#=GENOME_DIFF	1.0
#=CREATED	00:44:59 11 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9641_S37_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9641_S37_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9641_S37_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9641_S37_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9641_S37_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	433479142
#=CONVERTED-READS	1467658
#=INPUT-BASES	433565298
#=INPUT-READS	1467954
#=MAPPED-BASES	394721180
#=MAPPED-READS	1336338
SNP	1	136	NC_000913	3645	A
SNP	2	138	NC_000913	13947	T
SNP	3	139	NC_000913	53713	T
SNP	4	140	NC_000913	56144	G
SNP	5	141	NC_000913	57768	T
SNP	6	143	NC_000913	81102	A
SNP	7	144	NC_000913	124499	C
SNP	8	145	NC_000913	134058	T
SNP	9	146	NC_000913	134922	T
SNP	10	148	NC_000913	156068	G
SNP	11	149	NC_000913	156591	C
SNP	12	150	NC_000913	167798	A
SNP	13	151	NC_000913	196033	T
SNP	14	152	NC_000913	225750	A
SNP	15	153	NC_000913	229552	T
MOB	16	303,306	NC_000913	258921	IS1	1	9
SNP	17	154	NC_000913	284535	G
SNP	18	155	NC_000913	363282	T
SNP	19	156	NC_000913	365307	A
MOB	20	305,308	NC_000913	366068	IS1	1	8
DEL	21	296,311	NC_000913	680166	7685	mediated=IS5
SNP	22	158	NC_000913	696470	T
SNP	23	159	NC_000913	835360	T
SNP	24	161	NC_000913	1001251	C
SNP	25	165	NC_000913	1148972	T
SNP	26	166	NC_000913	1169836	G
SNP	27	167	NC_000913	1189980	G
SNP	28	169	NC_000913	1287040	A
DEL	29	297,326	NC_000913	1299499	1199
SNP	30	170	NC_000913	1301992	T
SNP	31	171	NC_000913	1306736	G
SNP	32	173	NC_000913	1336674	A
SNP	33	174	NC_000913	1337394	G
SNP	34	175	NC_000913	1339315	T
SNP	35	176	NC_000913	1358859	C
SNP	36	178	NC_000913	1448427	A
SNP	37	181	NC_000913	1556428	A
SNP	38	182	NC_000913	1600491	A
SNP	39	183	NC_000913	1643679	T
SNP	40	184	NC_000913	1652331	C
MOB	41	329,330	NC_000913	1733241	IS30	1	2
SNP	42	187	NC_000913	1756250	A
SNP	43	189	NC_000913	1829887	A
SNP	44	190	NC_000913	1894839	C
MOB	45	327,334	NC_000913	1979518	IS5	1	4
SNP	46	192	NC_000913	2040433	A
SNP	47	193	NC_000913	2042171	A
SNP	48	194	NC_000913	2044642	C
DEL	49	195	NC_000913	2111259	1
DEL	50	197,198	NC_000913	2173363	2
SNP	51	199	NC_000913	2173448	T
MOB	52	332,333	NC_000913	2177243	IS1	-1	9
MOB	53	335,336	NC_000913	2468298	IS3	1	3
DEL	54	298,341	NC_000913	2558699	6790
SNP	55	202	NC_000913	2587112	T
SNP	56	205	NC_000913	2867455	A
SNP	57	206	NC_000913	2926772	A
SNP	58	210	NC_000913	3152494	T
SNP	59	211	NC_000913	3160073	T
DEL	60	212	NC_000913	3207549	1
MOB	61	346,347	NC_000913	3267967	IS1	1	8
SNP	62	214	NC_000913	3293086	T
SNP	63	215	NC_000913	3329743	T
MOB	64	348,349	NC_000913	3350556	IS1	-1	8
SNP	65	216	NC_000913	3355505	T
SNP	66	217	NC_000913	3388041	G
MOB	67	309,321	NC_000913	3429986	IS3	-1	5	ins_end=T
SNP	68	218	NC_000913	3560443	G
INS	69	219	NC_000913	3560455	G
SNP	70	220	NC_000913	3666149	T
SNP	71	221	NC_000913	3676409	T
SNP	72	222	NC_000913	3677529	T
SNP	73	223	NC_000913	3677614	T
SNP	74	224	NC_000913	3707883	A
SNP	75	225	NC_000913	3707947	A
SNP	76	226	NC_000913	3725176	G
SNP	77	228	NC_000913	3756684	T
SNP	78	229	NC_000913	3757425	T
SNP	79	230	NC_000913	3760854	T
SNP	80	231	NC_000913	3773180	T
SNP	81	232	NC_000913	3781190	T
SNP	82	233	NC_000913	3786535	A
SNP	83	234	NC_000913	3786612	A
SNP	84	235	NC_000913	3787021	A
SNP	85	236	NC_000913	3804350	T
SNP	86	237	NC_000913	3809362	T
SNP	87	238	NC_000913	3814306	G
INS	88	239	NC_000913	3815883	C
SNP	89	240	NC_000913	3822274	A
SNP	90	241	NC_000913	3829931	T
SNP	91	242	NC_000913	3872926	T
SNP	92	244	NC_000913	3897929	T
SNP	93	245	NC_000913	3900536	A
SNP	94	246	NC_000913	3905813	T
SNP	95	248	NC_000913	3918717	T
SNP	96	249	NC_000913	3928064	T
SNP	97	250	NC_000913	3929487	A
SNP	98	251	NC_000913	3930350	A
SNP	99	253	NC_000913	4117408	T
SNP	100	254	NC_000913	4119000	T
SNP	101	255	NC_000913	4119288	T
SNP	102	257	NC_000913	4138814	A
SNP	103	258	NC_000913	4144951	T
SNP	104	259	NC_000913	4145392	T
SNP	105	260	NC_000913	4146248	A
SNP	106	261	NC_000913	4156917	C
SNP	107	262	NC_000913	4159997	T
SNP	108	263	NC_000913	4160765	A
SNP	109	264	NC_000913	4175817	T
SNP	110	265	NC_000913	4193996	G
SNP	111	266	NC_000913	4212959	C
DEL	112	267	NC_000913	4212973	1
SNP	113	268	NC_000913	4223638	C
SNP	114	269	NC_000913	4287464	A
SNP	115	270	NC_000913	4294266	C
INS	116	272,273	NC_000913	4296381	GC
SNP	117	274	NC_000913	4325644	T
SNP	118	276	NC_000913	4326428	A
SNP	119	277	NC_000913	4355470	G
SNP	120	280	NC_000913	4427149	T
SNP	121	281	NC_000913	4427694	T
SNP	122	282	NC_000913	4447516	T
SNP	123	283	NC_000913	4473900	T
SNP	124	284	NC_000913	4475493	C
SNP	125	285	NC_000913	4483872	T
SNP	126	286	NC_000913	4494833	T
SNP	127	287	NC_000913	4496519	T
SNP	128	288	NC_000913	4510238	G
MOB	129	351,352	NC_000913	4542042	IS1	1	8
SNP	130	289	NC_000913	4542295	G
DEL	131	290	NC_000913	4563778	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=G
SNP	132	291	NC_000913	4585480	A
SNP	133	292	NC_000913	4602509	T
SNP	134	293	NC_000913	4616669	T
SNP	135	294	NC_000913	4632081	T
RA	136	.	NC_000913	3645	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=191.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/24	major_frequency=9.836e-01	minor_base=C	minor_cov=1/0	new_cov=36/24	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=37/25
RA	137	.	NC_000913	12152	0	G	T	bias_e_value=396.05	bias_p_value=8.53251e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.6	fisher_strand_p_value=6.59978e-06	frequency=3.626e-01	ks_quality_p_value=1	major_base=G	major_cov=23/35	major_frequency=6.374e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=3.626e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=23/35	total_cov=23/68
RA	138	.	NC_000913	13947	0	C	T	consensus_score=322.1	frequency=1	major_base=T	major_cov=53/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/41
RA	139	.	NC_000913	53713	0	C	T	consensus_score=327.4	frequency=1	major_base=T	major_cov=49/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/47
RA	140	.	NC_000913	56144	0	A	G	consensus_score=293.7	frequency=1	major_base=G	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	141	.	NC_000913	57768	0	C	T	consensus_score=270.5	frequency=1	major_base=T	major_cov=29/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/47
RA	142	.	NC_000913	58065	0	C	A	bias_e_value=0.0167786	bias_p_value=3.6148e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.2	fisher_strand_p_value=1.53173e-10	frequency=3.441e-01	ks_quality_p_value=1	major_base=C	major_cov=22/39	major_frequency=6.559e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.441e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=22/39	total_cov=54/39
RA	143	.	NC_000913	81102	0	G	A	consensus_score=246.8	frequency=1	major_base=A	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	144	.	NC_000913	124499	0	A	C	bias_e_value=60038.9	bias_p_value=0.0129348	consensus_score=269.6	fisher_strand_p_value=0.00176191	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/50	major_frequency=9.195e-01	minor_base=A	minor_cov=7/0	new_cov=30/50	polymorphism_frequency=9.195e-01	polymorphism_score=NA	prediction=consensus	ref_cov=7/0	total_cov=37/50
RA	145	.	NC_000913	134058	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=334.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=68/22	major_frequency=9.890e-01	minor_base=C	minor_cov=1/0	new_cov=68/22	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=69/22
RA	146	.	NC_000913	134922	0	C	T	consensus_score=347.7	frequency=1	major_base=T	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	147	.	NC_000913	141849	0	C	A	bias_e_value=0.000468826	bias_p_value=1.01004e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.1	fisher_strand_p_value=3.69659e-12	frequency=2.137e-01	ks_quality_p_value=1	major_base=C	major_cov=32/71	major_frequency=7.863e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.137e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=32/71	total_cov=60/71
RA	148	.	NC_000913	156068	0	A	G	consensus_score=364.5	frequency=1	major_base=G	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	149	.	NC_000913	156591	0	T	C	consensus_score=366.9	frequency=1	major_base=C	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	150	.	NC_000913	167798	0	C	A	consensus_score=240.1	frequency=1	major_base=A	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	151	.	NC_000913	196033	0	G	T	consensus_score=323.6	frequency=1	major_base=T	major_cov=37/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/55
RA	152	.	NC_000913	225750	0	G	A	consensus_score=268.5	frequency=1	major_base=A	major_cov=31/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/68
RA	153	.	NC_000913	229552	0	C	T	consensus_score=439.5	frequency=1	major_base=T	major_cov=71/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/54
RA	154	.	NC_000913	284535	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=99.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=10/18	major_frequency=9.655e-01	minor_base=T	minor_cov=0/1	new_cov=10/18	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=10/19
RA	155	.	NC_000913	363282	0	G	T	bias_e_value=41405	bias_p_value=0.00892032	consensus_score=4154.4	fisher_strand_p_value=0.0011481	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=592/721	major_frequency=9.332e-01	minor_base=G	minor_cov=26/68	new_cov=592/721	polymorphism_frequency=9.332e-01	polymorphism_score=192.4	prediction=consensus	ref_cov=26/68	total_cov=622/790
RA	156	.	NC_000913	365307	0	G	A	bias_e_value=2218410	bias_p_value=0.477934	consensus_score=8579.4	fisher_strand_p_value=0.242288	frequency=1	ks_quality_p_value=0.717353	major_base=A	major_cov=1372/1142	major_frequency=9.707e-01	minor_base=G	minor_cov=47/29	new_cov=1372/1142	polymorphism_frequency=9.707e-01	polymorphism_score=134.8	prediction=consensus	ref_cov=47/29	total_cov=1430/1171
RA	157	.	NC_000913	590946	0	C	T	bias_e_value=3556.39	bias_p_value=0.00076619	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.4	fisher_strand_p_value=7.27755e-05	frequency=2.222e-01	ks_quality_p_value=1	major_base=C	major_cov=33/37	major_frequency=7.778e-01	minor_base=T	minor_cov=19/1	new_cov=19/1	polymorphism_frequency=2.222e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=33/37	total_cov=53/38
RA	158	.	NC_000913	696470	0	C	T	consensus_score=252.5	frequency=1	major_base=T	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	159	.	NC_000913	835360	0	C	T	consensus_score=261.6	frequency=1	major_base=T	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	160	.	NC_000913	847955	0	G	A	bias_e_value=13.8924	bias_p_value=2.993e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.3	fisher_strand_p_value=1.8113e-07	frequency=2.358e-01	ks_quality_p_value=1	major_base=G	major_cov=44/37	major_frequency=7.642e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.358e-01	polymorphism_score=27.2	prediction=polymorphism	ref_cov=44/37	total_cov=44/63
RA	161	.	NC_000913	1001251	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=211.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/28	major_frequency=9.828e-01	minor_base=T	minor_cov=1/0	new_cov=29/28	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/28
RA	162	.	NC_000913	1015488	0	C	A	bias_e_value=3.1422	bias_p_value=6.76958e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.7	fisher_strand_p_value=3.73976e-08	frequency=2.748e-01	ks_quality_p_value=1	major_base=C	major_cov=52/43	major_frequency=7.252e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.748e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=52/43	total_cov=88/43
RA	163	.	NC_000913	1097118	0	C	A	bias_e_value=4507660	bias_p_value=0.971133	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.7	fisher_strand_p_value=0.76955	frequency=2.459e-01	ks_quality_p_value=1	major_base=C	major_cov=19/27	major_frequency=7.541e-01	minor_base=A	minor_cov=7/8	new_cov=7/8	polymorphism_frequency=2.459e-01	polymorphism_score=25.7	prediction=polymorphism	ref_cov=19/27	total_cov=26/35
RA	164	.	NC_000913	1109632	0	G	A	bias_e_value=2.65065e-05	bias_p_value=5.71057e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.0	fisher_strand_p_value=1.88469e-13	frequency=2.344e-01	ks_quality_p_value=1	major_base=G	major_cov=70/28	major_frequency=7.656e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.344e-01	polymorphism_score=26.3	prediction=polymorphism	ref_cov=70/28	total_cov=70/58
RA	165	.	NC_000913	1148972	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=222.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/34	major_frequency=9.848e-01	minor_base=G	minor_cov=0/1	new_cov=31/34	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/35
RA	166	.	NC_000913	1169836	0	A	G	consensus_score=236.6	frequency=1	major_base=G	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	167	.	NC_000913	1189980	0	A	G	consensus_score=288.1	frequency=1	major_base=G	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	168	.	NC_000913	1197261	0	G	T	bias_e_value=6.8655	bias_p_value=1.47911e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=264.3	fisher_strand_p_value=8.563e-08	frequency=2.049e-01	ks_quality_p_value=1	major_base=G	major_cov=53/44	major_frequency=7.951e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.049e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=53/44	total_cov=53/69
RA	169	.	NC_000913	1287040	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=123.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/23	major_frequency=9.362e-01	minor_base=G	minor_cov=1/2	new_cov=21/23	polymorphism_frequency=9.362e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/2	total_cov=24/25
RA	170	.	NC_000913	1301992	0	A	T	consensus_score=227.7	frequency=1	major_base=T	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	171	.	NC_000913	1306736	0	T	G	consensus_score=326.4	frequency=1	major_base=G	major_cov=60/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/27
RA	172	.	NC_000913	1334966	0	A	C	bias_e_value=48.6417	bias_p_value=1.04794e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.2	fisher_strand_p_value=6.90047e-07	frequency=2.377e-01	ks_quality_p_value=1	major_base=A	major_cov=50/43	major_frequency=7.623e-01	minor_base=C	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.377e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=50/43	total_cov=79/43
RA	173	.	NC_000913	1336674	0	G	A	consensus_score=329.3	frequency=1	major_base=A	major_cov=44/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	174	.	NC_000913	1337394	0	A	G	bias_e_value=3865040	bias_p_value=0.832686	consensus_score=262.1	fisher_strand_p_value=0.480519	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=40/36	major_frequency=9.870e-01	minor_base=T	minor_cov=0/1	new_cov=40/36	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	175	.	NC_000913	1339315	0	C	T	bias_e_value=3735870	bias_p_value=0.804858	consensus_score=260.0	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/31	major_frequency=9.861e-01	minor_base=G	minor_cov=0/1	new_cov=40/31	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	176	.	NC_000913	1358859	0	T	C	consensus_score=335.2	frequency=1	major_base=C	major_cov=44/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/44
RA	177	.	NC_000913	1427992	0	G	T	bias_e_value=0.00167784	bias_p_value=3.61476e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.4	fisher_strand_p_value=1.39035e-11	frequency=4.301e-01	ks_quality_p_value=1	major_base=G	major_cov=33/20	major_frequency=5.699e-01	minor_base=T	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=4.301e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=33/20	total_cov=33/60
RA	178	.	NC_000913	1448427	0	G	A	consensus_score=319.0	frequency=1	major_base=A	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	179	.	NC_000913	1466438	0	T	G	bias_e_value=3917220	bias_p_value=0.843928	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.0	fisher_strand_p_value=0.496204	frequency=2.200e-01	ks_quality_p_value=1	major_base=T	major_cov=18/21	major_frequency=7.800e-01	minor_base=G	minor_cov=7/4	new_cov=7/4	polymorphism_frequency=2.200e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=18/21	total_cov=25/25
RA	180	.	NC_000913	1502770	0	T	C	bias_e_value=25.9364	bias_p_value=5.58775e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.1	fisher_strand_p_value=3.52347e-07	frequency=2.673e-01	ks_quality_p_value=1	major_base=T	major_cov=37/37	major_frequency=7.327e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.673e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=37/37	total_cov=37/65
RA	181	.	NC_000913	1556428	0	G	A	consensus_score=435.1	frequency=1	major_base=A	major_cov=58/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/64
RA	182	.	NC_000913	1600491	0	C	A	consensus_score=283.4	frequency=1	major_base=A	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	183	.	NC_000913	1643679	0	A	T	consensus_score=266.9	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	184	.	NC_000913	1652331	0	T	C	bias_e_value=3846970	bias_p_value=0.828793	consensus_score=384.6	fisher_strand_p_value=0.475248	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=47/53	major_frequency=9.901e-01	minor_base=A	minor_cov=1/0	new_cov=47/53	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	185	.	NC_000913	1657157	0	C	A	bias_e_value=0.00337127	bias_p_value=7.26308e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.6	fisher_strand_p_value=2.87387e-11	frequency=2.836e-01	ks_quality_p_value=1	major_base=C	major_cov=42/54	major_frequency=7.164e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.836e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=42/54	total_cov=80/54
RA	186	.	NC_000913	1708901	0	A	C	bias_e_value=4180170	bias_p_value=0.900578	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.0	fisher_strand_p_value=0.738829	frequency=2.000e-01	ks_quality_p_value=0.796703	major_base=A	major_cov=17/27	major_frequency=8.000e-01	minor_base=C	minor_cov=5/6	new_cov=5/6	polymorphism_frequency=2.000e-01	polymorphism_score=28.3	prediction=polymorphism	ref_cov=17/27	total_cov=22/35
RA	187	.	NC_000913	1756250	0	G	A	consensus_score=331.0	frequency=1	major_base=A	major_cov=55/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/39
RA	188	.	NC_000913	1812509	0	G	T	bias_e_value=0.00143928	bias_p_value=3.10079e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=269.6	fisher_strand_p_value=1.18539e-11	frequency=2.377e-01	ks_quality_p_value=1	major_base=G	major_cov=62/31	major_frequency=7.623e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.377e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=62/31	total_cov=63/60
RA	189	.	NC_000913	1829887	0	G	A	consensus_score=271.9	frequency=1	major_base=A	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	190	.	NC_000913	1894839	0	T	C	bias_e_value=3870890	bias_p_value=0.833946	consensus_score=320.1	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=0.998931	major_base=C	major_cov=41/45	major_frequency=9.885e-01	minor_base=.	minor_cov=1/0	new_cov=41/45	polymorphism_frequency=9.885e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	191	.	NC_000913	1922815	0	C	A	bias_e_value=147.475	bias_p_value=3.1772e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.3	fisher_strand_p_value=2.27013e-06	frequency=3.304e-01	ks_quality_p_value=1	major_base=C	major_cov=23/52	major_frequency=6.696e-01	minor_base=A	minor_cov=29/8	new_cov=29/8	polymorphism_frequency=3.304e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=23/52	total_cov=52/60
RA	192	.	NC_000913	2040433	0	C	A	consensus_score=220.9	frequency=1	major_base=A	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	193	.	NC_000913	2042171	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=397.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=69/49	major_frequency=9.916e-01	minor_base=G	minor_cov=1/0	new_cov=69/49	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=70/49
RA	194	.	NC_000913	2044642	0	T	C	bias_e_value=3633340	bias_p_value=0.782769	consensus_score=402.7	fisher_strand_p_value=0.418182	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=64/45	major_frequency=9.909e-01	minor_base=T	minor_cov=0/1	new_cov=64/45	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=64/46
RA	195	.	NC_000913	2111259	0	G	.	consensus_score=515.9	frequency=1	major_base=.	major_cov=45/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/62
RA	196	.	NC_000913	2159413	0	C	T	bias_e_value=37346.2	bias_p_value=0.00804588	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.8	fisher_strand_p_value=0.00102002	frequency=2.235e-01	ks_quality_p_value=1	major_base=C	major_cov=41/25	major_frequency=7.765e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.235e-01	polymorphism_score=19.3	prediction=polymorphism	ref_cov=41/25	total_cov=60/25
RA	197	.	NC_000913	2173363	0	C	.	consensus_score=351.2	frequency=1	major_base=.	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	198	.	NC_000913	2173364	0	C	.	consensus_score=351.2	frequency=1	major_base=.	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	199	.	NC_000913	2173448	0	C	T	consensus_score=225.1	frequency=1	major_base=T	major_cov=33/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/36
RA	200	.	NC_000913	2304798	0	T	C	bias_e_value=919659	bias_p_value=0.198132	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.0	fisher_strand_p_value=0.0494487	frequency=3.125e-01	ks_quality_p_value=1	major_base=T	major_cov=16/6	major_frequency=6.875e-01	minor_base=C	minor_cov=3/7	new_cov=3/7	polymorphism_frequency=3.125e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=16/6	total_cov=19/13
RA	201	.	NC_000913	2477265	0	A	C	bias_e_value=0.000392241	bias_p_value=8.45046e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.1	fisher_strand_p_value=3.07192e-12	frequency=3.000e-01	ks_quality_p_value=1	major_base=A	major_cov=7/42	major_frequency=7.000e-01	minor_base=C	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.000e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=7/42	total_cov=28/43
RA	202	.	NC_000913	2587112	0	C	T	consensus_score=240.6	frequency=1	major_base=T	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	203	.	NC_000913	2722838	0	G	T	bias_e_value=0.000328765	bias_p_value=7.08294e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.3	fisher_strand_p_value=2.55777e-12	frequency=3.178e-01	ks_quality_p_value=1	major_base=G	major_cov=49/24	major_frequency=6.822e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.178e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=49/24	total_cov=49/58
RA	204	.	NC_000913	2767445	0	C	A	bias_e_value=5.54434e-11	bias_p_value=1.19448e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.7	fisher_strand_p_value=2.73057e-19	frequency=2.784e-01	ks_quality_p_value=1	major_base=C	major_cov=5/65	major_frequency=7.216e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.784e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=5/65	total_cov=33/65
RA	205	.	NC_000913	2867455	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=439.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=74/55	major_frequency=9.923e-01	minor_base=C	minor_cov=1/0	new_cov=74/55	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=75/56
RA	206	.	NC_000913	2926772	0	C	A	consensus_score=230.5	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	207	.	NC_000913	2990480	0	C	A	bias_e_value=0.0460339	bias_p_value=9.91756e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.4	fisher_strand_p_value=4.39911e-10	frequency=2.880e-01	ks_quality_p_value=1	major_base=C	major_cov=41/48	major_frequency=7.120e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.880e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=41/48	total_cov=77/49
RA	208	.	NC_000913	3032307	0	C	T	bias_e_value=0.00487761	bias_p_value=1.05084e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.9	fisher_strand_p_value=4.22224e-11	frequency=2.841e-01	ks_quality_p_value=1	major_base=C	major_cov=17/46	major_frequency=7.159e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.841e-01	polymorphism_score=26.9	prediction=polymorphism	ref_cov=17/46	total_cov=42/46
RA	209	.	NC_000913	3054894	0	G	T	bias_e_value=110.584	bias_p_value=2.38243e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.9	fisher_strand_p_value=1.6654e-06	frequency=2.778e-01	ks_quality_p_value=1	major_base=G	major_cov=14/38	major_frequency=7.222e-01	minor_base=T	minor_cov=18/2	new_cov=18/2	polymorphism_frequency=2.778e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=14/38	total_cov=32/40
RA	210	.	NC_000913	3152494	0	G	T	consensus_score=305.8	frequency=1	major_base=T	major_cov=49/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/39
RA	211	.	NC_000913	3160073	0	C	T	consensus_score=248.5	frequency=1	major_base=T	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	212	.	NC_000913	3207549	0	G	.	bias_e_value=4641650	bias_p_value=1	consensus_score=507.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=54/53	major_frequency=9.907e-01	minor_base=G	minor_cov=0/1	new_cov=54/53	polymorphism_frequency=9.907e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=54/54
RA	213	.	NC_000913	3267978	0	C	A	bias_e_value=2333.01	bias_p_value=0.000502626	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.2	fisher_strand_p_value=4.57227e-05	frequency=2.396e-01	ks_quality_p_value=1	major_base=C	major_cov=37/36	major_frequency=7.604e-01	minor_base=A	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.396e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=37/36	total_cov=38/58
RA	214	.	NC_000913	3293086	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=266.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/33	major_frequency=9.740e-01	minor_base=C	minor_cov=1/1	new_cov=42/33	polymorphism_frequency=9.740e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=43/34
RA	215	.	NC_000913	3329743	0	G	T	consensus_score=199.0	frequency=1	major_base=T	major_cov=28/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/34
RA	216	.	NC_000913	3355505	0	C	T	consensus_score=230.2	frequency=1	major_base=T	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	217	.	NC_000913	3388041	0	T	G	consensus_score=278.4	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	218	.	NC_000913	3560443	0	C	G	consensus_score=331.0	frequency=1	major_base=G	major_cov=36/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/54
RA	219	.	NC_000913	3560455	1	.	G	consensus_score=344.5	frequency=1	major_base=G	major_cov=36/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/58
RA	220	.	NC_000913	3666149	0	C	T	bias_e_value=3999490	bias_p_value=0.861652	consensus_score=277.7	fisher_strand_p_value=0.522472	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/53	major_frequency=9.775e-01	minor_base=G	minor_cov=0/2	new_cov=34/53	polymorphism_frequency=9.775e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/55
RA	221	.	NC_000913	3676409	0	C	T	consensus_score=204.7	frequency=1	major_base=T	major_cov=31/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	222	.	NC_000913	3677529	0	C	T	consensus_score=227.0	frequency=1	major_base=T	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	223	.	NC_000913	3677614	0	C	T	consensus_score=247.2	frequency=1	major_base=T	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	224	.	NC_000913	3707883	0	G	A	bias_e_value=4025160	bias_p_value=0.867183	consensus_score=435.2	fisher_strand_p_value=0.5311	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=82/49	major_frequency=9.850e-01	minor_base=C	minor_cov=2/0	new_cov=82/49	polymorphism_frequency=9.850e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=84/49
RA	225	.	NC_000913	3707947	0	C	A	consensus_score=430.9	frequency=1	major_base=A	major_cov=76/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/50
RA	226	.	NC_000913	3725176	0	T	G	consensus_score=332.0	frequency=1	major_base=G	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	227	.	NC_000913	3741871	0	G	T	bias_e_value=4.76707	bias_p_value=1.02702e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.2	fisher_strand_p_value=5.81547e-08	frequency=3.043e-01	ks_quality_p_value=1	major_base=G	major_cov=35/29	major_frequency=6.957e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.043e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=35/29	total_cov=35/57
RA	228	.	NC_000913	3756684	0	C	T	consensus_score=256.7	frequency=1	major_base=T	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	229	.	NC_000913	3757425	0	C	T	consensus_score=266.8	frequency=1	major_base=T	major_cov=33/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/44
RA	230	.	NC_000913	3760854	0	C	T	consensus_score=195.8	frequency=1	major_base=T	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	231	.	NC_000913	3773180	0	C	T	consensus_score=384.9	frequency=1	major_base=T	major_cov=69/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/45
RA	232	.	NC_000913	3781190	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=230.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/36	major_frequency=9.851e-01	minor_base=C	minor_cov=0/1	new_cov=30/36	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/37
RA	233	.	NC_000913	3786535	0	G	A	consensus_score=214.1	frequency=1	major_base=A	major_cov=22/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/40
RA	234	.	NC_000913	3786612	0	G	A	consensus_score=238.5	frequency=1	major_base=A	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	235	.	NC_000913	3787021	0	G	A	consensus_score=187.4	frequency=1	major_base=A	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	236	.	NC_000913	3804350	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=336.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/49	major_frequency=9.892e-01	minor_base=G	minor_cov=0/1	new_cov=43/49	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/50
RA	237	.	NC_000913	3809362	0	C	T	consensus_score=295.1	frequency=1	major_base=T	major_cov=41/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	238	.	NC_000913	3814306	0	A	G	consensus_score=277.8	frequency=1	major_base=G	major_cov=51/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/21
RA	239	.	NC_000913	3815883	1	.	C	bias_e_value=2752460	bias_p_value=0.592992	consensus_score=340.3	fisher_strand_p_value=0.247426	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=48/43	major_frequency=9.681e-01	minor_base=.	minor_cov=3/0	new_cov=48/43	polymorphism_frequency=9.681e-01	polymorphism_score=2.1	prediction=consensus	ref_cov=3/0	total_cov=51/43
RA	240	.	NC_000913	3822274	0	G	A	consensus_score=315.5	frequency=1	major_base=A	major_cov=40/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	241	.	NC_000913	3829931	0	C	T	consensus_score=246.1	frequency=1	major_base=T	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	242	.	NC_000913	3872926	0	C	T	bias_e_value=3904480	bias_p_value=0.841182	consensus_score=220.5	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/31	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=33/31	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	243	.	NC_000913	3896780	0	C	A	bias_e_value=0.130697	bias_p_value=2.81573e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.0	fisher_strand_p_value=1.31262e-09	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=26/44	major_frequency=7.143e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.857e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=26/44	total_cov=54/44
RA	244	.	NC_000913	3897929	0	C	T	bias_e_value=3720440	bias_p_value=0.801533	consensus_score=389.3	fisher_strand_p_value=0.440367	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/61	major_frequency=9.908e-01	minor_base=C	minor_cov=1/0	new_cov=47/61	polymorphism_frequency=9.908e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=1/0	total_cov=48/61
RA	245	.	NC_000913	3900536	0	G	A	consensus_score=319.6	frequency=1	major_base=A	major_cov=53/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/35
RA	246	.	NC_000913	3905813	0	C	T	consensus_score=375.4	frequency=1	major_base=T	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	247	.	NC_000913	3911533	0	C	A	bias_e_value=0.231338	bias_p_value=4.98396e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.8	fisher_strand_p_value=2.39017e-09	frequency=3.936e-01	ks_quality_p_value=1	major_base=C	major_cov=26/31	major_frequency=6.064e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.936e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=26/31	total_cov=63/31
RA	248	.	NC_000913	3918717	0	C	T	consensus_score=244.5	frequency=1	major_base=T	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	249	.	NC_000913	3928064	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=201.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/27	major_frequency=9.831e-01	minor_base=G	minor_cov=1/0	new_cov=31/27	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	250	.	NC_000913	3929487	0	G	A	bias_e_value=3467970	bias_p_value=0.747142	consensus_score=256.1	fisher_strand_p_value=0.381579	frequency=1	ks_quality_p_value=0.994402	major_base=A	major_cov=47/28	major_frequency=9.868e-01	minor_base=G	minor_cov=0/1	new_cov=47/28	polymorphism_frequency=9.868e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=47/29
RA	251	.	NC_000913	3930350	0	G	A	consensus_score=319.0	frequency=1	major_base=A	major_cov=38/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/49
RA	252	.	NC_000913	4100801	0	G	T	bias_e_value=567.985	bias_p_value=0.000122367	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.1	fisher_strand_p_value=9.76032e-06	frequency=2.903e-01	ks_quality_p_value=1	major_base=G	major_cov=28/38	major_frequency=7.097e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.903e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=28/38	total_cov=28/65
RA	253	.	NC_000913	4117408	0	C	T	consensus_score=296.8	frequency=1	major_base=T	major_cov=30/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/57
RA	254	.	NC_000913	4119000	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=300.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/38	major_frequency=9.884e-01	minor_base=C	minor_cov=1/0	new_cov=47/38	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/38
RA	255	.	NC_000913	4119288	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=371.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=58/56	major_frequency=9.828e-01	minor_base=C	minor_cov=1/1	new_cov=58/56	polymorphism_frequency=9.828e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/1	total_cov=59/57
RA	256	.	NC_000913	4136467	0	A	C	bias_e_value=43.4506	bias_p_value=9.36102e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.1	fisher_strand_p_value=6.1154e-07	frequency=2.877e-01	ks_quality_p_value=1	major_base=A	major_cov=21/31	major_frequency=7.123e-01	minor_base=C	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.877e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=21/31	total_cov=44/31
RA	257	.	NC_000913	4138814	0	G	A	consensus_score=325.7	frequency=1	major_base=A	major_cov=51/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	258	.	NC_000913	4144951	0	C	T	consensus_score=193.5	frequency=1	major_base=T	major_cov=35/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/22
RA	259	.	NC_000913	4145392	0	C	T	consensus_score=324.6	frequency=1	major_base=T	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	260	.	NC_000913	4146248	0	G	A	consensus_score=228.9	frequency=1	major_base=A	major_cov=39/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/27
RA	261	.	NC_000913	4156917	0	T	C	consensus_score=275.3	frequency=1	major_base=C	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	262	.	NC_000913	4159997	0	A	T	consensus_score=271.6	frequency=1	major_base=T	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	263	.	NC_000913	4160765	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=259.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=39/36	major_frequency=9.868e-01	minor_base=C	minor_cov=1/0	new_cov=39/36	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	264	.	NC_000913	4175817	0	C	T	bias_e_value=3407310	bias_p_value=0.734073	consensus_score=238.7	fisher_strand_p_value=0.366197	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/25	major_frequency=9.859e-01	minor_base=G	minor_cov=0/1	new_cov=45/25	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/26
RA	265	.	NC_000913	4193996	0	T	G	consensus_score=208.9	frequency=1	major_base=G	major_cov=27/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	266	.	NC_000913	4212959	0	G	C	consensus_score=60.2	frequency=1	major_base=C	major_cov=14/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/5
RA	267	.	NC_000913	4212973	0	T	.	consensus_score=88.3	frequency=1	major_base=.	major_cov=14/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/8
RA	268	.	NC_000913	4223638	0	T	C	consensus_score=339.2	frequency=1	major_base=C	major_cov=45/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/47
RA	269	.	NC_000913	4287464	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=365.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/51	major_frequency=9.905e-01	minor_base=C	minor_cov=1/0	new_cov=53/51	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/51
RA	270	.	NC_000913	4294266	0	T	C	bias_e_value=2527570	bias_p_value=0.544541	consensus_score=476.2	fisher_strand_p_value=0.21439	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=58/69	major_frequency=9.845e-01	minor_base=T	minor_cov=2/0	new_cov=58/69	polymorphism_frequency=9.845e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=60/69
RA	271	.	NC_000913	4296268	0	T	C	bias_e_value=4327350	bias_p_value=0.932287	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.4	fisher_strand_p_value=0.655338	frequency=2.250e-01	ks_quality_p_value=1	major_base=T	major_cov=24/7	major_frequency=7.750e-01	minor_base=C	minor_cov=8/1	new_cov=8/1	polymorphism_frequency=2.250e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=24/7	total_cov=32/8
RA	272	.	NC_000913	4296380	1	.	C	bias_e_value=3213370	bias_p_value=0.692289	consensus_score=193.8	fisher_strand_p_value=0.327586	frequency=1	ks_quality_p_value=0.997583	major_base=C	major_cov=39/18	major_frequency=9.828e-01	minor_base=T	minor_cov=0/1	new_cov=39/18	polymorphism_frequency=9.828e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=40/19
RA	273	.	NC_000913	4296380	2	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=198.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=39/18	major_frequency=9.828e-01	minor_base=.	minor_cov=1/0	new_cov=39/18	polymorphism_frequency=9.828e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=40/18
RA	274	.	NC_000913	4325644	0	C	T	consensus_score=183.0	frequency=1	major_base=T	major_cov=17/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/40
RA	275	.	NC_000913	4325948	0	A	G	bias_e_value=3082860	bias_p_value=0.664174	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.9	fisher_strand_p_value=0.433148	frequency=2.581e-01	ks_quality_p_value=0.698342	major_base=A	major_cov=10/13	major_frequency=7.419e-01	minor_base=G	minor_cov=5/3	new_cov=5/3	polymorphism_frequency=2.581e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=10/13	total_cov=15/16
RA	276	.	NC_000913	4326428	0	G	A	consensus_score=165.9	frequency=1	major_base=A	major_cov=24/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/25
RA	277	.	NC_000913	4355470	0	A	G	bias_e_value=1974590	bias_p_value=0.425406	consensus_score=253.2	fisher_strand_p_value=0.167568	frequency=1	ks_quality_p_value=0.866584	major_base=G	major_cov=44/29	major_frequency=9.733e-01	minor_base=A	minor_cov=0/2	new_cov=44/29	polymorphism_frequency=9.733e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=0/2	total_cov=44/31
RA	278	.	NC_000913	4360965	0	C	A	bias_e_value=0.00079077	bias_p_value=1.70364e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.1	fisher_strand_p_value=6.36143e-12	frequency=2.710e-01	ks_quality_p_value=1	major_base=C	major_cov=24/54	major_frequency=7.290e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.710e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=24/54	total_cov=53/55
RA	279	.	NC_000913	4406302	0	C	A	bias_e_value=0.0124431	bias_p_value=2.68074e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.2	fisher_strand_p_value=1.12111e-10	frequency=2.427e-01	ks_quality_p_value=1	major_base=C	major_cov=24/54	major_frequency=7.573e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.427e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=24/54	total_cov=49/54
RA	280	.	NC_000913	4427149	0	C	T	consensus_score=289.8	frequency=1	major_base=T	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	281	.	NC_000913	4427694	0	C	T	consensus_score=433.1	frequency=1	major_base=T	major_cov=70/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/47
RA	282	.	NC_000913	4447516	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=374.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/56	major_frequency=9.904e-01	minor_base=G	minor_cov=0/1	new_cov=47/56	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/57
RA	283	.	NC_000913	4473900	0	C	T	consensus_score=260.1	frequency=1	major_base=T	major_cov=46/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/29
RA	284	.	NC_000913	4475493	0	T	C	bias_e_value=2715030	bias_p_value=0.584928	consensus_score=554.5	fisher_strand_p_value=0.2417	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=72/76	major_frequency=9.867e-01	minor_base=A	minor_cov=2/0	new_cov=72/76	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/76
RA	285	.	NC_000913	4483872	0	C	T	consensus_score=341.4	frequency=1	major_base=T	major_cov=58/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/36
RA	286	.	NC_000913	4494833	0	C	T	consensus_score=382.4	frequency=1	major_base=T	major_cov=54/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/56
RA	287	.	NC_000913	4496519	0	C	T	consensus_score=279.5	frequency=1	major_base=T	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	288	.	NC_000913	4510238	0	T	G	bias_e_value=1554280	bias_p_value=0.334856	consensus_score=358.5	fisher_strand_p_value=0.102005	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=57/48	major_frequency=9.722e-01	minor_base=T	minor_cov=0/3	new_cov=57/48	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=57/51
RA	289	.	NC_000913	4542295	0	A	G	consensus_score=293.0	frequency=1	major_base=G	major_cov=27/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/50
RA	290	.	NC_000913	4563778	0	G	.	bias_e_value=340898	bias_p_value=0.0734432	consensus_score=351.0	fisher_strand_p_value=0.0139535	frequency=1	ks_quality_p_value=0.997991	major_base=.	major_cov=40/40	major_frequency=9.195e-01	minor_base=G	minor_cov=7/0	new_cov=40/40	polymorphism_frequency=9.195e-01	polymorphism_score=21.5	prediction=consensus	ref_cov=7/0	total_cov=47/40
RA	291	.	NC_000913	4585480	0	G	A	consensus_score=229.4	frequency=1	major_base=A	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	292	.	NC_000913	4602509	0	C	T	consensus_score=262.3	frequency=1	major_base=T	major_cov=31/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	293	.	NC_000913	4616669	0	G	T	consensus_score=268.3	frequency=1	major_base=T	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	294	.	NC_000913	4632081	0	C	T	consensus_score=236.9	frequency=1	major_base=T	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
MC	295	.	NC_000913	323451	362203	0	0	left_inside_cov=0	left_outside_cov=71	right_inside_cov=0	right_outside_cov=110
MC	296	.	NC_000913	680166	688825	0	979	left_inside_cov=0	left_outside_cov=93	right_inside_cov=27	right_outside_cov=28
MC	297	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=120	right_inside_cov=1	right_outside_cov=121
MC	298	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=58	right_inside_cov=0	right_outside_cov=58
MC	299	.	NC_000913	3423733	3424486	499	248	left_inside_cov=27	left_outside_cov=29	right_inside_cov=26	right_outside_cov=29
JC	300	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=76	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=297	max_left_minus=297	max_left_plus=272	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=148	max_min_right_minus=144	max_min_right_plus=148	max_pos_hash_score=588	max_right=298	max_right_minus=277	max_right_plus=298	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.60	new_junction_read_count=138	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=135
JC	301	.	NC_000913	215228	-1	NC_000913	215618	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.774e-02	junction_possible_overlap_registers=282	key=NC_000913__215228__-1__NC_000913__215606__1__12____300__300__0__0	max_left=139	max_left_minus=139	max_left_plus=139	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=54	max_min_right_minus=54	max_min_right_plus=54	max_pos_hash_score=564	max_right=186	max_right_minus=54	max_right_plus=186	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.774e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=4
JC	302	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=49	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=287	max_left_minus=273	max_left_plus=287	max_min_left=135	max_min_left_minus=104	max_min_left_plus=135	max_min_right=144	max_min_right_minus=143	max_min_right_plus=144	max_pos_hash_score=572	max_right=245	max_right_minus=245	max_right_plus=229	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=97	polymorphism_frequency=9.477e-01	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.13	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=91
JC	303	.	NC_000913	257908	1	NC_000913	258921	1	0	alignment_overlap=0	coverage_minus=60	coverage_plus=18	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__257908__1__NC_000913__258921__1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=161	max_min_left=139	max_min_left_minus=139	max_min_left_plus=101	max_min_right=146	max_min_right_minus=139	max_min_right_plus=146	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=296	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.95	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=78
JC	304	.	NC_000913	257908	1	NC_000913	323450	-1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=26	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__257908__1__NC_000913__323450__-1__0____300__300__1__0	max_left=287	max_left_minus=287	max_left_plus=274	max_min_left=149	max_min_left_minus=149	max_min_left_plus=145	max_min_right=149	max_min_right_minus=139	max_min_right_plus=149	max_pos_hash_score=588	max_right=295	max_right_minus=286	max_right_plus=295	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.83	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68
JC	305	.	NC_000913	257908	1	NC_000913	366068	1	0	alignment_overlap=0	coverage_minus=1058	coverage_plus=696	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__257908__1__NC_000913__366068__1__0____300__300__1__0	max_left=296	max_left_minus=294	max_left_plus=296	max_min_left=149	max_min_left_minus=149	max_min_left_plus=149	max_min_right=149	max_min_right_minus=149	max_min_right_plus=149	max_pos_hash_score=588	max_right=213	max_right_minus=213	max_right_plus=212	neg_log10_pos_hash_p_value=-0.0	new_junction_coverage=22.13	new_junction_read_count=1904	polymorphism_frequency=8.257e-01	pos_hash_score=247	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.67	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=391	side_2_redundant=0	total_non_overlap_reads=1754
JC	306	.	NC_000913	258675	-1	NC_000913	258929	-1	0	alignment_overlap=0	coverage_minus=45	coverage_plus=14	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__258675__-1__NC_000913__258929__-1__0____300__300__1__0	max_left=277	max_left_minus=277	max_left_plus=264	max_min_left=149	max_min_left_minus=148	max_min_left_plus=149	max_min_right=142	max_min_right_minus=142	max_min_right_plus=111	max_pos_hash_score=588	max_right=254	max_right_minus=254	max_right_plus=251	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.74	new_junction_read_count=64	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=59
JC	307	.	NC_000913	258675	-1	NC_000913	362204	1	0	alignment_overlap=0	coverage_minus=67	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__258675__-1__NC_000913__362204__1__0____300__300__1__0	max_left=291	max_left_minus=291	max_left_plus=291	max_min_left=148	max_min_left_minus=148	max_min_left_plus=146	max_min_right=148	max_min_right_minus=148	max_min_right_plus=139	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.28	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103
JC	308	.	NC_000913	258675	-1	NC_000913	366075	-1	0	alignment_overlap=0	coverage_minus=1200	coverage_plus=1090	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__258675__-1__NC_000913__366075__-1__0____300__300__1__0	max_left=296	max_left_minus=296	max_left_plus=296	max_min_left=149	max_min_left_minus=148	max_min_left_plus=149	max_min_right=149	max_min_right_minus=149	max_min_right_plus=148	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=295	neg_log10_pos_hash_p_value=-0.0	new_junction_coverage=27.66	new_junction_read_count=2380	polymorphism_frequency=8.555e-01	pos_hash_score=323	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.67	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=391	side_2_redundant=0	total_non_overlap_reads=2290
JC	309	.	NC_000913	315229	1	NC_000913	3429986	1	-1	alignment_overlap=-1	coverage_minus=45	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__315229__1__NC_000913__3429986__1__-1__T__300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=263	max_min_left=139	max_min_left_minus=139	max_min_left_plus=133	max_min_right=149	max_min_right_minus=149	max_min_right_plus=144	max_pos_hash_score=586	max_right=295	max_right_minus=280	max_right_plus=295	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.07	new_junction_read_count=92	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=92	unique_read_sequence=T
JC	310	.	NC_000913	366068	1	NC_000913	1050545	-1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=1.307e-02	junction_possible_overlap_registers=292	key=NC_000913__366068__1__NC_000913__1050547__-1__2____300__300__0__0	max_left=154	max_left_minus=154	max_left_plus=33	max_min_left=111	max_min_left_minus=111	max_min_left_plus=33	max_min_right=144	max_min_right_minus=144	max_min_right_plus=0	max_pos_hash_score=584	max_right=265	max_right_minus=187	max_right_plus=265	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=1.307e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=5.30	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=456	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=3
JC	311	.	NC_000913	680165	-1	NC_000913	687851	1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__680165__-1__NC_000913__687851__1__0____300__300__0__1	max_left=297	max_left_minus=287	max_left_plus=297	max_min_left=145	max_min_left_minus=131	max_min_left_plus=145	max_min_right=148	max_min_right_minus=148	max_min_right_plus=132	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=283	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.08	new_junction_read_count=93	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=91
JC	312	.	NC_000913	696456	-1	NC_000913	696784	1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.612e-02	junction_possible_overlap_registers=293	key=NC_000913__696456__-1__NC_000913__696784__1__-1__C__300__300__0__0	max_left=187	max_left_minus=187	max_left_plus=143	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=100	max_min_right_minus=100	max_min_right_plus=100	max_pos_hash_score=586	max_right=100	max_right_minus=100	max_right_plus=100	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.612e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=C
JC	313	.	NC_000913	696469	-1	NC_000913	696802	1	-6	alignment_overlap=-6	coverage_minus=7	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.787e-01	junction_possible_overlap_registers=288	key=NC_000913__696469__-1__NC_000913__696802__1__-6__TAGAAT__300__300__0__0	max_left=291	max_left_minus=291	max_left_plus=282	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=95	max_min_right_minus=95	max_min_right_plus=95	max_pos_hash_score=576	max_right=278	max_right_minus=95	max_right_plus=278	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.15	new_junction_read_count=13	polymorphism_frequency=1.787e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=10	unique_read_sequence=TAGAAT
JC	314	.	NC_000913	696567	-1	NC_000913	696690	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.516e-02	junction_possible_overlap_registers=282	key=NC_000913__696567__-1__NC_000913__696678__1__12____300__300__0__0	max_left=75	max_left_minus=41	max_left_plus=75	max_min_left=75	max_min_left_minus=0	max_min_left_plus=75	max_min_right=34	max_min_right_minus=20	max_min_right_plus=34	max_pos_hash_score=564	max_right=181	max_right_minus=20	max_right_plus=181	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.516e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=4
JC	315	.	NC_000913	696567	-1	NC_000913	697083	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.347e-02	junction_possible_overlap_registers=282	key=NC_000913__696567__-1__NC_000913__697071__1__12____300__300__0__0	max_left=56	max_left_minus=41	max_left_plus=56	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=34	max_min_right_minus=20	max_min_right_plus=34	max_pos_hash_score=564	max_right=34	max_right_minus=20	max_right_plus=34	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.347e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=3
JC	316	.	NC_000913	781016	-1	NC_000913	781809	1	0	alignment_overlap=37	coverage_minus=4	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=7.129e-02	junction_possible_overlap_registers=257	key=NC_000913__781016__-1__NC_000913__781772__1__37____300__300__0__0	max_left=258	max_left_minus=258	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_pos_hash_score=514	max_right=2	max_right_minus=2	max_right_plus=0	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=7.129e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=37	side_1_possible_overlap_registers=294	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=257	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=4
JC	317	.	NC_000913	781222	-1	NC_000913	781653	1	0	alignment_overlap=76	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.127e-01	junction_possible_overlap_registers=218	key=NC_000913__781222__-1__NC_000913__781577__1__76____300__300__0__0	max_left=174	max_left_minus=174	max_left_plus=104	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=96	max_min_right_minus=96	max_min_right_plus=96	max_pos_hash_score=436	max_right=147	max_right_minus=96	max_right_plus=147	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.09	new_junction_read_count=6	polymorphism_frequency=1.127e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=6
JC	318	.	NC_000913	781322	-1	NC_000913	781811	1	0	alignment_overlap=39	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.443e-02	junction_possible_overlap_registers=255	key=NC_000913__781322__-1__NC_000913__781772__1__39____300__300__0__0	max_left=133	max_left_minus=133	max_left_plus=133	max_min_left=17	max_min_left_minus=17	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=96	max_pos_hash_score=510	max_right=96	max_right_minus=96	max_right_plus=96	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.443e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=39	side_1_possible_overlap_registers=294	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=255	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=3
JC	319	.	NC_000913	781446	-1	NC_000913	781655	1	0	alignment_overlap=78	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=7.536e-02	junction_possible_overlap_registers=216	key=NC_000913__781446__-1__NC_000913__781577__1__78____300__300__0__0	max_left=146	max_left_minus=146	max_left_plus=82	max_min_left=102	max_min_left_minus=102	max_min_left_plus=82	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=432	max_right=217	max_right_minus=217	max_right_plus=140	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=7.536e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=4
JC	320	.	NC_000913	781577	1	NC_000913	2521006	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.513e-02	junction_possible_overlap_registers=290	key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0	max_left=114	max_left_minus=70	max_left_plus=114	max_min_left=114	max_min_left_minus=70	max_min_left_plus=114	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=580	max_right=269	max_right_minus=78	max_right_plus=269	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.513e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GAAG
JC	321	.	NC_000913	1094245	1	NC_000913	3429990	-1	0	alignment_overlap=1	coverage_minus=49	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1094245__1__NC_000913__3429991__-1__1____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=295	max_min_left=147	max_min_left_minus=128	max_min_left_plus=147	max_min_right=130	max_min_right_minus=130	max_min_right_plus=118	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=281	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.99	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	322	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=33	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=6.641e-01	junction_possible_overlap_registers=278	key=NC_000913__1207790__1__NC_000913__1209603__1__16____300__300__0__0	max_left=263	max_left_minus=263	max_left_plus=236	max_min_left=139	max_min_left_minus=111	max_min_left_plus=139	max_min_right=140	max_min_right_minus=135	max_min_right_plus=140	max_pos_hash_score=556	max_right=282	max_right_minus=274	max_right_plus=282	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.80	new_junction_read_count=65	polymorphism_frequency=6.641e-01	pos_hash_score=45	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.27	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=23	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=63
JC	323	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=18	coverage_plus=21	flanking_left=300	flanking_right=300	frequency=5.480e-01	junction_possible_overlap_registers=278	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____300__300__0__0	max_left=282	max_left_minus=282	max_left_plus=270	max_min_left=140	max_min_left_minus=140	max_min_left_plus=105	max_min_right=132	max_min_right_minus=132	max_min_right_plus=117	max_pos_hash_score=556	max_right=276	max_right_minus=262	max_right_plus=276	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.50	new_junction_read_count=41	polymorphism_frequency=5.480e-01	pos_hash_score=31	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.29	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=39
JC	324	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.476e-01	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=242	max_left_minus=242	max_left_plus=158	max_min_left=13	max_min_left_minus=0	max_min_left_plus=13	max_min_right=36	max_min_right_minus=1	max_min_right_plus=36	max_pos_hash_score=548	max_right=202	max_right_minus=1	max_right_plus=202	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=1.476e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.62	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=7
JC	325	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=0	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.260e-02	junction_possible_overlap_registers=274	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=167	max_left_minus=0	max_left_plus=167	max_min_left=43	max_min_left_minus=0	max_min_left_plus=43	max_min_right=113	max_min_right_minus=0	max_min_right_plus=113	max_pos_hash_score=548	max_right=202	max_right_minus=0	max_right_plus=202	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=9.260e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=4
JC	326	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=58	coverage_plus=61	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=260	max_min_left=144	max_min_left_minus=128	max_min_left_plus=144	max_min_right=144	max_min_right_minus=144	max_min_right_plus=140	max_pos_hash_score=580	max_right=292	max_right_minus=292	max_right_plus=279	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.41	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119
JC	327	.	NC_000913	1397238	-1	NC_000913	1979518	1	0	alignment_overlap=1	coverage_minus=50	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1397238__-1__NC_000913__1979517__1__1____300__300__1__0	max_left=292	max_left_minus=272	max_left_plus=292	max_min_left=145	max_min_left_minus=145	max_min_left_plus=131	max_min_right=149	max_min_right_minus=138	max_min_right_plus=149	max_pos_hash_score=586	max_right=298	max_right_minus=298	max_right_plus=290	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	328	.	NC_000913	1411899	1	NC_000913	1434958	-1	0	alignment_overlap=26	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.657e-02	junction_possible_overlap_registers=268	key=NC_000913__1411899__1__NC_000913__1434984__-1__26____300__300__0__0	max_left=174	max_left_minus=174	max_left_plus=14	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=108	max_min_right_minus=108	max_min_right_plus=0	max_pos_hash_score=536	max_right=260	max_right_minus=108	max_right_plus=260	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.657e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=26	side_1_possible_overlap_registers=294	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.59	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=125	side_2_redundant=0	total_non_overlap_reads=3
JC	329	.	NC_000913	1469296	1	NC_000913	1733242	-1	0	alignment_overlap=0	coverage_minus=50	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1469296__1__NC_000913__1733242__-1__0____300__300__1__0	max_left=298	max_left_minus=293	max_left_plus=298	max_min_left=147	max_min_left_minus=141	max_min_left_plus=147	max_min_right=145	max_min_right_minus=145	max_min_right_plus=125	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=287	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=89	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=2	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=88
JC	330	.	NC_000913	1470516	-1	NC_000913	1733241	1	0	alignment_overlap=0	coverage_minus=35	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1470516__-1__NC_000913__1733241__1__0____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=276	max_min_left=142	max_min_left_minus=130	max_min_left_plus=142	max_min_right=148	max_min_right_minus=141	max_min_right_plus=148	max_pos_hash_score=588	max_right=288	max_right_minus=278	max_right_plus=288	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	read_count_offset=2	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=92
JC	331	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=60	coverage_plus=25	flanking_left=300	flanking_right=300	frequency=7.996e-01	junction_possible_overlap_registers=286	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=286	max_min_left=144	max_min_left_minus=132	max_min_left_plus=144	max_min_right=143	max_min_right_minus=143	max_min_right_plus=117	max_pos_hash_score=572	max_right=243	max_right_minus=243	max_right_plus=224	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.18	new_junction_read_count=99	polymorphism_frequency=7.996e-01	pos_hash_score=56	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85
JC	332	.	NC_000913	1978503	1	NC_000913	2177251	-1	0	alignment_overlap=0	coverage_minus=64	coverage_plus=34	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1978503__1__NC_000913__2177251__-1__0____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=263	max_min_left=145	max_min_left_minus=140	max_min_left_plus=145	max_min_right=148	max_min_right_minus=148	max_min_right_plus=146	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=274	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=98
JC	333	.	NC_000913	1979270	-1	NC_000913	2177243	1	0	alignment_overlap=0	coverage_minus=36	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979270__-1__NC_000913__2177243__1__0____300__300__1__0	max_left=291	max_left_minus=291	max_left_plus=264	max_min_left=149	max_min_left_minus=142	max_min_left_plus=149	max_min_right=149	max_min_right_minus=148	max_min_right_plus=149	max_pos_hash_score=588	max_right=271	max_right_minus=271	max_right_plus=266	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.83	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71
JC	334	.	NC_000913	1979521	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=63	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979521__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=251	max_left_minus=246	max_left_plus=251	max_min_left=149	max_min_left_minus=135	max_min_left_plus=149	max_min_right=146	max_min_right_minus=134	max_min_right_plus=146	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=288	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=92
JC	335	.	NC_000913	2170171	1	NC_000913	2468300	-1	0	alignment_overlap=0	coverage_minus=67	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2170171__1__NC_000913__2468300__-1__0____300__300__1__0	max_left=296	max_left_minus=296	max_left_plus=237	max_min_left=142	max_min_left_minus=142	max_min_left_plus=130	max_min_right=149	max_min_right_minus=149	max_min_right_plus=145	max_pos_hash_score=588	max_right=281	max_right_minus=281	max_right_plus=277	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=109	polymorphism_frequency=9.818e-01	pos_hash_score=67	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=108
JC	336	.	NC_000913	2171428	-1	NC_000913	2468298	1	0	alignment_overlap=1	coverage_minus=41	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2171428__-1__NC_000913__2468297__1__1____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=293	max_min_left=147	max_min_left_minus=111	max_min_left_plus=147	max_min_right=142	max_min_right_minus=140	max_min_right_plus=142	max_pos_hash_score=586	max_right=294	max_right_minus=294	max_right_plus=264	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.12	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=92
JC	337	.	NC_000913	2357690	-1	NC_000913	2357874	1	0	alignment_overlap=25	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.953e-02	junction_possible_overlap_registers=269	key=NC_000913__2357690__-1__NC_000913__2357849__1__25____300__300__0__0	max_left=250	max_left_minus=250	max_left_plus=203	max_min_left=127	max_min_left_minus=127	max_min_left_plus=82	max_min_right=130	max_min_right_minus=9	max_min_right_plus=130	max_pos_hash_score=538	max_right=189	max_right_minus=147	max_right_plus=189	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.953e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.24	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=5
JC	338	.	NC_000913	2357730	-1	NC_000913	2357926	1	0	alignment_overlap=40	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=8.632e-02	junction_possible_overlap_registers=254	key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0	max_left=235	max_left_minus=164	max_left_plus=235	max_min_left=63	max_min_left_minus=63	max_min_left_plus=60	max_min_right=83	max_min_right_minus=83	max_min_right_plus=83	max_pos_hash_score=508	max_right=200	max_right_minus=196	max_right_plus=200	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.11	new_junction_read_count=8	polymorphism_frequency=8.632e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=40	side_1_possible_overlap_registers=294	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=8
JC	339	.	NC_000913	2518116	-1	NC_000913	2518232	1	0	alignment_overlap=81	coverage_minus=5	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=1.242e-01	junction_possible_overlap_registers=213	key=NC_000913__2518116__-1__NC_000913__2518151__1__81____300__300__0__0	max_left=201	max_left_minus=201	max_left_plus=63	max_min_left=104	max_min_left_minus=104	max_min_left_plus=63	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_pos_hash_score=426	max_right=214	max_right_minus=214	max_right_plus=156	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.11	new_junction_read_count=7	polymorphism_frequency=1.242e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=81	side_1_possible_overlap_registers=294	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=6
JC	340	.	NC_000913	2521006	-1	NC_000913	2521249	1	0	alignment_overlap=76	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.216e-01	junction_possible_overlap_registers=218	key=NC_000913__2521006__-1__NC_000913__2521173__1__76____300__300__0__0	max_left=193	max_left_minus=193	max_left_plus=68	max_min_left=103	max_min_left_minus=103	max_min_left_plus=68	max_min_right=30	max_min_right_minus=30	max_min_right_plus=0	max_pos_hash_score=436	max_right=171	max_right_minus=118	max_right_plus=171	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.11	new_junction_read_count=7	polymorphism_frequency=1.216e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=7
JC	341	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=34	coverage_plus=22	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=271	max_left_minus=269	max_left_plus=271	max_min_left=145	max_min_left_minus=138	max_min_left_plus=145	max_min_right=139	max_min_right_minus=86	max_min_right_plus=139	max_pos_hash_score=572	max_right=269	max_right_minus=266	max_right_plus=269	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.69	new_junction_read_count=58	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=56
JC	342	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.014e-02	junction_possible_overlap_registers=269	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=238	max_left_minus=238	max_left_plus=238	max_min_left=104	max_min_left_minus=104	max_min_left_plus=104	max_min_right=55	max_min_right_minus=10	max_min_right_plus=55	max_pos_hash_score=538	max_right=233	max_right_minus=108	max_right_plus=233	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=9.014e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=6
JC	343	.	NC_000913	2653502	-1	NC_000913	2653825	1	0	alignment_overlap=34	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.540e-02	junction_possible_overlap_registers=260	key=NC_000913__2653502__-1__NC_000913__2653791__1__34____300__300__0__0	max_left=79	max_left_minus=79	max_left_plus=79	max_min_left=79	max_min_left_minus=79	max_min_left_plus=79	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=520	max_right=154	max_right_minus=136	max_right_plus=154	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=9.540e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=34	side_1_possible_overlap_registers=294	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=260	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=7
JC	344	.	NC_000913	2817942	-1	NC_000913	2818492	1	0	alignment_overlap=20	coverage_minus=5	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=9.560e-02	junction_possible_overlap_registers=274	key=NC_000913__2817942__-1__NC_000913__2818472__1__20____300__300__0__0	max_left=244	max_left_minus=244	max_left_plus=41	max_min_left=88	max_min_left_minus=88	max_min_left_plus=41	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=548	max_right=239	max_right_minus=198	max_right_plus=239	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=9.560e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=6
JC	345	.	NC_000913	2877792	-1	NC_000913	2878283	1	0	alignment_overlap=19	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.432e-02	junction_possible_overlap_registers=275	key=NC_000913__2877792__-1__NC_000913__2878264__1__19____300__300__0__0	max_left=114	max_left_minus=114	max_left_plus=114	max_min_left=72	max_min_left_minus=72	max_min_left_plus=72	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=550	max_right=130	max_right_minus=130	max_right_plus=130	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=7.432e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=19	side_1_possible_overlap_registers=294	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=0	side_2_possible_overlap_registers=275	side_2_read_count=51	side_2_redundant=0	total_non_overlap_reads=4
JC	346	.	NC_000913	3267967	1	NC_000913	3584195	-1	0	alignment_overlap=1	coverage_minus=42	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3267966__1__NC_000913__3584195__-1__1____300__300__0__1	max_left=297	max_left_minus=281	max_left_plus=297	max_min_left=143	max_min_left_minus=128	max_min_left_plus=143	max_min_right=139	max_min_right_minus=118	max_min_right_plus=139	max_pos_hash_score=586	max_right=286	max_right_minus=279	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.26	new_junction_read_count=108	polymorphism_frequency=9.906e-01	pos_hash_score=60	prediction=consensus	read_count_offset=8	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=285	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=106
JC	347	.	NC_000913	3267974	-1	NC_000913	3583428	1	0	alignment_overlap=0	coverage_minus=31	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3267974__-1__NC_000913__3583428__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=285	max_min_left=147	max_min_left_minus=127	max_min_left_plus=147	max_min_right=145	max_min_right_minus=145	max_min_right_plus=142	max_pos_hash_score=588	max_right=294	max_right_minus=237	max_right_plus=294	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.15	new_junction_read_count=99	polymorphism_frequency=9.897e-01	pos_hash_score=57	prediction=consensus	read_count_offset=8	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=286	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=93
JC	348	.	NC_000913	3350556	1	NC_000913	3583428	1	0	alignment_overlap=0	coverage_minus=32	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3350556__1__NC_000913__3583428__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=279	max_min_left=145	max_min_left_minus=134	max_min_left_plus=145	max_min_right=142	max_min_right_minus=137	max_min_right_plus=142	max_pos_hash_score=588	max_right=284	max_right_minus=280	max_right_plus=284	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.92	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	read_count_offset=8	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=286	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=77
JC	349	.	NC_000913	3350563	-1	NC_000913	3584195	-1	0	alignment_overlap=0	coverage_minus=25	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3350563__-1__NC_000913__3584195__-1__0____300__300__0__1	max_left=266	max_left_minus=262	max_left_plus=266	max_min_left=149	max_min_left_minus=149	max_min_left_plus=137	max_min_right=140	max_min_right_minus=140	max_min_right_plus=139	max_pos_hash_score=588	max_right=289	max_right_minus=257	max_right_plus=289	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.88	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	read_count_offset=8	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=286	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=75
JC	350	.	NC_000913	3521170	-1	NC_000913	3521499	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.676e-02	junction_possible_overlap_registers=285	key=NC_000913__3521170__-1__NC_000913__3521490__1__9____300__300__0__0	max_left=189	max_left_minus=189	max_left_plus=189	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=142	max_min_right_minus=102	max_min_right_plus=142	max_pos_hash_score=570	max_right=142	max_right_minus=102	max_right_plus=142	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.676e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=4
JC	351	.	NC_000913	3583428	1	NC_000913	4542049	-1	0	alignment_overlap=1	coverage_minus=47	coverage_plus=24	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3583428__1__NC_000913__4542050__-1__1____300__300__1__0	max_left=278	max_left_minus=277	max_left_plus=278	max_min_left=147	max_min_left_minus=147	max_min_left_plus=133	max_min_right=147	max_min_right_minus=147	max_min_right_plus=138	max_pos_hash_score=586	max_right=297	max_right_minus=297	max_right_plus=239	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.85	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71
JC	352	.	NC_000913	3584195	-1	NC_000913	4542042	1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=29	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3584195__-1__NC_000913__4542042__1__0____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=285	max_min_left=139	max_min_left_minus=139	max_min_left_plus=85	max_min_right=148	max_min_right_minus=138	max_min_right_plus=148	max_pos_hash_score=588	max_right=297	max_right_minus=282	max_right_plus=297	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.91	new_junction_read_count=78	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=78
JC	353	.	NC_000913	3648146	-1	NC_000913	3648378	1	0	alignment_overlap=58	coverage_minus=5	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.264e-01	junction_possible_overlap_registers=236	key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0	max_left=227	max_left_minus=214	max_left_plus=227	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=95	max_min_right_minus=59	max_min_right_plus=95	max_pos_hash_score=472	max_right=222	max_right_minus=59	max_right_plus=222	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.16	new_junction_read_count=11	polymorphism_frequency=1.264e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=58	side_1_possible_overlap_registers=294	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=11
JC	354	.	NC_000913	3708466	-1	NC_000913	3708635	1	0	alignment_overlap=108	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.067e-01	junction_possible_overlap_registers=186	key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0	max_left=127	max_left_minus=127	max_left_plus=119	max_min_left=37	max_min_left_minus=37	max_min_left_plus=14	max_min_right=73	max_min_right_minus=63	max_min_right_plus=73	max_pos_hash_score=372	max_right=155	max_right_minus=155	max_right_plus=73	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.07	new_junction_read_count=4	polymorphism_frequency=1.067e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=108	side_1_possible_overlap_registers=294	side_1_read_count=49	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=186	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=4
JC	355	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=13	coverage_plus=22	flanking_left=300	flanking_right=300	frequency=3.274e-01	junction_possible_overlap_registers=285	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=287	max_left_minus=287	max_left_plus=275	max_min_left=141	max_min_left_minus=141	max_min_left_plus=114	max_min_right=135	max_min_right_minus=135	max_min_right_plus=80	max_pos_hash_score=570	max_right=290	max_right_minus=222	max_right_plus=290	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.42	new_junction_read_count=35	polymorphism_frequency=3.274e-01	pos_hash_score=26	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=35
JC	356	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=27	coverage_plus=14	flanking_left=300	flanking_right=300	frequency=3.508e-01	junction_possible_overlap_registers=285	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=266	max_left_minus=266	max_left_plus=208	max_min_left=144	max_min_left_minus=144	max_min_left_plus=139	max_min_right=142	max_min_right_minus=142	max_min_right_plus=114	max_pos_hash_score=570	max_right=286	max_right_minus=285	max_right_plus=286	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.50	new_junction_read_count=42	polymorphism_frequency=3.508e-01	pos_hash_score=39	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=41
UN	357	.	NC_000913	15642	16453
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UN	505	.	NC_000913	4507741	4508429