#=GENOME_DIFF	1.0
#=CREATED	03:05:30 11 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9731_S40_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9731_S40_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9731_S40_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9731_S40_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9731_S40_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	386260042
#=CONVERTED-READS	1306489
#=INPUT-BASES	386339625
#=INPUT-READS	1306762
#=MAPPED-BASES	373923720
#=MAPPED-READS	1265560
DEL	1	351,365	NC_000913	62379	25896
SNP	2	165	NC_000913	89089	A
SNP	3	166	NC_000913	89103	C
SNP	4	167	NC_000913	89143	G
SNP	5	168	NC_000913	89145	T
SNP	6	169	NC_000913	89239	A
SNP	7	170	NC_000913	89241	A
SNP	8	171	NC_000913	89263	G
SNP	9	172	NC_000913	89316	C
SNP	10	173	NC_000913	89321	G
SNP	11	174	NC_000913	89471	G
SNP	12	175	NC_000913	89570	C
SNP	13	176	NC_000913	89699	C
SNP	14	177	NC_000913	89754	C
SNP	15	178	NC_000913	90432	G
SNP	16	179	NC_000913	90435	C
SNP	17	180	NC_000913	91904	A
SNP	18	181	NC_000913	91916	T
SNP	19	182	NC_000913	91922	A
SNP	20	183	NC_000913	91949	T
SNP	21	184	NC_000913	92096	T
SNP	22	185	NC_000913	92162	T
SNP	23	186	NC_000913	92327	T
SNP	24	187	NC_000913	92354	G
SNP	25	188	NC_000913	92687	G
SNP	26	189	NC_000913	92810	C
SNP	27	190	NC_000913	92843	G
SNP	28	191	NC_000913	94278	A
SNP	29	192	NC_000913	134256	T
SNP	30	194	NC_000913	246747	T
DEL	31	352,366	NC_000913	257908	776
SNP	32	195	NC_000913	284535	G
SNP	33	196	NC_000913	313543	A
DEL	34	353,369	NC_000913	339199	36219
SUB	35	197,198	NC_000913	480295	2	AA
SNP	36	199	NC_000913	553161	A
SNP	37	201	NC_000913	690948	A
SNP	38	202	NC_000913	700038	A
MOB	39	370,372	NC_000913	789812	IS2	-1	5
SNP	40	203	NC_000913	791688	A
SUB	41	204,205	NC_000913	809217	2	AG
MOB	42	367,368	NC_000913	922378	IS1	-1	9
SNP	43	207	NC_000913	968837	A
SNP	44	208	NC_000913	1040126	T
SNP	45	209	NC_000913	1061935	A
MOB	46	371,375	NC_000913	1093481	IS2	1	5
SNP	47	211	NC_000913	1100070	A
SUB	48	212,213	NC_000913	1111727	2	TT
SNP	49	214	NC_000913	1123556	T
SNP	50	215	NC_000913	1169836	G
SNP	51	216	NC_000913	1189980	G
SNP	52	217	NC_000913	1196220	T
SNP	53	218	NC_000913	1196232	T
SNP	54	219	NC_000913	1196245	C
SNP	55	220	NC_000913	1196247	G
SNP	56	221	NC_000913	1196277	T
SNP	57	222	NC_000913	1196280	C
SNP	58	223	NC_000913	1196283	G
SNP	59	224	NC_000913	1196292	T
SNP	60	225	NC_000913	1196304	A
SNP	61	226	NC_000913	1196316	A
DEL	62	355,379	NC_000913	1299499	1199
SNP	63	233	NC_000913	1301992	T
SNP	64	234	NC_000913	1306736	G
SNP	65	235	NC_000913	1310770	G
SNP	66	236	NC_000913	1331947	T
SNP	67	238	NC_000913	1337394	G
SNP	68	239	NC_000913	1357202	T
SNP	69	240	NC_000913	1358859	C
SNP	70	241	NC_000913	1412897	A
SNP	71	242	NC_000913	1428087	T
SNP	72	247	NC_000913	1610076	G
SNP	73	248	NC_000913	1610440	T
SNP	74	250	NC_000913	1643679	T
MOB	75	381,382	NC_000913	1651851	IS2	-1	5
SNP	76	251	NC_000913	1652331	C
DEL	77	356,383	NC_000913	1704350	390
SNP	78	252	NC_000913	1721136	T
SNP	79	253	NC_000913	1738377	T
SNP	80	254	NC_000913	1776715	T
SNP	81	255	NC_000913	1856968	A
SNP	82	256	NC_000913	1894839	C
SNP	83	259	NC_000913	1975224	A
SNP	84	260	NC_000913	1987499	A
SNP	85	261	NC_000913	2003276	C
SNP	86	262	NC_000913	2003462	A
SNP	87	263	NC_000913	2040433	A
DEL	88	264,265	NC_000913	2173363	2
SNP	89	266	NC_000913	2175991	A
SNP	90	267	NC_000913	2188087	C
DEL	91	358,388	NC_000913	2238416	19
DEL	92	359,389	NC_000913	2259357	3552
DEL	93	268	NC_000913	2263441	1
MOB	94	387,390	NC_000913	2317414	IS2	1	5
SNP	95	270	NC_000913	2384808	T
SNP	96	271	NC_000913	2410419	A
SNP	97	273	NC_000913	2484827	T
SNP	98	275	NC_000913	2700747	A
SNP	99	276	NC_000913	2748396	A
SNP	100	277	NC_000913	2756976	A
SNP	101	278	NC_000913	2780060	A
SNP	102	279	NC_000913	2792209	A
SNP	103	280	NC_000913	2800435	A
SNP	104	281	NC_000913	2810925	A
SNP	105	282	NC_000913	2817850	A
SNP	106	283	NC_000913	2825328	A
SNP	107	284	NC_000913	2841238	A
SNP	108	285	NC_000913	2863773	T
SNP	109	286	NC_000913	2878077	T
SNP	110	287	NC_000913	2889365	T
SNP	111	288	NC_000913	2905825	T
MOB	112	395,396	NC_000913	2913392	IS2	-1	5
SNP	113	289	NC_000913	2926292	T
SUB	114	293,294	NC_000913	3088010	2	TT
SUB	115	295,296	NC_000913	3336411	2	AT
SNP	116	297	NC_000913	3367944	A
SNP	117	298	NC_000913	3388041	G
SNP	118	299	NC_000913	3399929	T
SNP	119	300	NC_000913	3421921	A
SNP	120	302	NC_000913	3436697	A
SNP	121	303	NC_000913	3449779	A
SNP	122	304	NC_000913	3468768	T
SNP	123	305	NC_000913	3474425	C
SNP	124	306	NC_000913	3543877	A
INS	125	307	NC_000913	3560455	G
SNP	126	309	NC_000913	3629921	T
SNP	127	310	NC_000913	3682515	T
SNP	128	311	NC_000913	3696909	A
SNP	129	312	NC_000913	3707947	A
SNP	130	313	NC_000913	3725176	G
SNP	131	314	NC_000913	3761230	A
SNP	132	315	NC_000913	3771979	T
INS	133	316	NC_000913	3815883	C
INS	134	401	NC_000913	3822651	CAGGAT	repeat_length=6	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CAGGAT
SNP	135	317	NC_000913	3823162	T
SNP	136	318	NC_000913	3869637	A
SNP	137	319	NC_000913	3878536	A
SNP	138	320	NC_000913	3883678	A
SNP	139	322	NC_000913	3912074	A
SNP	140	323	NC_000913	3931069	T
MOB	141	402,403	NC_000913	3938983	IS2	-1	5
SNP	142	325	NC_000913	3955304	T
SNP	143	326	NC_000913	3988115	T
SNP	144	327	NC_000913	3993531	C
SNP	145	328	NC_000913	3996049	A
SNP	146	329	NC_000913	4011802	T
SNP	147	330	NC_000913	4084903	G
SNP	148	331	NC_000913	4092703	G
SNP	149	332	NC_000913	4124455	G
SNP	150	334	NC_000913	4210041	A
MOB	151	385,399	NC_000913	4289448	IS1	1	9
INS	152	335,336	NC_000913	4296381	GC
SNP	153	337	NC_000913	4337390	T
SNP	154	338	NC_000913	4338916	T
SNP	155	339	NC_000913	4349993	T
SNP	156	341	NC_000913	4375354	A
SNP	157	342	NC_000913	4380367	T
SNP	158	343	NC_000913	4425688	A
SNP	159	344	NC_000913	4425696	A
SUB	160	345,346	NC_000913	4436956	2	TT
SNP	161	347	NC_000913	4532409	G
SNP	162	348	NC_000913	4546601	T
SNP	163	349	NC_000913	4578548	A
SNP	164	350	NC_000913	4585230	G
RA	165	.	NC_000913	89089	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=259.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=50/26	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=50/26	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/26
RA	166	.	NC_000913	89103	0	G	C	consensus_score=314.4	frequency=1	major_base=C	major_cov=55/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/27
RA	167	.	NC_000913	89143	0	A	G	consensus_score=337.6	frequency=1	major_base=G	major_cov=64/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/27
RA	168	.	NC_000913	89145	0	G	T	consensus_score=319.0	frequency=1	major_base=T	major_cov=64/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/27
RA	169	.	NC_000913	89239	0	G	A	consensus_score=299.9	frequency=1	major_base=A	major_cov=58/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/36
RA	170	.	NC_000913	89241	0	C	A	consensus_score=316.1	frequency=1	major_base=A	major_cov=58/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/36
RA	171	.	NC_000913	89263	0	A	G	bias_e_value=3664350	bias_p_value=0.789449	consensus_score=393.8	fisher_strand_p_value=0.425926	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=62/45	major_frequency=9.907e-01	minor_base=A	minor_cov=0/1	new_cov=62/45	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=62/46
RA	172	.	NC_000913	89316	0	T	C	consensus_score=449.0	frequency=1	major_base=C	major_cov=67/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/52
RA	173	.	NC_000913	89321	0	A	G	bias_e_value=15228.5	bias_p_value=0.00328084	consensus_score=367.1	fisher_strand_p_value=0.000368368	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=66/42	major_frequency=9.231e-01	minor_base=T	minor_cov=0/9	new_cov=66/42	polymorphism_frequency=9.231e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=66/51
RA	174	.	NC_000913	89471	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=434.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/69	major_frequency=9.915e-01	minor_base=A	minor_cov=0/1	new_cov=47/69	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/70
RA	175	.	NC_000913	89570	0	A	C	consensus_score=344.4	frequency=1	major_base=C	major_cov=35/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/58
RA	176	.	NC_000913	89699	0	T	C	bias_e_value=3798710	bias_p_value=0.818395	consensus_score=224.1	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/35	major_frequency=9.846e-01	minor_base=A	minor_cov=1/0	new_cov=29/35	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	177	.	NC_000913	89754	0	T	C	consensus_score=241.0	frequency=1	major_base=C	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	178	.	NC_000913	90432	0	A	G	bias_e_value=3868310	bias_p_value=0.83339	consensus_score=195.2	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=28/25	major_frequency=9.815e-01	minor_base=A	minor_cov=0/1	new_cov=28/25	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=28/26
RA	179	.	NC_000913	90435	0	T	C	bias_e_value=3858020	bias_p_value=0.831174	consensus_score=185.5	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=0.99373	major_base=C	major_cov=28/25	major_frequency=9.815e-01	minor_base=T	minor_cov=0/1	new_cov=28/25	polymorphism_frequency=9.815e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=28/26
RA	180	.	NC_000913	91904	0	G	A	consensus_score=223.6	frequency=1	major_base=A	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	181	.	NC_000913	91916	0	C	T	consensus_score=215.8	frequency=1	major_base=T	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	182	.	NC_000913	91922	0	G	A	consensus_score=218.0	frequency=1	major_base=A	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	183	.	NC_000913	91949	0	C	T	consensus_score=212.8	frequency=1	major_base=T	major_cov=30/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/37
RA	184	.	NC_000913	92096	0	A	T	consensus_score=245.7	frequency=1	major_base=T	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	185	.	NC_000913	92162	0	C	T	consensus_score=238.8	frequency=1	major_base=T	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	186	.	NC_000913	92327	0	G	T	bias_e_value=3546960	bias_p_value=0.764159	consensus_score=266.7	fisher_strand_p_value=0.397436	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/30	major_frequency=9.872e-01	minor_base=G	minor_cov=0/1	new_cov=47/30	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/31
RA	187	.	NC_000913	92354	0	A	G	consensus_score=274.5	frequency=1	major_base=G	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	188	.	NC_000913	92687	0	A	G	consensus_score=285.8	frequency=1	major_base=G	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	189	.	NC_000913	92810	0	T	C	bias_e_value=2463570	bias_p_value=0.530752	consensus_score=285.3	fisher_strand_p_value=0.205556	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=35/44	major_frequency=9.753e-01	minor_base=A	minor_cov=2/0	new_cov=35/44	polymorphism_frequency=9.753e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	190	.	NC_000913	92843	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=261.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=36/35	major_frequency=9.861e-01	minor_base=A	minor_cov=0/1	new_cov=36/35	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/36
RA	191	.	NC_000913	94278	0	G	A	consensus_score=260.2	frequency=1	major_base=A	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	192	.	NC_000913	134256	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=228.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/36	major_frequency=9.853e-01	minor_base=G	minor_cov=0/1	new_cov=31/36	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=31/37
RA	193	.	NC_000913	228689	0	T	.	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.9	fisher_strand_p_value=1	frequency=2.909e-01	ks_quality_p_value=1	major_base=T	major_cov=36/42	major_frequency=7.091e-01	minor_base=.	minor_cov=15/17	new_cov=15/17	polymorphism_frequency=2.909e-01	polymorphism_score=134.9	prediction=polymorphism	ref_cov=36/42	total_cov=51/60
RA	194	.	NC_000913	246747	0	G	T	consensus_score=371.1	frequency=1	major_base=T	major_cov=54/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/52
RA	195	.	NC_000913	284535	0	T	G	consensus_score=134.1	frequency=1	major_base=G	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	196	.	NC_000913	313543	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=241.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/38	major_frequency=9.861e-01	minor_base=G	minor_cov=0/1	new_cov=33/38	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/39
RA	197	.	NC_000913	480295	0	G	A	consensus_score=351.9	frequency=1	major_base=A	major_cov=38/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/58
RA	198	.	NC_000913	480296	0	G	A	consensus_score=351.0	frequency=1	major_base=A	major_cov=38/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/58
RA	199	.	NC_000913	553161	0	G	A	consensus_score=193.3	frequency=1	major_base=A	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	200	.	NC_000913	590946	0	C	T	bias_e_value=3757.62	bias_p_value=0.000809545	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.0	fisher_strand_p_value=7.73404e-05	frequency=2.239e-01	ks_quality_p_value=1	major_base=C	major_cov=24/28	major_frequency=7.761e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.239e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=24/28	total_cov=40/28
RA	201	.	NC_000913	690948	0	G	A	bias_e_value=3883270	bias_p_value=0.836615	consensus_score=252.5	fisher_strand_p_value=0.486111	frequency=1	ks_quality_p_value=0.999609	major_base=A	major_cov=34/37	major_frequency=9.861e-01	minor_base=C	minor_cov=1/0	new_cov=34/37	polymorphism_frequency=9.861e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	202	.	NC_000913	700038	0	G	A	consensus_score=180.0	frequency=1	major_base=A	major_cov=36/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/17
RA	203	.	NC_000913	791688	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=321.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/44	major_frequency=9.896e-01	minor_base=G	minor_cov=1/0	new_cov=51/44	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/44
RA	204	.	NC_000913	809217	0	C	A	consensus_score=251.0	frequency=1	major_base=A	major_cov=50/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/24
RA	205	.	NC_000913	809218	0	A	G	consensus_score=274.5	frequency=1	major_base=G	major_cov=50/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/24
RA	206	.	NC_000913	847955	0	G	A	bias_e_value=8.9506e-06	bias_p_value=1.92832e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.4	fisher_strand_p_value=6.13688e-14	frequency=3.186e-01	ks_quality_p_value=1	major_base=G	major_cov=54/23	major_frequency=6.814e-01	minor_base=A	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.186e-01	polymorphism_score=45.2	prediction=polymorphism	ref_cov=54/23	total_cov=54/59
RA	207	.	NC_000913	968837	0	G	A	consensus_score=194.6	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	208	.	NC_000913	1040126	0	G	T	consensus_score=297.3	frequency=1	major_base=T	major_cov=40/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/46
RA	209	.	NC_000913	1061935	0	G	A	consensus_score=225.2	frequency=1	major_base=A	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	210	.	NC_000913	1097118	0	C	A	bias_e_value=3764860	bias_p_value=0.811104	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.2	fisher_strand_p_value=0.67692	frequency=2.059e-01	ks_quality_p_value=0.668071	major_base=C	major_cov=9/18	major_frequency=7.941e-01	minor_base=A	minor_cov=3/4	new_cov=3/4	polymorphism_frequency=2.059e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=9/18	total_cov=12/22
RA	211	.	NC_000913	1100070	0	G	A	consensus_score=187.2	frequency=1	major_base=A	major_cov=31/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/26
RA	212	.	NC_000913	1111727	0	C	T	consensus_score=329.3	frequency=1	major_base=T	major_cov=55/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/39
RA	213	.	NC_000913	1111728	0	C	T	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=336.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997943	major_base=T	major_cov=54/39	major_frequency=9.894e-01	minor_base=G	minor_cov=1/0	new_cov=54/39	polymorphism_frequency=9.894e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=55/39
RA	214	.	NC_000913	1123556	0	C	T	consensus_score=194.8	frequency=1	major_base=T	major_cov=20/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/41
RA	215	.	NC_000913	1169836	0	A	G	consensus_score=238.6	frequency=1	major_base=G	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	216	.	NC_000913	1189980	0	A	G	consensus_score=246.3	frequency=1	major_base=G	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	217	.	NC_000913	1196220	0	C	T	consensus_score=107.7	frequency=1	major_base=T	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	218	.	NC_000913	1196232	0	C	T	consensus_score=95.1	frequency=1	major_base=T	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	219	.	NC_000913	1196245	0	T	C	consensus_score=94.2	frequency=1	major_base=C	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	220	.	NC_000913	1196247	0	A	G	consensus_score=98.1	frequency=1	major_base=G	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	221	.	NC_000913	1196277	0	C	T	consensus_score=83.3	frequency=1	major_base=T	major_cov=19/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/14
RA	222	.	NC_000913	1196280	0	G	C	consensus_score=84.5	frequency=1	major_base=C	major_cov=19/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/14
RA	223	.	NC_000913	1196283	0	A	G	consensus_score=89.5	frequency=1	major_base=G	major_cov=19/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/14
RA	224	.	NC_000913	1196292	0	C	T	consensus_score=72.6	frequency=1	major_base=T	major_cov=18/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	225	.	NC_000913	1196304	0	G	A	consensus_score=72.3	frequency=1	major_base=A	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	226	.	NC_000913	1196316	0	T	A	consensus_score=65.0	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	227	.	NC_000913	1196325	0	A	G	consensus_score=46.7	deleted=1	frequency=1	major_base=G	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	228	.	NC_000913	1196352	0	C	A	consensus_score=21.0	deleted=1	frequency=1	major_base=A	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	229	.	NC_000913	1286793	0	A	G	bias_e_value=4634360	bias_p_value=0.998428	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.6	fisher_strand_p_value=1	frequency=2.857e-01	ks_quality_p_value=0.944459	major_base=A	major_cov=24/16	major_frequency=7.143e-01	minor_base=G	minor_cov=10/6	new_cov=10/6	polymorphism_frequency=2.857e-01	polymorphism_score=43.9	prediction=polymorphism	ref_cov=24/16	total_cov=34/22
RA	230	.	NC_000913	1286831	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.5	fisher_strand_p_value=1	frequency=2.456e-01	ks_quality_p_value=1	major_base=T	major_cov=28/15	major_frequency=7.544e-01	minor_base=A	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=2.456e-01	polymorphism_score=43.3	prediction=polymorphism	ref_cov=28/15	total_cov=39/21
RA	231	.	NC_000913	1286870	0	C	A	bias_e_value=4480790	bias_p_value=0.965343	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.2	fisher_strand_p_value=0.74855	frequency=2.364e-01	ks_quality_p_value=1	major_base=C	major_cov=28/14	major_frequency=7.636e-01	minor_base=A	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=2.364e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=28/14	total_cov=36/19
RA	232	.	NC_000913	1286874	0	G	A	bias_e_value=3743450	bias_p_value=0.806492	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.4	fisher_strand_p_value=0.48453	frequency=2.000e-01	ks_quality_p_value=0.921439	major_base=G	major_cov=30/14	major_frequency=8.000e-01	minor_base=A	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.000e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=30/14	total_cov=36/19
RA	233	.	NC_000913	1301992	0	A	T	consensus_score=346.3	frequency=1	major_base=T	major_cov=44/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/55
RA	234	.	NC_000913	1306736	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=308.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=57/24	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=57/24	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/24
RA	235	.	NC_000913	1310770	0	A	G	consensus_score=418.5	frequency=1	major_base=G	major_cov=65/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/45
RA	236	.	NC_000913	1331947	0	C	T	consensus_score=272.4	frequency=1	major_base=T	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	237	.	NC_000913	1334966	0	A	C	bias_e_value=6.61344	bias_p_value=1.4248e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.0	fisher_strand_p_value=8.2297e-08	frequency=2.558e-01	ks_quality_p_value=1	major_base=A	major_cov=52/44	major_frequency=7.442e-01	minor_base=C	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.558e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=52/44	total_cov=85/44
RA	238	.	NC_000913	1337394	0	A	G	bias_e_value=2171750	bias_p_value=0.467884	consensus_score=248.6	fisher_strand_p_value=0.168116	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=41/27	major_frequency=9.714e-01	minor_base=T	minor_cov=0/2	new_cov=41/27	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	239	.	NC_000913	1357202	0	C	T	consensus_score=252.6	frequency=1	major_base=T	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	240	.	NC_000913	1358859	0	T	C	consensus_score=266.8	frequency=1	major_base=C	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	241	.	NC_000913	1412897	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=392.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=63/48	major_frequency=9.911e-01	minor_base=C	minor_cov=1/0	new_cov=63/48	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/48
RA	242	.	NC_000913	1428087	0	C	T	consensus_score=242.1	frequency=1	major_base=T	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	243	.	NC_000913	1466432	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.3	fisher_strand_p_value=1	frequency=2.308e-01	ks_quality_p_value=1	major_base=A	major_cov=23/17	major_frequency=7.692e-01	minor_base=G	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.308e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=23/17	total_cov=30/23
RA	244	.	NC_000913	1466438	0	T	G	bias_e_value=3471540	bias_p_value=0.74791	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.8	fisher_strand_p_value=0.506576	frequency=2.115e-01	ks_quality_p_value=0.750599	major_base=T	major_cov=24/17	major_frequency=7.885e-01	minor_base=G	minor_cov=5/6	new_cov=5/6	polymorphism_frequency=2.115e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=24/17	total_cov=29/23
RA	245	.	NC_000913	1502770	0	T	C	bias_e_value=0.00942006	bias_p_value=2.02946e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.4	fisher_strand_p_value=8.38554e-11	frequency=2.737e-01	ks_quality_p_value=1	major_base=T	major_cov=48/21	major_frequency=7.263e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.737e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=48/21	total_cov=48/47
RA	246	.	NC_000913	1502772	0	G	A	bias_e_value=0.661328	bias_p_value=1.42477e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.6	fisher_strand_p_value=7.21508e-09	frequency=2.316e-01	ks_quality_p_value=1	major_base=G	major_cov=48/25	major_frequency=7.684e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.316e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=48/25	total_cov=48/47
RA	247	.	NC_000913	1610076	0	T	G	bias_e_value=3594060	bias_p_value=0.774307	consensus_score=352.0	fisher_strand_p_value=0.408602	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=55/37	major_frequency=9.892e-01	minor_base=A	minor_cov=0/1	new_cov=55/37	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=56/38
RA	248	.	NC_000913	1610440	0	C	T	consensus_score=342.5	frequency=1	major_base=T	major_cov=41/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/56
RA	249	.	NC_000913	1631903	0	G	T	bias_e_value=28.0936	bias_p_value=6.05251e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.9	fisher_strand_p_value=3.83717e-07	frequency=3.467e-01	ks_quality_p_value=1	major_base=G	major_cov=27/22	major_frequency=6.533e-01	minor_base=T	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.467e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=27/22	total_cov=27/48
RA	250	.	NC_000913	1643679	0	A	T	consensus_score=282.7	frequency=1	major_base=T	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	251	.	NC_000913	1652331	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=350.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=60/33	major_frequency=9.894e-01	minor_base=A	minor_cov=1/0	new_cov=60/33	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/33
RA	252	.	NC_000913	1721136	0	C	T	consensus_score=398.1	frequency=1	major_base=T	major_cov=47/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/66
RA	253	.	NC_000913	1738377	0	C	T	consensus_score=219.9	frequency=1	major_base=T	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	254	.	NC_000913	1776715	0	A	T	bias_e_value=3869820	bias_p_value=0.833716	consensus_score=285.8	fisher_strand_p_value=0.481928	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/39	major_frequency=9.880e-01	minor_base=G	minor_cov=0/1	new_cov=43/39	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	255	.	NC_000913	1856968	0	T	A	bias_e_value=3796000	bias_p_value=0.817812	consensus_score=355.5	fisher_strand_p_value=0.460784	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=55/46	major_frequency=9.902e-01	minor_base=G	minor_cov=0/1	new_cov=55/46	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/47
RA	256	.	NC_000913	1894839	0	T	C	consensus_score=325.8	frequency=1	major_base=C	major_cov=52/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/33
RA	257	.	NC_000913	1902613	0	C	A	bias_e_value=6.15733	bias_p_value=1.32654e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.9	fisher_strand_p_value=7.62871e-08	frequency=3.380e-01	ks_quality_p_value=1	major_base=C	major_cov=18/29	major_frequency=6.620e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.380e-01	polymorphism_score=19.3	prediction=polymorphism	ref_cov=18/29	total_cov=42/30
RA	258	.	NC_000913	1922815	0	C	A	bias_e_value=1035.57	bias_p_value=0.000223103	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.9	fisher_strand_p_value=1.8775e-05	frequency=3.010e-01	ks_quality_p_value=1	major_base=C	major_cov=18/54	major_frequency=6.990e-01	minor_base=A	minor_cov=22/9	new_cov=22/9	polymorphism_frequency=3.010e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=18/54	total_cov=40/63
RA	259	.	NC_000913	1975224	0	G	A	consensus_score=255.6	frequency=1	major_base=A	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	260	.	NC_000913	1987499	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=283.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/34	major_frequency=9.875e-01	minor_base=G	minor_cov=1/0	new_cov=45/34	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	261	.	NC_000913	2003276	0	A	C	consensus_score=296.4	frequency=1	major_base=C	major_cov=27/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/54
RA	262	.	NC_000913	2003462	0	C	A	bias_e_value=3887480	bias_p_value=0.837521	consensus_score=271.2	fisher_strand_p_value=0.487179	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/37	major_frequency=9.872e-01	minor_base=G	minor_cov=0/1	new_cov=40/37	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	263	.	NC_000913	2040433	0	C	A	consensus_score=220.0	frequency=1	major_base=A	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	264	.	NC_000913	2173363	0	C	.	consensus_score=378.2	frequency=1	major_base=.	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	265	.	NC_000913	2173364	0	C	.	consensus_score=378.2	frequency=1	major_base=.	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	266	.	NC_000913	2175991	0	T	A	consensus_score=202.9	frequency=1	major_base=A	major_cov=41/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/22
RA	267	.	NC_000913	2188087	0	T	C	consensus_score=487.9	frequency=1	major_base=C	major_cov=68/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/62
RA	268	.	NC_000913	2263441	0	C	.	consensus_score=404.9	frequency=1	major_base=.	major_cov=61/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/22
RA	269	.	NC_000913	2288418	0	G	T	bias_e_value=0.00633963	bias_p_value=1.36581e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.3	fisher_strand_p_value=5.54873e-11	frequency=3.587e-01	ks_quality_p_value=1	major_base=G	major_cov=38/21	major_frequency=6.413e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=3.587e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=38/21	total_cov=38/54
RA	270	.	NC_000913	2384808	0	C	T	bias_e_value=3888800	bias_p_value=0.837805	consensus_score=304.8	fisher_strand_p_value=0.489362	frequency=1	ks_quality_p_value=0.996346	major_base=T	major_cov=48/45	major_frequency=9.894e-01	minor_base=C	minor_cov=0/1	new_cov=48/45	polymorphism_frequency=9.894e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=48/46
RA	271	.	NC_000913	2410419	0	G	A	consensus_score=283.7	frequency=1	major_base=A	major_cov=45/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	272	.	NC_000913	2477265	0	A	C	bias_e_value=5.53838e-06	bias_p_value=1.19319e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.1	fisher_strand_p_value=3.73836e-14	frequency=2.299e-01	ks_quality_p_value=1	major_base=A	major_cov=7/60	major_frequency=7.701e-01	minor_base=C	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.299e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=7/60	total_cov=27/60
RA	273	.	NC_000913	2484827	0	C	T	consensus_score=354.0	frequency=1	major_base=T	major_cov=57/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/47
RA	274	.	NC_000913	2490240	0	G	T	bias_e_value=2.93644	bias_p_value=6.32629e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.2	fisher_strand_p_value=3.48108e-08	frequency=2.667e-01	ks_quality_p_value=1	major_base=G	major_cov=42/35	major_frequency=7.333e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.667e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=42/35	total_cov=42/63
RA	275	.	NC_000913	2700747	0	G	A	consensus_score=253.9	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	276	.	NC_000913	2748396	0	G	A	consensus_score=264.9	frequency=1	major_base=A	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	277	.	NC_000913	2756976	0	G	A	consensus_score=342.7	frequency=1	major_base=A	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	278	.	NC_000913	2780060	0	G	A	consensus_score=277.2	frequency=1	major_base=A	major_cov=57/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/25
RA	279	.	NC_000913	2792209	0	G	A	consensus_score=176.2	frequency=1	major_base=A	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	280	.	NC_000913	2800435	0	G	A	consensus_score=297.7	frequency=1	major_base=A	major_cov=49/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/33
RA	281	.	NC_000913	2810925	0	G	A	consensus_score=460.1	frequency=1	major_base=A	major_cov=45/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/76
RA	282	.	NC_000913	2817850	0	G	A	bias_e_value=3025820	bias_p_value=0.651885	consensus_score=224.5	fisher_strand_p_value=0.292351	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/44	major_frequency=9.048e-01	minor_base=G	minor_cov=5/3	new_cov=32/44	polymorphism_frequency=9.048e-01	polymorphism_score=7.5	prediction=consensus	ref_cov=5/3	total_cov=37/47
RA	283	.	NC_000913	2825328	0	G	A	consensus_score=218.3	frequency=1	major_base=A	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	284	.	NC_000913	2841238	0	G	A	consensus_score=248.7	frequency=1	major_base=A	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	285	.	NC_000913	2863773	0	C	T	consensus_score=216.2	frequency=1	major_base=T	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	286	.	NC_000913	2878077	0	C	T	bias_e_value=3773850	bias_p_value=0.81304	consensus_score=109.6	fisher_strand_p_value=0.495798	frequency=1	ks_quality_p_value=0.917062	major_base=T	major_cov=24/9	major_frequency=9.429e-01	minor_base=C	minor_cov=1/1	new_cov=24/9	polymorphism_frequency=9.429e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/1	total_cov=25/10
RA	287	.	NC_000913	2889365	0	C	T	consensus_score=222.4	frequency=1	major_base=T	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	288	.	NC_000913	2905825	0	C	T	consensus_score=386.0	frequency=1	major_base=T	major_cov=49/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/61
RA	289	.	NC_000913	2926292	0	C	T	consensus_score=264.2	frequency=1	major_base=T	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	290	.	NC_000913	3032307	0	C	T	bias_e_value=0.00138616	bias_p_value=2.98635e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.5	fisher_strand_p_value=1.13994e-11	frequency=3.182e-01	ks_quality_p_value=1	major_base=C	major_cov=16/44	major_frequency=6.818e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.182e-01	polymorphism_score=30.2	prediction=polymorphism	ref_cov=16/44	total_cov=44/44
RA	291	.	NC_000913	3054886	0	G	T	bias_e_value=6.42931e-06	bias_p_value=1.38513e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.9	fisher_strand_p_value=4.36076e-14	frequency=3.933e-01	ks_quality_p_value=1	major_base=G	major_cov=13/41	major_frequency=6.067e-01	minor_base=T	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.933e-01	polymorphism_score=35.1	prediction=polymorphism	ref_cov=13/41	total_cov=48/41
RA	292	.	NC_000913	3054894	0	G	T	bias_e_value=10.568	bias_p_value=2.27676e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.8	fisher_strand_p_value=1.35401e-07	frequency=3.494e-01	ks_quality_p_value=1	major_base=G	major_cov=16/38	major_frequency=6.506e-01	minor_base=T	minor_cov=26/3	new_cov=26/3	polymorphism_frequency=3.494e-01	polymorphism_score=22.8	prediction=polymorphism	ref_cov=16/38	total_cov=43/41
RA	293	.	NC_000913	3088010	0	C	T	bias_e_value=3814690	bias_p_value=0.821838	consensus_score=356.2	fisher_strand_p_value=0.466019	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=55/47	major_frequency=9.903e-01	minor_base=G	minor_cov=0/1	new_cov=55/47	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=56/48
RA	294	.	NC_000913	3088011	0	C	T	bias_e_value=3814690	bias_p_value=0.821838	consensus_score=352.0	fisher_strand_p_value=0.466019	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=55/47	major_frequency=9.903e-01	minor_base=G	minor_cov=0/1	new_cov=55/47	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=56/48
RA	295	.	NC_000913	3336411	0	G	A	bias_e_value=4641480	bias_p_value=0.999962	consensus_score=227.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991295	major_base=A	major_cov=22/38	major_frequency=9.836e-01	minor_base=.	minor_cov=0/1	new_cov=22/38	polymorphism_frequency=9.836e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=0/0	total_cov=22/39
RA	296	.	NC_000913	3336412	0	A	T	bias_e_value=4641480	bias_p_value=0.999962	consensus_score=189.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991295	major_base=T	major_cov=22/38	major_frequency=9.836e-01	minor_base=A	minor_cov=0/1	new_cov=22/38	polymorphism_frequency=9.836e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/1	total_cov=22/39
RA	297	.	NC_000913	3367944	0	G	A	consensus_score=345.8	frequency=1	major_base=A	major_cov=46/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/51
RA	298	.	NC_000913	3388041	0	T	G	consensus_score=213.7	frequency=1	major_base=G	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	299	.	NC_000913	3399929	0	A	T	consensus_score=236.6	frequency=1	major_base=T	major_cov=24/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/49
RA	300	.	NC_000913	3421921	0	C	A	consensus_score=258.6	frequency=1	major_base=A	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	301	.	NC_000913	3431396	0	C	A	bias_e_value=0.254892	bias_p_value=5.49141e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.2	fisher_strand_p_value=2.64646e-09	frequency=2.558e-01	ks_quality_p_value=1	major_base=C	major_cov=45/51	major_frequency=7.442e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.558e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=45/51	total_cov=78/52
RA	302	.	NC_000913	3436697	0	G	A	bias_e_value=3791220	bias_p_value=0.816783	consensus_score=271.6	fisher_strand_p_value=0.459459	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/33	major_frequency=9.865e-01	minor_base=G	minor_cov=0/1	new_cov=40/33	polymorphism_frequency=9.865e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=40/34
RA	303	.	NC_000913	3449779	0	G	A	consensus_score=235.2	frequency=1	major_base=A	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	304	.	NC_000913	3468768	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=229.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/43	major_frequency=9.857e-01	minor_base=C	minor_cov=0/1	new_cov=26/43	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=26/44
RA	305	.	NC_000913	3474425	0	T	C	consensus_score=253.1	frequency=1	major_base=C	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	306	.	NC_000913	3543877	0	G	A	consensus_score=316.3	frequency=1	major_base=A	major_cov=45/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/48
RA	307	.	NC_000913	3560455	1	.	G	bias_e_value=3661170	bias_p_value=0.788764	consensus_score=295.5	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.956529	major_base=G	major_cov=35/45	major_frequency=9.877e-01	minor_base=.	minor_cov=1/0	new_cov=35/45	polymorphism_frequency=9.877e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/0	total_cov=36/45
RA	308	.	NC_000913	3623538	0	G	A	bias_e_value=0.428634	bias_p_value=9.23452e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.2	fisher_strand_p_value=4.57073e-09	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=41/23	major_frequency=7.191e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.809e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=41/23	total_cov=41/55
RA	309	.	NC_000913	3629921	0	C	T	consensus_score=200.2	frequency=1	major_base=T	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	310	.	NC_000913	3682515	0	C	T	consensus_score=246.7	frequency=1	major_base=T	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	311	.	NC_000913	3696909	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=409.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=58/58	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/58
RA	312	.	NC_000913	3707947	0	C	A	consensus_score=314.0	frequency=1	major_base=A	major_cov=60/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/33
RA	313	.	NC_000913	3725176	0	T	G	bias_e_value=4638420	bias_p_value=0.999303	consensus_score=260.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.96289	major_base=G	major_cov=41/30	major_frequency=9.726e-01	minor_base=C	minor_cov=1/1	new_cov=41/30	polymorphism_frequency=9.726e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	314	.	NC_000913	3761230	0	G	A	consensus_score=205.1	frequency=1	major_base=A	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	315	.	NC_000913	3771979	0	G	T	consensus_score=384.4	frequency=1	major_base=T	major_cov=49/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/61
RA	316	.	NC_000913	3815883	1	.	C	bias_e_value=1244880	bias_p_value=0.268198	consensus_score=283.9	fisher_strand_p_value=0.0745865	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/44	major_frequency=9.610e-01	minor_base=.	minor_cov=3/0	new_cov=30/44	polymorphism_frequency=9.610e-01	polymorphism_score=1.8	prediction=consensus	ref_cov=3/0	total_cov=34/44
RA	317	.	NC_000913	3823162	0	C	T	consensus_score=250.5	frequency=1	major_base=T	major_cov=24/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/53
RA	318	.	NC_000913	3869637	0	C	A	consensus_score=254.3	frequency=1	major_base=A	major_cov=25/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/43
RA	319	.	NC_000913	3878536	0	G	A	consensus_score=269.1	frequency=1	major_base=A	major_cov=20/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/53
RA	320	.	NC_000913	3883678	0	G	A	consensus_score=249.9	frequency=1	major_base=A	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	321	.	NC_000913	3911533	0	C	A	bias_e_value=0.00163121	bias_p_value=3.51429e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.1	fisher_strand_p_value=1.35019e-11	frequency=3.417e-01	ks_quality_p_value=1	major_base=C	major_cov=34/45	major_frequency=6.583e-01	minor_base=A	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=3.417e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=34/45	total_cov=75/45
RA	322	.	NC_000913	3912074	0	G	A	consensus_score=306.3	frequency=1	major_base=A	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	323	.	NC_000913	3931069	0	C	T	consensus_score=337.4	frequency=1	major_base=T	major_cov=41/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/57
RA	324	.	NC_000913	3946620	0	A	C	bias_e_value=4196700	bias_p_value=0.904139	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.5	fisher_strand_p_value=0.600056	frequency=2.022e-01	ks_quality_p_value=0.992276	major_base=A	major_cov=37/34	major_frequency=7.978e-01	minor_base=C	minor_cov=11/7	new_cov=11/7	polymorphism_frequency=2.022e-01	polymorphism_score=42.1	prediction=polymorphism	ref_cov=37/34	total_cov=49/41
RA	325	.	NC_000913	3955304	0	C	T	consensus_score=179.2	frequency=1	major_base=T	major_cov=18/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/39
RA	326	.	NC_000913	3988115	0	C	T	consensus_score=241.6	frequency=1	major_base=T	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	327	.	NC_000913	3993531	0	T	C	consensus_score=286.1	frequency=1	major_base=C	major_cov=49/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/27
RA	328	.	NC_000913	3996049	0	T	A	consensus_score=172.8	frequency=1	major_base=A	major_cov=19/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/31
RA	329	.	NC_000913	4011802	0	C	T	consensus_score=178.7	frequency=1	major_base=T	major_cov=16/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/36
RA	330	.	NC_000913	4084903	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=243.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=30/43	major_frequency=9.865e-01	minor_base=T	minor_cov=0/1	new_cov=30/43	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/44
RA	331	.	NC_000913	4092703	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=317.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=45/42	major_frequency=9.886e-01	minor_base=A	minor_cov=1/0	new_cov=45/42	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=46/42
RA	332	.	NC_000913	4124455	0	A	G	consensus_score=316.4	frequency=1	major_base=G	major_cov=40/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/46
RA	333	.	NC_000913	4166849	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.1	fisher_strand_p_value=1	frequency=6.098e-01	ks_quality_p_value=1	major_base=A	major_cov=13/12	major_frequency=6.098e-01	minor_base=G	minor_cov=8/8	new_cov=13/12	polymorphism_frequency=6.098e-01	polymorphism_score=42.3	prediction=polymorphism	ref_cov=8/8	total_cov=21/20
RA	334	.	NC_000913	4210041	0	G	A	consensus_score=149.5	frequency=1	major_base=A	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	335	.	NC_000913	4296380	1	.	C	bias_e_value=4637010	bias_p_value=0.999	consensus_score=183.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.955616	major_base=C	major_cov=32/24	major_frequency=9.492e-01	minor_base=T	minor_cov=2/1	new_cov=32/24	polymorphism_frequency=9.492e-01	polymorphism_score=1.5	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	336	.	NC_000913	4296380	2	.	G	consensus_score=198.9	frequency=1	major_base=G	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	337	.	NC_000913	4337390	0	C	T	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=465.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998108	major_base=T	major_cov=69/59	major_frequency=9.697e-01	minor_base=.	minor_cov=2/2	new_cov=69/59	polymorphism_frequency=9.697e-01	polymorphism_score=8.0	prediction=consensus	ref_cov=0/0	total_cov=71/61
RA	338	.	NC_000913	4338916	0	C	T	consensus_score=271.6	frequency=1	major_base=T	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	339	.	NC_000913	4349993	0	C	T	consensus_score=286.8	frequency=1	major_base=T	major_cov=48/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/34
RA	340	.	NC_000913	4352343	0	G	A	bias_e_value=7026.15	bias_p_value=0.00151372	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.9	fisher_strand_p_value=0.000154891	frequency=2.028e-01	ks_quality_p_value=1	major_base=G	major_cov=35/79	major_frequency=7.972e-01	minor_base=A	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.028e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=35/79	total_cov=35/109
RA	341	.	NC_000913	4375354	0	G	A	consensus_score=245.1	frequency=1	major_base=A	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	342	.	NC_000913	4380367	0	C	T	consensus_score=256.3	frequency=1	major_base=T	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	343	.	NC_000913	4425688	0	C	A	consensus_score=272.5	frequency=1	major_base=A	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	344	.	NC_000913	4425696	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=265.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/40	major_frequency=9.865e-01	minor_base=C	minor_cov=0/1	new_cov=33/40	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/41
RA	345	.	NC_000913	4436956	0	C	T	consensus_score=195.2	frequency=1	major_base=T	major_cov=27/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	346	.	NC_000913	4436957	0	C	T	consensus_score=192.6	frequency=1	major_base=T	major_cov=27/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	347	.	NC_000913	4532409	0	T	G	consensus_score=267.4	frequency=1	major_base=G	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	348	.	NC_000913	4546601	0	C	T	consensus_score=403.2	frequency=1	major_base=T	major_cov=51/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/69
RA	349	.	NC_000913	4578548	0	G	A	consensus_score=364.4	frequency=1	major_base=A	major_cov=55/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/49
RA	350	.	NC_000913	4585230	0	A	G	bias_e_value=1680660	bias_p_value=0.362081	consensus_score=223.8	fisher_strand_p_value=0.114241	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=32/30	major_frequency=9.394e-01	minor_base=T	minor_cov=0/4	new_cov=32/30	polymorphism_frequency=9.394e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
MC	351	.	NC_000913	62379	88274	0	0	left_inside_cov=0	left_outside_cov=45	right_inside_cov=0	right_outside_cov=45
MC	352	.	NC_000913	257908	258683	766	0	left_inside_cov=0	left_outside_cov=107	right_inside_cov=1	right_outside_cov=109
MC	353	.	NC_000913	339199	375417	0	0	left_inside_cov=0	left_outside_cov=75	right_inside_cov=0	right_outside_cov=75
MC	354	.	NC_000913	1196325	1211460	0	0	left_inside_cov=21	left_outside_cov=26	right_inside_cov=23	right_outside_cov=26
MC	355	.	NC_000913	1299499	1300697	1196	0	left_inside_cov=0	left_outside_cov=118	right_inside_cov=0	right_outside_cov=118
MC	356	.	NC_000913	1704350	1704739	0	0	left_inside_cov=0	left_outside_cov=107	right_inside_cov=1	right_outside_cov=108
MC	357	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=105	right_inside_cov=0	right_outside_cov=111
MC	358	.	NC_000913	2238416	2238434	0	0	left_inside_cov=0	left_outside_cov=104	right_inside_cov=0	right_outside_cov=104
MC	359	.	NC_000913	2259357	2262908	0	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=0	right_outside_cov=86
MC	360	.	NC_000913	3423839	3426667	395	2429	left_inside_cov=25	left_outside_cov=26	right_inside_cov=25	right_outside_cov=27
MC	361	.	NC_000913	3708463	3708634	0	0	left_inside_cov=24	left_outside_cov=28	right_inside_cov=25	right_outside_cov=49
MC	362	.	NC_000913	3762463	3765125	1611	1045	left_inside_cov=25	left_outside_cov=27	right_inside_cov=25	right_outside_cov=26
MC	363	.	NC_000913	4035361	4036918	367	1183	left_inside_cov=25	left_outside_cov=26	right_inside_cov=23	right_outside_cov=26
JC	364	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=77	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=297	max_left_minus=297	max_left_plus=286	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=148	max_min_right_minus=147	max_min_right_plus=148	max_pos_hash_score=590	max_right=289	max_right_minus=287	max_right_plus=289	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.78	new_junction_read_count=146	polymorphism_frequency=1.000e+00	pos_hash_score=81	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=141
JC	365	.	NC_000913	62378	-1	NC_000913	88275	1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=16	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__62378__-1__NC_000913__88275__1__0____300__300__0__0	max_left=277	max_left_minus=277	max_left_plus=260	max_min_left=147	max_min_left_minus=147	max_min_left_plus=133	max_min_right=146	max_min_right_minus=109	max_min_right_plus=146	max_pos_hash_score=590	max_right=295	max_right_minus=295	max_right_plus=273	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.55	new_junction_read_count=45	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=45
JC	366	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=40	coverage_plus=65	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=287	max_min_left=137	max_min_left_minus=86	max_min_left_plus=137	max_min_right=144	max_min_right_minus=143	max_min_right_plus=144	max_pos_hash_score=574	max_right=290	max_right_minus=290	max_right_plus=247	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.34	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=105
JC	367	.	NC_000913	257908	1	NC_000913	922386	-1	0	alignment_overlap=0	coverage_minus=46	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__257908__1__NC_000913__922386__-1__0____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=292	max_min_left=139	max_min_left_minus=139	max_min_left_plus=137	max_min_right=139	max_min_right_minus=139	max_min_right_plus=129	max_pos_hash_score=590	max_right=290	max_right_minus=290	max_right_plus=286	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.00	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	368	.	NC_000913	258675	-1	NC_000913	922378	1	0	alignment_overlap=1	coverage_minus=47	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__258675__-1__NC_000913__922377__1__1____300__300__1__0	max_left=290	max_left_minus=290	max_left_plus=278	max_min_left=141	max_min_left_minus=123	max_min_left_plus=141	max_min_right=147	max_min_right_minus=147	max_min_right_plus=124	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85
JC	369	.	NC_000913	339198	-1	NC_000913	375418	1	0	alignment_overlap=4	coverage_minus=33	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__339198__-1__NC_000913__375414__1__4____300__300__0__0	max_left=290	max_left_minus=281	max_left_plus=290	max_min_left=146	max_min_left_minus=133	max_min_left_plus=146	max_min_right=143	max_min_right_minus=143	max_min_right_plus=140	max_pos_hash_score=582	max_right=292	max_right_minus=244	max_right_plus=292	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=75	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	370	.	NC_000913	381260	1	NC_000913	789812	1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__381260__1__NC_000913__789812__1__0____300__300__1__0	max_left=297	max_left_minus=297	max_left_plus=296	max_min_left=147	max_min_left_minus=147	max_min_left_plus=114	max_min_right=147	max_min_right_minus=137	max_min_right_plus=147	max_pos_hash_score=590	max_right=294	max_right_minus=294	max_right_plus=287	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.90	new_junction_read_count=74	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	371	.	NC_000913	381260	1	NC_000913	1093485	-1	0	alignment_overlap=2	coverage_minus=66	coverage_plus=28	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__381260__1__NC_000913__1093487__-1__2____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=294	max_min_left=141	max_min_left_minus=141	max_min_left_plus=140	max_min_right=125	max_min_right_minus=125	max_min_right_plus=121	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=294	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.18	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=94
JC	372	.	NC_000913	382590	-1	NC_000913	789816	-1	0	alignment_overlap=2	coverage_minus=53	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__382590__-1__NC_000913__789818__-1__2____300__300__1__0	max_left=290	max_left_minus=282	max_left_plus=290	max_min_left=148	max_min_left_minus=140	max_min_left_plus=148	max_min_right=132	max_min_right_minus=128	max_min_right_plus=132	max_pos_hash_score=586	max_right=292	max_right_minus=290	max_right_plus=292	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.15	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	373	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.724e-01	junction_possible_overlap_registers=216	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=163	max_left_minus=149	max_left_plus=163	max_min_left=107	max_min_left_minus=107	max_min_left_plus=101	max_min_right=52	max_min_right_minus=52	max_min_right_plus=52	max_pos_hash_score=434	max_right=164	max_right_minus=164	max_right_plus=121	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.17	new_junction_read_count=10	polymorphism_frequency=1.724e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=8
JC	374	.	NC_000913	1069777	-1	NC_000913	1070265	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.542e-02	junction_possible_overlap_registers=286	key=NC_000913__1069777__-1__NC_000913__1070257__1__8____300__300__0__0	max_left=143	max_left_minus=143	max_left_plus=143	max_min_left=67	max_min_left_minus=67	max_min_left_plus=67	max_min_right=29	max_min_right_minus=29	max_min_right_plus=29	max_pos_hash_score=574	max_right=109	max_right_minus=109	max_right_plus=109	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.542e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=4
JC	375	.	NC_000913	1093481	1	NC_000913	1651548	-1	0	alignment_overlap=0	coverage_minus=48	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1093481__1__NC_000913__1651548__-1__0____300__300__0__1	max_left=294	max_left_minus=259	max_left_plus=294	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=149	max_min_right_minus=139	max_min_right_plus=149	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=263	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.08	new_junction_read_count=89	polymorphism_frequency=9.777e-01	pos_hash_score=52	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=89
JC	376	.	NC_000913	1166125	-1	NC_000913	1166621	1	0	alignment_overlap=15	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.118e-02	junction_possible_overlap_registers=279	key=NC_000913__1166125__-1__NC_000913__1166606__1__15____300__300__0__0	max_left=75	max_left_minus=75	max_left_plus=39	max_min_left=39	max_min_left_minus=0	max_min_left_plus=39	max_min_right=30	max_min_right_minus=30	max_min_right_plus=0	max_pos_hash_score=560	max_right=50	max_right_minus=30	max_right_plus=50	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.118e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=15	side_1_possible_overlap_registers=294	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=5
JC	377	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=6	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=1.500e-01	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=258	max_left_minus=258	max_left_plus=243	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=67	max_min_right_minus=67	max_min_right_plus=36	max_pos_hash_score=550	max_right=67	max_right_minus=67	max_right_plus=36	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=1.500e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=49	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=7
JC	378	.	NC_000913	1287248	-1	NC_000913	1287544	1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.079e-02	junction_possible_overlap_registers=293	key=NC_000913__1287248__-1__NC_000913__1287544__1__-1__A__300__300__0__0	max_left=213	max_left_minus=213	max_left_plus=213	max_min_left=123	max_min_left_minus=123	max_min_left_plus=123	max_min_right=132	max_min_right_minus=130	max_min_right_plus=132	max_pos_hash_score=588	max_right=166	max_right_minus=166	max_right_plus=166	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=8.079e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=A
JC	379	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=64	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=284	max_left_minus=284	max_left_plus=271	max_min_left=146	max_min_left_minus=127	max_min_left_plus=146	max_min_right=144	max_min_right_minus=115	max_min_right_plus=144	max_pos_hash_score=582	max_right=295	max_right_minus=292	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.46	new_junction_read_count=118	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=113
JC	380	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=51	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=294	max_left_minus=288	max_left_plus=294	max_min_left=133	max_min_left_minus=133	max_min_left_plus=129	max_min_right=139	max_min_right_minus=138	max_min_right_plus=139	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=291	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.28	new_junction_read_count=105	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104
JC	381	.	NC_000913	1651548	-1	NC_000913	1651855	-1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=25	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1651548__-1__NC_000913__1651855__-1__0____300__300__1__0	max_left=286	max_left_minus=271	max_left_plus=286	max_min_left=139	max_min_left_minus=139	max_min_left_plus=113	max_min_right=150	max_min_right_minus=114	max_min_right_plus=150	max_pos_hash_score=590	max_right=295	max_right_minus=295	max_right_plus=292	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.71	new_junction_read_count=58	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=58
JC	382	.	NC_000913	1651851	1	NC_000913	2070271	-1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=66	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1651851__1__NC_000913__2070271__-1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=292	max_min_left=137	max_min_left_minus=134	max_min_left_plus=137	max_min_right=148	max_min_right_minus=148	max_min_right_plus=145	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=296	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.33	new_junction_read_count=109	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=109
JC	383	.	NC_000913	1704349	-1	NC_000913	1704740	1	0	alignment_overlap=2	coverage_minus=56	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1704349__-1__NC_000913__1704738__1__2____300__300__0__0	max_left=294	max_left_minus=268	max_left_plus=294	max_min_left=148	max_min_left_minus=139	max_min_left_plus=148	max_min_right=145	max_min_right_minus=145	max_min_right_plus=136	max_pos_hash_score=586	max_right=295	max_right_minus=292	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.31	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=105
JC	384	.	NC_000913	1918928	-1	NC_000913	1919349	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.327e-02	junction_possible_overlap_registers=281	key=NC_000913__1918928__-1__NC_000913__1919336__1__13____300__300__0__0	max_left=148	max_left_minus=148	max_left_plus=145	max_min_left=13	max_min_left_minus=13	max_min_left_plus=0	max_min_right=77	max_min_right_minus=77	max_min_right_plus=77	max_pos_hash_score=564	max_right=272	max_right_minus=272	max_right_plus=77	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.327e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=13	side_1_possible_overlap_registers=294	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	385	.	NC_000913	1979270	-1	NC_000913	4289456	-1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=32	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979270__-1__NC_000913__4289456__-1__0____300__300__1__0	max_left=294	max_left_minus=278	max_left_plus=294	max_min_left=148	max_min_left_minus=148	max_min_left_plus=140	max_min_right=145	max_min_right_minus=141	max_min_right_plus=145	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=295	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.97	new_junction_read_count=80	polymorphism_frequency=9.873e-01	pos_hash_score=51	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=75
JC	386	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=299	max_left_minus=294	max_left_plus=299	max_min_left=145	max_min_left_minus=141	max_min_left_plus=145	max_min_right=145	max_min_right_minus=145	max_min_right_plus=134	max_pos_hash_score=590	max_right=299	max_right_minus=299	max_right_plus=292	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.35	new_junction_read_count=111	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=107
JC	387	.	NC_000913	2068941	1	NC_000913	2317414	1	0	alignment_overlap=0	coverage_minus=35	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2068941__1__NC_000913__2317414__1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=288	max_min_left=149	max_min_left_minus=149	max_min_left_plus=128	max_min_right=140	max_min_right_minus=140	max_min_right_plus=135	max_pos_hash_score=590	max_right=284	max_right_minus=284	max_right_plus=270	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74
JC	388	.	NC_000913	2238415	-1	NC_000913	2238435	1	0	alignment_overlap=0	coverage_minus=56	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2238415__-1__NC_000913__2238435__1__0____300__300__0__0	max_left=299	max_left_minus=299	max_left_plus=292	max_min_left=149	max_min_left_minus=137	max_min_left_plus=149	max_min_right=149	max_min_right_minus=149	max_min_right_plus=144	max_pos_hash_score=590	max_right=299	max_right_minus=299	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102
JC	389	.	NC_000913	2259356	-1	NC_000913	2262909	1	0	alignment_overlap=1	coverage_minus=40	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2259356__-1__NC_000913__2262908__1__1____300__300__0__0	max_left=294	max_left_minus=287	max_left_plus=294	max_min_left=147	max_min_left_minus=124	max_min_left_plus=147	max_min_right=147	max_min_right_minus=147	max_min_right_plus=147	max_pos_hash_score=588	max_right=295	max_right_minus=292	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.05	new_junction_read_count=86	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	390	.	NC_000913	2317418	-1	NC_000913	2997691	-1	0	alignment_overlap=1	coverage_minus=31	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2317419__-1__NC_000913__2997691__-1__1____300__300__0__1	max_left=293	max_left_minus=291	max_left_plus=293	max_min_left=144	max_min_left_minus=144	max_min_left_plus=142	max_min_right=149	max_min_right_minus=149	max_min_right_plus=134	max_pos_hash_score=588	max_right=291	max_right_minus=287	max_right_plus=291	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=88
JC	391	.	NC_000913	2518116	-1	NC_000913	2518232	1	0	alignment_overlap=81	coverage_minus=6	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.364e-01	junction_possible_overlap_registers=213	key=NC_000913__2518116__-1__NC_000913__2518151__1__81____300__300__0__0	max_left=211	max_left_minus=211	max_left_plus=94	max_min_left=94	max_min_left_minus=69	max_min_left_plus=94	max_min_right=89	max_min_right_minus=89	max_min_right_plus=0	max_pos_hash_score=428	max_right=209	max_right_minus=159	max_right_plus=209	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.13	new_junction_read_count=8	polymorphism_frequency=1.364e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=81	side_1_possible_overlap_registers=294	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=8
JC	392	.	NC_000913	2653393	-1	NC_000913	2653720	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.127e-02	junction_possible_overlap_registers=291	key=NC_000913__2653393__-1__NC_000913__2653717__1__3____300__300__0__0	max_left=182	max_left_minus=182	max_left_plus=182	max_min_left=78	max_min_left_minus=78	max_min_left_plus=51	max_min_right=130	max_min_right_minus=130	max_min_right_plus=130	max_pos_hash_score=584	max_right=246	max_right_minus=219	max_right_plus=246	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=7.127e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=3	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=6
JC	393	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.104e-02	junction_possible_overlap_registers=269	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=150	max_left_minus=150	max_left_plus=129	max_min_left=129	max_min_left_minus=0	max_min_left_plus=129	max_min_right=124	max_min_right_minus=124	max_min_right_plus=0	max_pos_hash_score=540	max_right=146	max_right_minus=124	max_right_plus=146	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=8.104e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=6
JC	394	.	NC_000913	2878076	-1	NC_000913	2878324	1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.190e-01	junction_possible_overlap_registers=293	key=NC_000913__2878076__-1__NC_000913__2878324__1__-1__T__300__300__0__0	max_left=295	max_left_minus=289	max_left_plus=295	max_min_left=76	max_min_left_minus=0	max_min_left_plus=76	max_min_right=98	max_min_right_minus=98	max_min_right_plus=4	max_pos_hash_score=588	max_right=277	max_right_minus=98	max_right_plus=277	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=1.190e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.38	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=T
JC	395	.	NC_000913	2913392	1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1	max_left=295	max_left_minus=290	max_left_plus=295	max_min_left=144	max_min_left_minus=139	max_min_left_plus=144	max_min_right=144	max_min_right_minus=144	max_min_right_plus=143	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=293	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.02	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=83
JC	396	.	NC_000913	2913396	-1	NC_000913	2996361	1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1	max_left=295	max_left_minus=295	max_left_plus=290	max_min_left=148	max_min_left_minus=148	max_min_left_plus=114	max_min_right=144	max_min_right_minus=144	max_min_right_plus=139	max_pos_hash_score=590	max_right=289	max_right_minus=289	max_right_plus=276	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=90
JC	397	.	NC_000913	3191802	-1	NC_000913	3192038	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.956e-02	junction_possible_overlap_registers=283	key=NC_000913__3191802__-1__NC_000913__3192027__1__11____300__300__0__0	max_left=106	max_left_minus=106	max_left_plus=106	max_min_left=106	max_min_left_minus=106	max_min_left_plus=106	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=568	max_right=241	max_right_minus=241	max_right_plus=175	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.956e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.52	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=120	side_2_redundant=0	total_non_overlap_reads=3
JC	398	.	NC_000913	3409280	-1	NC_000913	3409752	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.551e-02	junction_possible_overlap_registers=283	key=NC_000913__3409280__-1__NC_000913__3409741__1__11____300__300__0__0	max_left=83	max_left_minus=83	max_left_plus=34	max_min_left=34	max_min_left_minus=34	max_min_left_plus=34	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_pos_hash_score=568	max_right=35	max_right_minus=35	max_right_plus=35	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.551e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=3
JC	399	.	NC_000913	3584195	-1	NC_000913	4289448	1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=32	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3584195__-1__NC_000913__4289448__1__0____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=272	max_min_left=139	max_min_left_minus=139	max_min_left_plus=132	max_min_right=149	max_min_right_minus=149	max_min_right_plus=147	max_pos_hash_score=590	max_right=295	max_right_minus=295	max_right_plus=267	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.85	new_junction_read_count=70	polymorphism_frequency=9.855e-01	pos_hash_score=50	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=70
JC	400	.	NC_000913	3708466	-1	NC_000913	3708635	1	0	alignment_overlap=108	coverage_minus=10	coverage_plus=13	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=186	key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0	max_left=161	max_left_minus=139	max_left_plus=161	max_min_left=89	max_min_left_minus=89	max_min_left_plus=73	max_min_right=92	max_min_right_minus=63	max_min_right_plus=92	max_pos_hash_score=374	max_right=189	max_right_minus=184	max_right_plus=189	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.46	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=108	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=186	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	401	.	NC_000913	3822646	1	NC_000913	3822651	-1	0	alignment_overlap=0	coverage_minus=27	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0	max_left=296	max_left_minus=275	max_left_plus=296	max_min_left=148	max_min_left_minus=148	max_min_left_plus=144	max_min_right=147	max_min_right_minus=145	max_min_right_plus=147	max_pos_hash_score=590	max_right=296	max_right_minus=289	max_right_plus=296	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.85	new_junction_read_count=70	polymorphism_frequency=9.722e-01	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=68
JC	402	.	NC_000913	3938983	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3938983__1__NC_000913__4498181__1__0____300__300__0__1	max_left=299	max_left_minus=295	max_left_plus=299	max_min_left=137	max_min_left_minus=136	max_min_left_plus=137	max_min_right=137	max_min_right_minus=128	max_min_right_plus=137	max_pos_hash_score=590	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.00	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=81
JC	403	.	NC_000913	3938987	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=57	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3938987__-1__NC_000913__4499511__-1__0____300__300__0__1	max_left=295	max_left_minus=293	max_left_plus=295	max_min_left=148	max_min_left_minus=148	max_min_left_plus=147	max_min_right=149	max_min_right_minus=147	max_min_right_plus=149	max_pos_hash_score=590	max_right=289	max_right_minus=289	max_right_plus=263	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.33	new_junction_read_count=109	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=108
JC	404	.	NC_000913	4094319	-1	NC_000913	4094689	1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.245e-02	junction_possible_overlap_registers=293	key=NC_000913__4094319__-1__NC_000913__4094689__1__-1__C__300__300__0__0	max_left=149	max_left_minus=149	max_left_plus=116	max_min_left=124	max_min_left_minus=124	max_min_left_plus=116	max_min_right=141	max_min_right_minus=141	max_min_right_plus=0	max_pos_hash_score=588	max_right=230	max_right_minus=175	max_right_plus=230	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=8.245e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=C
JC	405	.	NC_000913	4226134	-1	NC_000913	4226429	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.770e-02	junction_possible_overlap_registers=281	key=NC_000913__4226134__-1__NC_000913__4226416__1__13____300__300__0__0	max_left=264	max_left_minus=264	max_left_plus=178	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=109	max_min_right_minus=81	max_min_right_plus=109	max_pos_hash_score=564	max_right=109	max_right_minus=81	max_right_plus=109	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.770e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=13	side_1_possible_overlap_registers=294	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=3
JC	406	.	NC_000913	4235952	-1	NC_000913	4236085	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.794e-02	junction_possible_overlap_registers=283	key=NC_000913__4235952__-1__NC_000913__4236074__1__11____300__300__0__0	max_left=227	max_left_minus=112	max_left_plus=227	max_min_left=112	max_min_left_minus=112	max_min_left_plus=0	max_min_right=115	max_min_right_minus=0	max_min_right_plus=115	max_pos_hash_score=568	max_right=176	max_right_minus=176	max_right_plus=115	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.794e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=3
JC	407	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=7	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=2.089e-01	junction_possible_overlap_registers=205	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=197	max_left_minus=197	max_left_plus=167	max_min_left=75	max_min_left_minus=75	max_min_left_plus=73	max_min_right=95	max_min_right_minus=95	max_min_right_plus=95	max_pos_hash_score=412	max_right=210	max_right_minus=141	max_right_plus=210	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.28	new_junction_read_count=16	polymorphism_frequency=2.089e-01	pos_hash_score=14	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=89	side_1_possible_overlap_registers=294	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=16
UN	408	.	NC_000913	15642	16452
UN	409	.	NC_000913	16454	16456
UN	410	.	NC_000913	20061	20285
UN	411	.	NC_000913	62379	88274
UN	412	.	NC_000913	224004	224004
UN	413	.	NC_000913	224006	224006
UN	414	.	NC_000913	224008	224495
UN	415	.	NC_000913	224508	224508
UN	416	.	NC_000913	225164	225323
UN	417	.	NC_000913	225325	225325
UN	418	.	NC_000913	227274	228403
UN	419	.	NC_000913	257908	258683
UN	420	.	NC_000913	270795	271011
UN	421	.	NC_000913	274240	274240
UN	422	.	NC_000913	274245	274865
UN	423	.	NC_000913	274869	274869
UN	424	.	NC_000913	279422	279657
UN	425	.	NC_000913	290918	291141
UN	426	.	NC_000913	315510	315512
UN	427	.	NC_000913	315514	316228
UN	428	.	NC_000913	316230	316231
UN	429	.	NC_000913	339199	375417
UN	430	.	NC_000913	381539	381539
UN	431	.	NC_000913	381548	382335
UN	432	.	NC_000913	391982	392697
UN	433	.	NC_000913	392699	392700
UN	434	.	NC_000913	392702	392702
UN	435	.	NC_000913	526061	526061
UN	436	.	NC_000913	526066	526066
UN	437	.	NC_000913	526070	526481
UN	438	.	NC_000913	567034	567034
UN	439	.	NC_000913	567040	567040
UN	440	.	NC_000913	567043	567755
UN	441	.	NC_000913	567760	567764
UN	442	.	NC_000913	574863	575505
UN	443	.	NC_000913	608278	608278
UN	444	.	NC_000913	608280	608281
UN	445	.	NC_000913	608284	609084
UN	446	.	NC_000913	688129	688129
UN	447	.	NC_000913	688131	688767
UN	448	.	NC_000913	688769	688771
UN	449	.	NC_000913	688773	688774
UN	450	.	NC_000913	688778	688778
UN	451	.	NC_000913	688781	688782
UN	452	.	NC_000913	688785	688785
UN	453	.	NC_000913	1094512	1094512
UN	454	.	NC_000913	1094518	1095225
UN	455	.	NC_000913	1196374	1211413
UN	456	.	NC_000913	1299499	1300697
UN	457	.	NC_000913	1396319	1396319
UN	458	.	NC_000913	1396322	1396968
UN	459	.	NC_000913	1396975	1396975
UN	460	.	NC_000913	1468165	1468954
UN	461	.	NC_000913	1469550	1470234
UN	462	.	NC_000913	1528525	1528894
UN	463	.	NC_000913	1528896	1528896
UN	464	.	NC_000913	1528902	1528902
UN	465	.	NC_000913	1651123	1651273
UN	466	.	NC_000913	1704350	1704739
UN	467	.	NC_000913	1978495	1979270
UN	468	.	NC_000913	2067008	2067042
UN	469	.	NC_000913	2067044	2067047
UN	470	.	NC_000913	2069211	2070008
UN	471	.	NC_000913	2102011	2102663
UN	472	.	NC_000913	2170441	2170441
UN	473	.	NC_000913	2170443	2170443
UN	474	.	NC_000913	2170445	2170445
UN	475	.	NC_000913	2170448	2171166
UN	476	.	NC_000913	2171168	2171169
UN	477	.	NC_000913	2171171	2171171
UN	478	.	NC_000913	2238416	2238434
UN	479	.	NC_000913	2259357	2262908
UN	480	.	NC_000913	2289189	2289826
UN	481	.	NC_000913	2514533	2514533
UN	482	.	NC_000913	2514536	2515351
UN	483	.	NC_000913	2726323	2729012
UN	484	.	NC_000913	2729820	2730693
UN	485	.	NC_000913	2996616	2997430
UN	486	.	NC_000913	2997432	2997433
UN	487	.	NC_000913	2997436	2997437
UN	488	.	NC_000913	3130426	3131073
UN	489	.	NC_000913	3186359	3186359
UN	490	.	NC_000913	3186382	3187148
UN	491	.	NC_000913	3187154	3187154
UN	492	.	NC_000913	3365828	3366472
UN	493	.	NC_000913	3423918	3426613
UN	494	.	NC_000913	3427208	3428294
UN	495	.	NC_000913	3470435	3470449
UN	496	.	NC_000913	3583701	3583910
UN	497	.	NC_000913	3619531	3619531
UN	498	.	NC_000913	3619535	3619535
UN	499	.	NC_000913	3619537	3620802
UN	500	.	NC_000913	3621357	3621358
UN	501	.	NC_000913	3621360	3622066
UN	502	.	NC_000913	3652287	3652287
UN	503	.	NC_000913	3652289	3652289
UN	504	.	NC_000913	3652292	3652953
UN	505	.	NC_000913	3708467	3708551
UN	506	.	NC_000913	3762535	3762535
UN	507	.	NC_000913	3762538	3765058
UN	508	.	NC_000913	3942295	3943136
UN	509	.	NC_000913	3944326	3945291
UN	510	.	NC_000913	3945293	3945293
UN	511	.	NC_000913	4035423	4035423
UN	512	.	NC_000913	4035428	4036836
UN	513	.	NC_000913	4036841	4036841
UN	514	.	NC_000913	4038104	4038403
UN	515	.	NC_000913	4038408	4038408
UN	516	.	NC_000913	4038994	4039109
UN	517	.	NC_000913	4039674	4040368
UN	518	.	NC_000913	4166573	4166573
UN	519	.	NC_000913	4166849	4166849
UN	520	.	NC_000913	4166919	4167972
UN	521	.	NC_000913	4168798	4168802
UN	522	.	NC_000913	4168805	4171379
UN	523	.	NC_000913	4171415	4171415
UN	524	.	NC_000913	4176790	4176851
UN	525	.	NC_000913	4208362	4208366
UN	526	.	NC_000913	4208369	4208370
UN	527	.	NC_000913	4208372	4208378
UN	528	.	NC_000913	4208380	4209475
UN	529	.	NC_000913	4209479	4209479
UN	530	.	NC_000913	4210254	4210254
UN	531	.	NC_000913	4210266	4210266
UN	532	.	NC_000913	4210276	4212838
UN	533	.	NC_000913	4498446	4499256
UN	534	.	NC_000913	4507743	4507744
UN	535	.	NC_000913	4507747	4508412
UN	536	.	NC_000913	4508414	4508414
UN	537	.	NC_000913	4508417	4508419
UN	538	.	NC_000913	4508421	4508422
UN	539	.	NC_000913	4508424	4508425