____300__300__1__0	max_left=294	max_left_minus=293	max_left_plus=294	max_min_left=149	max_min_left_minus=149	max_min_left_plus=131	max_min_right=143	max_min_right_minus=138	max_min_right_plus=143	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.54	new_junction_read_count=175	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=169
JC	791	.	NC_000913	3822646	1	NC_000913	3822651	-1	0	alignment_overlap=0	coverage_minus=67	coverage_plus=61	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=146	max_min_left_minus=146	max_min_left_plus=137	max_min_right=149	max_min_right_minus=149	max_min_right_plus=147	max_pos_hash_score=588	max_right=299	max_right_minus=299	max_right_plus=288	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.13	new_junction_read_count=128	polymorphism_frequency=9.771e-01	pos_hash_score=72	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=5	side_2_redundant=0	total_non_overlap_reads=128
JC	792	.	NC_000913	3931171	1	NC_000913	4503515	-1	0	alignment_overlap=0	coverage_minus=70	coverage_plus=78	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3931171__1__NC_000913__4503515__-1__0____300__300__0__0	max_left=299	max_left_minus=298	max_left_plus=299	max_min_left=149	max_min_left_minus=149	max_min_left_plus=132	max_min_right=150	max_min_right_minus=150	max_min_right_plus=147	max_pos_hash_score=588	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.33	new_junction_read_count=151	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	read_count_offset=12	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=282	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=148
JC	793	.	NC_000913	3931182	-1	NC_000913	4502090	1	0	alignment_overlap=1	coverage_minus=55	coverage_plus=75	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3931182__-1__NC_000913__4502089__1__1____300__300__0__0	max_left=293	max_left_minus=286	max_left_plus=293	max_min_left=147	max_min_left_minus=145	max_min_left_plus=147	max_min_right=146	max_min_right_minus=145	max_min_right_plus=146	max_pos_hash_score=586	max_right=296	max_right_minus=296	max_right_plus=287	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.20	new_junction_read_count=136	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	read_count_offset=12	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=282	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=130
JC	794	.	NC_000913	4117984	1	NC_000913	4507459	1	0	alignment_overlap=2	coverage_minus=63	coverage_plus=80	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__4117982__1__NC_000913__4507459__1__2____300__300__0__1	max_left=293	max_left_minus=293	max_left_plus=291	max_min_left=144	max_min_left_minus=131	max_min_left_plus=144	max_min_right=149	max_min_right_minus=149	max_min_right_plus=140	max_pos_hash_score=584	max_right=296	max_right_minus=296	max_right_plus=287	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.28	new_junction_read_count=145	polymorphism_frequency=1.000e+00	pos_hash_score=95	prediction=consensus	read_count_offset=2	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=143
JC	795	.	NC_000913	4295870	-1	NC_000913	4296434	1	0	alignment_overlap=39	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.501e-02	junction_possible_overlap_registers=255	key=NC_000913__4295870__-1__NC_000913__4296395__1__39____300__300__0__0	max_left=179	max_left_minus=179	max_left_plus=178	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=78	max_min_right_minus=78	max_min_right_plus=78	max_pos_hash_score=510	max_right=147	max_right_minus=147	max_right_plus=147	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=6.501e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=39	side_1_possible_overlap_registers=294	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=255	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=7
JC	796	.	NC_000913	4392437	-1	NC_000913	4392661	1	0	alignment_overlap=78	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.908e-02	junction_possible_overlap_registers=216	key=NC_000913__4392437__-1__NC_000913__4392583__1__78____300__300__0__0	max_left=190	max_left_minus=150	max_left_plus=190	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=89	max_min_right_minus=72	max_min_right_plus=89	max_pos_hash_score=432	max_right=89	max_right_minus=72	max_right_plus=89	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.908e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=3
JC	797	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=10	coverage_plus=16	flanking_left=300	flanking_right=300	frequency=1.600e-01	junction_possible_overlap_registers=285	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=287	max_left_minus=284	max_left_plus=287	max_min_left=134	max_min_left_minus=134	max_min_left_plus=116	max_min_right=114	max_min_right_minus=114	max_min_right_plus=86	max_pos_hash_score=570	max_right=278	max_right_minus=278	max_right_plus=273	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.25	new_junction_read_count=28	polymorphism_frequency=1.600e-01	pos_hash_score=24	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.46	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=166	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=26
JC	798	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=24	coverage_plus=24	flanking_left=300	flanking_right=300	frequency=2.452e-01	junction_possible_overlap_registers=285	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=282	max_left_minus=278	max_left_plus=282	max_min_left=144	max_min_left_minus=144	max_min_left_plus=141	max_min_right=140	max_min_right_minus=140	max_min_right_plus=74	max_pos_hash_score=570	max_right=285	max_right_minus=241	max_right_plus=285	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.44	new_junction_read_count=49	polymorphism_frequency=2.452e-01	pos_hash_score=33	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.53	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=174	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=48
JC	799	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=7	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.291e-01	junction_possible_overlap_registers=205	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=154	max_left_minus=154	max_left_plus=144	max_min_left=95	max_min_left_minus=95	max_min_left_plus=65	max_min_right=98	max_min_right_minus=82	max_min_right_plus=98	max_pos_hash_score=410	max_right=146	max_right_minus=134	max_right_plus=146	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.15	new_junction_read_count=12	polymorphism_frequency=1.291e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=89	side_1_possible_overlap_registers=294	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=11
UN	800	.	NC_000913	15655	15655
UN	801	.	NC_000913	15663	16453
UN	802	.	NC_000913	16455	16455
UN	803	.	NC_000913	20062	20276
UN	804	.	NC_000913	168355	168703
UN	805	.	NC_000913	182569	182988
UN	806	.	NC_000913	224019	224500
UN	807	.	NC_000913	225168	225317
UN	808	.	NC_000913	225320	225320
UN	809	.	NC_000913	225322	225323
UN	810	.	NC_000913	227273	228392
UN	811	.	NC_000913	257908	258683
UN	812	.	NC_000913	270804	270804
UN	813	.	NC_000913	270808	271000
UN	814	.	NC_000913	274245	274246
UN	815	.	NC_000913	274248	274863
UN	816	.	NC_000913	274865	274865
UN	817	.	NC_000913	279448	279657
UN	818	.	NC_000913	290920	291129
UN	819	.	NC_000913	315513	316196
UN	820	.	NC_000913	381534	382335
UN	821	.	NC_000913	391989	392686
UN	822	.	NC_000913	402391	403113
UN	823	.	NC_000913	526122	526438
UN	824	.	NC_000913	567057	567058
UN	825	.	NC_000913	567060	567764
UN	826	.	NC_000913	567766	567766
UN	827	.	NC_000913	574871	575509
UN	828	.	NC_000913	578427	578427
UN	829	.	NC_000913	578574	578574
UN	830	.	NC_000913	579146	579146
UN	831	.	NC_000913	579271	579271
UN	832	.	NC_000913	580115	580115
UN	833	.	NC_000913	608274	608274
UN	834	.	NC_000913	608277	609087
UN	835	.	NC_000913	688131	688760
UN	836	.	NC_000913	1094509	1095224
UN	837	.	NC_000913	1196374	1211413
UN	838	.	NC_000913	1299499	1300697
UN	839	.	NC_000913	1396324	1396958
UN	840	.	NC_000913	1429164	1429164
UN	841	.	NC_000913	1429171	1429171
UN	842	.	NC_000913	1429522	1429522
UN	843	.	NC_000913	1429537	1429537
UN	844	.	NC_000913	1429558	1429558
UN	845	.	NC_000913	1429569	1429569
UN	846	.	NC_000913	1429571	1429571
UN	847	.	NC_000913	1429580	1429580
UN	848	.	NC_000913	1429597	1429598
UN	849	.	NC_000913	1429609	1429609
UN	850	.	NC_000913	1429615	1429615
UN	851	.	NC_000913	1429632	1429632
UN	852	.	NC_000913	1429682	1429682
UN	853	.	NC_000913	1468188	1468974
UN	854	.	NC_000913	1469550	1470228
UN	855	.	NC_000913	1470232	1470232
UN	856	.	NC_000913	1528558	1528913
UN	857	.	NC_000913	1632815	1633348
UN	858	.	NC_000913	1634370	1634370
UN	859	.	NC_000913	1634382	1634382
UN	860	.	NC_000913	1634388	1634388
UN	861	.	NC_000913	1634404	1634404
UN	862	.	NC_000913	1634482	1634482
UN	863	.	NC_000913	1651113	1651113
UN	864	.	NC_000913	1651116	1651265
UN	865	.	NC_000913	1651269	1651269
UN	866	.	NC_000913	1651275	1651276
UN	867	.	NC_000913	1757529	1757591
UN	868	.	NC_000913	1978495	1979270
UN	869	.	NC_000913	2066991	2066991
UN	870	.	NC_000913	2066999	2067035
UN	871	.	NC_000913	2067037	2067037
UN	872	.	NC_000913	2069204	2069205
UN	873	.	NC_000913	2069210	2069210
UN	874	.	NC_000913	2069213	2069213
UN	875	.	NC_000913	2069216	2070005
UN	876	.	NC_000913	2092982	2092985
UN	877	.	NC_000913	2102028	2102663
UN	878	.	NC_000913	2170444	2170445
UN	879	.	NC_000913	2170449	2171168
UN	880	.	NC_000913	2289199	2289827
UN	881	.	NC_000913	2514537	2514537
UN	882	.	NC_000913	2514540	2515353
UN	883	.	NC_000913	2515355	2515355
UN	884	.	NC_000913	2558699	2565488
UN	885	.	NC_000913	2726336	2729013
UN	886	.	NC_000913	2729790	2729790
UN	887	.	NC_000913	2729795	2729796
UN	888	.	NC_000913	2729798	2729798
UN	889	.	NC_000913	2729801	2729801
UN	890	.	NC_000913	2729808	2729809
UN	891	.	NC_000913	2729812	2729812
UN	892	.	NC_000913	2729815	2730679
UN	893	.	NC_000913	2996630	2997418
UN	894	.	NC_000913	3130426	3131060
UN	895	.	NC_000913	3186385	3187156
UN	896	.	NC_000913	3258933	3258937
UN	897	.	NC_000913	3349206	3366470
UN	898	.	NC_000913	3423939	3424373
UN	899	.	NC_000913	3424932	3424933
UN	900	.	NC_000913	3424935	3424935
UN	901	.	NC_000913	3424939	3424939
UN	902	.	NC_000913	3424941	3424941
UN	903	.	NC_000913	3424944	3426576
UN	904	.	NC_000913	3427223	3428281
UN	905	.	NC_000913	3428283	3428284
UN	906	.	NC_000913	3583710	3583914
UN	907	.	NC_000913	3619537	3620833
UN	908	.	NC_000913	3621361	3622014
UN	909	.	NC_000913	3622016	3622016
UN	910	.	NC_000913	3622021	3622022
UN	911	.	NC_000913	3652299	3652299
UN	912	.	NC_000913	3652304	3652304
UN	913	.	NC_000913	3652306	3652306
UN	914	.	NC_000913	3652313	3652950
UN	915	.	NC_000913	3762539	3765000
UN	916	.	NC_000913	3942300	3943136
UN	917	.	NC_000913	3944348	3945281
UN	918	.	NC_000913	3945287	3945287
UN	919	.	NC_000913	4035423	4036830
UN	920	.	NC_000913	4038106	4038403
UN	921	.	NC_000913	4039011	4039100
UN	922	.	NC_000913	4039103	4039103
UN	923	.	NC_000913	4039674	4040317
UN	924	.	NC_000913	4166585	4166599
UN	925	.	NC_000913	4166912	4168488
UN	926	.	NC_000913	4168808	4171372
UN	927	.	NC_000913	4171375	4171375
UN	928	.	NC_000913	4208411	4209460
UN	929	.	NC_000913	4210304	4212845
UN	930	.	NC_000913	4212848	4212848
UN	931	.	NC_000913	4498457	4498457
UN	932	.	NC_000913	4498460	4498460
UN	933	.	NC_000913	4498470	4499233
UN	934	.	NC_000913	4507754	4508408
UN	935	.	NC_000913	4508410	4508411