#=GENOME_DIFF	1.0
#=CREATED	00:57:01 11 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9645_S38_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9645_S38_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9645_S38_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9645_S38_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9645_S38_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	497753574
#=CONVERTED-READS	1690022
#=INPUT-BASES	497862339
#=INPUT-READS	1690394
#=MAPPED-BASES	447806516
#=MAPPED-READS	1520272
MOB	1	557,558	NC_000913	16974	IS150	-1	3
SNP	2	262	NC_000913	23501	T
SNP	3	263	NC_000913	31683	T
SNP	4	264	NC_000913	42108	A
SNP	5	265	NC_000913	59968	T
SNP	6	266	NC_000913	88571	A
SNP	7	267	NC_000913	103343	T
SNP	8	269	NC_000913	246747	T
DEL	9	547,560	NC_000913	257908	776
SNP	10	270	NC_000913	284535	G
SNP	11	271	NC_000913	313543	A
SNP	12	272	NC_000913	363282	T
SNP	13	273	NC_000913	366257	G
SNP	14	275	NC_000913	367186	T
SNP	15	276	NC_000913	367573	A
MOB	16	567,568	NC_000913	458790	IS186	-1	6	del_end=1
SNP	17	281	NC_000913	466148	A
SNP	18	282	NC_000913	469271	A
SUB	19	283,284	NC_000913	480295	2	AA
SNP	20	285	NC_000913	502232	A
SNP	21	286	NC_000913	579042	G
SNP	22	288	NC_000913	662269	T
SNP	23	289	NC_000913	696470	T
SNP	24	291	NC_000913	784677	A
SNP	25	293	NC_000913	968837	A
SNP	26	294	NC_000913	1040126	T
SNP	27	295	NC_000913	1061935	A
SNP	28	296	NC_000913	1069743	T
SNP	29	297	NC_000913	1098620	A
SUB	30	298,299	NC_000913	1111727	2	TT
SNP	31	300	NC_000913	1156913	A
SNP	32	301	NC_000913	1169836	G
SNP	33	302	NC_000913	1189980	G
SNP	34	303	NC_000913	1196220	T
SNP	35	304	NC_000913	1196232	T
SNP	36	305	NC_000913	1196245	C
SNP	37	306	NC_000913	1196247	G
SNP	38	307	NC_000913	1196277	T
SNP	39	308	NC_000913	1196280	C
SNP	40	309	NC_000913	1196283	G
SNP	41	310	NC_000913	1196292	T
SNP	42	311	NC_000913	1196304	A
DEL	43	551,577	NC_000913	1299499	1199
SNP	44	318	NC_000913	1301992	T
DEL	45	319	NC_000913	1302454	1
SNP	46	320	NC_000913	1306736	G
SNP	47	321	NC_000913	1310770	G
SNP	48	322	NC_000913	1322759	A
SNP	49	323	NC_000913	1337394	G
SNP	50	324	NC_000913	1357202	T
SNP	51	325	NC_000913	1358859	C
DEL	52	552,579	NC_000913	1367750	176
MOB	53	581,582	NC_000913	1399590	IS5	1	4
SNP	54	326	NC_000913	1401893	A
SNP	55	327	NC_000913	1453992	A
SNP	56	331	NC_000913	1597364	C
SNP	57	332	NC_000913	1643679	T
SNP	58	333	NC_000913	1652331	C
INS	59	583	NC_000913	1679563	TATCACGTTTTAATCACTGGATATCGATGGAAA	repeat_length=33	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=TATCACGTTTTAATCACTGGATATCGATGGAAA
SNP	60	334	NC_000913	1721136	T
SNP	61	336	NC_000913	1776100	A
SNP	62	337	NC_000913	1776715	T
SNP	63	338	NC_000913	1894839	C
SNP	64	339	NC_000913	1955010	A
DEL	65	553,584	NC_000913	1978503	776
SNP	66	340	NC_000913	1994637	G
SNP	67	341	NC_000913	2040433	A
SNP	68	342	NC_000913	2041411	A
SNP	69	343	NC_000913	2046506	T
SNP	70	344	NC_000913	2085319	A
SNP	71	345	NC_000913	2086634	A
SNP	72	346	NC_000913	2103891	A
DEL	73	347	NC_000913	2111259	1
SNP	74	348	NC_000913	2122908	A
SNP	75	349	NC_000913	2134498	A
SNP	76	350	NC_000913	2137543	A
DEL	77	353,354	NC_000913	2173363	2
SNP	78	355	NC_000913	2173448	T
MOB	79	586,587	NC_000913	2174359	IS5	1	4
SNP	80	356	NC_000913	2188087	C
SUB	81	357,358	NC_000913	2304522	2	TC
SNP	82	359	NC_000913	2304537	G
SNP	83	360	NC_000913	2304540	T
SNP	84	361	NC_000913	2304549	T
SNP	85	362	NC_000913	2304567	T
SNP	86	363	NC_000913	2304575	A
SNP	87	364	NC_000913	2329209	G
SNP	88	365	NC_000913	2339162	T
MOB	89	588,590	NC_000913	2378926	IS5	-1	4
SNP	90	366	NC_000913	2384808	T
SNP	91	367	NC_000913	2410419	A
SNP	92	370	NC_000913	2484827	T
SNP	93	371	NC_000913	2510609	T
MOB	94	592,593	NC_000913	2536312	IS186	-1	6	del_end=1	del_start=1
DEL	95	554,595	NC_000913	2558699	6790
SNP	96	372	NC_000913	2587112	T
SNP	97	373	NC_000913	2732992	A
SNP	98	374	NC_000913	2823537	G
SNP	99	375	NC_000913	2856243	G
SNP	100	376	NC_000913	2867454	A
SNP	101	377	NC_000913	2871153	G
SUB	102	378,379	NC_000913	2926543	2	TT
SNP	103	380	NC_000913	2926772	A
MOB	104	589,598	NC_000913	2993231	IS5	-1	4
SNP	105	382	NC_000913	3028546	A
SNP	106	383	NC_000913	3050472	A
SNP	107	386	NC_000913	3061916	T
SNP	108	387	NC_000913	3065449	A
SNP	109	388	NC_000913	3065861	A
SNP	110	389	NC_000913	3089260	C
SNP	111	390	NC_000913	3090968	A
SNP	112	391	NC_000913	3104887	A
SNP	113	392	NC_000913	3120786	A
SNP	114	393	NC_000913	3121033	C
SNP	115	394	NC_000913	3127981	A
SNP	116	395	NC_000913	3130161	A
SNP	117	396	NC_000913	3132077	A
SNP	118	397	NC_000913	3133175	A
SNP	119	398	NC_000913	3134263	A
SNP	120	399	NC_000913	3145944	A
SNP	121	400	NC_000913	3150316	A
SNP	122	401	NC_000913	3162216	A
SNP	123	402	NC_000913	3176625	A
SNP	124	403	NC_000913	3179383	A
SNP	125	404	NC_000913	3186297	A
SNP	126	405	NC_000913	3193351	A
SNP	127	406	NC_000913	3204617	A
DEL	128	407	NC_000913	3207549	1
SNP	129	408	NC_000913	3219128	A
SNP	130	409	NC_000913	3224895	T
SNP	131	410	NC_000913	3227339	T
SNP	132	411	NC_000913	3240423	T
SNP	133	412	NC_000913	3256157	T
SNP	134	413	NC_000913	3259283	A
SNP	135	415	NC_000913	3270497	T
SNP	136	416	NC_000913	3275902	T
SNP	137	417	NC_000913	3292312	T
SNP	138	418	NC_000913	3304647	C
SNP	139	419	NC_000913	3329743	T
MOB	140	599,600	NC_000913	3368685	IS2	-1	5
SNP	141	420	NC_000913	3377240	G
SNP	142	421	NC_000913	3388041	G
SNP	143	423	NC_000913	3506393	C
SNP	144	424	NC_000913	3524184	T
SNP	145	426	NC_000913	3558291	T
SNP	146	427	NC_000913	3559621	T
SNP	147	428	NC_000913	3560119	G
INS	148	429	NC_000913	3560455	G
SNP	149	430	NC_000913	3579050	A
SNP	150	431	NC_000913	3581316	A
SNP	151	432	NC_000913	3581850	A
SNP	152	433	NC_000913	3583969	A
SNP	153	434	NC_000913	3585517	A
SNP	154	435	NC_000913	3587531	A
SNP	155	436	NC_000913	3588787	A
SNP	156	437	NC_000913	3589956	A
SNP	157	438	NC_000913	3621090	T
SNP	158	439	NC_000913	3647677	T
SNP	159	440	NC_000913	3692288	T
SNP	160	441	NC_000913	3695455	G
SNP	161	442	NC_000913	3707947	A
SNP	162	443	NC_000913	3725176	G
INS	163	445	NC_000913	3815883	C
SNP	164	446	NC_000913	3827026	T
SNP	165	449	NC_000913	3927292	C
SNP	166	450	NC_000913	3937909	A
SNP	167	451	NC_000913	3937997	A
DEL	168	452	NC_000913	3938441	1
SNP	169	453	NC_000913	3941874	T
SNP	170	454	NC_000913	3946246	A
SNP	171	455	NC_000913	3950099	T
SNP	172	456	NC_000913	3956003	A
SNP	173	457	NC_000913	4040623	A
SNP	174	458	NC_000913	4084932	T
SNP	175	459	NC_000913	4139298	A
SNP	176	460	NC_000913	4142335	T
SNP	177	461	NC_000913	4160157	A
SNP	178	463	NC_000913	4171728	T
SNP	179	464	NC_000913	4171781	G
SNP	180	465	NC_000913	4175827	T
SNP	181	466	NC_000913	4178883	T
SNP	182	467	NC_000913	4179001	T
SNP	183	468	NC_000913	4185777	T
SNP	184	469	NC_000913	4193177	T
SNP	185	470	NC_000913	4193820	T
SNP	186	471	NC_000913	4219752	T
SNP	187	472	NC_000913	4222743	T
SNP	188	473	NC_000913	4223638	C
SNP	189	474	NC_000913	4224483	T
SNP	190	475	NC_000913	4234479	T
SNP	191	476	NC_000913	4249684	T
SNP	192	477	NC_000913	4265668	T
SNP	193	478	NC_000913	4269449	T
SNP	194	479	NC_000913	4271130	T
SNP	195	480	NC_000913	4278488	T
SNP	196	481	NC_000913	4282536	T
SNP	197	482	NC_000913	4284077	T
SNP	198	483	NC_000913	4286033	T
SNP	199	484	NC_000913	4296187	T
SNP	200	486	NC_000913	4296300	T
INS	201	487,488	NC_000913	4296381	GC
SNP	202	489	NC_000913	4297469	T
SNP	203	490	NC_000913	4298199	T
SNP	204	491	NC_000913	4301071	T
SNP	205	492	NC_000913	4303755	T
SNP	206	493	NC_000913	4311337	T
SNP	207	494	NC_000913	4320079	T
SNP	208	495	NC_000913	4320785	T
SNP	209	496	NC_000913	4322605	T
SNP	210	497	NC_000913	4325644	T
SNP	211	498	NC_000913	4325837	T
SNP	212	499	NC_000913	4332310	T
SNP	213	500	NC_000913	4337864	T
SNP	214	501	NC_000913	4342825	T
SNP	215	502	NC_000913	4349259	T
SNP	216	503	NC_000913	4351519	T
SNP	217	504	NC_000913	4351590	T
SNP	218	505	NC_000913	4359909	T
SNP	219	506	NC_000913	4364798	T
SNP	220	507	NC_000913	4366668	T
SNP	221	508	NC_000913	4371401	T
SNP	222	509	NC_000913	4373421	T
SNP	223	510	NC_000913	4380469	T
SNP	224	511	NC_000913	4388120	T
SNP	225	512	NC_000913	4389838	T
SNP	226	513	NC_000913	4401607	T
SNP	227	514	NC_000913	4403010	T
SNP	228	515	NC_000913	4407045	T
SNP	229	516	NC_000913	4414625	T
SNP	230	517	NC_000913	4418862	T
SNP	231	518	NC_000913	4426929	T
SNP	232	519	NC_000913	4430010	G
SNP	233	520	NC_000913	4433459	T
MOB	234	585,602	NC_000913	4434629	IS1	-1	8
SNP	235	521	NC_000913	4435124	T
SNP	236	522	NC_000913	4435750	T
SNP	237	523	NC_000913	4451280	T
SNP	238	524	NC_000913	4457392	T
SNP	239	525	NC_000913	4482901	T
SNP	240	526	NC_000913	4486869	A
SNP	241	527	NC_000913	4487022	T
SNP	242	528	NC_000913	4489775	T
SNP	243	529	NC_000913	4494499	T
SNP	244	530	NC_000913	4501500	T
SNP	245	531	NC_000913	4510238	G
SNP	246	532	NC_000913	4517355	T
SNP	247	533	NC_000913	4524401	T
SNP	248	534	NC_000913	4524596	T
SNP	249	535	NC_000913	4529039	T
SNP	250	536	NC_000913	4530797	T
SNP	251	537	NC_000913	4541261	T
MOB	252	603,604	NC_000913	4542042	IS1	1	8
SNP	253	538	NC_000913	4553671	T
SNP	254	539	NC_000913	4564385	T
SNP	255	540	NC_000913	4570550	T
SNP	256	541	NC_000913	4571280	T
SNP	257	542	NC_000913	4585673	T
SNP	258	543	NC_000913	4587365	T
SNP	259	544	NC_000913	4604517	T
SNP	260	545	NC_000913	4636925	C
SNP	261	546	NC_000913	4638240	A
RA	262	.	NC_000913	23501	0	C	T	consensus_score=228.4	frequency=1	major_base=T	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	263	.	NC_000913	31683	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=289.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/44	major_frequency=9.885e-01	minor_base=G	minor_cov=0/1	new_cov=42/44	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	264	.	NC_000913	42108	0	G	A	consensus_score=539.9	frequency=1	major_base=A	major_cov=96/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=96/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=96/68
RA	265	.	NC_000913	59968	0	C	T	consensus_score=265.6	frequency=1	major_base=T	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	266	.	NC_000913	88571	0	G	A	consensus_score=322.8	frequency=1	major_base=A	major_cov=52/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	267	.	NC_000913	103343	0	C	T	consensus_score=266.4	frequency=1	major_base=T	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	268	.	NC_000913	228689	0	T	.	bias_e_value=19252.7	bias_p_value=0.0041478	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.5	fisher_strand_p_value=0.000542495	frequency=2.266e-01	ks_quality_p_value=0.884748	major_base=T	major_cov=54/45	major_frequency=7.734e-01	minor_base=.	minor_cov=5/24	new_cov=5/24	polymorphism_frequency=2.266e-01	polymorphism_score=120.1	prediction=polymorphism	ref_cov=54/45	total_cov=59/69
RA	269	.	NC_000913	246747	0	G	T	consensus_score=671.2	frequency=1	major_base=T	major_cov=96/96	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=96/96	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=96/96
RA	270	.	NC_000913	284535	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=189.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=23/30	major_frequency=9.815e-01	minor_base=A	minor_cov=0/1	new_cov=23/30	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	271	.	NC_000913	313543	0	G	A	consensus_score=385.4	frequency=1	major_base=A	major_cov=70/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/49
RA	272	.	NC_000913	363282	0	G	T	bias_e_value=646356	bias_p_value=0.139251	consensus_score=6068.8	fisher_strand_p_value=0.0311626	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=719/1185	major_frequency=9.515e-01	minor_base=G	minor_cov=26/71	new_cov=719/1185	polymorphism_frequency=9.515e-01	polymorphism_score=177.2	prediction=consensus	ref_cov=26/71	total_cov=749/1257
RA	273	.	NC_000913	366257	0	A	G	bias_e_value=4089160	bias_p_value=0.880971	consensus_score=1087.9	fisher_strand_p_value=0.553634	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=197/95	major_frequency=9.898e-01	minor_base=A	minor_cov=3/0	new_cov=197/95	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=3/0	total_cov=200/96
RA	274	.	NC_000913	366705	0	G	T	bias_e_value=1.40925e-279	bias_p_value=3.03609e-286	consensus_reject=FREQUENCY_CUTOFF	consensus_score=9178.9	fisher_strand_p_value=4.56604e-289	frequency=2.014e-01	ks_quality_p_value=1	major_base=G	major_cov=2004/1128	major_frequency=7.986e-01	minor_base=T	minor_cov=1/789	new_cov=1/789	polymorphism_frequency=2.014e-01	polymorphism_score=239.5	prediction=polymorphism	ref_cov=2004/1128	total_cov=2018/1918
RA	275	.	NC_000913	367186	0	C	T	bias_e_value=3078970	bias_p_value=0.663336	consensus_score=12268.2	fisher_strand_p_value=0.301785	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=1606/1899	major_frequency=9.731e-01	minor_base=C	minor_cov=50/47	new_cov=1606/1899	polymorphism_frequency=9.731e-01	polymorphism_score=147.1	prediction=consensus	ref_cov=50/47	total_cov=1657/1952
RA	276	.	NC_000913	367573	0	G	A	bias_e_value=3881650	bias_p_value=0.836265	consensus_score=352.1	fisher_strand_p_value=0.485437	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/53	major_frequency=9.903e-01	minor_base=C	minor_cov=1/0	new_cov=49/53	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/53
RA	277	.	NC_000913	377402	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.2	fisher_strand_p_value=1	frequency=2.738e-01	ks_quality_p_value=1	major_base=G	major_cov=36/25	major_frequency=7.262e-01	minor_base=A	minor_cov=14/9	new_cov=14/9	polymorphism_frequency=2.738e-01	polymorphism_score=53.5	prediction=polymorphism	ref_cov=36/25	total_cov=51/34
RA	278	.	NC_000913	377407	0	C	T	bias_e_value=4547660	bias_p_value=0.979751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.0	fisher_strand_p_value=0.809134	frequency=2.738e-01	ks_quality_p_value=0.995665	major_base=C	major_cov=35/26	major_frequency=7.262e-01	minor_base=T	minor_cov=14/9	new_cov=14/9	polymorphism_frequency=2.738e-01	polymorphism_score=59.5	prediction=polymorphism	ref_cov=35/26	total_cov=49/35
RA	279	.	NC_000913	377423	0	G	T	bias_e_value=4608580	bias_p_value=0.992876	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.5	fisher_strand_p_value=1	frequency=2.125e-01	ks_quality_p_value=0.883033	major_base=G	major_cov=36/27	major_frequency=7.875e-01	minor_base=T	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=2.125e-01	polymorphism_score=40.2	prediction=polymorphism	ref_cov=36/27	total_cov=47/34
RA	280	.	NC_000913	377425	0	C	T	bias_e_value=4620220	bias_p_value=0.995384	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.1	fisher_strand_p_value=1	frequency=2.048e-01	ks_quality_p_value=0.905465	major_base=C	major_cov=39/27	major_frequency=7.952e-01	minor_base=T	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=2.048e-01	polymorphism_score=41.7	prediction=polymorphism	ref_cov=39/27	total_cov=49/34
RA	281	.	NC_000913	466148	0	G	A	consensus_score=329.7	frequency=1	major_base=A	major_cov=64/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/34
RA	282	.	NC_000913	469271	0	G	A	consensus_score=230.0	frequency=1	major_base=A	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	283	.	NC_000913	480295	0	G	A	consensus_score=478.3	frequency=1	major_base=A	major_cov=60/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/74
RA	284	.	NC_000913	480296	0	G	A	consensus_score=473.0	frequency=1	major_base=A	major_cov=60/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/74
RA	285	.	NC_000913	502232	0	G	A	consensus_score=297.2	frequency=1	major_base=A	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	286	.	NC_000913	579042	0	T	G	consensus_score=353.9	frequency=1	major_base=G	major_cov=38/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/57
RA	287	.	NC_000913	616105	0	C	A	bias_e_value=159.868	bias_p_value=3.4442e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.1	fisher_strand_p_value=2.47628e-06	frequency=2.375e-01	ks_quality_p_value=1	major_base=C	major_cov=21/40	major_frequency=7.625e-01	minor_base=A	minor_cov=18/1	new_cov=18/1	polymorphism_frequency=2.375e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=21/40	total_cov=39/42
RA	288	.	NC_000913	662269	0	C	T	consensus_score=408.6	frequency=1	major_base=T	major_cov=49/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/70
RA	289	.	NC_000913	696470	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=271.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/40	major_frequency=9.875e-01	minor_base=C	minor_cov=1/0	new_cov=39/40	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=40/40
RA	290	.	NC_000913	710830	0	G	T	bias_e_value=0.0808849	bias_p_value=1.74259e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.8	fisher_strand_p_value=7.93735e-10	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=49/47	major_frequency=7.164e-01	minor_base=T	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.836e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=49/47	total_cov=49/85
RA	291	.	NC_000913	784677	0	G	A	consensus_score=302.6	frequency=1	major_base=A	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	292	.	NC_000913	847955	0	G	A	bias_e_value=2.96975e-05	bias_p_value=6.39804e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.9	fisher_strand_p_value=2.1198e-13	frequency=2.564e-01	ks_quality_p_value=1	major_base=G	major_cov=70/46	major_frequency=7.436e-01	minor_base=A	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=2.564e-01	polymorphism_score=50.2	prediction=polymorphism	ref_cov=70/46	total_cov=70/86
RA	293	.	NC_000913	968837	0	G	A	consensus_score=246.0	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	294	.	NC_000913	1040126	0	G	T	consensus_score=291.7	frequency=1	major_base=T	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	295	.	NC_000913	1061935	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=241.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/31	major_frequency=9.865e-01	minor_base=C	minor_cov=1/0	new_cov=42/31	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
RA	296	.	NC_000913	1069743	0	C	T	consensus_score=243.6	frequency=1	major_base=T	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	297	.	NC_000913	1098620	0	T	A	bias_e_value=4640170	bias_p_value=0.999681	consensus_score=323.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.974864	major_base=A	major_cov=46/51	major_frequency=9.898e-01	minor_base=C	minor_cov=0/1	new_cov=46/51	polymorphism_frequency=9.898e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	298	.	NC_000913	1111727	0	C	T	consensus_score=355.7	frequency=1	major_base=T	major_cov=62/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/41
RA	299	.	NC_000913	1111728	0	C	T	consensus_score=362.5	frequency=1	major_base=T	major_cov=62/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/41
RA	300	.	NC_000913	1156913	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=343.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/52	major_frequency=9.904e-01	minor_base=G	minor_cov=0/1	new_cov=51/52	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/53
RA	301	.	NC_000913	1169836	0	A	G	consensus_score=272.7	frequency=1	major_base=G	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	302	.	NC_000913	1189980	0	A	G	consensus_score=312.3	frequency=1	major_base=G	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	303	.	NC_000913	1196220	0	C	T	consensus_score=141.9	frequency=1	major_base=T	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	304	.	NC_000913	1196232	0	C	T	consensus_score=142.9	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	305	.	NC_000913	1196245	0	T	C	consensus_score=133.9	frequency=1	major_base=C	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	306	.	NC_000913	1196247	0	A	G	consensus_score=133.6	frequency=1	major_base=G	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	307	.	NC_000913	1196277	0	C	T	consensus_score=94.7	frequency=1	major_base=T	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	308	.	NC_000913	1196280	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=92.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=18/17	major_frequency=9.722e-01	minor_base=A	minor_cov=1/0	new_cov=18/17	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	309	.	NC_000913	1196283	0	A	G	bias_e_value=3836480	bias_p_value=0.826533	consensus_score=96.2	fisher_strand_p_value=0.472222	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=19/16	major_frequency=9.722e-01	minor_base=T	minor_cov=0/1	new_cov=19/16	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	310	.	NC_000913	1196292	0	C	T	consensus_score=85.4	frequency=1	major_base=T	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	311	.	NC_000913	1196304	0	G	A	consensus_score=77.3	frequency=1	major_base=A	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	312	.	NC_000913	1196316	0	T	A	consensus_score=64.4	deleted=1	frequency=1	major_base=A	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	313	.	NC_000913	1196325	0	A	G	consensus_score=41.6	deleted=1	frequency=1	major_base=G	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	314	.	NC_000913	1196352	0	C	A	consensus_score=35.0	deleted=1	frequency=1	major_base=A	major_cov=12/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/6
RA	315	.	NC_000913	1246568	0	C	A	bias_e_value=6.04145	bias_p_value=1.30157e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.8	fisher_strand_p_value=7.47648e-08	frequency=2.841e-01	ks_quality_p_value=1	major_base=C	major_cov=26/37	major_frequency=7.159e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.841e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=26/37	total_cov=51/37
RA	316	.	NC_000913	1272420	0	C	A	bias_e_value=0.0640568	bias_p_value=1.38004e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.2	fisher_strand_p_value=6.2168e-10	frequency=3.186e-01	ks_quality_p_value=1	major_base=C	major_cov=35/42	major_frequency=6.814e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.186e-01	polymorphism_score=28.9	prediction=polymorphism	ref_cov=35/42	total_cov=71/42
RA	317	.	NC_000913	1287396	0	T	G	bias_e_value=3921200	bias_p_value=0.844785	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.7	fisher_strand_p_value=0.497429	frequency=2.115e-01	ks_quality_p_value=1	major_base=T	major_cov=17/24	major_frequency=7.885e-01	minor_base=G	minor_cov=3/8	new_cov=3/8	polymorphism_frequency=2.115e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=17/24	total_cov=20/32
RA	318	.	NC_000913	1301992	0	A	T	consensus_score=327.8	frequency=1	major_base=T	major_cov=36/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/66
RA	319	.	NC_000913	1302454	0	A	.	bias_e_value=3920320	bias_p_value=0.844596	consensus_score=480.4	fisher_strand_p_value=0.501867	frequency=1	ks_quality_p_value=0.990617	major_base=.	major_cov=46/56	major_frequency=9.808e-01	minor_base=A	minor_cov=0/2	new_cov=46/56	polymorphism_frequency=9.808e-01	polymorphism_score=3.4	prediction=consensus	ref_cov=0/2	total_cov=46/58
RA	320	.	NC_000913	1306736	0	T	G	consensus_score=334.4	frequency=1	major_base=G	major_cov=53/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/37
RA	321	.	NC_000913	1310770	0	A	G	consensus_score=457.3	frequency=1	major_base=G	major_cov=78/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/42
RA	322	.	NC_000913	1322759	0	G	A	consensus_score=359.8	frequency=1	major_base=A	major_cov=66/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/42
RA	323	.	NC_000913	1337394	0	A	G	bias_e_value=3403260	bias_p_value=0.733201	consensus_score=324.9	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=0.974215	major_base=G	major_cov=55/32	major_frequency=9.886e-01	minor_base=T	minor_cov=0/1	new_cov=55/32	polymorphism_frequency=9.886e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=55/33
RA	324	.	NC_000913	1357202	0	C	T	consensus_score=336.0	frequency=1	major_base=T	major_cov=61/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/38
RA	325	.	NC_000913	1358859	0	T	C	bias_e_value=3769930	bias_p_value=0.812195	consensus_score=371.3	fisher_strand_p_value=0.453608	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=53/43	major_frequency=9.897e-01	minor_base=T	minor_cov=0/1	new_cov=53/43	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=53/44
RA	326	.	NC_000913	1401893	0	G	A	bias_e_value=3463180	bias_p_value=0.746109	consensus_score=254.5	fisher_strand_p_value=0.378378	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/46	major_frequency=9.865e-01	minor_base=C	minor_cov=1/0	new_cov=27/46	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/46
RA	327	.	NC_000913	1453992	0	G	A	consensus_score=319.4	frequency=1	major_base=A	major_cov=41/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/52
RA	328	.	NC_000913	1466432	0	A	G	bias_e_value=3156310	bias_p_value=0.679997	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.3	fisher_strand_p_value=0.315966	frequency=2.360e-01	ks_quality_p_value=1	major_base=A	major_cov=33/35	major_frequency=7.640e-01	minor_base=G	minor_cov=7/14	new_cov=7/14	polymorphism_frequency=2.360e-01	polymorphism_score=33.0	prediction=polymorphism	ref_cov=33/35	total_cov=40/49
RA	329	.	NC_000913	1470627	0	C	A	bias_e_value=6.43831e-06	bias_p_value=1.38707e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.4	fisher_strand_p_value=4.36707e-14	frequency=2.520e-01	ks_quality_p_value=1	major_base=C	major_cov=27/68	major_frequency=7.480e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.520e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=27/68	total_cov=59/68
RA	330	.	NC_000913	1502772	0	G	A	bias_e_value=9.18634	bias_p_value=1.97911e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.3	fisher_strand_p_value=1.16666e-07	frequency=2.022e-01	ks_quality_p_value=1	major_base=G	major_cov=47/24	major_frequency=7.978e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.022e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=47/24	total_cov=47/42
RA	331	.	NC_000913	1597364	0	T	C	consensus_score=381.0	frequency=1	major_base=C	major_cov=56/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/47
RA	332	.	NC_000913	1643679	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=245.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/37	major_frequency=9.859e-01	minor_base=G	minor_cov=0/1	new_cov=33/37	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	333	.	NC_000913	1652331	0	T	C	consensus_score=355.0	frequency=1	major_base=C	major_cov=51/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	334	.	NC_000913	1721136	0	C	T	consensus_score=360.0	frequency=1	major_base=T	major_cov=41/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/67
RA	335	.	NC_000913	1756353	0	C	A	bias_e_value=0.020569	bias_p_value=4.43139e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.3	fisher_strand_p_value=1.89483e-10	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=36/49	major_frequency=7.143e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.857e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=36/49	total_cov=70/49
RA	336	.	NC_000913	1776100	0	G	A	consensus_score=369.0	frequency=1	major_base=A	major_cov=58/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/53
RA	337	.	NC_000913	1776715	0	A	T	consensus_score=337.6	frequency=1	major_base=T	major_cov=49/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/47
RA	338	.	NC_000913	1894839	0	T	C	consensus_score=300.1	frequency=1	major_base=C	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	339	.	NC_000913	1955010	0	G	A	consensus_score=343.7	frequency=1	major_base=A	major_cov=56/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/42
RA	340	.	NC_000913	1994637	0	A	G	consensus_score=442.5	frequency=1	major_base=G	major_cov=61/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/55
RA	341	.	NC_000913	2040433	0	C	A	consensus_score=273.6	frequency=1	major_base=A	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	342	.	NC_000913	2041411	0	G	A	consensus_score=419.5	frequency=1	major_base=A	major_cov=59/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/58
RA	343	.	NC_000913	2046506	0	G	T	bias_e_value=3479540	bias_p_value=0.749633	consensus_score=309.9	fisher_strand_p_value=0.382022	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/55	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=33/55	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/55
RA	344	.	NC_000913	2085319	0	G	A	consensus_score=390.4	frequency=1	major_base=A	major_cov=77/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/39
RA	345	.	NC_000913	2086634	0	G	A	consensus_score=323.8	frequency=1	major_base=A	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	346	.	NC_000913	2103891	0	G	A	bias_e_value=3955770	bias_p_value=0.852234	consensus_score=404.6	fisher_strand_p_value=0.508264	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=68/51	major_frequency=9.835e-01	minor_base=C	minor_cov=2/0	new_cov=68/51	polymorphism_frequency=9.835e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=70/52
RA	347	.	NC_000913	2111259	0	G	.	consensus_score=480.0	frequency=1	major_base=.	major_cov=43/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	348	.	NC_000913	2122908	0	G	A	consensus_score=304.4	frequency=1	major_base=A	major_cov=46/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	349	.	NC_000913	2134498	0	G	A	consensus_score=232.0	frequency=1	major_base=A	major_cov=47/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/23
RA	350	.	NC_000913	2137543	0	G	A	consensus_score=432.8	frequency=1	major_base=A	major_cov=70/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/54
RA	351	.	NC_000913	2159413	0	C	T	bias_e_value=36016.9	bias_p_value=0.0077595	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.1	fisher_strand_p_value=0.000978571	frequency=2.295e-01	ks_quality_p_value=1	major_base=C	major_cov=25/22	major_frequency=7.705e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.295e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=25/22	total_cov=40/22
RA	352	.	NC_000913	2171384	0	A	C	bias_e_value=554154	bias_p_value=0.119387	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.2	fisher_strand_p_value=0.0255888	frequency=2.025e-01	ks_quality_p_value=1	major_base=A	major_cov=40/23	major_frequency=7.975e-01	minor_base=C	minor_cov=5/11	new_cov=5/11	polymorphism_frequency=2.025e-01	polymorphism_score=43.0	prediction=polymorphism	ref_cov=40/23	total_cov=45/34
RA	353	.	NC_000913	2173363	0	C	.	consensus_score=304.0	frequency=1	major_base=.	major_cov=37/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/28
RA	354	.	NC_000913	2173364	0	C	.	consensus_score=304.0	frequency=1	major_base=.	major_cov=37/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/28
RA	355	.	NC_000913	2173448	0	C	T	consensus_score=200.6	frequency=1	major_base=T	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	356	.	NC_000913	2188087	0	T	C	consensus_score=445.3	frequency=1	major_base=C	major_cov=49/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/67
RA	357	.	NC_000913	2304522	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=25.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=5/9	major_frequency=9.333e-01	minor_base=G	minor_cov=0/1	new_cov=5/9	polymorphism_frequency=9.333e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=5/10
RA	358	.	NC_000913	2304523	0	G	C	bias_e_value=4641440	bias_p_value=0.999955	consensus_score=30.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990521	major_base=C	major_cov=5/9	major_frequency=9.333e-01	minor_base=T	minor_cov=0/1	new_cov=5/9	polymorphism_frequency=9.333e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	359	.	NC_000913	2304537	0	A	G	consensus_score=27.2	frequency=1	major_base=G	major_cov=5/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/8
RA	360	.	NC_000913	2304540	0	C	T	consensus_score=21.3	frequency=1	major_base=T	major_cov=5/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/8
RA	361	.	NC_000913	2304549	0	C	T	bias_e_value=4495490	bias_p_value=0.968512	consensus_score=20.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.759781	major_base=T	major_cov=5/8	major_frequency=9.286e-01	minor_base=C	minor_cov=0/1	new_cov=5/8	polymorphism_frequency=9.286e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/1	total_cov=5/9
RA	362	.	NC_000913	2304567	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=14.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=3/7	major_frequency=8.333e-01	minor_base=C	minor_cov=0/2	new_cov=3/7	polymorphism_frequency=8.333e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=0/2	total_cov=3/9
RA	363	.	NC_000913	2304575	0	G	A	bias_e_value=4633460	bias_p_value=0.998236	consensus_score=14.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.941194	major_base=A	major_cov=3/8	major_frequency=9.167e-01	minor_base=G	minor_cov=0/1	new_cov=3/8	polymorphism_frequency=9.167e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=3/9
RA	364	.	NC_000913	2329209	0	A	G	bias_e_value=2744850	bias_p_value=0.591351	consensus_score=273.6	fisher_strand_p_value=0.246253	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/42	major_frequency=9.639e-01	minor_base=T	minor_cov=0/3	new_cov=38/42	polymorphism_frequency=9.639e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	365	.	NC_000913	2339162	0	C	T	consensus_score=306.5	frequency=1	major_base=T	major_cov=38/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/53
RA	366	.	NC_000913	2384808	0	C	T	bias_e_value=3746830	bias_p_value=0.807219	consensus_score=374.8	fisher_strand_p_value=0.447368	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/50	major_frequency=9.912e-01	minor_base=C	minor_cov=0/1	new_cov=63/50	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=63/51
RA	367	.	NC_000913	2410419	0	G	A	consensus_score=308.0	frequency=1	major_base=A	major_cov=47/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/42
RA	368	.	NC_000913	2427716	0	C	A	bias_e_value=1.75923e-06	bias_p_value=3.79008e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.3	fisher_strand_p_value=1.14501e-14	frequency=2.869e-01	ks_quality_p_value=1	major_base=C	major_cov=25/62	major_frequency=7.131e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.869e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=25/62	total_cov=60/62
RA	369	.	NC_000913	2472817	0	C	A	bias_e_value=9.15679	bias_p_value=1.97274e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.5	fisher_strand_p_value=1.16267e-07	frequency=3.218e-01	ks_quality_p_value=1	major_base=C	major_cov=27/32	major_frequency=6.782e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.218e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=27/32	total_cov=55/32
RA	370	.	NC_000913	2484827	0	C	T	bias_e_value=3724520	bias_p_value=0.802412	consensus_score=375.7	fisher_strand_p_value=0.441441	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/62	major_frequency=9.910e-01	minor_base=C	minor_cov=1/0	new_cov=48/62	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/62
RA	371	.	NC_000913	2510609	0	C	T	bias_e_value=3769490	bias_p_value=0.8121	consensus_score=277.6	fisher_strand_p_value=0.453488	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/47	major_frequency=9.884e-01	minor_base=C	minor_cov=1/0	new_cov=38/47	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/48
RA	372	.	NC_000913	2587112	0	C	T	consensus_score=289.0	frequency=1	major_base=T	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	373	.	NC_000913	2732992	0	G	A	consensus_score=370.2	frequency=1	major_base=A	major_cov=48/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/59
RA	374	.	NC_000913	2823537	0	A	G	consensus_score=231.6	frequency=1	major_base=G	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	375	.	NC_000913	2856243	0	A	G	consensus_score=335.0	frequency=1	major_base=G	major_cov=39/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/53
RA	376	.	NC_000913	2867454	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=327.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=74/26	major_frequency=9.901e-01	minor_base=C	minor_cov=1/0	new_cov=74/26	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/26
RA	377	.	NC_000913	2871153	0	T	G	consensus_score=292.8	frequency=1	major_base=G	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	378	.	NC_000913	2926543	0	C	T	consensus_score=327.5	frequency=1	major_base=T	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	379	.	NC_000913	2926544	0	C	T	bias_e_value=3821990	bias_p_value=0.823411	consensus_score=325.1	fisher_strand_p_value=0.468085	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/50	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=43/50	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=44/50
RA	380	.	NC_000913	2926772	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=280.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/35	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=43/35	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=44/35
RA	381	.	NC_000913	2990480	0	C	A	bias_e_value=0.056171	bias_p_value=1.21015e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.2	fisher_strand_p_value=5.41791e-10	frequency=3.033e-01	ks_quality_p_value=1	major_base=C	major_cov=40/45	major_frequency=6.967e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.033e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=40/45	total_cov=77/45
RA	382	.	NC_000913	3028546	0	G	A	consensus_score=277.6	frequency=1	major_base=A	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	383	.	NC_000913	3050472	0	G	A	consensus_score=323.8	frequency=1	major_base=A	major_cov=32/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/58
RA	384	.	NC_000913	3054886	0	G	T	bias_e_value=0.00683222	bias_p_value=1.47194e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.9	fisher_strand_p_value=5.99888e-11	frequency=2.935e-01	ks_quality_p_value=1	major_base=G	major_cov=19/46	major_frequency=7.065e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.935e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=19/46	total_cov=46/46
RA	385	.	NC_000913	3054894	0	G	T	bias_e_value=0.0545049	bias_p_value=1.17426e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.5	fisher_strand_p_value=5.24979e-10	frequency=2.532e-01	ks_quality_p_value=1	major_base=G	major_cov=14/45	major_frequency=7.468e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.532e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=14/45	total_cov=34/45
RA	386	.	NC_000913	3061916	0	C	T	consensus_score=365.9	frequency=1	major_base=T	major_cov=65/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/38
RA	387	.	NC_000913	3065449	0	G	A	consensus_score=227.9	frequency=1	major_base=A	major_cov=45/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/28
RA	388	.	NC_000913	3065861	0	G	A	consensus_score=324.6	frequency=1	major_base=A	major_cov=31/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/58
RA	389	.	NC_000913	3089260	0	T	C	consensus_score=287.2	frequency=1	major_base=C	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	390	.	NC_000913	3090968	0	G	A	consensus_score=246.9	frequency=1	major_base=A	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	391	.	NC_000913	3104887	0	G	A	consensus_score=368.8	frequency=1	major_base=A	major_cov=53/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/53
RA	392	.	NC_000913	3120786	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=330.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/47	major_frequency=9.896e-01	minor_base=G	minor_cov=1/0	new_cov=48/47	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/47
RA	393	.	NC_000913	3121033	0	T	C	consensus_score=394.0	frequency=1	major_base=C	major_cov=50/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/57
RA	394	.	NC_000913	3127981	0	G	A	consensus_score=396.3	frequency=1	major_base=A	major_cov=78/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/39
RA	395	.	NC_000913	3130161	0	G	A	consensus_score=336.9	frequency=1	major_base=A	major_cov=37/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/63
RA	396	.	NC_000913	3132077	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=385.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/53	major_frequency=9.907e-01	minor_base=C	minor_cov=1/0	new_cov=54/53	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/53
RA	397	.	NC_000913	3133175	0	G	A	consensus_score=221.7	frequency=1	major_base=A	major_cov=42/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/27
RA	398	.	NC_000913	3134263	0	G	A	consensus_score=375.4	frequency=1	major_base=A	major_cov=64/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/42
RA	399	.	NC_000913	3145944	0	G	A	consensus_score=352.2	frequency=1	major_base=A	major_cov=48/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	400	.	NC_000913	3150316	0	G	A	bias_e_value=3951930	bias_p_value=0.851406	consensus_score=236.0	fisher_strand_p_value=0.507042	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/30	major_frequency=9.722e-01	minor_base=C	minor_cov=2/0	new_cov=40/30	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	401	.	NC_000913	3162216	0	G	A	consensus_score=291.4	frequency=1	major_base=A	major_cov=32/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/51
RA	402	.	NC_000913	3176625	0	G	A	consensus_score=291.0	frequency=1	major_base=A	major_cov=40/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/50
RA	403	.	NC_000913	3179383	0	G	A	consensus_score=231.9	frequency=1	major_base=A	major_cov=41/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/27
RA	404	.	NC_000913	3186297	0	G	A	consensus_score=101.3	frequency=1	major_base=A	major_cov=17/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/19
RA	405	.	NC_000913	3193351	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=320.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=50/49	major_frequency=9.900e-01	minor_base=G	minor_cov=1/0	new_cov=50/49	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/49
RA	406	.	NC_000913	3204617	0	G	A	consensus_score=311.1	frequency=1	major_base=A	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	407	.	NC_000913	3207549	0	G	.	bias_e_value=3585690	bias_p_value=0.772504	consensus_score=429.8	fisher_strand_p_value=0.406593	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=36/54	major_frequency=9.890e-01	minor_base=C	minor_cov=1/0	new_cov=36/54	polymorphism_frequency=9.890e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=37/54
RA	408	.	NC_000913	3219128	0	G	A	consensus_score=350.0	frequency=1	major_base=A	major_cov=78/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/29
RA	409	.	NC_000913	3224895	0	C	T	consensus_score=244.8	frequency=1	major_base=T	major_cov=44/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/25
RA	410	.	NC_000913	3227339	0	C	T	bias_e_value=3921490	bias_p_value=0.844849	consensus_score=395.3	fisher_strand_p_value=0.497521	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/62	major_frequency=9.835e-01	minor_base=G	minor_cov=0/2	new_cov=57/62	polymorphism_frequency=9.835e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/64
RA	411	.	NC_000913	3240423	0	C	T	consensus_score=257.9	frequency=1	major_base=T	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	412	.	NC_000913	3256157	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=233.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/37	major_frequency=9.859e-01	minor_base=G	minor_cov=0/1	new_cov=33/37	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	413	.	NC_000913	3259283	0	G	A	consensus_score=336.8	frequency=1	major_base=A	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	414	.	NC_000913	3269935	0	A	C	bias_e_value=45.3423	bias_p_value=9.76857e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.7	fisher_strand_p_value=6.40071e-07	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=36/36	major_frequency=7.273e-01	minor_base=C	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.727e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=36/36	total_cov=63/36
RA	415	.	NC_000913	3270497	0	C	T	consensus_score=151.9	frequency=1	major_base=T	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	416	.	NC_000913	3275902	0	A	T	bias_e_value=3910860	bias_p_value=0.842557	consensus_score=293.0	fisher_strand_p_value=0.494253	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/42	major_frequency=9.885e-01	minor_base=G	minor_cov=0/1	new_cov=44/42	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	417	.	NC_000913	3292312	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=271.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/58	major_frequency=9.881e-01	minor_base=G	minor_cov=0/1	new_cov=25/58	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/59
RA	418	.	NC_000913	3304647	0	T	C	consensus_score=269.2	frequency=1	major_base=C	major_cov=42/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/33
RA	419	.	NC_000913	3329743	0	G	T	bias_e_value=3284000	bias_p_value=0.707506	consensus_score=315.5	fisher_strand_p_value=0.340659	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=60/30	major_frequency=9.890e-01	minor_base=G	minor_cov=0/1	new_cov=60/30	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=60/31
RA	420	.	NC_000913	3377240	0	T	G	consensus_score=347.3	frequency=1	major_base=G	major_cov=37/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/55
RA	421	.	NC_000913	3388041	0	T	G	bias_e_value=3680820	bias_p_value=0.792998	consensus_score=349.6	fisher_strand_p_value=0.430108	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=53/39	major_frequency=9.892e-01	minor_base=T	minor_cov=0/1	new_cov=53/39	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=53/40
RA	422	.	NC_000913	3401345	0	G	T	bias_e_value=0.50713	bias_p_value=1.09256e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.2	fisher_strand_p_value=5.45556e-09	frequency=3.303e-01	ks_quality_p_value=1	major_base=G	major_cov=37/36	major_frequency=6.697e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.303e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=37/36	total_cov=37/72
RA	423	.	NC_000913	3506393	0	T	C	consensus_score=309.3	frequency=1	major_base=C	major_cov=50/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/34
RA	424	.	NC_000913	3524184	0	C	T	consensus_score=255.8	frequency=1	major_base=T	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	425	.	NC_000913	3543085	0	C	A	bias_e_value=4.43655	bias_p_value=9.55812e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.4	fisher_strand_p_value=5.38901e-08	frequency=2.880e-01	ks_quality_p_value=1	major_base=C	major_cov=39/50	major_frequency=7.120e-01	minor_base=A	minor_cov=34/2	new_cov=34/2	polymorphism_frequency=2.880e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=39/50	total_cov=73/53
RA	426	.	NC_000913	3558291	0	C	T	consensus_score=531.0	frequency=1	major_base=T	major_cov=52/98	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/98	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/98
RA	427	.	NC_000913	3559621	0	C	T	consensus_score=161.6	frequency=1	major_base=T	major_cov=22/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/28
RA	428	.	NC_000913	3560119	0	A	G	bias_e_value=3599860	bias_p_value=0.775555	consensus_score=373.0	fisher_strand_p_value=0.41	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=59/40	major_frequency=9.900e-01	minor_base=T	minor_cov=0/1	new_cov=59/40	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/41
RA	429	.	NC_000913	3560455	1	.	G	bias_e_value=3912830	bias_p_value=0.842982	consensus_score=340.9	fisher_strand_p_value=0.495091	frequency=1	ks_quality_p_value=0.999527	major_base=G	major_cov=45/46	major_frequency=9.785e-01	minor_base=.	minor_cov=0/2	new_cov=45/46	polymorphism_frequency=9.785e-01	polymorphism_score=0.0	prediction=consensus	ref_cov=0/2	total_cov=46/48
RA	430	.	NC_000913	3579050	0	G	A	consensus_score=300.5	frequency=1	major_base=A	major_cov=39/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/49
RA	431	.	NC_000913	3581316	0	G	A	consensus_score=302.8	frequency=1	major_base=A	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	432	.	NC_000913	3581850	0	G	A	bias_e_value=3837240	bias_p_value=0.826697	consensus_score=437.3	fisher_strand_p_value=0.472441	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=67/59	major_frequency=9.921e-01	minor_base=G	minor_cov=0/1	new_cov=67/59	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=67/60
RA	433	.	NC_000913	3583969	0	G	A	consensus_score=88.8	frequency=1	major_base=A	major_cov=27/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/5
RA	434	.	NC_000913	3585517	0	G	A	consensus_score=272.8	frequency=1	major_base=A	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	435	.	NC_000913	3587531	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=314.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999045	major_base=A	major_cov=53/38	major_frequency=9.891e-01	minor_base=C	minor_cov=1/0	new_cov=53/38	polymorphism_frequency=9.891e-01	polymorphism_score=-7.0	prediction=consensus	ref_cov=0/0	total_cov=54/38
RA	436	.	NC_000913	3588787	0	G	A	consensus_score=254.1	frequency=1	major_base=A	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	437	.	NC_000913	3589956	0	G	A	consensus_score=277.9	frequency=1	major_base=A	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	438	.	NC_000913	3621090	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=81.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/19	major_frequency=9.778e-01	minor_base=C	minor_cov=1/0	new_cov=25/19	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/19
RA	439	.	NC_000913	3647677	0	C	T	consensus_score=281.6	frequency=1	major_base=T	major_cov=51/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/34
RA	440	.	NC_000913	3692288	0	A	T	bias_e_value=1859670	bias_p_value=0.400648	consensus_score=128.2	fisher_strand_p_value=0.132669	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/18	major_frequency=9.091e-01	minor_base=A	minor_cov=4/0	new_cov=22/18	polymorphism_frequency=9.091e-01	polymorphism_score=7.8	prediction=consensus	ref_cov=4/0	total_cov=26/18
RA	441	.	NC_000913	3695455	0	A	G	bias_e_value=4632880	bias_p_value=0.998109	consensus_score=280.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.93914	major_base=G	major_cov=51/29	major_frequency=9.302e-01	minor_base=A	minor_cov=4/2	new_cov=51/29	polymorphism_frequency=9.302e-01	polymorphism_score=8.2	prediction=consensus	ref_cov=4/2	total_cov=55/31
RA	442	.	NC_000913	3707947	0	C	A	consensus_score=417.2	frequency=1	major_base=A	major_cov=79/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/47
RA	443	.	NC_000913	3725176	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=325.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=45/44	major_frequency=9.889e-01	minor_base=A	minor_cov=1/0	new_cov=45/44	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	444	.	NC_000913	3741871	0	G	T	bias_e_value=0.0433636	bias_p_value=9.34228e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.3	fisher_strand_p_value=4.13247e-10	frequency=2.812e-01	ks_quality_p_value=1	major_base=G	major_cov=50/42	major_frequency=7.188e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.812e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=50/42	total_cov=50/78
RA	445	.	NC_000913	3815883	1	.	C	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=424.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996952	major_base=C	major_cov=52/60	major_frequency=9.573e-01	minor_base=.	minor_cov=2/3	new_cov=52/60	polymorphism_frequency=9.573e-01	polymorphism_score=9.5	prediction=consensus	ref_cov=2/3	total_cov=55/63
RA	446	.	NC_000913	3827026	0	C	T	consensus_score=325.0	frequency=1	major_base=T	major_cov=55/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/34
RA	447	.	NC_000913	3843750	0	C	A	bias_e_value=0.0926986	bias_p_value=1.9971e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.7	fisher_strand_p_value=9.15624e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=71/58	major_frequency=7.500e-01	minor_base=A	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=2.500e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=71/58	total_cov=114/58
RA	448	.	NC_000913	3911533	0	C	A	bias_e_value=8.60164e-09	bias_p_value=1.85314e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.0	fisher_strand_p_value=4.80406e-17	frequency=3.904e-01	ks_quality_p_value=1	major_base=C	major_cov=30/59	major_frequency=6.096e-01	minor_base=A	minor_cov=56/1	new_cov=56/1	polymorphism_frequency=3.904e-01	polymorphism_score=24.2	prediction=polymorphism	ref_cov=30/59	total_cov=86/60
RA	449	.	NC_000913	3927292	0	T	C	consensus_score=330.7	frequency=1	major_base=C	major_cov=25/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/63
RA	450	.	NC_000913	3937909	0	G	A	consensus_score=392.2	frequency=1	major_base=A	major_cov=41/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/70
RA	451	.	NC_000913	3937997	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=382.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/56	major_frequency=9.910e-01	minor_base=C	minor_cov=0/1	new_cov=54/56	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/57
RA	452	.	NC_000913	3938441	0	C	.	bias_e_value=4641650	bias_p_value=1	consensus_score=465.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=50/53	major_frequency=9.717e-01	minor_base=C	minor_cov=1/2	new_cov=50/53	polymorphism_frequency=9.717e-01	polymorphism_score=3.9	prediction=consensus	ref_cov=1/2	total_cov=51/55
RA	453	.	NC_000913	3941874	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=221.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/45	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=35/45	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	454	.	NC_000913	3946246	0	G	A	bias_e_value=3910970	bias_p_value=0.842582	consensus_score=177.4	fisher_strand_p_value=0.495185	frequency=1	ks_quality_p_value=0.998191	major_base=A	major_cov=47/46	major_frequency=9.789e-01	minor_base=G	minor_cov=2/0	new_cov=47/46	polymorphism_frequency=9.789e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=2/0	total_cov=49/46
RA	455	.	NC_000913	3950099	0	C	T	consensus_score=565.8	frequency=1	major_base=T	major_cov=101/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=101/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=101/59
RA	456	.	NC_000913	3956003	0	G	A	consensus_score=200.1	frequency=1	major_base=A	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	457	.	NC_000913	4040623	0	G	A	bias_e_value=2018050	bias_p_value=0.434769	consensus_score=174.0	fisher_strand_p_value=0.226433	frequency=1	ks_quality_p_value=0.662918	major_base=A	major_cov=48/32	major_frequency=8.602e-01	minor_base=G	minor_cov=5/8	new_cov=48/32	polymorphism_frequency=8.602e-01	polymorphism_score=28.4	prediction=consensus	ref_cov=5/8	total_cov=53/40
RA	458	.	NC_000913	4084932	0	G	T	consensus_score=259.5	frequency=1	major_base=T	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	459	.	NC_000913	4139298	0	G	A	bias_e_value=3862440	bias_p_value=0.832127	consensus_score=324.0	fisher_strand_p_value=0.48913	frequency=1	ks_quality_p_value=0.980836	major_base=A	major_cov=44/47	major_frequency=9.891e-01	minor_base=G	minor_cov=1/0	new_cov=44/47	polymorphism_frequency=9.891e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=45/47
RA	460	.	NC_000913	4142335	0	A	T	bias_e_value=3294910	bias_p_value=0.709857	consensus_score=271.0	fisher_strand_p_value=0.373769	frequency=1	ks_quality_p_value=0.917277	major_base=T	major_cov=56/30	major_frequency=8.515e-01	minor_base=A	minor_cov=12/3	new_cov=56/30	polymorphism_frequency=8.515e-01	polymorphism_score=51.6	prediction=consensus	ref_cov=12/3	total_cov=68/34
RA	461	.	NC_000913	4160157	0	G	A	consensus_score=318.3	frequency=1	major_base=A	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	462	.	NC_000913	4166856	0	G	A	bias_e_value=3436830	bias_p_value=0.740433	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.6	fisher_strand_p_value=0.372584	frequency=5.000e-01	ks_quality_p_value=1	major_base=G	major_cov=12/11	major_frequency=5.000e-01	minor_base=A	minor_cov=8/15	new_cov=8/15	polymorphism_frequency=5.000e-01	polymorphism_score=67.8	prediction=polymorphism	ref_cov=12/11	total_cov=20/26
RA	463	.	NC_000913	4171728	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=83.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/22	major_frequency=9.107e-01	minor_base=C	minor_cov=3/2	new_cov=29/22	polymorphism_frequency=9.107e-01	polymorphism_score=3.6	prediction=consensus	ref_cov=3/2	total_cov=33/24
RA	464	.	NC_000913	4171781	0	A	G	bias_e_value=2736740	bias_p_value=0.589605	consensus_score=122.8	fisher_strand_p_value=0.245009	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=26/29	major_frequency=9.483e-01	minor_base=T	minor_cov=0/3	new_cov=26/29	polymorphism_frequency=9.483e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	465	.	NC_000913	4175827	0	C	T	bias_e_value=3593660	bias_p_value=0.774221	consensus_score=333.3	fisher_strand_p_value=0.408602	frequency=1	ks_quality_p_value=0.999766	major_base=T	major_cov=55/37	major_frequency=9.892e-01	minor_base=G	minor_cov=0/1	new_cov=55/37	polymorphism_frequency=9.892e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=55/38
RA	466	.	NC_000913	4178883	0	C	T	consensus_score=269.9	frequency=1	major_base=T	major_cov=29/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/53
RA	467	.	NC_000913	4179001	0	C	T	bias_e_value=3356960	bias_p_value=0.723226	consensus_score=304.3	fisher_strand_p_value=0.355556	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/58	major_frequency=9.889e-01	minor_base=C	minor_cov=1/0	new_cov=31/58	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/58
RA	468	.	NC_000913	4185777	0	C	T	consensus_score=339.2	frequency=1	major_base=T	major_cov=47/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/54
RA	469	.	NC_000913	4193177	0	C	T	consensus_score=199.6	frequency=1	major_base=T	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	470	.	NC_000913	4193820	0	C	T	consensus_score=222.5	frequency=1	major_base=T	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	471	.	NC_000913	4219752	0	C	T	consensus_score=250.6	frequency=1	major_base=T	major_cov=51/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/22
RA	472	.	NC_000913	4222743	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=336.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/56	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=40/56	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=41/57
RA	473	.	NC_000913	4223638	0	T	C	consensus_score=390.1	frequency=1	major_base=C	major_cov=37/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/72
RA	474	.	NC_000913	4224483	0	C	T	consensus_score=193.4	frequency=1	major_base=T	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	475	.	NC_000913	4234479	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=302.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/31	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=57/31	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=58/31
RA	476	.	NC_000913	4249684	0	C	T	consensus_score=300.0	frequency=1	major_base=T	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	477	.	NC_000913	4265668	0	C	T	consensus_score=368.1	frequency=1	major_base=T	major_cov=51/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	478	.	NC_000913	4269449	0	C	T	consensus_score=401.4	frequency=1	major_base=T	major_cov=41/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/73
RA	479	.	NC_000913	4271130	0	C	T	consensus_score=276.5	frequency=1	major_base=T	major_cov=31/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/48
RA	480	.	NC_000913	4278488	0	C	T	consensus_score=243.9	frequency=1	major_base=T	major_cov=21/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/50
RA	481	.	NC_000913	4282536	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=544.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999246	major_base=T	major_cov=65/89	major_frequency=9.935e-01	minor_base=G	minor_cov=0/1	new_cov=65/89	polymorphism_frequency=9.935e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/90
RA	482	.	NC_000913	4284077	0	C	T	consensus_score=268.6	frequency=1	major_base=T	major_cov=31/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/48
RA	483	.	NC_000913	4286033	0	C	T	consensus_score=230.5	frequency=1	major_base=T	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	484	.	NC_000913	4296187	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=43.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/13	major_frequency=8.077e-01	minor_base=C	minor_cov=2/3	new_cov=8/13	polymorphism_frequency=8.077e-01	polymorphism_score=5.5	prediction=consensus	ref_cov=2/3	total_cov=10/16
RA	485	.	NC_000913	4296191	0	A	C	bias_e_value=3421120	bias_p_value=0.737047	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.8	fisher_strand_p_value=0.36917	frequency=2.692e-01	ks_quality_p_value=1	major_base=A	major_cov=6/13	major_frequency=7.308e-01	minor_base=C	minor_cov=4/3	new_cov=4/3	polymorphism_frequency=2.692e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=6/13	total_cov=10/16
RA	486	.	NC_000913	4296300	0	C	T	bias_e_value=3380430	bias_p_value=0.728282	consensus_score=75.3	fisher_strand_p_value=0.397609	frequency=1	ks_quality_p_value=0.906613	major_base=T	major_cov=19/15	major_frequency=8.500e-01	minor_base=C	minor_cov=2/4	new_cov=19/15	polymorphism_frequency=8.500e-01	polymorphism_score=8.8	prediction=consensus	ref_cov=2/4	total_cov=21/19
RA	487	.	NC_000913	4296380	1	.	C	bias_e_value=4639630	bias_p_value=0.999564	consensus_score=214.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.970604	major_base=C	major_cov=38/27	major_frequency=9.848e-01	minor_base=T	minor_cov=1/0	new_cov=38/27	polymorphism_frequency=9.848e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=39/27
RA	488	.	NC_000913	4296380	2	.	G	consensus_score=219.6	frequency=1	major_base=G	major_cov=39/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/27
RA	489	.	NC_000913	4297469	0	C	T	consensus_score=274.4	frequency=1	major_base=T	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	490	.	NC_000913	4298199	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=180.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/39	major_frequency=9.825e-01	minor_base=G	minor_cov=0/1	new_cov=17/39	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/40
RA	491	.	NC_000913	4301071	0	C	T	consensus_score=323.7	frequency=1	major_base=T	major_cov=40/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/53
RA	492	.	NC_000913	4303755	0	C	T	consensus_score=228.9	frequency=1	major_base=T	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	493	.	NC_000913	4311337	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=368.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/64	major_frequency=9.909e-01	minor_base=C	minor_cov=0/1	new_cov=45/64	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=45/65
RA	494	.	NC_000913	4320079	0	C	T	consensus_score=176.5	frequency=1	major_base=T	major_cov=27/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/25
RA	495	.	NC_000913	4320785	0	C	T	consensus_score=176.8	frequency=1	major_base=T	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	496	.	NC_000913	4322605	0	C	T	consensus_score=188.7	frequency=1	major_base=T	major_cov=27/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	497	.	NC_000913	4325644	0	C	T	consensus_score=327.2	frequency=1	major_base=T	major_cov=39/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/56
RA	498	.	NC_000913	4325837	0	C	T	bias_e_value=3536760	bias_p_value=0.761961	consensus_score=280.7	fisher_strand_p_value=0.395062	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/49	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=31/49	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/49
RA	499	.	NC_000913	4332310	0	C	T	consensus_score=279.1	frequency=1	major_base=T	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	500	.	NC_000913	4337864	0	C	T	bias_e_value=3496440	bias_p_value=0.753275	consensus_score=443.8	fisher_strand_p_value=0.385827	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=78/48	major_frequency=9.921e-01	minor_base=G	minor_cov=0/1	new_cov=78/48	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/49
RA	501	.	NC_000913	4342825	0	C	T	bias_e_value=3752820	bias_p_value=0.808509	consensus_score=258.8	fisher_strand_p_value=0.482353	frequency=1	ks_quality_p_value=0.930802	major_base=T	major_cov=40/44	major_frequency=9.882e-01	minor_base=G	minor_cov=1/0	new_cov=40/44	polymorphism_frequency=9.882e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	502	.	NC_000913	4349259	0	C	T	consensus_score=485.3	frequency=1	major_base=T	major_cov=60/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/75
RA	503	.	NC_000913	4351519	0	C	T	consensus_score=351.4	frequency=1	major_base=T	major_cov=48/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/55
RA	504	.	NC_000913	4351590	0	C	T	bias_e_value=3814300	bias_p_value=0.821754	consensus_score=281.1	fisher_strand_p_value=0.465909	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/47	major_frequency=9.886e-01	minor_base=G	minor_cov=1/0	new_cov=40/47	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	505	.	NC_000913	4359909	0	C	T	consensus_score=456.0	frequency=1	major_base=T	major_cov=56/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/80
RA	506	.	NC_000913	4364798	0	C	T	bias_e_value=4247870	bias_p_value=0.915164	consensus_score=333.8	fisher_strand_p_value=0.617462	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/48	major_frequency=9.608e-01	minor_base=C	minor_cov=1/3	new_cov=50/48	polymorphism_frequency=9.608e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/3	total_cov=51/51
RA	507	.	NC_000913	4366668	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=299.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/64	major_frequency=9.903e-01	minor_base=G	minor_cov=0/1	new_cov=38/64	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/65
RA	508	.	NC_000913	4371401	0	C	T	consensus_score=393.3	frequency=1	major_base=T	major_cov=60/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/52
RA	509	.	NC_000913	4373421	0	C	T	consensus_score=366.6	frequency=1	major_base=T	major_cov=58/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/45
RA	510	.	NC_000913	4380469	0	C	T	consensus_score=271.7	frequency=1	major_base=T	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	511	.	NC_000913	4388120	0	C	T	consensus_score=222.8	frequency=1	major_base=T	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	512	.	NC_000913	4389838	0	C	T	consensus_score=242.3	frequency=1	major_base=T	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	513	.	NC_000913	4401607	0	C	T	consensus_score=298.6	frequency=1	major_base=T	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	514	.	NC_000913	4403010	0	C	T	consensus_score=194.7	frequency=1	major_base=T	major_cov=27/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/33
RA	515	.	NC_000913	4407045	0	C	T	consensus_score=240.7	frequency=1	major_base=T	major_cov=38/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/35
RA	516	.	NC_000913	4414625	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=172.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/33	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=18/33	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	517	.	NC_000913	4418862	0	C	T	consensus_score=351.3	frequency=1	major_base=T	major_cov=46/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/58
RA	518	.	NC_000913	4426929	0	C	T	bias_e_value=3752240	bias_p_value=0.808384	consensus_score=440.7	fisher_strand_p_value=0.448819	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/70	major_frequency=9.921e-01	minor_base=C	minor_cov=1/0	new_cov=56/70	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=57/70
RA	519	.	NC_000913	4430010	0	T	G	consensus_score=423.0	frequency=1	major_base=G	major_cov=58/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/57
RA	520	.	NC_000913	4433459	0	C	T	consensus_score=264.5	frequency=1	major_base=T	major_cov=29/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/47
RA	521	.	NC_000913	4435124	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=376.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998553	major_base=T	major_cov=60/51	major_frequency=9.911e-01	minor_base=C	minor_cov=1/0	new_cov=60/51	polymorphism_frequency=9.911e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=1/0	total_cov=61/51
RA	522	.	NC_000913	4435750	0	C	T	consensus_score=371.5	frequency=1	major_base=T	major_cov=52/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/55
RA	523	.	NC_000913	4451280	0	C	T	bias_e_value=3513080	bias_p_value=0.75686	consensus_score=250.1	fisher_strand_p_value=0.38961	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/29	major_frequency=9.870e-01	minor_base=G	minor_cov=0/1	new_cov=47/29	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/30
RA	524	.	NC_000913	4457392	0	C	T	consensus_score=254.2	frequency=1	major_base=T	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	525	.	NC_000913	4482901	0	C	T	consensus_score=318.9	frequency=1	major_base=T	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	526	.	NC_000913	4486869	0	T	A	bias_e_value=334106	bias_p_value=0.0719799	consensus_score=305.2	fisher_strand_p_value=0.0137107	frequency=1	ks_quality_p_value=0.990761	major_base=A	major_cov=57/39	major_frequency=9.505e-01	minor_base=C	minor_cov=0/5	new_cov=57/39	polymorphism_frequency=9.505e-01	polymorphism_score=6.3	prediction=consensus	ref_cov=0/0	total_cov=57/44
RA	527	.	NC_000913	4487022	0	C	T	consensus_score=300.4	frequency=1	major_base=T	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	528	.	NC_000913	4489775	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=264.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/32	major_frequency=9.744e-01	minor_base=C	minor_cov=1/1	new_cov=44/32	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=45/33
RA	529	.	NC_000913	4494499	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=529.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=74/74	major_frequency=9.933e-01	minor_base=C	minor_cov=0/1	new_cov=74/74	polymorphism_frequency=9.933e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=74/75
RA	530	.	NC_000913	4501500	0	C	T	bias_e_value=4623120	bias_p_value=0.996007	consensus_score=332.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.911979	major_base=T	major_cov=45/57	major_frequency=9.903e-01	minor_base=G	minor_cov=0/1	new_cov=45/57	polymorphism_frequency=9.903e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	531	.	NC_000913	4510238	0	T	G	bias_e_value=522786	bias_p_value=0.112629	consensus_score=444.6	fisher_strand_p_value=0.0237634	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=75/46	major_frequency=9.680e-01	minor_base=T	minor_cov=0/4	new_cov=75/46	polymorphism_frequency=9.680e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/4	total_cov=76/50
RA	532	.	NC_000913	4517355	0	C	T	consensus_score=193.9	frequency=1	major_base=T	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	533	.	NC_000913	4524401	0	C	T	consensus_score=383.9	frequency=1	major_base=T	major_cov=49/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/58
RA	534	.	NC_000913	4524596	0	C	T	consensus_score=249.6	frequency=1	major_base=T	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	535	.	NC_000913	4529039	0	C	T	consensus_score=409.7	frequency=1	major_base=T	major_cov=64/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/58
RA	536	.	NC_000913	4530797	0	C	T	consensus_score=327.0	frequency=1	major_base=T	major_cov=43/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	537	.	NC_000913	4541261	0	C	T	consensus_score=447.7	frequency=1	major_base=T	major_cov=52/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/75
RA	538	.	NC_000913	4553671	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=252.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/36	major_frequency=9.863e-01	minor_base=C	minor_cov=1/0	new_cov=36/36	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/36
RA	539	.	NC_000913	4564385	0	C	T	bias_e_value=3229930	bias_p_value=0.695859	consensus_score=335.9	fisher_strand_p_value=0.33	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=67/32	major_frequency=9.900e-01	minor_base=G	minor_cov=0/1	new_cov=67/32	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/33
RA	540	.	NC_000913	4570550	0	C	T	consensus_score=227.7	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	541	.	NC_000913	4571280	0	C	T	consensus_score=245.6	frequency=1	major_base=T	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	542	.	NC_000913	4585673	0	C	T	consensus_score=351.8	frequency=1	major_base=T	major_cov=44/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/62
RA	543	.	NC_000913	4587365	0	C	T	consensus_score=294.3	frequency=1	major_base=T	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	544	.	NC_000913	4604517	0	C	T	consensus_score=362.5	frequency=1	major_base=T	major_cov=49/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/57
RA	545	.	NC_000913	4636925	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=300.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=38/44	major_frequency=9.880e-01	minor_base=T	minor_cov=0/1	new_cov=38/44	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	546	.	NC_000913	4638240	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=261.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=47/34	major_frequency=9.878e-01	minor_base=C	minor_cov=1/0	new_cov=47/34	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/34
MC	547	.	NC_000913	257908	258683	766	0	left_inside_cov=1	left_outside_cov=142	right_inside_cov=3	right_outside_cov=144
MC	548	.	NC_000913	366261	366273	0	0	left_inside_cov=0	left_outside_cov=296	right_inside_cov=0	right_outside_cov=80
MC	549	.	NC_000913	565829	577187	0	0	left_inside_cov=0	left_outside_cov=98	right_inside_cov=0	right_outside_cov=114
MC	550	.	NC_000913	1196315	1211460	0	0	left_inside_cov=29	left_outside_cov=31	right_inside_cov=28	right_outside_cov=34
MC	551	.	NC_000913	1299499	1300697	1197	0	left_inside_cov=0	left_outside_cov=132	right_inside_cov=0	right_outside_cov=132
MC	552	.	NC_000913	1367750	1367925	0	0	left_inside_cov=0	left_outside_cov=98	right_inside_cov=0	right_outside_cov=98
MC	553	.	NC_000913	1978503	1979278	766	0	left_inside_cov=0	left_outside_cov=114	right_inside_cov=2	right_outside_cov=115
MC	554	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=80	right_inside_cov=0	right_outside_cov=80
MC	555	.	NC_000913	3423885	3424445	344	206	left_inside_cov=28	left_outside_cov=31	right_inside_cov=29	right_outside_cov=31
JC	556	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=67	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=293	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=292	max_left_minus=292	max_left_plus=241	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=149	max_min_right_minus=149	max_min_right_plus=137	max_pos_hash_score=588	max_right=289	max_right_minus=269	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.31	new_junction_read_count=127	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=124
JC	557	.	NC_000913	16974	1	NC_000913	3720633	1	0	alignment_overlap=0	coverage_minus=36	coverage_plus=68	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__16974__1__NC_000913__3720633__1__0____300__300__0__0	max_left=295	max_left_minus=286	max_left_plus=295	max_min_left=141	max_min_left_minus=122	max_min_left_plus=141	max_min_right=147	max_min_right_minus=107	max_min_right_plus=147	max_pos_hash_score=588	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.11	new_junction_read_count=108	polymorphism_frequency=9.816e-01	pos_hash_score=60	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=104
JC	558	.	NC_000913	16976	-1	NC_000913	3722075	-1	0	alignment_overlap=3	coverage_minus=60	coverage_plus=26	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__16978__-1__NC_000913__3722076__-1__3____300__300__0__0	max_left=294	max_left_minus=282	max_left_plus=294	max_min_left=138	max_min_left_minus=138	max_min_left_plus=129	max_min_right=130	max_min_right_minus=130	max_min_right_plus=123	max_pos_hash_score=582	max_right=296	max_right_minus=296	max_right_plus=267	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.92	new_junction_read_count=89	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=86
JC	559	.	NC_000913	249545	-1	NC_000913	373870	1	0	alignment_overlap=7	coverage_minus=50	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=5.350e-01	junction_possible_overlap_registers=286	key=NC_000913__249545__-1__NC_000913__373863__1__7____300__300__0__0	max_left=287	max_left_minus=287	max_left_plus=278	max_min_left=145	max_min_left_minus=145	max_min_left_plus=133	max_min_right=139	max_min_right_minus=135	max_min_right_plus=139	max_pos_hash_score=574	max_right=283	max_right_minus=273	max_right_plus=283	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.91	new_junction_read_count=86	polymorphism_frequency=5.350e-01	pos_hash_score=54	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=7	side_1_possible_overlap_registers=293	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=85
JC	560	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=65	coverage_plus=72	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=287	max_min_left=143	max_min_left_minus=135	max_min_left_plus=143	max_min_right=145	max_min_right_minus=145	max_min_right_plus=144	max_pos_hash_score=572	max_right=283	max_right_minus=283	max_right_plus=280	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.49	new_junction_read_count=141	polymorphism_frequency=9.966e-01	pos_hash_score=87	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=8	side_1_possible_overlap_registers=293	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=137
JC	561	.	NC_000913	273955	1	NC_000913	565828	-1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__273955__1__NC_000913__565828__-1__0____300__300__1__0	max_left=294	max_left_minus=284	max_left_plus=294	max_min_left=126	max_min_left_minus=113	max_min_left_plus=126	max_min_right=140	max_min_right_minus=134	max_min_right_plus=140	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=285	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=1.00	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	562	.	NC_000913	275149	-1	NC_000913	577188	1	0	alignment_overlap=0	coverage_minus=76	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__275149__-1__NC_000913__577188__1__0____300__300__1__0	max_left=293	max_left_minus=288	max_left_plus=293	max_min_left=146	max_min_left_minus=146	max_min_left_plus=146	max_min_right=141	max_min_right_minus=139	max_min_right_plus=141	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=281	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=114	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=113
JC	563	.	NC_000913	363779	-1	NC_000913	364155	1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.073e-03	junction_possible_overlap_registers=285	key=NC_000913__363779__-1__NC_000913__364147__1__8____300__300__0__0	max_left=233	max_left_minus=173	max_left_plus=233	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=122	max_min_right_minus=119	max_min_right_plus=122	max_pos_hash_score=572	max_right=122	max_right_minus=119	max_right_plus=122	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.073e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=29.64	side_1_overlap=8	side_1_possible_overlap_registers=293	side_1_read_count=2882	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=29.43	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=2783	side_2_redundant=0	total_non_overlap_reads=3
JC	564	.	NC_000913	365734	-1	NC_000913	366085	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.454e-03	junction_possible_overlap_registers=284	key=NC_000913__365734__-1__NC_000913__366076__1__9____300__300__0__0	max_left=195	max_left_minus=195	max_left_plus=155	max_min_left=92	max_min_left_minus=0	max_min_left_plus=92	max_min_right=136	max_min_right_minus=96	max_min_right_plus=136	max_pos_hash_score=570	max_right=150	max_right_minus=96	max_right_plus=150	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=1.454e-03	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=47.40	side_1_overlap=9	side_1_possible_overlap_registers=293	side_1_read_count=4608	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=25.49	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=2402	side_2_redundant=0	total_non_overlap_reads=5
JC	565	.	NC_000913	366180	-1	NC_000913	366274	1	0	alignment_overlap=0	coverage_minus=51	coverage_plus=24	flanking_left=300	flanking_right=300	frequency=1.175e-01	junction_possible_overlap_registers=293	key=NC_000913__366180__-1__NC_000913__366274__1__0____300__300__0__0	max_left=294	max_left_minus=289	max_left_plus=294	max_min_left=140	max_min_left_minus=136	max_min_left_plus=140	max_min_right=140	max_min_right_minus=140	max_min_right_plus=125	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=289	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.81	new_junction_read_count=79	polymorphism_frequency=1.175e-01	pos_hash_score=49	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=12.21	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=1187	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=75
JC	566	.	NC_000913	366907	1	NC_000913	366910	-1	0	alignment_overlap=9	coverage_minus=10	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=4.054e-03	junction_possible_overlap_registers=284	key=NC_000913__366907__1__NC_000913__366919__-1__9____300__300__0__0	max_left=261	max_left_minus=260	max_left_plus=261	max_min_left=133	max_min_left_minus=133	max_min_left_plus=118	max_min_right=137	max_min_right_minus=100	max_min_right_plus=137	max_pos_hash_score=570	max_right=263	max_right_minus=257	max_right_plus=263	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.19	new_junction_read_count=18	polymorphism_frequency=4.054e-03	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=46.92	side_1_overlap=9	side_1_possible_overlap_registers=293	side_1_read_count=4562	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=46.92	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=4422	side_2_redundant=0	total_non_overlap_reads=17
JC	567	.	NC_000913	458790	1	NC_000913	608008	1	0	alignment_overlap=3	coverage_minus=34	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__458787__1__NC_000913__608008__1__3____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=290	max_min_left=147	max_min_left_minus=141	max_min_left_plus=147	max_min_right=139	max_min_right_minus=135	max_min_right_plus=139	max_pos_hash_score=582	max_right=296	max_right_minus=296	max_right_plus=268	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.95	new_junction_read_count=91	polymorphism_frequency=9.889e-01	pos_hash_score=56	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=284	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=3	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=90
JC	568	.	NC_000913	458795	-1	NC_000913	609351	-1	0	alignment_overlap=4	coverage_minus=41	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__458799__-1__NC_000913__609351__-1__4____300__300__0__1	max_left=291	max_left_minus=282	max_left_plus=291	max_min_left=146	max_min_left_minus=146	max_min_left_plus=128	max_min_right=142	max_min_right_minus=137	max_min_right_plus=142	max_pos_hash_score=580	max_right=294	max_right_minus=294	max_right_plus=282	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.04	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=283	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=4	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=98
JC	569	.	NC_000913	780918	-1	NC_000913	781445	1	0	alignment_overlap=76	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=9.432e-02	junction_possible_overlap_registers=217	key=NC_000913__780918__-1__NC_000913__781369__1__76____300__300__0__0	max_left=205	max_left_minus=205	max_left_plus=10	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=9	max_min_right_minus=9	max_min_right_plus=9	max_pos_hash_score=436	max_right=9	max_right_minus=9	max_right_plus=9	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.07	new_junction_read_count=5	polymorphism_frequency=9.432e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=76	side_1_possible_overlap_registers=293	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=217	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=3
JC	570	.	NC_000913	781222	-1	NC_000913	781445	1	0	alignment_overlap=76	coverage_minus=5	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.547e-01	junction_possible_overlap_registers=217	key=NC_000913__781222__-1__NC_000913__781369__1__76____300__300__0__0	max_left=195	max_left_minus=195	max_left_plus=70	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=41	max_min_right_minus=41	max_min_right_plus=41	max_pos_hash_score=436	max_right=41	max_right_minus=41	max_right_plus=41	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.11	new_junction_read_count=8	polymorphism_frequency=1.547e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.66	side_1_overlap=76	side_1_possible_overlap_registers=293	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=217	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=7
JC	571	.	NC_000913	781322	-1	NC_000913	781811	1	0	alignment_overlap=39	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.150e-01	junction_possible_overlap_registers=254	key=NC_000913__781322__-1__NC_000913__781772__1__39____300__300__0__0	max_left=132	max_left_minus=93	max_left_plus=132	max_min_left=91	max_min_left_minus=28	max_min_left_plus=91	max_min_right=105	max_min_right_minus=31	max_min_right_plus=105	max_pos_hash_score=510	max_right=141	max_right_minus=42	max_right_plus=141	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=1.150e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=39	side_1_possible_overlap_registers=293	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=6
JC	572	.	NC_000913	781369	1	NC_000913	2521006	-1	-3	alignment_overlap=-3	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.565e-02	junction_possible_overlap_registers=290	key=NC_000913__781369__1__NC_000913__2521006__-1__-3__GAG__300__300__0__0	max_left=117	max_left_minus=117	max_left_plus=117	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=67	max_min_right_minus=67	max_min_right_plus=67	max_pos_hash_score=582	max_right=67	max_right_minus=67	max_right_plus=67	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.565e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=GAG
JC	573	.	NC_000913	781369	1	NC_000913	2521128	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.560e-02	junction_possible_overlap_registers=292	key=NC_000913__781369__1__NC_000913__2521128__-1__-1__G__300__300__0__0	max_left=117	max_left_minus=117	max_left_plus=117	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=69	max_min_right_minus=69	max_min_right_plus=69	max_pos_hash_score=586	max_right=69	max_right_minus=69	max_right_plus=69	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.560e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=G
JC	574	.	NC_000913	781543	-1	NC_000913	781809	1	0	alignment_overlap=24	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.520e-02	junction_possible_overlap_registers=269	key=NC_000913__781543__-1__NC_000913__781785__1__24____300__300__0__0	max_left=248	max_left_minus=248	max_left_plus=248	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=118	max_min_right_minus=118	max_min_right_plus=118	max_pos_hash_score=540	max_right=118	max_right_minus=118	max_right_plus=118	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.520e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=24	side_1_possible_overlap_registers=293	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=4
JC	575	.	NC_000913	1141986	-1	NC_000913	1142347	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.841e-02	junction_possible_overlap_registers=283	key=NC_000913__1141986__-1__NC_000913__1142337__1__10____300__300__0__0	max_left=154	max_left_minus=154	max_left_plus=154	max_min_left=74	max_min_left_minus=74	max_min_left_plus=0	max_min_right=81	max_min_right_minus=81	max_min_right_plus=81	max_pos_hash_score=568	max_right=166	max_right_minus=166	max_right_plus=81	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.841e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=10	side_1_possible_overlap_registers=293	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3
JC	576	.	NC_000913	1287185	-1	NC_000913	4175556	-1	-55	alignment_overlap=-55	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.141e-02	junction_possible_overlap_registers=238	key=NC_000913__1287185__-1__NC_000913__4175556__-1__-55__ATGAGTGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTA__300__300__0__0	max_left=142	max_left_minus=142	max_left_plus=142	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=478	max_right=68	max_right_minus=68	max_right_plus=68	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.141e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=ATGAGTGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTA
JC	577	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=60	coverage_plus=71	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=285	max_left_plus=294	max_min_left=147	max_min_left_minus=138	max_min_left_plus=147	max_min_right=144	max_min_right_minus=144	max_min_right_plus=142	max_pos_hash_score=580	max_right=295	max_right_minus=283	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.38	new_junction_read_count=132	polymorphism_frequency=1.000e+00	pos_hash_score=83	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=131
JC	578	.	NC_000913	1316396	-1	NC_000913	1316471	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.532e-02	junction_possible_overlap_registers=283	key=NC_000913__1316396__-1__NC_000913__1316461__1__10____300__300__0__0	max_left=151	max_left_minus=151	max_left_plus=111	max_min_left=111	max_min_left_minus=0	max_min_left_plus=111	max_min_right=138	max_min_right_minus=138	max_min_right_plus=0	max_pos_hash_score=568	max_right=288	max_right_minus=138	max_right_plus=288	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.532e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.22	side_1_overlap=10	side_1_possible_overlap_registers=293	side_1_read_count=119	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=116	side_2_redundant=0	total_non_overlap_reads=3
JC	579	.	NC_000913	1367749	-1	NC_000913	1367926	1	0	alignment_overlap=1	coverage_minus=48	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1367749__-1__NC_000913__1367925__1__1____300__300__0__0	max_left=298	max_left_minus=298	max_left_plus=297	max_min_left=146	max_min_left_minus=146	max_min_left_plus=142	max_min_right=143	max_min_right_minus=143	max_min_right_plus=130	max_pos_hash_score=586	max_right=298	max_right_minus=298	max_right_plus=292	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.01	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	580	.	NC_000913	1376615	-1	NC_000913	1376985	1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.530e-02	junction_possible_overlap_registers=280	key=NC_000913__1376615__-1__NC_000913__1376972__1__13____300__300__0__0	max_left=269	max_left_minus=269	max_left_plus=142	max_min_left=142	max_min_left_minus=0	max_min_left_plus=142	max_min_right=131	max_min_right_minus=131	max_min_right_plus=0	max_pos_hash_score=562	max_right=145	max_right_minus=131	max_right_plus=145	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.530e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=13	side_1_possible_overlap_registers=293	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=280	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=4
JC	581	.	NC_000913	1399590	1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=66	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1399590__1__NC_000913__2101749__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=297	max_min_left=142	max_min_left_minus=138	max_min_left_plus=142	max_min_right=150	max_min_right_minus=144	max_min_right_plus=150	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=294	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.30	new_junction_read_count=126	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=124
JC	582	.	NC_000913	1399593	-1	NC_000913	2290113	-1	0	alignment_overlap=1	coverage_minus=41	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1399594__-1__NC_000913__2290113__-1__1____300__300__0__1	max_left=298	max_left_minus=286	max_left_plus=298	max_min_left=146	max_min_left_minus=146	max_min_left_plus=139	max_min_right=145	max_min_right_minus=143	max_min_right_plus=145	max_pos_hash_score=586	max_right=292	max_right_minus=292	max_right_plus=288	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=100
JC	583	.	NC_000913	1679531	1	NC_000913	1679563	-1	0	alignment_overlap=0	coverage_minus=47	coverage_plus=28	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1679531__1__NC_000913__1679563__-1__0____300__300__0__0	max_left=299	max_left_minus=299	max_left_plus=273	max_min_left=149	max_min_left_minus=149	max_min_left_plus=122	max_min_right=149	max_min_right_minus=149	max_min_right_plus=148	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=267	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.77	new_junction_read_count=75	polymorphism_frequency=9.202e-01	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.07	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=75
JC	584	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=65	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=275	max_left_minus=275	max_left_plus=258	max_min_left=144	max_min_left_minus=131	max_min_left_plus=144	max_min_right=143	max_min_right_minus=143	max_min_right_plus=137	max_pos_hash_score=572	max_right=291	max_right_minus=291	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=113	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=113
JC	585	.	NC_000913	1978503	1	NC_000913	4434636	-1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1978503__1__NC_000913__4434636__-1__0____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=290	max_min_left=149	max_min_left_minus=139	max_min_left_plus=149	max_min_right=149	max_min_right_minus=149	max_min_right_plus=143	max_pos_hash_score=588	max_right=292	max_right_minus=284	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.05	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	586	.	NC_000913	2101749	1	NC_000913	2174359	1	0	alignment_overlap=0	coverage_minus=51	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2101749__1__NC_000913__2174359__1__0____300__300__1__0	max_left=294	max_left_minus=281	max_left_plus=294	max_min_left=146	max_min_left_minus=146	max_min_left_plus=138	max_min_right=149	max_min_right_minus=149	max_min_right_plus=144	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.12	new_junction_read_count=109	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=107
JC	587	.	NC_000913	2174362	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=27	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2174362__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=298	max_left_minus=296	max_left_plus=298	max_min_left=144	max_min_left_minus=130	max_min_left_plus=144	max_min_right=125	max_min_right_minus=117	max_min_right_plus=125	max_pos_hash_score=588	max_right=285	max_right_minus=285	max_right_plus=282	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.76	new_junction_read_count=74	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=70
JC	588	.	NC_000913	2288919	1	NC_000913	2378929	-1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2288919__1__NC_000913__2378929__-1__0____300__300__1__0	max_left=289	max_left_minus=286	max_left_plus=289	max_min_left=148	max_min_left_minus=141	max_min_left_plus=148	max_min_right=146	max_min_right_minus=137	max_min_right_plus=146	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=291	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.81	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	589	.	NC_000913	2288919	1	NC_000913	2993234	-1	0	alignment_overlap=0	coverage_minus=45	coverage_plus=68	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2288919__1__NC_000913__2993234__-1__0____300__300__1__0	max_left=294	max_left_minus=291	max_left_plus=294	max_min_left=146	max_min_left_minus=132	max_min_left_plus=146	max_min_right=148	max_min_right_minus=141	max_min_right_plus=148	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=279	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=113	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=113
JC	590	.	NC_000913	2290113	-1	NC_000913	2378926	1	0	alignment_overlap=0	coverage_minus=47	coverage_plus=28	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2290113__-1__NC_000913__2378926__1__0____300__300__1__0	max_left=288	max_left_minus=288	max_left_plus=271	max_min_left=146	max_min_left_minus=146	max_min_left_plus=144	max_min_right=149	max_min_right_minus=149	max_min_right_plus=80	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=296	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.78	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=75
JC	591	.	NC_000913	2357730	-1	NC_000913	2357926	1	0	alignment_overlap=40	coverage_minus=3	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=8.935e-02	junction_possible_overlap_registers=253	key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0	max_left=232	max_left_minus=180	max_left_plus=232	max_min_left=62	max_min_left_minus=0	max_min_left_plus=62	max_min_right=124	max_min_right_minus=104	max_min_right_plus=124	max_pos_hash_score=508	max_right=198	max_right_minus=104	max_right_plus=198	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=8.935e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=40	side_1_possible_overlap_registers=293	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=253	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=8
JC	592	.	NC_000913	2514274	1	NC_000913	2536312	1	0	alignment_overlap=2	coverage_minus=41	coverage_plus=26	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__2514274__1__NC_000913__2536310__1__2____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=291	max_min_left=138	max_min_left_minus=123	max_min_left_plus=138	max_min_right=148	max_min_right_minus=147	max_min_right_plus=148	max_pos_hash_score=584	max_right=293	max_right_minus=293	max_right_plus=247	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.70	new_junction_read_count=68	polymorphism_frequency=9.302e-01	pos_hash_score=42	prediction=consensus	read_count_offset=6	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=5	side_2_redundant=0	total_non_overlap_reads=67
JC	593	.	NC_000913	2515616	-1	NC_000913	2536317	-1	0	alignment_overlap=3	coverage_minus=49	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__2515616__-1__NC_000913__2536320__-1__3____300__300__1__0	max_left=296	max_left_minus=293	max_left_plus=296	max_min_left=142	max_min_left_minus=135	max_min_left_plus=142	max_min_right=138	max_min_right_minus=138	max_min_right_plus=137	max_pos_hash_score=582	max_right=295	max_right_minus=292	max_right_plus=295	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.91	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=6	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85
JC	594	.	NC_000913	2518116	-1	NC_000913	2518232	1	0	alignment_overlap=81	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.193e-02	junction_possible_overlap_registers=212	key=NC_000913__2518116__-1__NC_000913__2518151__1__81____300__300__0__0	max_left=205	max_left_minus=85	max_left_plus=205	max_min_left=85	max_min_left_minus=85	max_min_left_plus=78	max_min_right=12	max_min_right_minus=0	max_min_right_plus=12	max_pos_hash_score=426	max_right=149	max_right_minus=149	max_right_plus=141	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=8.193e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=81	side_1_possible_overlap_registers=293	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=4
JC	595	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=44	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=266	max_min_left=143	max_min_left_minus=143	max_min_left_plus=131	max_min_right=144	max_min_right_minus=144	max_min_right_plus=126	max_pos_hash_score=572	max_right=263	max_right_minus=260	max_right_plus=263	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.85	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=77
JC	596	.	NC_000913	2798062	-1	NC_000913	2798222	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.799e-02	junction_possible_overlap_registers=282	key=NC_000913__2798062__-1__NC_000913__2798211__1__11____300__300__0__0	max_left=145	max_left_minus=145	max_left_plus=58	max_min_left=140	max_min_left_minus=140	max_min_left_plus=58	max_min_right=144	max_min_right_minus=144	max_min_right_plus=0	max_pos_hash_score=566	max_right=243	max_right_minus=149	max_right_plus=243	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.799e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=11	side_1_possible_overlap_registers=293	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=4
JC	597	.	NC_000913	2877792	-1	NC_000913	2878283	1	0	alignment_overlap=19	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.646e-02	junction_possible_overlap_registers=274	key=NC_000913__2877792__-1__NC_000913__2878264__1__19____300__300__0__0	max_left=99	max_left_minus=99	max_left_plus=99	max_min_left=99	max_min_left_minus=99	max_min_left_plus=99	max_min_right=3	max_min_right_minus=0	max_min_right_plus=3	max_pos_hash_score=550	max_right=136	max_right_minus=136	max_right_plus=136	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=7.646e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=19	side_1_possible_overlap_registers=293	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=5
JC	598	.	NC_000913	2993231	1	NC_000913	3130146	1	0	alignment_overlap=0	coverage_minus=48	coverage_plus=88	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2993231__1__NC_000913__3130146__1__0____300__300__0__1	max_left=297	max_left_minus=282	max_left_plus=297	max_min_left=149	max_min_left_minus=148	max_min_left_plus=149	max_min_right=144	max_min_right_minus=144	max_min_right_plus=125	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=288	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.42	new_junction_read_count=138	polymorphism_frequency=1.000e+00	pos_hash_score=81	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=136
JC	599	.	NC_000913	3186096	1	NC_000913	3368685	1	0	alignment_overlap=1	coverage_minus=44	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__3186096__1__NC_000913__3368684__1__1____300__300__1__0	max_left=291	max_left_minus=291	max_left_plus=279	max_min_left=147	max_min_left_minus=134	max_min_left_plus=147	max_min_right=132	max_min_right_minus=132	max_min_right_plus=118	max_pos_hash_score=586	max_right=298	max_right_minus=290	max_right_plus=298	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.97	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=92
JC	600	.	NC_000913	3187426	-1	NC_000913	3368689	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3187426__-1__NC_000913__3368689__-1__0____300__300__1__0	max_left=297	max_left_minus=279	max_left_plus=297	max_min_left=141	max_min_left_minus=141	max_min_left_plus=139	max_min_right=143	max_min_right_minus=143	max_min_right_plus=142	max_pos_hash_score=588	max_right=297	max_right_minus=288	max_right_plus=297	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.94	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=80
JC	601	.	NC_000913	3270072	1	NC_000913	4137788	1	-25	alignment_overlap=-25	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.337e-02	junction_possible_overlap_registers=268	key=NC_000913__3270072__1__NC_000913__4137788__1__-25__CAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0	max_left=260	max_left_minus=260	max_left_plus=247	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=43	max_min_right_minus=43	max_min_right_plus=28	max_pos_hash_score=538	max_right=43	max_right_minus=43	max_right_plus=28	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.337e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=CAGATTGTTGAGTGCGCTTTATTCA
JC	602	.	NC_000913	3583428	1	NC_000913	4434629	1	0	alignment_overlap=0	coverage_minus=50	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3583428__1__NC_000913__4434629__1__0____300__300__1__0	max_left=293	max_left_minus=284	max_left_plus=293	max_min_left=147	max_min_left_minus=147	max_min_left_plus=142	max_min_right=147	max_min_right_minus=147	max_min_right_plus=128	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=100
JC	603	.	NC_000913	3583428	1	NC_000913	4542049	-1	0	alignment_overlap=1	coverage_minus=53	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__3583428__1__NC_000913__4542050__-1__1____300__300__1__0	max_left=298	max_left_minus=283	max_left_plus=298	max_min_left=147	max_min_left_minus=147	max_min_left_plus=129	max_min_right=147	max_min_right_minus=147	max_min_right_plus=125	max_pos_hash_score=586	max_right=297	max_right_minus=279	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.01	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97
JC	604	.	NC_000913	3584195	-1	NC_000913	4542042	1	0	alignment_overlap=0	coverage_minus=76	coverage_plus=66	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3584195__-1__NC_000913__4542042__1__0____300__300__1__0	max_left=287	max_left_minus=287	max_left_plus=285	max_min_left=149	max_min_left_minus=140	max_min_left_plus=149	max_min_right=138	max_min_right_minus=138	max_min_right_plus=133	max_pos_hash_score=588	max_right=297	max_right_minus=291	max_right_plus=297	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.47	new_junction_read_count=143	polymorphism_frequency=1.000e+00	pos_hash_score=82	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=142
JC	605	.	NC_000913	3648146	-1	NC_000913	3648378	1	0	alignment_overlap=58	coverage_minus=4	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.047e-01	junction_possible_overlap_registers=235	key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0	max_left=240	max_left_minus=240	max_left_plus=207	max_min_left=90	max_min_left_minus=83	max_min_left_plus=90	max_min_right=79	max_min_right_minus=30	max_min_right_plus=79	max_pos_hash_score=472	max_right=240	max_right_minus=159	max_right_plus=240	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.14	new_junction_read_count=11	polymorphism_frequency=1.047e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=58	side_1_possible_overlap_registers=293	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.33	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=11
JC	606	.	NC_000913	3648156	-1	NC_000913	3648388	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.457e-02	junction_possible_overlap_registers=288	key=NC_000913__3648156__-1__NC_000913__3648383__1__5____300__300__0__0	max_left=182	max_left_minus=182	max_left_plus=182	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=84	max_min_right_minus=84	max_min_right_plus=84	max_pos_hash_score=578	max_right=84	max_right_minus=84	max_right_plus=84	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.457e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=5	side_1_possible_overlap_registers=293	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.39	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=3
JC	607	.	NC_000913	4040810	1	NC_000913	4171849	-1	-7	alignment_overlap=-7	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=9.189e-02	junction_possible_overlap_registers=286	key=NC_000913__4040810__1__NC_000913__4171849__-1__-7__GCTAGAG__300__300__0__0	max_left=35	max_left_minus=35	max_left_plus=35	max_min_left=35	max_min_left_minus=35	max_min_left_plus=35	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=574	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=9.189e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GCTAGAG
JC	608	.	NC_000913	4120020	-1	NC_000913	4120210	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.792e-02	junction_possible_overlap_registers=284	key=NC_000913__4120020__-1__NC_000913__4120201__1__9____300__300__0__0	max_left=276	max_left_minus=276	max_left_plus=260	max_min_left=115	max_min_left_minus=0	max_min_left_plus=115	max_min_right=85	max_min_right_minus=85	max_min_right_plus=31	max_pos_hash_score=570	max_right=174	max_right_minus=85	max_right_plus=174	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.792e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=9	side_1_possible_overlap_registers=293	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=4
JC	609	.	NC_000913	4171849	-1	NC_000913	4171930	1	-7	alignment_overlap=-7	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.522e-01	junction_possible_overlap_registers=286	key=NC_000913__4171849__-1__NC_000913__4171930__1__-7__CTCTAGC__300__300__0__0	max_left=73	max_left_minus=73	max_left_plus=73	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=574	max_right=50	max_right_minus=50	max_right_plus=50	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.13	new_junction_read_count=12	polymorphism_frequency=1.522e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=CTCTAGC
JC	610	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.856e-02	junction_possible_overlap_registers=284	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=236	max_left_minus=236	max_left_plus=167	max_min_left=126	max_min_left_minus=0	max_min_left_plus=126	max_min_right=124	max_min_right_minus=89	max_min_right_plus=124	max_pos_hash_score=570	max_right=164	max_right_minus=89	max_right_plus=164	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=2.856e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.63	side_1_overlap=9	side_1_possible_overlap_registers=293	side_1_read_count=158	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.26	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=119	side_2_redundant=0	total_non_overlap_reads=4
UN	611	.	NC_000913	15663	16464
UN	612	.	NC_000913	20079	20285
UN	613	.	NC_000913	224014	224505
UN	614	.	NC_000913	225164	225325
UN	615	.	NC_000913	227273	228412
UN	616	.	NC_000913	257908	258683
UN	617	.	NC_000913	270798	270798
UN	618	.	NC_000913	270805	271004
UN	619	.	NC_000913	271006	271007
UN	620	.	NC_000913	271011	271011
UN	621	.	NC_000913	274248	274865
UN	622	.	NC_000913	279448	279654
UN	623	.	NC_000913	279657	279657
UN	624	.	NC_000913	290918	291129
UN	625	.	NC_000913	315510	316208
UN	626	.	NC_000913	366260	366273
UN	627	.	NC_000913	381546	382315
UN	628	.	NC_000913	382318	382318
UN	629	.	NC_000913	391974	391974
UN	630	.	NC_000913	391982	392690
UN	631	.	NC_000913	526122	526486
UN	632	.	NC_000913	565829	577187
UN	633	.	NC_000913	608264	608264
UN	634	.	NC_000913	608269	608270
UN	635	.	NC_000913	608272	608275
UN	636	.	NC_000913	608277	609107
UN	637	.	NC_000913	688131	688772
UN	638	.	NC_000913	1094495	1094495
UN	639	.	NC_000913	1094497	1095245
UN	640	.	NC_000913	1196374	1211413
UN	641	.	NC_000913	1299499	1300697
UN	642	.	NC_000913	1367750	1367925
UN	643	.	NC_000913	1396320	1396964
UN	644	.	NC_000913	1468165	1468165
UN	645	.	NC_000913	1468170	1468170
UN	646	.	NC_000913	1468176	1468177
UN	647	.	NC_000913	1468180	1468967
UN	648	.	NC_000913	1469558	1470228
UN	649	.	NC_000913	1528587	1528587
UN	650	.	NC_000913	1528589	1528590
UN	651	.	NC_000913	1528592	1528913
UN	652	.	NC_000913	1651113	1651298
UN	653	.	NC_000913	1978503	1979278
UN	654	.	NC_000913	2067003	2067003
UN	655	.	NC_000913	2067007	2067038
UN	656	.	NC_000913	2069196	2069989
UN	657	.	NC_000913	2102000	2102000
UN	658	.	NC_000913	2102002	2102665
UN	659	.	NC_000913	2102668	2102668
UN	660	.	NC_000913	2102672	2102672
UN	661	.	NC_000913	2170428	2170428
UN	662	.	NC_000913	2170449	2171135
UN	663	.	NC_000913	2171137	2171138
UN	664	.	NC_000913	2171140	2171141
UN	665	.	NC_000913	2289209	2289827
UN	666	.	NC_000913	2304617	2304633
UN	667	.	NC_000913	2304647	2304647
UN	668	.	NC_000913	2304653	2304653
UN	669	.	NC_000913	2304662	2304662
UN	670	.	NC_000913	2304668	2304668
UN	671	.	NC_000913	2514536	2514537
UN	672	.	NC_000913	2514539	2514541
UN	673	.	NC_000913	2514543	2515350
UN	674	.	NC_000913	2558699	2565488
UN	675	.	NC_000913	2726330	2729002
UN	676	.	NC_000913	2729834	2730718
UN	677	.	NC_000913	2730722	2730723
UN	678	.	NC_000913	2828353	2828353
UN	679	.	NC_000913	2996612	2996612
UN	680	.	NC_000913	2996614	2996614
UN	681	.	NC_000913	2996616	2997425
UN	682	.	NC_000913	3130419	3131070
UN	683	.	NC_000913	3131072	3131073
UN	684	.	NC_000913	3131075	3131083
UN	685	.	NC_000913	3186362	3187149
UN	686	.	NC_000913	3187153	3187154
UN	687	.	NC_000913	3365835	3366470
UN	688	.	NC_000913	3423940	3424391
UN	689	.	NC_000913	3424936	3426576
UN	690	.	NC_000913	3427206	3427206
UN	691	.	NC_000913	3427208	3428298
UN	692	.	NC_000913	3583691	3583693
UN	693	.	NC_000913	3583695	3583912
UN	694	.	NC_000913	3619529	3620844
UN	695	.	NC_000913	3620846	3620857
UN	696	.	NC_000913	3621329	3622066
UN	697	.	NC_000913	3622077	3622077
UN	698	.	NC_000913	3652303	3652953
UN	699	.	NC_000913	3762539	3762539
UN	700	.	NC_000913	3762541	3762541
UN	701	.	NC_000913	3762543	3763798
UN	702	.	NC_000913	3764327	3765017
UN	703	.	NC_000913	3765021	3765022
UN	704	.	NC_000913	3765029	3765030
UN	705	.	NC_000913	3765034	3765034
UN	706	.	NC_000913	3765037	3765037
UN	707	.	NC_000913	3765040	3765042
UN	708	.	NC_000913	3765044	3765045
UN	709	.	NC_000913	3942312	3942312
UN	710	.	NC_000913	3942316	3942317
UN	711	.	NC_000913	3942319	3943137
UN	712	.	NC_000913	3943141	3943142
UN	713	.	NC_000913	3943148	3943148
UN	714	.	NC_000913	3944331	3945286
UN	715	.	NC_000913	4035445	4036820
UN	716	.	NC_000913	4036822	4036822
UN	717	.	NC_000913	4036825	4036825
UN	718	.	NC_000913	4036851	4036851
UN	719	.	NC_000913	4038095	4038404
UN	720	.	NC_000913	4039011	4039098
UN	721	.	NC_000913	4039666	4039666
UN	722	.	NC_000913	4039668	4040315
UN	723	.	NC_000913	4166856	4166856
UN	724	.	NC_000913	4166931	4167941
UN	725	.	NC_000913	4167943	4167947
UN	726	.	NC_000913	4167949	4167949
UN	727	.	NC_000913	4167951	4167951
UN	728	.	NC_000913	4167953	4167954
UN	729	.	NC_000913	4167956	4167957
UN	730	.	NC_000913	4167959	4167959
UN	731	.	NC_000913	4167964	4167966
UN	732	.	NC_000913	4167969	4167969
UN	733	.	NC_000913	4167971	4167971
UN	734	.	NC_000913	4167973	4167973
UN	735	.	NC_000913	4167981	4167981
UN	736	.	NC_000913	4168847	4171407
UN	737	.	NC_000913	4171414	4171415
UN	738	.	NC_000913	4176833	4176833
UN	739	.	NC_000913	4176839	4176839
UN	740	.	NC_000913	4176846	4176846
UN	741	.	NC_000913	4176855	4176857
UN	742	.	NC_000913	4176864	4176864
UN	743	.	NC_000913	4208382	4209500
UN	744	.	NC_000913	4209502	4209502
UN	745	.	NC_000913	4210286	4212875
UN	746	.	NC_000913	4212877	4212877
UN	747	.	NC_000913	4212879	4212880
UN	748	.	NC_000913	4498460	4498460
UN	749	.	NC_000913	4498468	4498468
UN	750	.	NC_000913	4498470	4499265
UN	751	.	NC_000913	4507747	4508417
UN	752	.	NC_000913	4508419	4508419
UN	753	.	NC_000913	4508421	4508421
UN	754	.	NC_000913	4508424	4508425