#=GENOME_DIFF	1.0
#=CREATED	00:34:08 11 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9630_S36_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9630_S36_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9630_S36_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9630_S36_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9630_S36_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	413409950
#=CONVERTED-READS	1396047
#=INPUT-BASES	413502444
#=INPUT-READS	1396362
#=MAPPED-BASES	388306381
#=MAPPED-READS	1312003
DEL	1	989	NC_000913	310	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	2	990	NC_000913	393	G
SNP	3	991	NC_000913	588	A
SNP	4	992	NC_000913	774	C
SNP	5	993	NC_000913	867	T
SNP	6	994	NC_000913	939	A
SNP	7	995	NC_000913	966	C
SNP	8	996	NC_000913	969	G
SNP	9	997	NC_000913	1206	T
SNP	10	998	NC_000913	1278	T
SNP	11	999	NC_000913	1299	C
SNP	12	1000	NC_000913	1302	C
SNP	13	1001	NC_000913	1323	T
SNP	14	1002	NC_000913	1341	G
SNP	15	1003	NC_000913	1407	T
SNP	16	1004	NC_000913	1425	G
SNP	17	1005	NC_000913	1509	G
SNP	18	1006	NC_000913	1593	G
SNP	19	1007	NC_000913	1797	A
SNP	20	1008	NC_000913	1860	A
SNP	21	1009	NC_000913	1875	G
SNP	22	1010	NC_000913	1884	A
SNP	23	1011	NC_000913	2038	T
SNP	24	1012	NC_000913	2108	T
SNP	25	1013	NC_000913	2116	C
SNP	26	1014	NC_000913	2211	T
SNP	27	1015	NC_000913	2247	A
SNP	28	1016	NC_000913	2307	T
SNP	29	1017	NC_000913	2310	T
SNP	30	1018	NC_000913	2343	T
SNP	31	1019	NC_000913	2373	A
SNP	32	1020	NC_000913	2382	G
SNP	33	1021	NC_000913	2469	T
SNP	34	1022	NC_000913	2508	G
SNP	35	1023	NC_000913	2595	T
SNP	36	1024	NC_000913	2597	C
SNP	37	1025	NC_000913	2676	T
SNP	38	1026	NC_000913	2709	G
SNP	39	1027	NC_000913	2760	C
SNP	40	1028	NC_000913	3025	G
SNP	41	1029	NC_000913	3028	T
SNP	42	1030	NC_000913	3031	C
SNP	43	1031	NC_000913	3055	T
SNP	44	1032	NC_000913	3073	A
SNP	45	1033	NC_000913	3097	C
SNP	46	1034	NC_000913	3142	T
SNP	47	1035	NC_000913	3196	A
SNP	48	1036	NC_000913	3199	A
SNP	49	1037	NC_000913	3244	T
SNP	50	1038	NC_000913	3424	T
SNP	51	1039	NC_000913	3520	T
SNP	52	1040	NC_000913	3547	T
SNP	53	1041	NC_000913	3622	T
SNP	54	1042	NC_000913	3763	T
SNP	55	1043	NC_000913	3937	G
SNP	56	1044	NC_000913	4102	C
SNP	57	1045	NC_000913	4336	G
SNP	58	1046	NC_000913	4351	G
SNP	59	1047	NC_000913	4363	A
SNP	60	1048	NC_000913	4420	A
SUB	61	1049,1050	NC_000913	4441	2	AG
SNP	62	1051	NC_000913	4780	C
SNP	63	1052	NC_000913	4804	G
SNP	64	1053	NC_000913	4822	C
DEL	65	1054	NC_000913	5067	1
SNP	66	1055	NC_000913	5099	C
SNP	67	1056	NC_000913	5171	T
SNP	68	1057	NC_000913	5183	C
SNP	69	1058	NC_000913	5234	A
SNP	70	1059	NC_000913	5442	C
SNP	71	1060	NC_000913	5603	G
SNP	72	1061	NC_000913	5642	C
SNP	73	1062	NC_000913	5732	G
SNP	74	1063	NC_000913	5806	A
SNP	75	1064	NC_000913	5851	T
SNP	76	1065	NC_000913	6106	C
SNP	77	1066	NC_000913	6239	T
SNP	78	1067	NC_000913	6349	T
SNP	79	1068	NC_000913	6502	A
SNP	80	1069	NC_000913	6574	G
SNP	81	1070	NC_000913	6595	C
SNP	82	1071	NC_000913	6748	A
SNP	83	1072	NC_000913	6850	G
SNP	84	1073	NC_000913	6898	G
SNP	85	1074	NC_000913	6933	A
SNP	86	1075	NC_000913	7132	C
SNP	87	1076	NC_000913	7297	C
SNP	88	1077	NC_000913	7342	C
SNP	89	1078	NC_000913	7384	C
SNP	90	1079	NC_000913	7395	C
SNP	91	1080	NC_000913	7414	A
SNP	92	1081	NC_000913	7456	T
SNP	93	1082	NC_000913	7459	C
SNP	94	1083	NC_000913	7474	C
SNP	95	1084	NC_000913	7479	T
SNP	96	1085	NC_000913	7498	G
SNP	97	1086	NC_000913	7598	G
SNP	98	1087	NC_000913	7600	A
SNP	99	1088	NC_000913	7618	C
SNP	100	1089	NC_000913	7624	G
SNP	101	1090	NC_000913	7627	G
SNP	102	1091	NC_000913	7681	G
SNP	103	1092	NC_000913	7711	T
SNP	104	1093	NC_000913	7939	A
SNP	105	1094	NC_000913	8963	T
SUB	106	1095,1096	NC_000913	8975	2	TA
SNP	107	1097	NC_000913	8996	T
SNP	108	1098	NC_000913	9488	A
SNP	109	1099	NC_000913	9623	A
SNP	110	1100	NC_000913	9665	T
SNP	111	1101	NC_000913	9668	T
SNP	112	1102	NC_000913	9754	C
SNP	113	1103	NC_000913	9839	A
SNP	114	1104	NC_000913	9851	T
SNP	115	1105	NC_000913	10006	A
SNP	116	1106	NC_000913	10015	A
SNP	117	1107	NC_000913	10024	A
SNP	118	1108	NC_000913	10099	A
SNP	119	1109	NC_000913	10260	A
SNP	120	1110	NC_000913	10336	G
SNP	121	1111	NC_000913	10548	A
SNP	122	1112	NC_000913	10637	A
SNP	123	1113	NC_000913	10642	G
SNP	124	1114	NC_000913	10703	T
SNP	125	1115	NC_000913	10718	A
SNP	126	1116	NC_000913	10747	A
SNP	127	1117	NC_000913	10751	T
SNP	128	1118	NC_000913	10754	G
SNP	129	1119	NC_000913	10757	C
SNP	130	1120	NC_000913	10772	A
SNP	131	1121	NC_000913	10802	C
SNP	132	1122	NC_000913	10840	A
SNP	133	1123	NC_000913	10865	G
SNP	134	1124	NC_000913	10973	A
SNP	135	1125	NC_000913	10985	G
SNP	136	1126	NC_000913	11021	C
SNP	137	1127	NC_000913	11063	T
SNP	138	1128	NC_000913	11156	A
SNP	139	1129	NC_000913	11225	T
SNP	140	1130	NC_000913	11366	T
SNP	141	1131	NC_000913	11439	G
SNP	142	1132	NC_000913	11481	A
SNP	143	1133	NC_000913	11541	A
SNP	144	1134	NC_000913	11695	A
SNP	145	1135	NC_000913	11814	A
SNP	146	1136	NC_000913	11854	G
SNP	147	1137	NC_000913	11861	T
SNP	148	1138	NC_000913	11925	C
SNP	149	1139	NC_000913	12026	G
SNP	150	1140	NC_000913	12237	T
SNP	151	1141	NC_000913	12309	G
SNP	152	1142	NC_000913	12357	C
SNP	153	1143	NC_000913	12384	C
SNP	154	1144	NC_000913	12507	C
SNP	155	1145	NC_000913	12714	T
SNP	156	1146	NC_000913	12846	T
SNP	157	1147	NC_000913	12879	C
SNP	158	1148	NC_000913	13014	G
SNP	159	1149	NC_000913	13029	T
SNP	160	1150	NC_000913	13320	G
SNP	161	1151	NC_000913	13539	G
SNP	162	1152	NC_000913	13866	A
SNP	163	1153	NC_000913	13932	G
SNP	164	1154	NC_000913	14223	A
SNP	165	1155	NC_000913	14232	A
SNP	166	1156	NC_000913	14401	T
SNP	167	1157	NC_000913	14647	C
SNP	168	1158	NC_000913	14686	T
SNP	169	1159	NC_000913	14698	T
SNP	170	1160	NC_000913	14701	C
SNP	171	1161	NC_000913	14704	G
SNP	172	1162	NC_000913	14956	C
SNP	173	1163	NC_000913	15073	T
SNP	174	1164	NC_000913	15172	G
SNP	175	1165	NC_000913	15174	A
SNP	176	1166	NC_000913	15226	T
SNP	177	1167	NC_000913	15328	T
SNP	178	1168	NC_000913	15338	T
SNP	179	1169	NC_000913	15369	A
SNP	180	1170	NC_000913	16749	A
SNP	181	1171	NC_000913	16966	G
SNP	182	1172	NC_000913	16981	A
SNP	183	1173	NC_000913	17039	T
SNP	184	1174	NC_000913	17085	C
SNP	185	1175	NC_000913	17175	T
SNP	186	1176	NC_000913	17219	T
SUB	187	1177,1178	NC_000913	17228	2	AT
SNP	188	1179	NC_000913	17231	A
SNP	189	1180	NC_000913	17245	G
SNP	190	1181	NC_000913	17281	A
SNP	191	1182	NC_000913	17309	G
INS	192	1183	NC_000913	17348	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
SNP	193	1184	NC_000913	17350	T
SNP	194	1185	NC_000913	17383	G
SNP	195	1186	NC_000913	17385	A
SNP	196	1187	NC_000913	17399	G
SNP	197	1188	NC_000913	17436	T
SNP	198	1189	NC_000913	17578	T
SNP	199	1190	NC_000913	17809	T
SNP	200	1191	NC_000913	17830	C
SNP	201	1192	NC_000913	17893	C
SNP	202	1193	NC_000913	17908	G
SNP	203	1194	NC_000913	18093	T
SNP	204	1195	NC_000913	18118	G
SNP	205	1196	NC_000913	18127	A
SNP	206	1197	NC_000913	18169	C
SNP	207	1198	NC_000913	18253	A
SNP	208	1199	NC_000913	18322	T
SNP	209	1200	NC_000913	18477	C
SNP	210	1201	NC_000913	19014	T
SNP	211	1202	NC_000913	19398	G
SNP	212	1203	NC_000913	19613	C
SNP	213	1204	NC_000913	19627	C
INS	214	1205	NC_000913	19634	C	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=C
SNP	215	1206	NC_000913	19670	A
SNP	216	1207	NC_000913	19715	A
SNP	217	1208	NC_000913	20590	C
SNP	218	1209	NC_000913	20600	A
DEL	219	1210	NC_000913	20605	1
INS	220	2050	NC_000913	20703	GCAAGAACCTGCAA
SNP	221	1211	NC_000913	21617	C
SNP	222	1212	NC_000913	21619	G
SNP	223	1213	NC_000913	21750	T
SNP	224	1214	NC_000913	21895	T
SNP	225	1215	NC_000913	21910	T
SNP	226	1216	NC_000913	21922	G
SNP	227	1217	NC_000913	21925	G
SNP	228	1218	NC_000913	21952	A
SNP	229	1219	NC_000913	22048	A
SNP	230	1220	NC_000913	22373	C
SNP	231	1221	NC_000913	22468	G
SNP	232	1222	NC_000913	22942	G
SNP	233	1223	NC_000913	22945	A
SNP	234	1224	NC_000913	23032	T
SNP	235	1225	NC_000913	23038	G
SNP	236	1226	NC_000913	23104	G
SNP	237	1227	NC_000913	23116	T
SNP	238	1228	NC_000913	23137	G
SNP	239	1229	NC_000913	23161	T
SNP	240	1230	NC_000913	23270	A
SNP	241	1231	NC_000913	23297	T
SNP	242	1232	NC_000913	23803	C
SNP	243	1233	NC_000913	23860	C
SUB	244	1234,1235	NC_000913	23896	2	TA
SNP	245	1236	NC_000913	23899	C
SNP	246	1237	NC_000913	23956	C
SNP	247	1238	NC_000913	23962	T
SNP	248	1239	NC_000913	23977	T
SUB	249	1240,1241	NC_000913	23980	2	TC
SNP	250	1242	NC_000913	23983	C
SNP	251	1243	NC_000913	23986	C
SNP	252	1244	NC_000913	24085	G
SNP	253	1245	NC_000913	24091	T
SNP	254	1246	NC_000913	24094	T
SNP	255	1247	NC_000913	24133	A
SNP	256	1248	NC_000913	24136	C
SNP	257	1249	NC_000913	24217	C
SNP	258	1250	NC_000913	24340	C
SNP	259	1251	NC_000913	24616	C
SNP	260	1252	NC_000913	24646	G
SNP	261	1253	NC_000913	24670	T
SNP	262	1254	NC_000913	24781	T
SNP	263	1255	NC_000913	24799	A
SNP	264	1256	NC_000913	24935	G
SNP	265	1257	NC_000913	24977	T
SNP	266	1258	NC_000913	25598	G
SNP	267	1259	NC_000913	25677	A
SNP	268	1260	NC_000913	25685	A
SNP	269	1261	NC_000913	26534	C
SNP	270	1262	NC_000913	26606	C
SNP	271	1263	NC_000913	26609	T
SNP	272	1264	NC_000913	26621	G
SNP	273	1265	NC_000913	26624	G
SNP	274	1266	NC_000913	26636	C
SNP	275	1267	NC_000913	26648	T
SNP	276	1268	NC_000913	26663	T
SNP	277	1269	NC_000913	26666	G
SNP	278	1270	NC_000913	27026	T
SNP	279	1271	NC_000913	27104	A
SNP	280	1272	NC_000913	27367	C
SNP	281	1273	NC_000913	45950	A
SNP	282	1274	NC_000913	45978	T
SNP	283	1275	NC_000913	46028	C
SNP	284	1276	NC_000913	46247	C
SNP	285	1277	NC_000913	46253	C
SNP	286	1278	NC_000913	46277	C
SNP	287	1279	NC_000913	46448	A
SNP	288	1280	NC_000913	46634	T
SNP	289	1281	NC_000913	46652	G
SNP	290	1282	NC_000913	46655	G
SNP	291	1283	NC_000913	46661	C
SNP	292	1284	NC_000913	46790	G
SNP	293	1285	NC_000913	46943	C
SNP	294	1286	NC_000913	46976	G
SNP	295	1287	NC_000913	47099	A
SNP	296	1288	NC_000913	47434	C
SNP	297	1289	NC_000913	48033	G
SNP	298	1290	NC_000913	66635	T
SNP	299	1291	NC_000913	71170	C
SNP	300	1292	NC_000913	76162	T
SNP	301	1293	NC_000913	81102	A
SNP	302	1294	NC_000913	122765	A
SNP	303	1295	NC_000913	154182	T
SNP	304	1296	NC_000913	156068	G
SNP	305	1297	NC_000913	193327	T
DEL	306	2033,2052	NC_000913	255892	18063	mediated=IS5
SNP	307	1298	NC_000913	284535	G
SNP	308	1299	NC_000913	292019	T
MOB	309	2059,2060	NC_000913	293207	IS2	-1	5
SNP	310	1300	NC_000913	297187	C
SNP	311	1301	NC_000913	309381	T
SNP	312	1302	NC_000913	309985	A
SNP	313	1303	NC_000913	321260	T
SNP	314	1304	NC_000913	341180	T
MOB	315	2049,2053	NC_000913	362204	IS1	-1	9
SNP	316	1305	NC_000913	410666	T
SNP	317	1306	NC_000913	421027	T
SNP	318	1308	NC_000913	472849	G
SNP	319	1309	NC_000913	495622	T
SNP	320	1310	NC_000913	500988	T
SNP	321	1311	NC_000913	514434	T
SNP	322	1312	NC_000913	516902	A
SNP	323	1313	NC_000913	534742	A
DEL	324	2034,2055	NC_000913	575786	3398	mediated=IS5
SNP	325	1314	NC_000913	582597	T
SNP	326	1315	NC_000913	602835	A
SNP	327	1316	NC_000913	674259	A
SNP	328	1317	NC_000913	677829	C
SNP	329	1318	NC_000913	694941	A
SNP	330	1319	NC_000913	696470	T
SNP	331	1320	NC_000913	708774	A
SNP	332	1321	NC_000913	721604	A
SNP	333	1322	NC_000913	780624	T
SNP	334	1323	NC_000913	789580	A
MOB	335	2054,2056	NC_000913	820914	IS5	1	4
SNP	336	1324	NC_000913	822527	T
SNP	337	1326	NC_000913	883396	T
SNP	338	1327	NC_000913	908169	T
SNP	339	1328	NC_000913	968252	A
SNP	340	1330	NC_000913	1054855	A
SNP	341	1331	NC_000913	1066699	T
SNP	342	1332	NC_000913	1075234	T
SNP	343	1333	NC_000913	1075528	T
SNP	344	1334	NC_000913	1078268	T
SNP	345	1335	NC_000913	1086153	T
SNP	346	1336	NC_000913	1090508	T
MOB	347	2057,2058	NC_000913	1105699	IS1	1	9
SNP	348	1337	NC_000913	1107209	T
SNP	349	1338	NC_000913	1109740	T
SNP	350	1339	NC_000913	1110033	A
SNP	351	1340	NC_000913	1112209	T
SNP	352	1341	NC_000913	1112421	T
SNP	353	1342	NC_000913	1114389	T
SNP	354	1343	NC_000913	1115185	T
SNP	355	1344	NC_000913	1117707	A
SNP	356	1345	NC_000913	1120111	A
SNP	357	1346	NC_000913	1121547	A
SNP	358	1347	NC_000913	1121762	A
SUB	359	1348,1349	NC_000913	1123823	2	AG
SNP	360	1350	NC_000913	1126316	A
SNP	361	1351	NC_000913	1126518	T
SNP	362	1352	NC_000913	1127334	A
SNP	363	1353	NC_000913	1127338	A
SNP	364	1354	NC_000913	1129796	A
SNP	365	1355	NC_000913	1130210	A
SNP	366	1356	NC_000913	1130803	T
SNP	367	1357	NC_000913	1133273	A
SNP	368	1358	NC_000913	1134466	T
SNP	369	1359	NC_000913	1138152	T
SNP	370	1360	NC_000913	1138533	T
SNP	371	1361	NC_000913	1138831	T
SNP	372	1362	NC_000913	1141865	A
SNP	373	1363	NC_000913	1144974	T
SNP	374	1364	NC_000913	1146110	T
SNP	375	1365	NC_000913	1146384	G
SNP	376	1366	NC_000913	1147792	A
SNP	377	1367	NC_000913	1161403	A
SNP	378	1368	NC_000913	1169836	G
SNP	379	1369	NC_000913	1171417	A
SNP	380	1370	NC_000913	1176602	T
SNP	381	1371	NC_000913	1180126	A
SNP	382	1372	NC_000913	1181995	A
SNP	383	1373	NC_000913	1189980	G
SNP	384	1374	NC_000913	1193141	A
SNP	385	1375	NC_000913	1194922	A
SNP	386	1376	NC_000913	1201548	C
SNP	387	1377	NC_000913	1201550	A
SNP	388	1378	NC_000913	1211857	G
SNP	389	1379	NC_000913	1227656	A
SNP	390	1380	NC_000913	1234947	G
MOB	391	2074,2075	NC_000913	1235323	IS2	1	5
SNP	392	1381	NC_000913	1244908	T
SNP	393	1382	NC_000913	1252059	T
SNP	394	1383	NC_000913	1252663	T
SNP	395	1384	NC_000913	1253002	T
SNP	396	1385	NC_000913	1282857	T
MOB	397	2078,2079	NC_000913	1291151	IS5	-1	4
SNP	398	1386	NC_000913	1306736	G
SNP	399	1387	NC_000913	1308684	C
SNP	400	1388	NC_000913	1323798	A
SNP	401	1389	NC_000913	1325054	A
SUB	402	1390,1391	NC_000913	1331059	2	AT
SNP	403	1392	NC_000913	1337394	G
SNP	404	1393	NC_000913	1341542	A
SNP	405	1394	NC_000913	1358859	C
SNP	406	1395	NC_000913	1375737	A
SNP	407	1396	NC_000913	1405758	A
DEL	408	2035,2081	NC_000913	1411925	23060
SNP	409	1399	NC_000913	1490095	A
SUB	410	1400,1401,1402,1403	NC_000913	1497385	4	CAA
SNP	411	1406	NC_000913	1629247	T
SNP	412	1407	NC_000913	1632513	T
SNP	413	1408	NC_000913	1643679	T
SNP	414	1409	NC_000913	1652331	C
MOB	415	2082,2083	NC_000913	1655874	IS2	1	5
SNP	416	1410	NC_000913	1660102	T
SNP	417	1411	NC_000913	1667460	A
SNP	418	1412	NC_000913	1894839	C
DEL	419	2036,2084	NC_000913	1978503	776
MOB	420	2090,2091	NC_000913	2011968	IS5	1	4
SNP	421	1413	NC_000913	2040433	A
DEL	422	1414	NC_000913	2111259	1
SNP	423	1415	NC_000913	2163929	A
DEL	424	1416,1417	NC_000913	2173363	2
SNP	425	1418	NC_000913	2173448	T
SNP	426	1419	NC_000913	2204395	A
MOB	427	2085,2087	NC_000913	2238267	IS1	1	9
MOB	428	2092,2093	NC_000913	2320770	IS2	1	5
MOB	429	2088,2097	NC_000913	2323117	IS1	-1	8
SNP	430	1421	NC_000913	2348366	A
SNP	431	1422	NC_000913	2388753	A
SNP	432	1424	NC_000913	2512423	T
DEL	433	2037,2101	NC_000913	2558699	6790
SNP	434	1426	NC_000913	2577937	C
SNP	435	1427	NC_000913	2582272	T
SNP	436	1428	NC_000913	2587112	T
SNP	437	1429	NC_000913	2600978	T
SNP	438	1430	NC_000913	2613763	A
SNP	439	1431	NC_000913	2623838	A
SNP	440	1432	NC_000913	2632711	A
SNP	441	1433	NC_000913	2722946	A
SNP	442	1435	NC_000913	2774947	A
SNP	443	1436	NC_000913	2778119	T
SNP	444	1437	NC_000913	2806897	A
SNP	445	1438	NC_000913	2814595	T
SNP	446	1439	NC_000913	2818331	A
SNP	447	1440	NC_000913	2823616	A
SNP	448	1441	NC_000913	2849941	A
SNP	449	1442	NC_000913	2851821	A
SNP	450	1443	NC_000913	2867455	A
SNP	451	1444	NC_000913	2880635	C
SNP	452	1445	NC_000913	2881212	T
SNP	453	1446	NC_000913	2883115	A
SNP	454	1447	NC_000913	2886731	C
SNP	455	1448	NC_000913	2890626	A
SNP	456	1449	NC_000913	2893219	T
SNP	457	1450	NC_000913	2893647	T
SNP	458	1451	NC_000913	2894839	T
SNP	459	1452	NC_000913	2916216	A
SNP	460	1453	NC_000913	2926772	A
SNP	461	1454	NC_000913	2934092	A
DEL	462	1456	NC_000913	3025601	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	463	1460	NC_000913	3070858	G
SNP	464	1461	NC_000913	3096754	A
DEL	465	2038,2095	NC_000913	3131341	128	mediated=IS5
DEL	466	1463	NC_000913	3207549	1
SNP	467	1464	NC_000913	3256301	A
SNP	468	1465	NC_000913	3279276	G
SNP	469	1466	NC_000913	3296481	A
SNP	470	1467	NC_000913	3329743	T
SNP	471	1468	NC_000913	3364664	A
SNP	472	1469	NC_000913	3388041	G
SNP	473	1470	NC_000913	3411689	T
SNP	474	1471	NC_000913	3433665	T
SNP	475	1472	NC_000913	3433900	T
SNP	476	1473	NC_000913	3474425	G
SNP	477	1474	NC_000913	3481131	A
SNP	478	1475	NC_000913	3486502	T
SNP	479	1476	NC_000913	3500129	A
SNP	480	1477	NC_000913	3511466	T
SNP	481	1478	NC_000913	3517171	A
SUB	482	1479,1480	NC_000913	3555047	2	TG
SNP	483	1481	NC_000913	3560362	A
INS	484	1482	NC_000913	3560455	G
SNP	485	1483	NC_000913	3591074	A
SNP	486	1484	NC_000913	3630221	T
DEL	487	2040,2096	NC_000913	3635127	16909	mediated=IS5
SNP	488	1485	NC_000913	3664594	A
SNP	489	1486	NC_000913	3665576	T
SNP	490	1488	NC_000913	3707883	A
SNP	491	1489	NC_000913	3707947	A
SNP	492	1490	NC_000913	3719429	A
SNP	493	1491	NC_000913	3725176	G
SUB	494	1492,1493	NC_000913	3729440	2	TT
SNP	495	1494	NC_000913	3730560	T
SNP	496	1497	NC_000913	3770539	T
DEL	497	1498	NC_000913	3773173	1
SNP	498	1499	NC_000913	3773176	T
INS	499	1500	NC_000913	3815883	C
SNP	500	1501	NC_000913	3834564	A
SNP	501	1503	NC_000913	3926991	A
SNP	502	1504	NC_000913	3931779	C
SUB	503	1505,1506	NC_000913	3966530	2	TT
SNP	504	1507	NC_000913	3967770	T
SNP	505	1509	NC_000913	4133252	T
MOB	506	2118,2119	NC_000913	4147156	IS2	-1	5
SNP	507	1510	NC_000913	4159010	T
SUB	508	1511,1512	NC_000913	4159179	2	AA
SNP	509	1513	NC_000913	4193996	G
SNP	510	1514	NC_000913	4215670	T
SNP	511	1515	NC_000913	4223638	C
SNP	512	1516	NC_000913	4238232	T
SNP	513	1517	NC_000913	4272711	T
SNP	514	1518	NC_000913	4275204	T
SNP	515	1519	NC_000913	4276212	T
SNP	516	1520	NC_000913	4276422	T
SNP	517	1521	NC_000913	4281093	A
SNP	518	1522	NC_000913	4283043	A
SNP	519	1523	NC_000913	4283465	A
SNP	520	1524	NC_000913	4284646	A
SNP	521	1525	NC_000913	4285238	A
SNP	522	1526	NC_000913	4288385	A
INS	523	1527,1528	NC_000913	4296381	GC
SNP	524	1529	NC_000913	4296428	A
SNP	525	1530	NC_000913	4297782	A
SNP	526	1531	NC_000913	4298401	A
SNP	527	1532	NC_000913	4306035	T
SNP	528	1533	NC_000913	4306960	A
SNP	529	1534	NC_000913	4307151	A
SNP	530	1535	NC_000913	4318215	A
SNP	531	1536	NC_000913	4320007	A
SNP	532	1537	NC_000913	4320344	A
SNP	533	1538	NC_000913	4320416	A
SNP	534	1539	NC_000913	4320543	A
SNP	535	1540	NC_000913	4321488	A
SNP	536	1541	NC_000913	4321603	C
SNP	537	1542	NC_000913	4322786	A
SNP	538	1543	NC_000913	4325644	T
SNP	539	1544	NC_000913	4328622	C
SNP	540	1545	NC_000913	4331890	T
SNP	541	1546	NC_000913	4340953	T
SNP	542	1547	NC_000913	4344501	A
SNP	543	1548	NC_000913	4344935	A
SNP	544	1550	NC_000913	4390331	T
SNP	545	1551	NC_000913	4402938	A
SNP	546	1552	NC_000913	4410859	T
SNP	547	1553	NC_000913	4414192	A
SNP	548	1554	NC_000913	4430584	T
SNP	549	1555	NC_000913	4431220	T
SNP	550	1556	NC_000913	4437890	T
SNP	551	1557	NC_000913	4439578	A
SNP	552	1558	NC_000913	4440768	A
SNP	553	1559	NC_000913	4445315	T
SNP	554	1560	NC_000913	4445924	T
SNP	555	1561	NC_000913	4446482	T
SNP	556	1562	NC_000913	4448304	T
SNP	557	1563	NC_000913	4463952	A
MOB	558	2086,2112	NC_000913	4466013	IS1	1	9
SNP	559	1564	NC_000913	4473900	T
SNP	560	1565	NC_000913	4475493	C
SNP	561	1566	NC_000913	4476605	A
SNP	562	1567	NC_000913	4489016	T
SNP	563	1568	NC_000913	4492470	A
INS	564	1569	NC_000913	4492583	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
SNP	565	1570	NC_000913	4495194	T
SNP	566	1571	NC_000913	4496168	T
SNP	567	1572	NC_000913	4496885	A
DEL	568	2042,2120	NC_000913	4498182	1336	mediated=IS2
SNP	569	1573	NC_000913	4507424	C
SNP	570	1595	NC_000913	4510238	G
SNP	571	1596	NC_000913	4512293	C
SNP	572	1597	NC_000913	4512501	T
SNP	573	1598	NC_000913	4512642	C
SNP	574	1599	NC_000913	4513044	C
SNP	575	1600	NC_000913	4513841	G
SNP	576	1601	NC_000913	4514139	C
SNP	577	1602	NC_000913	4514287	C
SNP	578	1603	NC_000913	4514983	C
SNP	579	1604	NC_000913	4515348	C
SNP	580	1605	NC_000913	4516110	T
SNP	581	1606	NC_000913	4516378	A
SNP	582	1607	NC_000913	4516632	C
SNP	583	1608	NC_000913	4516959	T
SNP	584	1609	NC_000913	4517127	A
SNP	585	1610	NC_000913	4518627	A
SNP	586	1611	NC_000913	4518681	C
SNP	587	1612	NC_000913	4518793	T
SNP	588	1613	NC_000913	4530252	A
SNP	589	1614	NC_000913	4532063	T
SNP	590	1615	NC_000913	4535073	G
SNP	591	1616	NC_000913	4535189	T
SNP	592	1617	NC_000913	4540111	G
SNP	593	1618	NC_000913	4540114	T
SNP	594	1620	NC_000913	4540431	C
MOB	595	2114,2115	NC_000913	4541425	IS1	-1	8
DEL	596	1621	NC_000913	4542683	1
INS	597	1622	NC_000913	4542692	A
SNP	598	1623	NC_000913	4543047	G
MOB	599	2121,2122	NC_000913	4543064	IS2	1	5
MOB	600	2099,2100	NC_000913	4543608	IS186	-1	6	del_end=1	del_start=1
SNP	601	1624	NC_000913	4544464	T
SNP	602	1625	NC_000913	4546272	C
SNP	603	1626	NC_000913	4549223	G
SNP	604	1627	NC_000913	4553609	A
SNP	605	1628	NC_000913	4556917	G
SNP	606	1629	NC_000913	4560309	A
SNP	607	1630	NC_000913	4563567	C
SNP	608	1631	NC_000913	4564141	G
SNP	609	1632	NC_000913	4567272	A
SNP	610	1633	NC_000913	4569307	C
SNP	611	1635	NC_000913	4591674	G
SNP	612	1636	NC_000913	4591677	C
SNP	613	1637	NC_000913	4591930	C
SNP	614	1638	NC_000913	4591974	A
SNP	615	1639	NC_000913	4592082	A
SNP	616	1640	NC_000913	4592188	T
DEL	617	1641	NC_000913	4595570	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=A
SNP	618	1642	NC_000913	4602089	T
SNP	619	1643	NC_000913	4605702	C
SNP	620	1644	NC_000913	4605791	G
SNP	621	1645	NC_000913	4614170	T
SNP	622	1646	NC_000913	4616022	C
SNP	623	1647	NC_000913	4616073	C
SNP	624	1648	NC_000913	4616514	G
SNP	625	1649	NC_000913	4616535	G
SNP	626	1650	NC_000913	4616648	T
SNP	627	1651	NC_000913	4616682	T
SNP	628	1652	NC_000913	4617053	C
SNP	629	1653	NC_000913	4617138	A
SNP	630	1654	NC_000913	4617238	A
SNP	631	1655	NC_000913	4617409	A
SNP	632	1656	NC_000913	4617412	T
SNP	633	1657	NC_000913	4617415	T
SNP	634	1658	NC_000913	4617436	C
SNP	635	1659	NC_000913	4617499	A
SNP	636	1660	NC_000913	4617532	T
SNP	637	1661	NC_000913	4617565	T
SNP	638	1662	NC_000913	4617574	A
SNP	639	1663	NC_000913	4617616	C
SNP	640	1664	NC_000913	4617631	G
SNP	641	1665	NC_000913	4617928	A
SNP	642	1666	NC_000913	4617976	C
SNP	643	1667	NC_000913	4618030	T
SNP	644	1668	NC_000913	4618055	T
SNP	645	1669	NC_000913	4618069	C
SNP	646	1670	NC_000913	4618075	T
SNP	647	1671	NC_000913	4618276	A
SNP	648	1672	NC_000913	4618312	C
SNP	649	1673	NC_000913	4618483	T
SNP	650	1674	NC_000913	4618489	T
SNP	651	1675	NC_000913	4618702	C
SNP	652	1676	NC_000913	4618717	G
SNP	653	1677	NC_000913	4618804	G
SNP	654	1678	NC_000913	4619026	G
SNP	655	1679	NC_000913	4619080	T
SNP	656	1680	NC_000913	4619131	A
SNP	657	1681	NC_000913	4619134	A
SNP	658	1682	NC_000913	4619197	A
SNP	659	1683	NC_000913	4619335	T
SNP	660	1684	NC_000913	4619338	T
SNP	661	1685	NC_000913	4619359	T
SNP	662	1686	NC_000913	4619393	T
SNP	663	1687	NC_000913	4619454	G
SNP	664	1688	NC_000913	4619917	C
SNP	665	1689	NC_000913	4620067	G
SNP	666	1690	NC_000913	4620145	C
SNP	667	1691	NC_000913	4620150	G
SNP	668	1692	NC_000913	4620154	C
SNP	669	1693	NC_000913	4620157	T
SNP	670	1694	NC_000913	4620160	C
SNP	671	1695	NC_000913	4620223	C
SNP	672	1696	NC_000913	4620256	T
SNP	673	1697	NC_000913	4620358	T
SNP	674	1698	NC_000913	4620385	A
SNP	675	1699	NC_000913	4620415	G
SNP	676	1700	NC_000913	4620427	A
SNP	677	1701	NC_000913	4620559	T
SNP	678	1702	NC_000913	4620571	G
SNP	679	1703	NC_000913	4620637	T
SNP	680	1704	NC_000913	4620652	T
SNP	681	1705	NC_000913	4620706	T
SNP	682	1706	NC_000913	4620709	C
SNP	683	1707	NC_000913	4620742	C
SNP	684	1708	NC_000913	4620763	T
SNP	685	1709	NC_000913	4620766	T
SUB	686	2046,2125	NC_000913	4620828	43	AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT
SNP	687	1710	NC_000913	4621236	T
SNP	688	1711	NC_000913	4621278	T
SNP	689	1712	NC_000913	4621296	G
SNP	690	1713	NC_000913	4621302	C
SNP	691	1714	NC_000913	4621305	G
SNP	692	1715	NC_000913	4621321	G
SNP	693	1716	NC_000913	4621410	C
SNP	694	1717	NC_000913	4621458	G
SNP	695	1718	NC_000913	4621491	G
SNP	696	1719	NC_000913	4621542	C
SNP	697	1735	NC_000913	4623203	C
SNP	698	1736	NC_000913	4623230	C
SNP	699	1737	NC_000913	4623336	C
SNP	700	1738	NC_000913	4623404	A
SNP	701	1739	NC_000913	4623448	C
SNP	702	1740	NC_000913	4623470	T
SNP	703	1741	NC_000913	4623473	A
SNP	704	1742	NC_000913	4623502	T
SNP	705	1743	NC_000913	4623544	G
SNP	706	1744	NC_000913	4623575	C
SNP	707	1745	NC_000913	4623578	T
SNP	708	1746	NC_000913	4623581	G
SNP	709	1747	NC_000913	4623641	A
SNP	710	1748	NC_000913	4623656	C
SNP	711	1749	NC_000913	4623680	A
SNP	712	1750	NC_000913	4623707	T
SNP	713	1751	NC_000913	4623732	G
SNP	714	1752	NC_000913	4623758	C
SNP	715	1753	NC_000913	4623782	A
SNP	716	1754	NC_000913	4623821	G
SNP	717	1755	NC_000913	4623911	T
SNP	718	1756	NC_000913	4623983	C
SNP	719	1757	NC_000913	4624037	C
SNP	720	1758	NC_000913	4624055	C
SNP	721	1759	NC_000913	4624226	A
SNP	722	1760	NC_000913	4624262	G
SNP	723	1761	NC_000913	4624277	A
SNP	724	1762	NC_000913	4624355	C
SNP	725	1763	NC_000913	4624388	C
SNP	726	1764	NC_000913	4624391	G
SNP	727	1765	NC_000913	4624400	T
SNP	728	1766	NC_000913	4624430	C
SNP	729	1767	NC_000913	4624487	G
SNP	730	1768	NC_000913	4624517	G
SNP	731	1769	NC_000913	4624586	C
SNP	732	1770	NC_000913	4624622	T
SNP	733	1771	NC_000913	4624670	T
SNP	734	1772	NC_000913	4625044	G
SNP	735	1773	NC_000913	4625158	G
SNP	736	1774	NC_000913	4625170	T
SNP	737	1775	NC_000913	4625179	A
SNP	738	1776	NC_000913	4625242	C
SNP	739	1777	NC_000913	4625248	T
SNP	740	1778	NC_000913	4625377	C
SNP	741	1779	NC_000913	4625533	T
SNP	742	1780	NC_000913	4625546	T
SNP	743	1781	NC_000913	4626042	C
SNP	744	1782	NC_000913	4626245	T
SNP	745	1783	NC_000913	4626247	G
SNP	746	1784	NC_000913	4626391	G
SNP	747	1785	NC_000913	4626487	C
SNP	748	1786	NC_000913	4626521	C
SNP	749	1787	NC_000913	4626526	G
SNP	750	1788	NC_000913	4626565	T
SNP	751	1789	NC_000913	4626568	A
SNP	752	1790	NC_000913	4626586	C
SNP	753	1791	NC_000913	4626595	G
SNP	754	1792	NC_000913	4626601	T
SNP	755	1793	NC_000913	4626670	T
SNP	756	1794	NC_000913	4626673	A
SNP	757	1795	NC_000913	4626784	A
SNP	758	1796	NC_000913	4626802	C
SNP	759	1797	NC_000913	4626808	C
SNP	760	1798	NC_000913	4626820	G
SUB	761	1799,1800	NC_000913	4626838	2	GT
SNP	762	1801	NC_000913	4626886	T
SNP	763	1802	NC_000913	4626889	G
SNP	764	1803	NC_000913	4626943	C
SNP	765	1804	NC_000913	4627027	C
SNP	766	1805	NC_000913	4627069	T
SNP	767	1806	NC_000913	4627084	A
SNP	768	1807	NC_000913	4627159	T
SNP	769	1808	NC_000913	4627162	A
SNP	770	1809	NC_000913	4627213	A
SUB	771	1810,1811	NC_000913	4627299	2	GA
SNP	772	1812	NC_000913	4627377	G
SNP	773	1813	NC_000913	4627509	C
SNP	774	1814	NC_000913	4627512	T
SNP	775	1815	NC_000913	4627518	G
SNP	776	1816	NC_000913	4627539	G
SNP	777	1817	NC_000913	4627593	A
SNP	778	1818	NC_000913	4627626	C
SNP	779	1819	NC_000913	4627629	T
SNP	780	1820	NC_000913	4627641	T
SNP	781	1821	NC_000913	4627650	C
SNP	782	1822	NC_000913	4627653	T
SNP	783	1823	NC_000913	4627668	C
SNP	784	1824	NC_000913	4627689	C
SNP	785	1825	NC_000913	4627698	A
SNP	786	1826	NC_000913	4627818	G
SNP	787	1827	NC_000913	4627824	T
SNP	788	1828	NC_000913	4627833	C
SNP	789	1829	NC_000913	4627893	T
SNP	790	1830	NC_000913	4627986	G
SNP	791	1831	NC_000913	4628001	C
SNP	792	1832	NC_000913	4628007	A
SNP	793	1833	NC_000913	4628028	T
SNP	794	1834	NC_000913	4628082	T
SNP	795	1835	NC_000913	4628106	T
SNP	796	1836	NC_000913	4628160	C
SNP	797	1837	NC_000913	4628163	T
SNP	798	1838	NC_000913	4628190	A
SNP	799	1839	NC_000913	4628208	A
SNP	800	1840	NC_000913	4628232	G
SNP	801	1841	NC_000913	4628238	T
SNP	802	1842	NC_000913	4628241	C
SNP	803	1843	NC_000913	4628244	T
SNP	804	1844	NC_000913	4628256	T
SNP	805	1845	NC_000913	4628259	C
SNP	806	1846	NC_000913	4628289	T
SNP	807	1847	NC_000913	4628292	G
SNP	808	1848	NC_000913	4628304	A
SNP	809	1849	NC_000913	4628311	T
SNP	810	1850	NC_000913	4628442	G
SNP	811	1851	NC_000913	4628463	C
SNP	812	1852	NC_000913	4628481	C
SNP	813	1853	NC_000913	4628487	T
SNP	814	1854	NC_000913	4628493	C
SNP	815	1855	NC_000913	4628514	G
SNP	816	1856	NC_000913	4628551	C
SNP	817	1857	NC_000913	4628560	G
SNP	818	1858	NC_000913	4628583	A
DEL	819	1859	NC_000913	4628592	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
SNP	820	1860	NC_000913	4628668	T
SNP	821	1861	NC_000913	4628678	C
SNP	822	1862	NC_000913	4628683	A
SNP	823	1863	NC_000913	4628699	G
SNP	824	1864	NC_000913	4628707	A
SNP	825	1865	NC_000913	4628710	C
SNP	826	1866	NC_000913	4628721	T
SUB	827	1867,1868	NC_000913	4628778	2	GG
SNP	828	1869	NC_000913	4628782	A
SNP	829	1870	NC_000913	4628785	C
SNP	830	1871	NC_000913	4628802	T
SNP	831	1872	NC_000913	4628805	T
SNP	832	1873	NC_000913	4628807	G
SNP	833	1874	NC_000913	4628831	A
SNP	834	1875	NC_000913	4628897	T
SNP	835	1876	NC_000913	4628939	A
SNP	836	1877	NC_000913	4628984	G
SNP	837	1878	NC_000913	4628990	G
SNP	838	1879	NC_000913	4629188	A
SNP	839	1880	NC_000913	4629281	A
SNP	840	1881	NC_000913	4629356	T
SNP	841	1882	NC_000913	4629377	T
SNP	842	1883	NC_000913	4629446	G
SNP	843	1884	NC_000913	4629473	T
SNP	844	1885	NC_000913	4629476	C
SNP	845	1886	NC_000913	4629515	G
SNP	846	1887	NC_000913	4629521	A
SNP	847	1888	NC_000913	4629524	G
SNP	848	1889	NC_000913	4629635	C
SNP	849	1890	NC_000913	4629647	T
SNP	850	1891	NC_000913	4629674	G
SNP	851	1892	NC_000913	4629686	T
SNP	852	1893	NC_000913	4629689	C
SNP	853	1894	NC_000913	4629701	C
SNP	854	1895	NC_000913	4629716	G
SNP	855	1896	NC_000913	4629797	G
SNP	856	1897	NC_000913	4629887	C
SNP	857	1898	NC_000913	4629896	C
SNP	858	1899	NC_000913	4630022	C
SNP	859	1900	NC_000913	4630106	G
SNP	860	1901	NC_000913	4630238	A
SNP	861	1902	NC_000913	4630304	G
SNP	862	1903	NC_000913	4630385	A
SNP	863	1904	NC_000913	4630400	G
SNP	864	1905	NC_000913	4630553	G
SUB	865	1906,1907	NC_000913	4630602	2	TT
SNP	866	1908	NC_000913	4630615	T
SNP	867	1909	NC_000913	4630837	C
SNP	868	1910	NC_000913	4630912	A
SNP	869	1911	NC_000913	4630921	A
SNP	870	1912	NC_000913	4630945	T
SNP	871	1913	NC_000913	4630960	C
SNP	872	1914	NC_000913	4630984	T
SNP	873	1915	NC_000913	4631146	A
SNP	874	1916	NC_000913	4631245	T
SNP	875	1917	NC_000913	4631323	T
SNP	876	1918	NC_000913	4634882	T
SNP	877	1919	NC_000913	4635658	C
SNP	878	1920	NC_000913	4635706	A
SNP	879	1921	NC_000913	4635757	T
SNP	880	1922	NC_000913	4635889	C
SNP	881	1923	NC_000913	4636139	C
SUB	882	1924,1925	NC_000913	4636146	2	CT
SNP	883	1926	NC_000913	4636175	T
SNP	884	1927	NC_000913	4636180	T
SNP	885	1928	NC_000913	4636186	C
SNP	886	1929	NC_000913	4636201	A
SNP	887	1930	NC_000913	4636309	T
SNP	888	1931	NC_000913	4636385	T
SNP	889	1932	NC_000913	4636411	T
SNP	890	1933	NC_000913	4636466	A
SNP	891	1934	NC_000913	4636474	G
SNP	892	1935	NC_000913	4636493	C
SNP	893	1936	NC_000913	4636513	G
SNP	894	1937	NC_000913	4636516	A
SNP	895	1938	NC_000913	4636543	A
SNP	896	1939	NC_000913	4636555	G
SNP	897	1940	NC_000913	4636591	T
SNP	898	1941	NC_000913	4636610	T
SNP	899	1942	NC_000913	4636717	C
SNP	900	1943	NC_000913	4636749	G
SNP	901	1944	NC_000913	4636767	T
SNP	902	1945	NC_000913	4636821	A
SNP	903	1946	NC_000913	4636827	T
SNP	904	1947	NC_000913	4636993	T
SNP	905	1948	NC_000913	4637001	T
SNP	906	1949	NC_000913	4637037	G
SNP	907	1950	NC_000913	4637133	G
SNP	908	1951	NC_000913	4637151	G
SNP	909	1952	NC_000913	4637269	C
SNP	910	1953	NC_000913	4637322	C
SNP	911	1954	NC_000913	4637346	C
SNP	912	1955	NC_000913	4637379	T
SNP	913	1956	NC_000913	4637382	T
SNP	914	1957	NC_000913	4637385	A
SNP	915	1958	NC_000913	4637391	C
SNP	916	1959	NC_000913	4637409	G
SNP	917	1960	NC_000913	4637412	T
SNP	918	1961	NC_000913	4637478	T
SNP	919	1962	NC_000913	4637481	G
SNP	920	1963	NC_000913	4637487	C
SNP	921	1964	NC_000913	4637523	C
SNP	922	1965	NC_000913	4637553	A
SNP	923	1966	NC_000913	4637577	C
SNP	924	1967	NC_000913	4637675	T
SNP	925	1968	NC_000913	4637697	T
SNP	926	1969	NC_000913	4637742	C
SNP	927	1970	NC_000913	4637751	A
SNP	928	1971	NC_000913	4637759	T
SNP	929	1972	NC_000913	4637766	T
SNP	930	1973	NC_000913	4637775	T
SNP	931	1974	NC_000913	4637814	G
SNP	932	1975	NC_000913	4637857	C
SNP	933	1976	NC_000913	4637862	A
SNP	934	1977	NC_000913	4637896	G
SNP	935	1978	NC_000913	4637898	C
SNP	936	1979	NC_000913	4637943	G
SNP	937	1980	NC_000913	4637976	G
SNP	938	1981	NC_000913	4638142	C
SNP	939	1982	NC_000913	4638210	C
SNP	940	1983	NC_000913	4638212	C
SNP	941	1984	NC_000913	4638214	T
SNP	942	1985	NC_000913	4638264	A
SNP	943	1986	NC_000913	4638282	C
SNP	944	1987	NC_000913	4638354	T
SNP	945	1988	NC_000913	4638532	C
SNP	946	1989	NC_000913	4638567	G
SNP	947	1990	NC_000913	4638587	T
SNP	948	1991	NC_000913	4638600	C
SNP	949	1992	NC_000913	4638735	C
SNP	950	1993	NC_000913	4638818	C
SNP	951	1994	NC_000913	4638883	T
SNP	952	1995	NC_000913	4638885	G
SNP	953	1996	NC_000913	4638927	A
SNP	954	1997	NC_000913	4639005	C
SNP	955	1998	NC_000913	4639023	G
SNP	956	1999	NC_000913	4639053	G
SNP	957	2000	NC_000913	4639217	T
SNP	958	2001	NC_000913	4639261	T
SNP	959	2002	NC_000913	4639284	G
SNP	960	2003	NC_000913	4639299	C
SNP	961	2004	NC_000913	4639303	C
SNP	962	2005	NC_000913	4639440	T
SNP	963	2006	NC_000913	4639502	T
SNP	964	2007	NC_000913	4639510	C
SNP	965	2008	NC_000913	4639512	A
SNP	966	2009	NC_000913	4639608	A
SNP	967	2010	NC_000913	4639632	G
SNP	968	2011	NC_000913	4639719	T
SNP	969	2012	NC_000913	4639764	A
SNP	970	2013	NC_000913	4639956	C
SNP	971	2014	NC_000913	4640785	T
SNP	972	2015	NC_000913	4640864	G
SNP	973	2016	NC_000913	4640908	T
SNP	974	2017	NC_000913	4640924	G
SNP	975	2018	NC_000913	4641022	T
SNP	976	2019	NC_000913	4641031	A
SNP	977	2020	NC_000913	4641131	C
SNP	978	2021	NC_000913	4641208	T
SNP	979	2022	NC_000913	4641217	A
SNP	980	2023	NC_000913	4641226	A
SNP	981	2024	NC_000913	4641296	C
SNP	982	2025	NC_000913	4641352	A
SNP	983	2026	NC_000913	4641382	A
SNP	984	2027	NC_000913	4641428	A
SUB	985	2028,2029	NC_000913	4641439	2	CA
SNP	986	2030	NC_000913	4641483	T
SNP	987	2031	NC_000913	4641488	G
SNP	988	2032	NC_000913	4641544	G
RA	989	.	NC_000913	310	0	T	.	bias_e_value=3683410	bias_p_value=0.793556	consensus_score=300.8	fisher_strand_p_value=0.430769	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=37/27	major_frequency=9.846e-01	minor_base=T	minor_cov=0/1	new_cov=37/27	polymorphism_frequency=9.846e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=37/28
RA	990	.	NC_000913	393	0	T	G	consensus_score=209.8	frequency=1	major_base=G	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	991	.	NC_000913	588	0	G	A	consensus_score=301.8	frequency=1	major_base=A	major_cov=51/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/40
RA	992	.	NC_000913	774	0	T	C	consensus_score=301.4	frequency=1	major_base=C	major_cov=34/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/52
RA	993	.	NC_000913	867	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=290.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/50	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=35/50	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/51
RA	994	.	NC_000913	939	0	G	A	consensus_score=328.1	frequency=1	major_base=A	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	995	.	NC_000913	966	0	T	C	consensus_score=312.7	frequency=1	major_base=C	major_cov=42/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/47
RA	996	.	NC_000913	969	0	T	G	bias_e_value=2729300	bias_p_value=0.588002	consensus_score=290.3	fisher_strand_p_value=0.243871	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=42/44	major_frequency=9.663e-01	minor_base=T	minor_cov=0/3	new_cov=42/44	polymorphism_frequency=9.663e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=42/47
RA	997	.	NC_000913	1206	0	A	T	consensus_score=234.9	frequency=1	major_base=T	major_cov=29/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/40
RA	998	.	NC_000913	1278	0	C	T	consensus_score=218.8	frequency=1	major_base=T	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	999	.	NC_000913	1299	0	T	C	consensus_score=226.8	frequency=1	major_base=C	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	1000	.	NC_000913	1302	0	T	C	consensus_score=231.4	frequency=1	major_base=C	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	1001	.	NC_000913	1323	0	C	T	consensus_score=229.2	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	1002	.	NC_000913	1341	0	C	G	consensus_score=188.6	frequency=1	major_base=G	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	1003	.	NC_000913	1407	0	C	T	consensus_score=222.5	frequency=1	major_base=T	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	1004	.	NC_000913	1425	0	A	G	consensus_score=219.6	frequency=1	major_base=G	major_cov=37/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/28
RA	1005	.	NC_000913	1509	0	A	G	consensus_score=203.6	frequency=1	major_base=G	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	1006	.	NC_000913	1593	0	A	G	bias_e_value=2644990	bias_p_value=0.569838	consensus_score=206.0	fisher_strand_p_value=0.231235	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=34/30	major_frequency=9.697e-01	minor_base=A	minor_cov=0/2	new_cov=34/30	polymorphism_frequency=9.697e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/2	total_cov=34/32
RA	1007	.	NC_000913	1797	0	G	A	bias_e_value=4552850	bias_p_value=0.980868	consensus_score=255.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.810876	major_base=A	major_cov=46/36	major_frequency=9.762e-01	minor_base=G	minor_cov=1/1	new_cov=46/36	polymorphism_frequency=9.762e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/1	total_cov=47/37
RA	1008	.	NC_000913	1860	0	T	A	bias_e_value=4634240	bias_p_value=0.998403	consensus_score=323.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.944022	major_base=A	major_cov=57/42	major_frequency=9.802e-01	minor_base=T	minor_cov=1/1	new_cov=57/42	polymorphism_frequency=9.802e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/1	total_cov=58/43
RA	1009	.	NC_000913	1875	0	A	G	bias_e_value=4629430	bias_p_value=0.997367	consensus_score=366.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.928313	major_base=G	major_cov=70/39	major_frequency=9.820e-01	minor_base=A	minor_cov=1/1	new_cov=70/39	polymorphism_frequency=9.820e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=1/1	total_cov=71/40
RA	1010	.	NC_000913	1884	0	T	A	bias_e_value=4633810	bias_p_value=0.998311	consensus_score=378.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.942437	major_base=A	major_cov=73/41	major_frequency=9.828e-01	minor_base=T	minor_cov=1/1	new_cov=73/41	polymorphism_frequency=9.828e-01	polymorphism_score=-0.9	prediction=consensus	ref_cov=1/1	total_cov=74/42
RA	1011	.	NC_000913	2038	0	C	T	consensus_score=382.6	frequency=1	major_base=T	major_cov=62/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/53
RA	1012	.	NC_000913	2108	0	A	T	bias_e_value=3904080	bias_p_value=0.841097	consensus_score=410.0	fisher_strand_p_value=0.492188	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=65/62	major_frequency=9.922e-01	minor_base=G	minor_cov=0/1	new_cov=65/62	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/63
RA	1013	.	NC_000913	2116	0	T	C	consensus_score=438.1	frequency=1	major_base=C	major_cov=69/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/60
RA	1014	.	NC_000913	2211	0	A	T	consensus_score=374.4	frequency=1	major_base=T	major_cov=46/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/75
RA	1015	.	NC_000913	2247	0	T	A	bias_e_value=3520480	bias_p_value=0.758453	consensus_score=391.9	fisher_strand_p_value=0.391304	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/70	major_frequency=9.913e-01	minor_base=C	minor_cov=1/0	new_cov=44/70	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/70
RA	1016	.	NC_000913	2307	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=353.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/66	major_frequency=9.911e-01	minor_base=G	minor_cov=0/1	new_cov=45/66	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/67
RA	1017	.	NC_000913	2310	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=356.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/66	major_frequency=9.911e-01	minor_base=G	minor_cov=0/1	new_cov=45/66	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=45/67
RA	1018	.	NC_000913	2343	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=397.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=58/59	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=58/59	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=59/60
RA	1019	.	NC_000913	2373	0	G	A	consensus_score=374.6	frequency=1	major_base=A	major_cov=65/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/52
RA	1020	.	NC_000913	2382	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=397.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=65/49	major_frequency=9.913e-01	minor_base=A	minor_cov=1/0	new_cov=65/49	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=66/49
RA	1021	.	NC_000913	2469	0	C	T	bias_e_value=3740410	bias_p_value=0.805836	consensus_score=303.1	fisher_strand_p_value=0.445652	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/40	major_frequency=9.891e-01	minor_base=G	minor_cov=0/1	new_cov=51/40	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/41
RA	1022	.	NC_000913	2508	0	A	G	bias_e_value=3539220	bias_p_value=0.762492	consensus_score=306.6	fisher_strand_p_value=0.423913	frequency=1	ks_quality_p_value=0.93329	major_base=G	major_cov=53/38	major_frequency=9.891e-01	minor_base=C	minor_cov=0/1	new_cov=53/38	polymorphism_frequency=9.891e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	1023	.	NC_000913	2595	0	C	T	consensus_score=353.9	frequency=1	major_base=T	major_cov=56/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/48
RA	1024	.	NC_000913	2597	0	T	C	consensus_score=359.3	frequency=1	major_base=C	major_cov=56/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/48
RA	1025	.	NC_000913	2676	0	C	T	consensus_score=317.6	frequency=1	major_base=T	major_cov=42/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/53
RA	1026	.	NC_000913	2709	0	A	G	consensus_score=351.0	frequency=1	major_base=G	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	1027	.	NC_000913	2760	0	T	C	consensus_score=363.2	frequency=1	major_base=C	major_cov=50/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/54
RA	1028	.	NC_000913	3025	0	A	G	consensus_score=288.3	frequency=1	major_base=G	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	1029	.	NC_000913	3028	0	G	T	consensus_score=280.4	frequency=1	major_base=T	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	1030	.	NC_000913	3031	0	T	C	consensus_score=285.4	frequency=1	major_base=C	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	1031	.	NC_000913	3055	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=297.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/45	major_frequency=9.890e-01	minor_base=C	minor_cov=0/1	new_cov=45/45	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=45/46
RA	1032	.	NC_000913	3073	0	G	A	bias_e_value=3777050	bias_p_value=0.81373	consensus_score=286.7	fisher_strand_p_value=0.455556	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/49	major_frequency=9.889e-01	minor_base=C	minor_cov=1/0	new_cov=40/49	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=41/50
RA	1033	.	NC_000913	3097	0	T	C	consensus_score=294.1	frequency=1	major_base=C	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	1034	.	NC_000913	3142	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=265.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/40	major_frequency=9.877e-01	minor_base=C	minor_cov=0/1	new_cov=40/40	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=40/41
RA	1035	.	NC_000913	3196	0	C	A	consensus_score=221.3	frequency=1	major_base=A	major_cov=30/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/40
RA	1036	.	NC_000913	3199	0	T	A	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=211.7	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/40	major_frequency=9.857e-01	minor_base=C	minor_cov=1/0	new_cov=29/40	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/40
RA	1037	.	NC_000913	3244	0	C	T	bias_e_value=3627200	bias_p_value=0.781445	consensus_score=224.4	fisher_strand_p_value=0.416667	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/42	major_frequency=9.861e-01	minor_base=C	minor_cov=1/0	new_cov=29/42	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/42
RA	1038	.	NC_000913	3424	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=267.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/42	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=38/42	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	1039	.	NC_000913	3520	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=313.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/44	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=49/44	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	1040	.	NC_000913	3547	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=279.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/43	major_frequency=9.884e-01	minor_base=C	minor_cov=1/0	new_cov=42/43	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=43/43
RA	1041	.	NC_000913	3622	0	A	T	consensus_score=267.6	frequency=1	major_base=T	major_cov=52/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/27
RA	1042	.	NC_000913	3763	0	C	T	consensus_score=238.9	frequency=1	major_base=T	major_cov=45/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/26
RA	1043	.	NC_000913	3937	0	A	G	consensus_score=291.2	frequency=1	major_base=G	major_cov=34/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/52
RA	1044	.	NC_000913	4102	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=326.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/48	major_frequency=9.899e-01	minor_base=A	minor_cov=1/0	new_cov=50/48	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	1045	.	NC_000913	4336	0	A	G	consensus_score=278.7	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	1046	.	NC_000913	4351	0	A	G	bias_e_value=3912600	bias_p_value=0.842933	consensus_score=287.3	fisher_strand_p_value=0.494787	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=42/43	major_frequency=9.770e-01	minor_base=T	minor_cov=0/2	new_cov=42/43	polymorphism_frequency=9.770e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	1047	.	NC_000913	4363	0	G	A	consensus_score=278.5	frequency=1	major_base=A	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	1048	.	NC_000913	4420	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=248.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=39/41	major_frequency=9.877e-01	minor_base=T	minor_cov=0/1	new_cov=39/41	polymorphism_frequency=9.877e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=39/42
RA	1049	.	NC_000913	4441	0	G	A	bias_e_value=4210450	bias_p_value=0.907101	consensus_score=240.6	fisher_strand_p_value=0.601188	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/40	major_frequency=9.615e-01	minor_base=G	minor_cov=2/1	new_cov=35/40	polymorphism_frequency=9.615e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=2/1	total_cov=37/41
RA	1050	.	NC_000913	4442	0	A	G	bias_e_value=4210450	bias_p_value=0.907101	consensus_score=245.3	fisher_strand_p_value=0.601188	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=35/40	major_frequency=9.615e-01	minor_base=A	minor_cov=2/1	new_cov=35/40	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/1	total_cov=37/41
RA	1051	.	NC_000913	4780	0	T	C	consensus_score=268.4	frequency=1	major_base=C	major_cov=53/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/24
RA	1052	.	NC_000913	4804	0	T	G	consensus_score=276.3	frequency=1	major_base=G	major_cov=58/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/22
RA	1053	.	NC_000913	4822	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=240.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=62/15	major_frequency=9.872e-01	minor_base=A	minor_cov=1/0	new_cov=62/15	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/16
RA	1054	.	NC_000913	5067	0	C	.	bias_e_value=4641580	bias_p_value=0.999984	consensus_score=609.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994349	major_base=.	major_cov=68/63	major_frequency=9.924e-01	minor_base=A	minor_cov=1/0	new_cov=68/63	polymorphism_frequency=9.924e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/0	total_cov=69/63
RA	1055	.	NC_000913	5099	0	T	C	consensus_score=483.0	frequency=1	major_base=C	major_cov=62/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/76
RA	1056	.	NC_000913	5171	0	C	T	bias_e_value=4019180	bias_p_value=0.865894	consensus_score=435.3	fisher_strand_p_value=0.52907	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/79	major_frequency=9.845e-01	minor_base=G	minor_cov=0/2	new_cov=48/79	polymorphism_frequency=9.845e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/81
RA	1057	.	NC_000913	5183	0	A	C	consensus_score=448.1	frequency=1	major_base=C	major_cov=48/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/80
RA	1058	.	NC_000913	5234	0	G	A	consensus_score=380.6	frequency=1	major_base=A	major_cov=36/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/80
RA	1059	.	NC_000913	5442	0	T	C	consensus_score=252.2	frequency=1	major_base=C	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	1060	.	NC_000913	5603	0	T	G	consensus_score=278.1	frequency=1	major_base=G	major_cov=48/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/32
RA	1061	.	NC_000913	5642	0	A	C	consensus_score=264.3	frequency=1	major_base=C	major_cov=53/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/27
RA	1062	.	NC_000913	5732	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=402.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=72/43	major_frequency=9.914e-01	minor_base=A	minor_cov=1/0	new_cov=72/43	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/43
RA	1063	.	NC_000913	5806	0	G	A	consensus_score=398.6	frequency=1	major_base=A	major_cov=65/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/53
RA	1064	.	NC_000913	5851	0	G	T	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=403.4	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=68/50	major_frequency=9.916e-01	minor_base=G	minor_cov=0/1	new_cov=68/50	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=68/51
RA	1065	.	NC_000913	6106	0	G	C	consensus_score=334.3	frequency=1	major_base=C	major_cov=37/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/57
RA	1066	.	NC_000913	6239	0	G	T	consensus_score=358.5	frequency=1	major_base=T	major_cov=60/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/43
RA	1067	.	NC_000913	6349	0	C	T	consensus_score=297.1	frequency=1	major_base=T	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	1068	.	NC_000913	6502	0	T	A	bias_e_value=2465270	bias_p_value=0.531119	consensus_score=341.6	fisher_strand_p_value=0.205787	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/56	major_frequency=9.806e-01	minor_base=G	minor_cov=2/0	new_cov=45/56	polymorphism_frequency=9.806e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/56
RA	1069	.	NC_000913	6574	0	A	G	consensus_score=322.9	frequency=1	major_base=G	major_cov=43/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/50
RA	1070	.	NC_000913	6595	0	T	C	bias_e_value=2287430	bias_p_value=0.492805	consensus_score=335.6	fisher_strand_p_value=0.182424	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/57	major_frequency=9.800e-01	minor_base=A	minor_cov=2/0	new_cov=41/57	polymorphism_frequency=9.800e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/57
RA	1071	.	NC_000913	6748	0	G	A	consensus_score=322.5	frequency=1	major_base=A	major_cov=37/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/59
RA	1072	.	NC_000913	6850	0	A	G	consensus_score=368.0	frequency=1	major_base=G	major_cov=53/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/52
RA	1073	.	NC_000913	6898	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=301.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=45/46	major_frequency=9.891e-01	minor_base=T	minor_cov=0/1	new_cov=45/46	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/47
RA	1074	.	NC_000913	6933	0	G	A	consensus_score=311.9	frequency=1	major_base=A	major_cov=45/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/49
RA	1075	.	NC_000913	7132	0	A	C	bias_e_value=3405710	bias_p_value=0.733728	consensus_score=287.0	fisher_strand_p_value=0.365854	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/52	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=29/52	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/52
RA	1076	.	NC_000913	7297	0	T	C	consensus_score=211.9	frequency=1	major_base=C	major_cov=22/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/39
RA	1077	.	NC_000913	7342	0	G	C	consensus_score=155.2	frequency=1	major_base=C	major_cov=17/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/29
RA	1078	.	NC_000913	7384	0	T	C	bias_e_value=3162220	bias_p_value=0.681271	consensus_score=129.0	fisher_strand_p_value=0.317073	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=12/28	major_frequency=9.756e-01	minor_base=T	minor_cov=1/0	new_cov=12/28	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=13/28
RA	1079	.	NC_000913	7395	0	T	C	consensus_score=136.7	frequency=1	major_base=C	major_cov=12/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/29
RA	1080	.	NC_000913	7414	0	G	A	consensus_score=140.3	frequency=1	major_base=A	major_cov=13/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/29
RA	1081	.	NC_000913	7456	0	G	T	consensus_score=140.5	frequency=1	major_base=T	major_cov=13/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/31
RA	1082	.	NC_000913	7459	0	G	C	bias_e_value=3043460	bias_p_value=0.655685	consensus_score=148.5	fisher_strand_p_value=0.295455	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=12/31	major_frequency=9.773e-01	minor_base=T	minor_cov=1/0	new_cov=12/31	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/31
RA	1083	.	NC_000913	7474	0	T	C	consensus_score=159.5	frequency=1	major_base=C	major_cov=14/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/33
RA	1084	.	NC_000913	7479	0	C	T	consensus_score=155.7	frequency=1	major_base=T	major_cov=15/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/32
RA	1085	.	NC_000913	7498	0	A	G	consensus_score=146.2	frequency=1	major_base=G	major_cov=14/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/31
RA	1086	.	NC_000913	7598	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=163.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=29/18	major_frequency=9.792e-01	minor_base=T	minor_cov=1/0	new_cov=29/18	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/18
RA	1087	.	NC_000913	7600	0	G	A	consensus_score=148.9	frequency=1	major_base=A	major_cov=30/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/18
RA	1088	.	NC_000913	7618	0	T	C	consensus_score=158.2	frequency=1	major_base=C	major_cov=32/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/15
RA	1089	.	NC_000913	7624	0	C	G	consensus_score=150.8	frequency=1	major_base=G	major_cov=32/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/15
RA	1090	.	NC_000913	7627	0	A	G	consensus_score=151.3	frequency=1	major_base=G	major_cov=32/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/15
RA	1091	.	NC_000913	7681	0	A	G	consensus_score=145.7	frequency=1	major_base=G	major_cov=32/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/12
RA	1092	.	NC_000913	7711	0	A	T	consensus_score=166.5	frequency=1	major_base=T	major_cov=37/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/13
RA	1093	.	NC_000913	7939	0	G	A	consensus_score=285.5	frequency=1	major_base=A	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	1094	.	NC_000913	8963	0	G	T	consensus_score=256.7	frequency=1	major_base=T	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	1095	.	NC_000913	8975	0	G	T	consensus_score=247.3	frequency=1	major_base=T	major_cov=35/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	1096	.	NC_000913	8976	0	G	A	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=248.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996929	major_base=A	major_cov=35/41	major_frequency=9.870e-01	minor_base=G	minor_cov=0/1	new_cov=35/41	polymorphism_frequency=9.870e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/1	total_cov=35/42
RA	1097	.	NC_000913	8996	0	G	T	consensus_score=276.3	frequency=1	major_base=T	major_cov=41/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	1098	.	NC_000913	9488	0	G	A	bias_e_value=3330100	bias_p_value=0.717438	consensus_score=342.2	fisher_strand_p_value=0.35	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/65	major_frequency=9.900e-01	minor_base=C	minor_cov=1/0	new_cov=34/65	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/65
RA	1099	.	NC_000913	9623	0	C	A	consensus_score=355.6	frequency=1	major_base=A	major_cov=42/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/62
RA	1100	.	NC_000913	9665	0	G	T	consensus_score=291.3	frequency=1	major_base=T	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	1101	.	NC_000913	9668	0	C	T	consensus_score=285.6	frequency=1	major_base=T	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	1102	.	NC_000913	9754	0	A	C	consensus_score=278.9	frequency=1	major_base=C	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	1103	.	NC_000913	9839	0	G	A	consensus_score=265.6	frequency=1	major_base=A	major_cov=52/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/32
RA	1104	.	NC_000913	9851	0	A	T	bias_e_value=3411460	bias_p_value=0.734967	consensus_score=263.5	fisher_strand_p_value=0.367089	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/28	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=50/28	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/29
RA	1105	.	NC_000913	10006	0	G	A	bias_e_value=4631100	bias_p_value=0.997728	consensus_score=321.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.933346	major_base=A	major_cov=47/51	major_frequency=9.800e-01	minor_base=G	minor_cov=1/1	new_cov=47/51	polymorphism_frequency=9.800e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=1/1	total_cov=49/52
RA	1106	.	NC_000913	10015	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=328.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/50	major_frequency=9.900e-01	minor_base=C	minor_cov=1/0	new_cov=49/50	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/50
RA	1107	.	NC_000913	10024	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=319.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/46	major_frequency=9.896e-01	minor_base=C	minor_cov=1/0	new_cov=49/46	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/46
RA	1108	.	NC_000913	10099	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=307.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/50	major_frequency=9.783e-01	minor_base=G	minor_cov=1/1	new_cov=40/50	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=41/51
RA	1109	.	NC_000913	10260	0	G	A	consensus_score=334.1	frequency=1	major_base=A	major_cov=56/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/43
RA	1110	.	NC_000913	10336	0	A	G	bias_e_value=3841560	bias_p_value=0.827628	consensus_score=314.2	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=50/44	major_frequency=9.895e-01	minor_base=T	minor_cov=0/1	new_cov=50/44	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	1111	.	NC_000913	10548	0	T	A	consensus_score=240.1	frequency=1	major_base=A	major_cov=19/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/55
RA	1112	.	NC_000913	10637	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=245.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=25/49	major_frequency=9.867e-01	minor_base=G	minor_cov=0/1	new_cov=25/49	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/50
RA	1113	.	NC_000913	10642	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=249.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=25/48	major_frequency=9.865e-01	minor_base=A	minor_cov=0/1	new_cov=25/48	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=25/49
RA	1114	.	NC_000913	10703	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=214.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/37	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=27/37	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/38
RA	1115	.	NC_000913	10718	0	G	A	bias_e_value=3599180	bias_p_value=0.775409	consensus_score=202.8	fisher_strand_p_value=0.409836	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/36	major_frequency=9.836e-01	minor_base=C	minor_cov=1/0	new_cov=24/36	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/36
RA	1116	.	NC_000913	10747	0	G	A	consensus_score=186.0	frequency=1	major_base=A	major_cov=22/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/34
RA	1117	.	NC_000913	10751	0	C	T	consensus_score=179.8	frequency=1	major_base=T	major_cov=22/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/31
RA	1118	.	NC_000913	10754	0	A	G	consensus_score=185.2	frequency=1	major_base=G	major_cov=22/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/31
RA	1119	.	NC_000913	10757	0	T	C	consensus_score=182.4	frequency=1	major_base=C	major_cov=22/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/31
RA	1120	.	NC_000913	10772	0	C	A	consensus_score=169.9	frequency=1	major_base=A	major_cov=26/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/25
RA	1121	.	NC_000913	10802	0	T	C	consensus_score=159.8	frequency=1	major_base=C	major_cov=27/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/19
RA	1122	.	NC_000913	10840	0	G	A	consensus_score=173.5	frequency=1	major_base=A	major_cov=30/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/22
RA	1123	.	NC_000913	10865	0	A	G	consensus_score=180.4	frequency=1	major_base=G	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	1124	.	NC_000913	10973	0	T	A	consensus_score=177.5	frequency=1	major_base=A	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	1125	.	NC_000913	10985	0	A	G	consensus_score=187.9	frequency=1	major_base=G	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	1126	.	NC_000913	11021	0	T	C	consensus_score=259.2	frequency=1	major_base=C	major_cov=43/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/33
RA	1127	.	NC_000913	11063	0	C	T	consensus_score=266.3	frequency=1	major_base=T	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	1128	.	NC_000913	11156	0	G	A	bias_e_value=3777050	bias_p_value=0.81373	consensus_score=284.0	fisher_strand_p_value=0.455556	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/40	major_frequency=9.889e-01	minor_base=C	minor_cov=0/1	new_cov=49/40	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/41
RA	1129	.	NC_000913	11225	0	C	T	bias_e_value=3825300	bias_p_value=0.824125	consensus_score=386.6	fisher_strand_p_value=0.469027	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=60/52	major_frequency=9.912e-01	minor_base=G	minor_cov=0/1	new_cov=60/52	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/53
RA	1130	.	NC_000913	11366	0	C	T	consensus_score=398.5	frequency=1	major_base=T	major_cov=69/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/48
RA	1131	.	NC_000913	11439	0	C	G	bias_e_value=3713680	bias_p_value=0.800077	consensus_score=385.5	fisher_strand_p_value=0.438596	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=64/49	major_frequency=9.912e-01	minor_base=A	minor_cov=0/1	new_cov=64/49	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/50
RA	1132	.	NC_000913	11481	0	G	A	consensus_score=454.3	frequency=1	major_base=A	major_cov=63/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/70
RA	1133	.	NC_000913	11541	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=426.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=47/76	major_frequency=9.919e-01	minor_base=G	minor_cov=0/1	new_cov=47/76	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/77
RA	1134	.	NC_000913	11695	0	G	A	consensus_score=425.9	frequency=1	major_base=A	major_cov=63/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/61
RA	1135	.	NC_000913	11814	0	G	A	consensus_score=384.2	frequency=1	major_base=A	major_cov=69/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/48
RA	1136	.	NC_000913	11854	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=383.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=68/44	major_frequency=9.912e-01	minor_base=A	minor_cov=1/0	new_cov=68/44	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=69/45
RA	1137	.	NC_000913	11861	0	C	T	bias_e_value=2074550	bias_p_value=0.446943	consensus_score=388.4	fisher_strand_p_value=0.156599	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=71/45	major_frequency=9.831e-01	minor_base=G	minor_cov=0/2	new_cov=71/45	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=71/48
RA	1138	.	NC_000913	11925	0	A	C	consensus_score=400.7	frequency=1	major_base=C	major_cov=59/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/57
RA	1139	.	NC_000913	12026	0	T	G	consensus_score=434.2	frequency=1	major_base=G	major_cov=46/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/80
RA	1140	.	NC_000913	12237	0	C	T	bias_e_value=4641510	bias_p_value=0.99997	consensus_score=272.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992314	major_base=T	major_cov=39/41	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=39/41	polymorphism_frequency=9.877e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	1141	.	NC_000913	12309	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=290.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=50/34	major_frequency=9.882e-01	minor_base=A	minor_cov=1/0	new_cov=50/34	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/34
RA	1142	.	NC_000913	12357	0	T	C	consensus_score=275.4	frequency=1	major_base=C	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	1143	.	NC_000913	12384	0	T	C	consensus_score=290.3	frequency=1	major_base=C	major_cov=49/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/35
RA	1144	.	NC_000913	12507	0	T	C	consensus_score=300.9	frequency=1	major_base=C	major_cov=47/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/39
RA	1145	.	NC_000913	12714	0	C	T	consensus_score=300.7	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	1146	.	NC_000913	12846	0	G	T	consensus_score=293.6	frequency=1	major_base=T	major_cov=41/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	1147	.	NC_000913	12879	0	T	C	bias_e_value=3754540	bias_p_value=0.80888	consensus_score=288.9	fisher_strand_p_value=0.449438	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=39/49	major_frequency=9.888e-01	minor_base=A	minor_cov=1/0	new_cov=39/49	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	1148	.	NC_000913	13014	0	A	G	consensus_score=263.5	frequency=1	major_base=G	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	1149	.	NC_000913	13029	0	C	T	consensus_score=289.1	frequency=1	major_base=T	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	1150	.	NC_000913	13320	0	A	G	consensus_score=297.5	frequency=1	major_base=G	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	1151	.	NC_000913	13539	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=317.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=41/48	major_frequency=9.889e-01	minor_base=T	minor_cov=0/1	new_cov=41/48	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/49
RA	1152	.	NC_000913	13866	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=354.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=58/47	major_frequency=9.906e-01	minor_base=C	minor_cov=1/0	new_cov=58/47	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/47
RA	1153	.	NC_000913	13932	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=353.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=59/42	major_frequency=9.902e-01	minor_base=A	minor_cov=1/0	new_cov=59/42	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=60/42
RA	1154	.	NC_000913	14223	0	G	A	bias_e_value=3812300	bias_p_value=0.821324	consensus_score=331.9	fisher_strand_p_value=0.465347	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/54	major_frequency=9.901e-01	minor_base=C	minor_cov=1/0	new_cov=46/54	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/54
RA	1155	.	NC_000913	14232	0	G	A	consensus_score=348.1	frequency=1	major_base=A	major_cov=47/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/57
RA	1156	.	NC_000913	14401	0	C	T	consensus_score=261.9	frequency=1	major_base=T	major_cov=27/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/52
RA	1157	.	NC_000913	14647	0	T	C	consensus_score=222.6	frequency=1	major_base=C	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	1158	.	NC_000913	14686	0	C	T	bias_e_value=3850220	bias_p_value=0.829494	consensus_score=212.4	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/29	major_frequency=9.841e-01	minor_base=G	minor_cov=0/1	new_cov=33/29	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	1159	.	NC_000913	14698	0	C	T	consensus_score=195.4	frequency=1	major_base=T	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	1160	.	NC_000913	14701	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=192.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/29	major_frequency=9.831e-01	minor_base=A	minor_cov=1/0	new_cov=29/29	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	1161	.	NC_000913	14704	0	A	G	consensus_score=203.1	frequency=1	major_base=G	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	1162	.	NC_000913	14956	0	G	C	bias_e_value=1200550	bias_p_value=0.258647	consensus_score=175.2	fisher_strand_p_value=0.0709419	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=28/23	major_frequency=9.107e-01	minor_base=A	minor_cov=5/0	new_cov=28/23	polymorphism_frequency=9.107e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/23
RA	1163	.	NC_000913	15073	0	A	T	consensus_score=193.1	frequency=1	major_base=T	major_cov=23/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/36
RA	1164	.	NC_000913	15172	0	A	G	consensus_score=212.7	frequency=1	major_base=G	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	1165	.	NC_000913	15174	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=206.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/33	major_frequency=9.841e-01	minor_base=G	minor_cov=0/1	new_cov=29/33	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/34
RA	1166	.	NC_000913	15226	0	C	T	bias_e_value=3599180	bias_p_value=0.775409	consensus_score=199.0	fisher_strand_p_value=0.409836	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/36	major_frequency=9.836e-01	minor_base=C	minor_cov=1/0	new_cov=24/36	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=25/36
RA	1167	.	NC_000913	15328	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=169.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/26	major_frequency=9.815e-01	minor_base=C	minor_cov=1/0	new_cov=27/26	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=28/26
RA	1168	.	NC_000913	15338	0	A	T	bias_e_value=3760250	bias_p_value=0.81011	consensus_score=160.2	fisher_strand_p_value=0.45098	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/22	major_frequency=9.804e-01	minor_base=C	minor_cov=0/1	new_cov=28/22	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/23
RA	1169	.	NC_000913	15369	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=188.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/27	major_frequency=9.833e-01	minor_base=C	minor_cov=1/0	new_cov=32/27	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	1170	.	NC_000913	16749	0	T	A	consensus_score=227.2	frequency=1	major_base=A	major_cov=27/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/45
RA	1171	.	NC_000913	16966	0	A	G	consensus_score=239.7	frequency=1	major_base=G	major_cov=51/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/18
RA	1172	.	NC_000913	16981	0	G	A	consensus_score=239.9	frequency=1	major_base=A	major_cov=53/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/22
RA	1173	.	NC_000913	17039	0	C	T	consensus_score=296.3	frequency=1	major_base=T	major_cov=58/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/28
RA	1174	.	NC_000913	17085	0	T	C	consensus_score=421.3	frequency=1	major_base=C	major_cov=88/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=88/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=88/36
RA	1175	.	NC_000913	17175	0	C	T	bias_e_value=3508170	bias_p_value=0.755802	consensus_score=475.6	fisher_strand_p_value=0.388489	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=85/53	major_frequency=9.928e-01	minor_base=C	minor_cov=0/1	new_cov=85/53	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=85/54
RA	1176	.	NC_000913	17219	0	G	T	consensus_score=507.0	frequency=1	major_base=T	major_cov=83/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/63
RA	1177	.	NC_000913	17228	0	G	A	consensus_score=464.8	frequency=1	major_base=A	major_cov=77/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/58
RA	1178	.	NC_000913	17229	0	C	T	consensus_score=461.4	frequency=1	major_base=T	major_cov=77/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/58
RA	1179	.	NC_000913	17231	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=460.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=76/58	major_frequency=9.926e-01	minor_base=C	minor_cov=1/0	new_cov=76/58	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/58
RA	1180	.	NC_000913	17245	0	C	G	consensus_score=521.4	frequency=1	major_base=G	major_cov=78/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/70
RA	1181	.	NC_000913	17281	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=508.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=68/81	major_frequency=9.933e-01	minor_base=G	minor_cov=0/1	new_cov=68/81	polymorphism_frequency=9.933e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=69/82
RA	1182	.	NC_000913	17309	0	A	G	consensus_score=576.6	frequency=1	major_base=G	major_cov=73/92	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/92	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/92
RA	1183	.	NC_000913	17348	1	.	A	bias_e_value=3686290	bias_p_value=0.794176	consensus_score=497.7	fisher_strand_p_value=0.431507	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/83	major_frequency=9.932e-01	minor_base=G	minor_cov=1/0	new_cov=62/83	polymorphism_frequency=9.932e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/83
RA	1184	.	NC_000913	17350	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=504.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/84	major_frequency=9.932e-01	minor_base=G	minor_cov=0/1	new_cov=63/84	polymorphism_frequency=9.932e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=63/85
RA	1185	.	NC_000913	17383	0	A	G	consensus_score=465.5	frequency=1	major_base=G	major_cov=50/84	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/84	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/84
RA	1186	.	NC_000913	17385	0	C	A	consensus_score=464.9	frequency=1	major_base=A	major_cov=50/84	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/84	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/84
RA	1187	.	NC_000913	17399	0	A	G	consensus_score=469.7	frequency=1	major_base=G	major_cov=46/86	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/86	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/86
RA	1188	.	NC_000913	17436	0	C	T	consensus_score=443.4	frequency=1	major_base=T	major_cov=54/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/76
RA	1189	.	NC_000913	17578	0	C	T	bias_e_value=1674400	bias_p_value=0.360734	consensus_score=419.1	fisher_strand_p_value=0.113621	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=60/66	major_frequency=9.767e-01	minor_base=C	minor_cov=3/0	new_cov=60/66	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=3/0	total_cov=63/66
RA	1190	.	NC_000913	17809	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=361.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/64	major_frequency=9.907e-01	minor_base=G	minor_cov=0/1	new_cov=43/64	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=43/65
RA	1191	.	NC_000913	17830	0	T	C	consensus_score=352.8	frequency=1	major_base=C	major_cov=44/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/58
RA	1192	.	NC_000913	17893	0	T	C	bias_e_value=2526290	bias_p_value=0.544266	consensus_score=289.7	fisher_strand_p_value=0.214211	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=39/47	major_frequency=9.773e-01	minor_base=A	minor_cov=2/0	new_cov=39/47	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	1193	.	NC_000913	17908	0	A	G	consensus_score=299.7	frequency=1	major_base=G	major_cov=40/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	1194	.	NC_000913	18093	0	C	T	consensus_score=293.7	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	1195	.	NC_000913	18118	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=244.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/36	major_frequency=9.733e-01	minor_base=A	minor_cov=1/1	new_cov=37/36	polymorphism_frequency=9.733e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=38/38
RA	1196	.	NC_000913	18127	0	G	A	bias_e_value=3741280	bias_p_value=0.806024	consensus_score=238.8	fisher_strand_p_value=0.459459	frequency=1	ks_quality_p_value=0.970456	major_base=A	major_cov=33/40	major_frequency=9.865e-01	minor_base=G	minor_cov=1/0	new_cov=33/40	polymorphism_frequency=9.865e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=34/40
RA	1197	.	NC_000913	18169	0	T	C	consensus_score=243.7	frequency=1	major_base=C	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	1198	.	NC_000913	18253	0	G	A	consensus_score=242.4	frequency=1	major_base=A	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	1199	.	NC_000913	18322	0	C	T	consensus_score=231.6	frequency=1	major_base=T	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	1200	.	NC_000913	18477	0	T	C	consensus_score=248.7	frequency=1	major_base=C	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	1201	.	NC_000913	19014	0	C	T	consensus_score=307.5	frequency=1	major_base=T	major_cov=43/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	1202	.	NC_000913	19398	0	T	G	consensus_score=316.8	frequency=1	major_base=G	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	1203	.	NC_000913	19613	0	T	C	consensus_score=231.9	frequency=1	major_base=C	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	1204	.	NC_000913	19627	0	G	C	consensus_score=217.5	frequency=1	major_base=C	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	1205	.	NC_000913	19634	1	.	C	bias_e_value=98488.9	bias_p_value=0.0212185	consensus_score=193.8	fisher_strand_p_value=0.00315279	frequency=1	ks_quality_p_value=0.994899	major_base=C	major_cov=19/36	major_frequency=8.594e-01	minor_base=.	minor_cov=8/1	new_cov=19/36	polymorphism_frequency=8.594e-01	polymorphism_score=26.5	prediction=consensus	ref_cov=8/1	total_cov=27/37
RA	1206	.	NC_000913	19670	0	T	A	consensus_score=142.6	frequency=1	major_base=A	major_cov=25/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/21
RA	1207	.	NC_000913	19715	0	G	A	consensus_score=88.3	frequency=1	major_base=A	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	1208	.	NC_000913	20590	0	T	C	consensus_score=95.6	frequency=1	major_base=C	major_cov=9/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/22
RA	1209	.	NC_000913	20600	0	G	A	consensus_score=110.0	frequency=1	major_base=A	major_cov=12/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/23
RA	1210	.	NC_000913	20605	0	A	.	consensus_score=161.0	frequency=1	major_base=.	major_cov=12/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/23
RA	1211	.	NC_000913	21617	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=340.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=54/44	major_frequency=9.899e-01	minor_base=A	minor_cov=1/0	new_cov=54/44	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/44
RA	1212	.	NC_000913	21619	0	A	G	consensus_score=343.1	frequency=1	major_base=G	major_cov=55/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/44
RA	1213	.	NC_000913	21750	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=246.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/47	major_frequency=9.870e-01	minor_base=G	minor_cov=0/1	new_cov=29/47	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/48
RA	1214	.	NC_000913	21895	0	C	T	consensus_score=258.4	frequency=1	major_base=T	major_cov=34/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/44
RA	1215	.	NC_000913	21910	0	C	T	consensus_score=254.3	frequency=1	major_base=T	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	1216	.	NC_000913	21922	0	C	G	consensus_score=254.1	frequency=1	major_base=G	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	1217	.	NC_000913	21925	0	T	G	consensus_score=254.7	frequency=1	major_base=G	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	1218	.	NC_000913	21952	0	G	A	consensus_score=260.9	frequency=1	major_base=A	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	1219	.	NC_000913	22048	0	G	A	consensus_score=242.3	frequency=1	major_base=A	major_cov=43/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/29
RA	1220	.	NC_000913	22373	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=361.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=53/53	major_frequency=9.907e-01	minor_base=T	minor_cov=0/1	new_cov=53/53	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=53/54
RA	1221	.	NC_000913	22468	0	C	G	consensus_score=364.8	frequency=1	major_base=G	major_cov=48/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/59
RA	1222	.	NC_000913	22942	0	A	G	consensus_score=200.0	frequency=1	major_base=G	major_cov=22/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/38
RA	1223	.	NC_000913	22945	0	T	A	consensus_score=199.0	frequency=1	major_base=A	major_cov=22/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/39
RA	1224	.	NC_000913	23032	0	C	T	consensus_score=209.5	frequency=1	major_base=T	major_cov=18/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/46
RA	1225	.	NC_000913	23038	0	A	G	consensus_score=224.7	frequency=1	major_base=G	major_cov=18/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/46
RA	1226	.	NC_000913	23104	0	A	G	consensus_score=205.7	frequency=1	major_base=G	major_cov=18/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/42
RA	1227	.	NC_000913	23116	0	C	T	consensus_score=177.1	frequency=1	major_base=T	major_cov=16/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/38
RA	1228	.	NC_000913	23137	0	C	G	consensus_score=173.8	frequency=1	major_base=G	major_cov=18/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/32
RA	1229	.	NC_000913	23161	0	A	T	consensus_score=145.9	frequency=1	major_base=T	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	1230	.	NC_000913	23270	0	G	A	consensus_score=138.0	frequency=1	major_base=A	major_cov=22/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/19
RA	1231	.	NC_000913	23297	0	C	T	consensus_score=149.2	frequency=1	major_base=T	major_cov=27/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/18
RA	1232	.	NC_000913	23803	0	T	C	bias_e_value=2682400	bias_p_value=0.577897	consensus_score=252.2	fisher_strand_p_value=0.239726	frequency=1	ks_quality_p_value=0.987728	major_base=C	major_cov=37/34	major_frequency=9.726e-01	minor_base=A	minor_cov=0/2	new_cov=37/34	polymorphism_frequency=9.726e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	1233	.	NC_000913	23860	0	T	C	bias_e_value=1708880	bias_p_value=0.368161	consensus_score=269.4	fisher_strand_p_value=0.11706	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=40/41	major_frequency=9.529e-01	minor_base=A	minor_cov=4/0	new_cov=40/41	polymorphism_frequency=9.529e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	1234	.	NC_000913	23896	0	C	T	consensus_score=300.4	frequency=1	major_base=T	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	1235	.	NC_000913	23897	0	G	A	consensus_score=291.4	frequency=1	major_base=A	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	1236	.	NC_000913	23899	0	T	C	consensus_score=309.7	frequency=1	major_base=C	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	1237	.	NC_000913	23956	0	T	C	bias_e_value=1236650	bias_p_value=0.266425	consensus_score=284.1	fisher_strand_p_value=0.0739047	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/47	major_frequency=9.634e-01	minor_base=A	minor_cov=3/0	new_cov=32/47	polymorphism_frequency=9.634e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	1238	.	NC_000913	23962	0	C	T	consensus_score=267.2	frequency=1	major_base=T	major_cov=32/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/47
RA	1239	.	NC_000913	23977	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=255.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/38	major_frequency=9.868e-01	minor_base=C	minor_cov=1/0	new_cov=37/38	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/39
RA	1240	.	NC_000913	23980	0	A	T	consensus_score=258.2	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	1241	.	NC_000913	23981	0	T	C	consensus_score=266.3	frequency=1	major_base=C	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	1242	.	NC_000913	23983	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=262.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=38/38	major_frequency=9.870e-01	minor_base=A	minor_cov=0/1	new_cov=38/38	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	1243	.	NC_000913	23986	0	T	C	bias_e_value=2703800	bias_p_value=0.582508	consensus_score=247.0	fisher_strand_p_value=0.24	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=35/38	major_frequency=9.605e-01	minor_base=A	minor_cov=3/0	new_cov=35/38	polymorphism_frequency=9.605e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=38/39
RA	1244	.	NC_000913	24085	0	A	G	bias_e_value=3696800	bias_p_value=0.79644	consensus_score=252.4	fisher_strand_p_value=0.434211	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=43/32	major_frequency=9.868e-01	minor_base=C	minor_cov=0/1	new_cov=43/32	polymorphism_frequency=9.868e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=43/33
RA	1245	.	NC_000913	24091	0	C	T	bias_e_value=3922130	bias_p_value=0.844986	consensus_score=237.8	fisher_strand_p_value=0.497717	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/33	major_frequency=9.726e-01	minor_base=C	minor_cov=2/0	new_cov=38/33	polymorphism_frequency=9.726e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=40/33
RA	1246	.	NC_000913	24094	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=233.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/30	major_frequency=9.857e-01	minor_base=C	minor_cov=1/0	new_cov=39/30	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=40/31
RA	1247	.	NC_000913	24133	0	G	A	consensus_score=209.0	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	1248	.	NC_000913	24136	0	T	C	consensus_score=232.2	frequency=1	major_base=C	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	1249	.	NC_000913	24217	0	T	C	consensus_score=222.5	frequency=1	major_base=C	major_cov=36/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/29
RA	1250	.	NC_000913	24340	0	T	C	consensus_score=216.1	frequency=1	major_base=C	major_cov=26/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/38
RA	1251	.	NC_000913	24616	0	T	C	bias_e_value=3615810	bias_p_value=0.778992	consensus_score=241.4	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=0.982954	major_base=C	major_cov=44/31	major_frequency=9.868e-01	minor_base=T	minor_cov=0/1	new_cov=44/31	polymorphism_frequency=9.868e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/1	total_cov=44/32
RA	1252	.	NC_000913	24646	0	A	G	consensus_score=257.2	frequency=1	major_base=G	major_cov=47/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/27
RA	1253	.	NC_000913	24670	0	G	T	consensus_score=244.6	frequency=1	major_base=T	major_cov=43/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/29
RA	1254	.	NC_000913	24781	0	C	T	bias_e_value=3691460	bias_p_value=0.795291	consensus_score=216.3	fisher_strand_p_value=0.432836	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/28	major_frequency=9.851e-01	minor_base=G	minor_cov=0/1	new_cov=38/28	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	1255	.	NC_000913	24799	0	G	A	consensus_score=226.3	frequency=1	major_base=A	major_cov=39/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/31
RA	1256	.	NC_000913	24935	0	T	G	consensus_score=230.9	frequency=1	major_base=G	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	1257	.	NC_000913	24977	0	C	T	consensus_score=230.0	frequency=1	major_base=T	major_cov=25/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/42
RA	1258	.	NC_000913	25598	0	A	G	consensus_score=254.4	frequency=1	major_base=G	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	1259	.	NC_000913	25677	0	G	A	bias_e_value=3294950	bias_p_value=0.709866	consensus_score=226.0	fisher_strand_p_value=0.342857	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=23/46	major_frequency=9.857e-01	minor_base=C	minor_cov=1/0	new_cov=23/46	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/46
RA	1260	.	NC_000913	25685	0	G	A	bias_e_value=3268950	bias_p_value=0.704265	consensus_score=257.5	fisher_strand_p_value=0.337662	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=25/51	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=25/51	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/51
RA	1261	.	NC_000913	26534	0	T	C	consensus_score=221.0	frequency=1	major_base=C	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	1262	.	NC_000913	26606	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=217.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=36/27	major_frequency=9.844e-01	minor_base=T	minor_cov=1/0	new_cov=36/27	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/27
RA	1263	.	NC_000913	26609	0	C	T	bias_e_value=3610980	bias_p_value=0.777952	consensus_score=213.2	fisher_strand_p_value=0.412698	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/25	major_frequency=9.841e-01	minor_base=C	minor_cov=0/1	new_cov=37/25	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=37/27
RA	1264	.	NC_000913	26621	0	A	G	consensus_score=215.8	frequency=1	major_base=G	major_cov=35/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/28
RA	1265	.	NC_000913	26624	0	T	G	consensus_score=214.0	frequency=1	major_base=G	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	1266	.	NC_000913	26636	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=211.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=34/27	major_frequency=9.839e-01	minor_base=A	minor_cov=1/0	new_cov=34/27	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	1267	.	NC_000913	26648	0	C	T	consensus_score=218.6	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1268	.	NC_000913	26663	0	G	T	consensus_score=211.2	frequency=1	major_base=T	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	1269	.	NC_000913	26666	0	A	G	consensus_score=216.2	frequency=1	major_base=G	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	1270	.	NC_000913	27026	0	C	T	consensus_score=349.0	frequency=1	major_base=T	major_cov=56/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/48
RA	1271	.	NC_000913	27104	0	G	A	consensus_score=333.9	frequency=1	major_base=A	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	1272	.	NC_000913	27367	0	A	C	bias_e_value=3308920	bias_p_value=0.712875	consensus_score=270.7	fisher_strand_p_value=0.345679	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=27/53	major_frequency=9.877e-01	minor_base=A	minor_cov=1/0	new_cov=27/53	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=28/53
RA	1273	.	NC_000913	45950	0	G	A	consensus_score=211.0	frequency=1	major_base=A	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	1274	.	NC_000913	45978	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=211.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/35	major_frequency=9.851e-01	minor_base=G	minor_cov=0/1	new_cov=31/35	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	1275	.	NC_000913	46028	0	T	C	consensus_score=231.4	frequency=1	major_base=C	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	1276	.	NC_000913	46247	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=283.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=43/39	major_frequency=9.880e-01	minor_base=T	minor_cov=1/0	new_cov=43/39	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/40
RA	1277	.	NC_000913	46253	0	G	C	bias_e_value=3915900	bias_p_value=0.843644	consensus_score=268.8	fisher_strand_p_value=0.495798	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=43/40	major_frequency=9.765e-01	minor_base=A	minor_cov=2/0	new_cov=43/40	polymorphism_frequency=9.765e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	1278	.	NC_000913	46277	0	T	C	bias_e_value=3936050	bias_p_value=0.847985	consensus_score=289.1	fisher_strand_p_value=0.502043	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=48/39	major_frequency=9.775e-01	minor_base=T	minor_cov=2/0	new_cov=48/39	polymorphism_frequency=9.775e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=51/39
RA	1279	.	NC_000913	46448	0	C	A	consensus_score=346.5	frequency=1	major_base=A	major_cov=59/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/45
RA	1280	.	NC_000913	46634	0	G	T	consensus_score=265.3	frequency=1	major_base=T	major_cov=31/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/50
RA	1281	.	NC_000913	46652	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=262.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=28/52	major_frequency=9.877e-01	minor_base=A	minor_cov=0/1	new_cov=28/52	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=28/53
RA	1282	.	NC_000913	46655	0	A	G	bias_e_value=4071190	bias_p_value=0.8771	consensus_score=257.9	fisher_strand_p_value=0.547152	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=27/51	major_frequency=9.750e-01	minor_base=T	minor_cov=0/2	new_cov=27/51	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=28/53
RA	1283	.	NC_000913	46661	0	T	C	consensus_score=268.2	frequency=1	major_base=C	major_cov=27/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/53
RA	1284	.	NC_000913	46790	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=276.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=36/45	major_frequency=9.878e-01	minor_base=A	minor_cov=0/1	new_cov=36/45	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/46
RA	1285	.	NC_000913	46943	0	T	C	consensus_score=315.1	frequency=1	major_base=C	major_cov=57/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/34
RA	1286	.	NC_000913	46976	0	A	G	consensus_score=341.0	frequency=1	major_base=G	major_cov=63/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/35
RA	1287	.	NC_000913	47099	0	G	A	bias_e_value=3973070	bias_p_value=0.855961	consensus_score=345.9	fisher_strand_p_value=0.513816	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=60/42	major_frequency=9.808e-01	minor_base=C	minor_cov=2/0	new_cov=60/42	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/42
RA	1288	.	NC_000913	47434	0	T	C	consensus_score=334.8	frequency=1	major_base=C	major_cov=44/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	1289	.	NC_000913	48033	0	T	G	consensus_score=242.2	frequency=1	major_base=G	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	1290	.	NC_000913	66635	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=194.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/30	major_frequency=9.839e-01	minor_base=C	minor_cov=1/0	new_cov=31/30	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/30
RA	1291	.	NC_000913	71170	0	T	C	consensus_score=295.6	frequency=1	major_base=C	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	1292	.	NC_000913	76162	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=342.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/55	major_frequency=9.899e-01	minor_base=G	minor_cov=0/1	new_cov=43/55	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	1293	.	NC_000913	81102	0	G	A	consensus_score=280.6	frequency=1	major_base=A	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	1294	.	NC_000913	122765	0	T	A	consensus_score=287.0	frequency=1	major_base=A	major_cov=46/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/40
RA	1295	.	NC_000913	154182	0	C	T	consensus_score=489.9	frequency=1	major_base=T	major_cov=75/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/70
RA	1296	.	NC_000913	156068	0	A	G	consensus_score=329.7	frequency=1	major_base=G	major_cov=57/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/37
RA	1297	.	NC_000913	193327	0	C	T	consensus_score=320.5	frequency=1	major_base=T	major_cov=38/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/59
RA	1298	.	NC_000913	284535	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=102.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=15/16	major_frequency=9.688e-01	minor_base=A	minor_cov=0/1	new_cov=15/16	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	1299	.	NC_000913	292019	0	C	T	bias_e_value=3356960	bias_p_value=0.723226	consensus_score=290.1	fisher_strand_p_value=0.355556	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=58/31	major_frequency=9.889e-01	minor_base=G	minor_cov=0/1	new_cov=58/31	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/33
RA	1300	.	NC_000913	297187	0	G	C	bias_e_value=3689000	bias_p_value=0.794761	consensus_score=406.9	fisher_strand_p_value=0.432203	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/67	major_frequency=9.915e-01	minor_base=T	minor_cov=1/0	new_cov=50/67	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/67
RA	1301	.	NC_000913	309381	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=259.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/40	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=38/40	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	1302	.	NC_000913	309985	0	T	A	consensus_score=274.3	frequency=1	major_base=A	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	1303	.	NC_000913	321260	0	A	T	consensus_score=437.7	frequency=1	major_base=T	major_cov=62/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/69
RA	1304	.	NC_000913	341180	0	C	T	consensus_score=200.8	frequency=1	major_base=T	major_cov=19/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/40
RA	1305	.	NC_000913	410666	0	C	T	consensus_score=252.2	frequency=1	major_base=T	major_cov=45/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/32
RA	1306	.	NC_000913	421027	0	C	T	bias_e_value=3653020	bias_p_value=0.787008	consensus_score=250.0	fisher_strand_p_value=0.423077	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/45	major_frequency=9.872e-01	minor_base=C	minor_cov=1/0	new_cov=32/45	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=33/45
RA	1307	.	NC_000913	430299	0	C	A	bias_e_value=9.03163	bias_p_value=1.94578e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.7	fisher_strand_p_value=1.14579e-07	frequency=2.921e-01	ks_quality_p_value=1	major_base=C	major_cov=28/35	major_frequency=7.079e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.921e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=28/35	total_cov=55/36
RA	1308	.	NC_000913	472849	0	A	G	consensus_score=303.4	frequency=1	major_base=G	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	1309	.	NC_000913	495622	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=351.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=60/42	major_frequency=9.903e-01	minor_base=C	minor_cov=1/0	new_cov=60/42	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=61/42
RA	1310	.	NC_000913	500988	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=286.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/50	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=35/50	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/51
RA	1311	.	NC_000913	514434	0	C	T	bias_e_value=3857330	bias_p_value=0.831026	consensus_score=143.6	fisher_strand_p_value=0.478261	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/21	major_frequency=9.783e-01	minor_base=C	minor_cov=0/1	new_cov=24/21	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=24/22
RA	1312	.	NC_000913	516902	0	T	A	consensus_score=299.6	frequency=1	major_base=A	major_cov=36/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/53
RA	1313	.	NC_000913	534742	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=238.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/25	major_frequency=9.859e-01	minor_base=G	minor_cov=1/0	new_cov=45/25	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=47/25
RA	1314	.	NC_000913	582597	0	C	T	bias_e_value=1698810	bias_p_value=0.365992	consensus_score=395.9	fisher_strand_p_value=0.11605	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/58	major_frequency=9.758e-01	minor_base=C	minor_cov=0/3	new_cov=63/58	polymorphism_frequency=9.758e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=63/62
RA	1315	.	NC_000913	602835	0	G	A	consensus_score=329.5	frequency=1	major_base=A	major_cov=39/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/58
RA	1316	.	NC_000913	674259	0	G	A	consensus_score=224.5	frequency=1	major_base=A	major_cov=34/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/32
RA	1317	.	NC_000913	677829	0	T	C	bias_e_value=3846320	bias_p_value=0.828653	consensus_score=329.4	fisher_strand_p_value=0.496134	frequency=1	ks_quality_p_value=0.957521	major_base=C	major_cov=49/46	major_frequency=9.794e-01	minor_base=A	minor_cov=2/0	new_cov=49/46	polymorphism_frequency=9.794e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=51/47
RA	1318	.	NC_000913	694941	0	G	A	consensus_score=231.5	frequency=1	major_base=A	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	1319	.	NC_000913	696470	0	C	T	bias_e_value=4226840	bias_p_value=0.910633	consensus_score=213.6	fisher_strand_p_value=0.608209	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/34	major_frequency=9.559e-01	minor_base=C	minor_cov=2/1	new_cov=31/34	polymorphism_frequency=9.559e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=2/1	total_cov=33/37
RA	1320	.	NC_000913	708774	0	G	A	bias_e_value=3893170	bias_p_value=0.838748	consensus_score=305.5	fisher_strand_p_value=0.488889	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/46	major_frequency=9.889e-01	minor_base=C	minor_cov=1/0	new_cov=43/46	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	1321	.	NC_000913	721604	0	G	A	consensus_score=218.6	frequency=1	major_base=A	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	1322	.	NC_000913	780624	0	C	T	bias_e_value=2479270	bias_p_value=0.534135	consensus_score=230.5	fisher_strand_p_value=0.207701	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/32	major_frequency=9.730e-01	minor_base=G	minor_cov=0/2	new_cov=40/32	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=41/34
RA	1323	.	NC_000913	789580	0	C	A	consensus_score=227.1	frequency=1	major_base=A	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	1324	.	NC_000913	822527	0	C	T	consensus_score=291.6	frequency=1	major_base=T	major_cov=52/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/36
RA	1325	.	NC_000913	847955	0	G	A	bias_e_value=0.0164119	bias_p_value=3.5358e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.7	fisher_strand_p_value=1.49679e-10	frequency=2.895e-01	ks_quality_p_value=1	major_base=G	major_cov=48/33	major_frequency=7.105e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.895e-01	polymorphism_score=39.5	prediction=polymorphism	ref_cov=48/33	total_cov=49/66
RA	1326	.	NC_000913	883396	0	C	T	consensus_score=329.1	frequency=1	major_base=T	major_cov=40/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/59
RA	1327	.	NC_000913	908169	0	C	T	consensus_score=174.2	frequency=1	major_base=T	major_cov=27/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/25
RA	1328	.	NC_000913	968252	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=291.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/39	major_frequency=9.890e-01	minor_base=C	minor_cov=1/0	new_cov=51/39	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/39
RA	1329	.	NC_000913	1001094	0	G	T	bias_e_value=1.13758	bias_p_value=2.4508e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.3	fisher_strand_p_value=1.2781e-08	frequency=3.091e-01	ks_quality_p_value=1	major_base=G	major_cov=43/33	major_frequency=6.909e-01	minor_base=T	minor_cov=1/33	new_cov=1/33	polymorphism_frequency=3.091e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=43/33	total_cov=44/66
RA	1330	.	NC_000913	1054855	0	G	A	consensus_score=169.7	frequency=1	major_base=A	major_cov=34/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/20
RA	1331	.	NC_000913	1066699	0	C	T	consensus_score=292.3	frequency=1	major_base=T	major_cov=59/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/26
RA	1332	.	NC_000913	1075234	0	C	T	consensus_score=146.6	frequency=1	major_base=T	major_cov=23/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/23
RA	1333	.	NC_000913	1075528	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=178.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/28	major_frequency=9.818e-01	minor_base=G	minor_cov=0/1	new_cov=26/28	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/29
RA	1334	.	NC_000913	1078268	0	A	T	bias_e_value=2366090	bias_p_value=0.509751	consensus_score=229.6	fisher_strand_p_value=0.192547	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/29	major_frequency=9.714e-01	minor_base=G	minor_cov=0/2	new_cov=39/29	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	1335	.	NC_000913	1086153	0	C	T	consensus_score=159.9	frequency=1	major_base=T	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	1336	.	NC_000913	1090508	0	C	T	consensus_score=231.5	frequency=1	major_base=T	major_cov=44/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/25
RA	1337	.	NC_000913	1107209	0	C	T	consensus_score=292.9	frequency=1	major_base=T	major_cov=40/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/46
RA	1338	.	NC_000913	1109740	0	C	T	consensus_score=315.1	frequency=1	major_base=T	major_cov=39/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/52
RA	1339	.	NC_000913	1110033	0	G	A	consensus_score=193.2	frequency=1	major_base=A	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	1340	.	NC_000913	1112209	0	C	T	bias_e_value=3973790	bias_p_value=0.856115	consensus_score=213.7	fisher_strand_p_value=0.514047	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/39	major_frequency=9.706e-01	minor_base=C	minor_cov=0/2	new_cov=27/39	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=27/41
RA	1341	.	NC_000913	1112421	0	C	T	consensus_score=214.4	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	1342	.	NC_000913	1114389	0	C	T	bias_e_value=3700990	bias_p_value=0.797343	consensus_score=281.0	fisher_strand_p_value=0.435294	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/48	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=36/48	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/48
RA	1343	.	NC_000913	1115185	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=195.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/41	major_frequency=9.844e-01	minor_base=G	minor_cov=0/1	new_cov=22/41	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	1344	.	NC_000913	1117707	0	G	A	bias_e_value=4641340	bias_p_value=0.999933	consensus_score=209.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988413	major_base=A	major_cov=33/32	major_frequency=9.848e-01	minor_base=G	minor_cov=0/1	new_cov=33/32	polymorphism_frequency=9.848e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=33/33
RA	1345	.	NC_000913	1120111	0	G	A	consensus_score=272.7	frequency=1	major_base=A	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	1346	.	NC_000913	1121547	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=184.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/24	major_frequency=9.833e-01	minor_base=C	minor_cov=1/0	new_cov=35/24	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/24
RA	1347	.	NC_000913	1121762	0	G	A	consensus_score=239.7	frequency=1	major_base=A	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	1348	.	NC_000913	1123823	0	G	A	bias_e_value=3921780	bias_p_value=0.84491	consensus_score=240.6	fisher_strand_p_value=0.497608	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/35	major_frequency=9.740e-01	minor_base=C	minor_cov=2/0	new_cov=40/35	polymorphism_frequency=9.740e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/35
RA	1349	.	NC_000913	1123824	0	T	G	consensus_score=266.3	frequency=1	major_base=G	major_cov=42/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/35
RA	1350	.	NC_000913	1126316	0	G	A	consensus_score=276.7	frequency=1	major_base=A	major_cov=42/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/40
RA	1351	.	NC_000913	1126518	0	C	T	consensus_score=214.4	frequency=1	major_base=T	major_cov=35/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/28
RA	1352	.	NC_000913	1127334	0	G	A	consensus_score=149.4	frequency=1	major_base=A	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	1353	.	NC_000913	1127338	0	G	A	bias_e_value=3860430	bias_p_value=0.831693	consensus_score=154.7	fisher_strand_p_value=0.479167	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/25	major_frequency=9.792e-01	minor_base=C	minor_cov=1/0	new_cov=22/25	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	1354	.	NC_000913	1129796	0	G	A	consensus_score=315.4	frequency=1	major_base=A	major_cov=47/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/44
RA	1355	.	NC_000913	1130210	0	G	A	consensus_score=286.0	frequency=1	major_base=A	major_cov=36/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/47
RA	1356	.	NC_000913	1130803	0	C	T	consensus_score=231.5	frequency=1	major_base=T	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	1357	.	NC_000913	1133273	0	G	A	consensus_score=246.4	frequency=1	major_base=A	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	1358	.	NC_000913	1134466	0	C	T	consensus_score=256.8	frequency=1	major_base=T	major_cov=37/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/39
RA	1359	.	NC_000913	1138152	0	C	T	consensus_score=263.8	frequency=1	major_base=T	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	1360	.	NC_000913	1138533	0	C	T	bias_e_value=2147240	bias_p_value=0.462602	consensus_score=260.9	fisher_strand_p_value=0.165168	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/30	major_frequency=9.744e-01	minor_base=G	minor_cov=0/2	new_cov=46/30	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/32
RA	1361	.	NC_000913	1138831	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=217.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/43	major_frequency=9.851e-01	minor_base=G	minor_cov=0/1	new_cov=23/43	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/44
RA	1362	.	NC_000913	1141865	0	G	A	bias_e_value=3905230	bias_p_value=0.841345	consensus_score=217.3	fisher_strand_p_value=0.492537	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/34	major_frequency=9.706e-01	minor_base=C	minor_cov=2/0	new_cov=32/34	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	1363	.	NC_000913	1144974	0	C	T	bias_e_value=3654820	bias_p_value=0.787397	consensus_score=275.9	fisher_strand_p_value=0.423529	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/49	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=35/49	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=36/49
RA	1364	.	NC_000913	1146110	0	C	T	consensus_score=193.2	frequency=1	major_base=T	major_cov=17/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/42
RA	1365	.	NC_000913	1146384	0	A	G	consensus_score=214.9	frequency=1	major_base=G	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	1366	.	NC_000913	1147792	0	T	A	consensus_score=196.5	frequency=1	major_base=A	major_cov=16/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/43
RA	1367	.	NC_000913	1161403	0	G	A	consensus_score=268.3	frequency=1	major_base=A	major_cov=52/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/28
RA	1368	.	NC_000913	1169836	0	A	G	consensus_score=197.8	frequency=1	major_base=G	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	1369	.	NC_000913	1171417	0	G	A	consensus_score=180.4	frequency=1	major_base=A	major_cov=21/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/33
RA	1370	.	NC_000913	1176602	0	C	T	bias_e_value=3272980	bias_p_value=0.705132	consensus_score=219.9	fisher_strand_p_value=0.338462	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/21	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=43/21	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/22
RA	1371	.	NC_000913	1180126	0	G	A	consensus_score=188.9	frequency=1	major_base=A	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	1372	.	NC_000913	1181995	0	G	A	consensus_score=246.0	frequency=1	major_base=A	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	1373	.	NC_000913	1189980	0	A	G	bias_e_value=3672350	bias_p_value=0.791173	consensus_score=234.7	fisher_strand_p_value=0.452055	frequency=1	ks_quality_p_value=0.94668	major_base=G	major_cov=40/32	major_frequency=9.863e-01	minor_base=A	minor_cov=0/1	new_cov=40/32	polymorphism_frequency=9.863e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=40/33
RA	1374	.	NC_000913	1193141	0	G	A	consensus_score=285.2	frequency=1	major_base=A	major_cov=61/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/26
RA	1375	.	NC_000913	1194922	0	G	A	consensus_score=347.8	frequency=1	major_base=A	major_cov=50/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/53
RA	1376	.	NC_000913	1201548	0	A	C	bias_e_value=3038750	bias_p_value=0.654671	consensus_score=381.9	fisher_strand_p_value=0.294624	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=67/40	major_frequency=9.640e-01	minor_base=.	minor_cov=4/0	new_cov=67/40	polymorphism_frequency=9.640e-01	polymorphism_score=5.3	prediction=consensus	ref_cov=0/0	total_cov=71/40
RA	1377	.	NC_000913	1201550	0	C	A	bias_e_value=2081010	bias_p_value=0.448333	consensus_score=353.3	fisher_strand_p_value=0.157349	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=66/40	major_frequency=9.550e-01	minor_base=C	minor_cov=5/0	new_cov=66/40	polymorphism_frequency=9.550e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=5/0	total_cov=71/40
RA	1378	.	NC_000913	1211857	0	A	G	consensus_score=356.9	frequency=1	major_base=G	major_cov=41/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/59
RA	1379	.	NC_000913	1227656	0	G	A	consensus_score=361.7	frequency=1	major_base=A	major_cov=62/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/48
RA	1380	.	NC_000913	1234947	0	A	G	bias_e_value=325331	bias_p_value=0.0700896	consensus_score=269.8	fisher_strand_p_value=0.013146	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=45/43	major_frequency=9.263e-01	minor_base=T	minor_cov=0/7	new_cov=45/43	polymorphism_frequency=9.263e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	1381	.	NC_000913	1244908	0	C	T	consensus_score=198.2	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	1382	.	NC_000913	1252059	0	C	T	consensus_score=206.6	frequency=1	major_base=T	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	1383	.	NC_000913	1252663	0	C	T	consensus_score=273.1	frequency=1	major_base=T	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	1384	.	NC_000913	1253002	0	C	T	consensus_score=217.8	frequency=1	major_base=T	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	1385	.	NC_000913	1282857	0	C	T	consensus_score=215.7	frequency=1	major_base=T	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	1386	.	NC_000913	1306736	0	T	G	consensus_score=269.9	frequency=1	major_base=G	major_cov=48/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	1387	.	NC_000913	1308684	0	T	C	consensus_score=269.6	frequency=1	major_base=C	major_cov=28/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/50
RA	1388	.	NC_000913	1323798	0	G	A	consensus_score=228.1	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	1389	.	NC_000913	1325054	0	G	A	consensus_score=204.6	frequency=1	major_base=A	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	1390	.	NC_000913	1331059	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=244.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/30	major_frequency=9.867e-01	minor_base=C	minor_cov=1/0	new_cov=44/30	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/30
RA	1391	.	NC_000913	1331060	0	C	T	consensus_score=252.3	frequency=1	major_base=T	major_cov=45/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/30
RA	1392	.	NC_000913	1337394	0	A	G	bias_e_value=3457860	bias_p_value=0.744964	consensus_score=217.9	fisher_strand_p_value=0.378788	frequency=1	ks_quality_p_value=0.995813	major_base=G	major_cov=41/24	major_frequency=9.848e-01	minor_base=T	minor_cov=0/1	new_cov=41/24	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/25
RA	1393	.	NC_000913	1341542	0	G	A	consensus_score=207.9	frequency=1	major_base=A	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	1394	.	NC_000913	1358859	0	T	C	consensus_score=211.0	frequency=1	major_base=C	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	1395	.	NC_000913	1375737	0	G	A	consensus_score=188.5	frequency=1	major_base=A	major_cov=36/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/24
RA	1396	.	NC_000913	1405758	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=359.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/42	major_frequency=9.905e-01	minor_base=C	minor_cov=1/0	new_cov=62/42	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/42
RA	1397	.	NC_000913	1466201	0	T	C	bias_e_value=3471890	bias_p_value=0.747985	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.7	fisher_strand_p_value=0.380314	frequency=2.388e-01	ks_quality_p_value=1	major_base=T	major_cov=18/33	major_frequency=7.612e-01	minor_base=C	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=2.388e-01	polymorphism_score=34.2	prediction=polymorphism	ref_cov=18/33	total_cov=26/41
RA	1398	.	NC_000913	1466210	0	G	A	bias_e_value=1938880	bias_p_value=0.417713	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.7	fisher_strand_p_value=0.141253	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=16/32	major_frequency=7.500e-01	minor_base=A	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=2.500e-01	polymorphism_score=32.0	prediction=polymorphism	ref_cov=16/32	total_cov=25/39
RA	1399	.	NC_000913	1490095	0	G	A	consensus_score=260.8	frequency=1	major_base=A	major_cov=29/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/48
RA	1400	.	NC_000913	1497385	0	T	C	consensus_score=232.6	frequency=1	major_base=C	major_cov=26/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/41
RA	1401	.	NC_000913	1497386	0	T	.	bias_e_value=3487000	bias_p_value=0.751241	consensus_score=313.6	fisher_strand_p_value=0.38806	frequency=1	ks_quality_p_value=0.988757	major_base=.	major_cov=25/41	major_frequency=9.851e-01	minor_base=A	minor_cov=1/0	new_cov=25/41	polymorphism_frequency=9.851e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=0/0	total_cov=26/41
RA	1402	.	NC_000913	1497387	0	C	A	bias_e_value=3503200	bias_p_value=0.754731	consensus_score=221.1	fisher_strand_p_value=0.38806	frequency=1	ks_quality_p_value=0.998192	major_base=A	major_cov=25/41	major_frequency=9.851e-01	minor_base=C	minor_cov=1/0	new_cov=25/41	polymorphism_frequency=9.851e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=1/0	total_cov=26/41
RA	1403	.	NC_000913	1497388	0	T	A	bias_e_value=3503200	bias_p_value=0.754731	consensus_score=221.9	fisher_strand_p_value=0.38806	frequency=1	ks_quality_p_value=0.998192	major_base=A	major_cov=25/41	major_frequency=9.851e-01	minor_base=.	minor_cov=1/0	new_cov=25/41	polymorphism_frequency=9.851e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=26/41
RA	1404	.	NC_000913	1502770	0	T	C	bias_e_value=15.1042	bias_p_value=3.25405e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.9	fisher_strand_p_value=1.97995e-07	frequency=2.105e-01	ks_quality_p_value=1	major_base=T	major_cov=46/29	major_frequency=7.895e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.105e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=46/29	total_cov=46/49
RA	1405	.	NC_000913	1502772	0	G	A	bias_e_value=15.1042	bias_p_value=3.25405e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.0	fisher_strand_p_value=1.97995e-07	frequency=2.105e-01	ks_quality_p_value=1	major_base=G	major_cov=46/29	major_frequency=7.895e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.105e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=46/29	total_cov=46/50
RA	1406	.	NC_000913	1629247	0	C	T	consensus_score=209.1	frequency=1	major_base=T	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	1407	.	NC_000913	1632513	0	C	T	consensus_score=352.7	frequency=1	major_base=T	major_cov=41/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/67
RA	1408	.	NC_000913	1643679	0	A	T	consensus_score=187.9	frequency=1	major_base=T	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	1409	.	NC_000913	1652331	0	T	C	bias_e_value=3865890	bias_p_value=0.832869	consensus_score=358.0	fisher_strand_p_value=0.480769	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=49/54	major_frequency=9.904e-01	minor_base=T	minor_cov=1/0	new_cov=49/54	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/54
RA	1410	.	NC_000913	1660102	0	C	T	consensus_score=217.5	frequency=1	major_base=T	major_cov=21/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/43
RA	1411	.	NC_000913	1667460	0	G	A	consensus_score=337.3	frequency=1	major_base=A	major_cov=45/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/54
RA	1412	.	NC_000913	1894839	0	T	C	bias_e_value=2700060	bias_p_value=0.581703	consensus_score=236.3	fisher_strand_p_value=0.239437	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=36/33	major_frequency=9.718e-01	minor_base=T	minor_cov=0/2	new_cov=36/33	polymorphism_frequency=9.718e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=36/35
RA	1413	.	NC_000913	2040433	0	C	A	consensus_score=246.8	frequency=1	major_base=A	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	1414	.	NC_000913	2111259	0	G	.	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=403.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997597	major_base=.	major_cov=34/52	major_frequency=9.885e-01	minor_base=G	minor_cov=0/1	new_cov=34/52	polymorphism_frequency=9.885e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/1	total_cov=34/53
RA	1415	.	NC_000913	2163929	0	G	A	consensus_score=216.5	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	1416	.	NC_000913	2173363	0	C	.	consensus_score=441.8	frequency=1	major_base=.	major_cov=44/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/50
RA	1417	.	NC_000913	2173364	0	C	.	consensus_score=441.8	frequency=1	major_base=.	major_cov=44/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/50
RA	1418	.	NC_000913	2173448	0	C	T	consensus_score=266.5	frequency=1	major_base=T	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	1419	.	NC_000913	2204395	0	T	A	consensus_score=320.6	frequency=1	major_base=A	major_cov=52/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/44
RA	1420	.	NC_000913	2246779	0	C	A	bias_e_value=61.1868	bias_p_value=1.31821e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.8	fisher_strand_p_value=8.82294e-07	frequency=3.627e-01	ks_quality_p_value=1	major_base=C	major_cov=39/26	major_frequency=6.373e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.627e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=39/26	total_cov=76/26
RA	1421	.	NC_000913	2348366	0	C	A	consensus_score=184.9	frequency=1	major_base=A	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	1422	.	NC_000913	2388753	0	G	A	consensus_score=429.1	frequency=1	major_base=A	major_cov=60/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/65
RA	1423	.	NC_000913	2477265	0	A	C	bias_e_value=0.0177829	bias_p_value=3.83116e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.9	fisher_strand_p_value=1.6276e-10	frequency=2.308e-01	ks_quality_p_value=1	major_base=A	major_cov=11/49	major_frequency=7.692e-01	minor_base=C	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.308e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=11/49	total_cov=29/49
RA	1424	.	NC_000913	2512423	0	C	T	consensus_score=272.3	frequency=1	major_base=T	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	1425	.	NC_000913	2535264	0	G	A	bias_e_value=429.631	bias_p_value=9.25599e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.7	fisher_strand_p_value=7.20858e-06	frequency=2.639e-01	ks_quality_p_value=1	major_base=G	major_cov=29/24	major_frequency=7.361e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.639e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=29/24	total_cov=29/43
RA	1426	.	NC_000913	2577937	0	T	C	consensus_score=296.0	frequency=1	major_base=C	major_cov=51/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/34
RA	1427	.	NC_000913	2582272	0	C	T	consensus_score=239.1	frequency=1	major_base=T	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	1428	.	NC_000913	2587112	0	C	T	consensus_score=275.7	frequency=1	major_base=T	major_cov=47/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/37
RA	1429	.	NC_000913	2600978	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=338.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/55	major_frequency=9.902e-01	minor_base=G	minor_cov=0/1	new_cov=46/55	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/56
RA	1430	.	NC_000913	2613763	0	G	A	consensus_score=204.7	frequency=1	major_base=A	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	1431	.	NC_000913	2623838	0	G	A	consensus_score=271.4	frequency=1	major_base=A	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	1432	.	NC_000913	2632711	0	G	A	consensus_score=250.9	frequency=1	major_base=A	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	1433	.	NC_000913	2722946	0	G	A	bias_e_value=3765290	bias_p_value=0.811197	consensus_score=309.2	fisher_strand_p_value=0.457447	frequency=1	ks_quality_p_value=0.988852	major_base=A	major_cov=42/51	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=42/51	polymorphism_frequency=9.894e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	1434	.	NC_000913	2767444	0	C	A	bias_e_value=0.103825	bias_p_value=2.23681e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.5	fisher_strand_p_value=1.03114e-09	frequency=2.941e-01	ks_quality_p_value=1	major_base=C	major_cov=11/37	major_frequency=7.059e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.941e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=11/37	total_cov=32/37
RA	1435	.	NC_000913	2774947	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=408.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=59/61	major_frequency=9.836e-01	minor_base=G	minor_cov=1/1	new_cov=59/61	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=61/62
RA	1436	.	NC_000913	2778119	0	C	T	bias_e_value=2574720	bias_p_value=0.554699	consensus_score=244.0	fisher_strand_p_value=0.221053	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/40	major_frequency=9.737e-01	minor_base=C	minor_cov=2/0	new_cov=34/40	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=36/41
RA	1437	.	NC_000913	2806897	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=170.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=23/28	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=23/28	polymorphism_frequency=9.808e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=23/29
RA	1438	.	NC_000913	2814595	0	C	T	bias_e_value=3739670	bias_p_value=0.805676	consensus_score=371.8	fisher_strand_p_value=0.445455	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=61/48	major_frequency=9.909e-01	minor_base=C	minor_cov=0/1	new_cov=61/48	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=61/49
RA	1439	.	NC_000913	2818331	0	G	A	bias_e_value=3892730	bias_p_value=0.838651	consensus_score=109.5	fisher_strand_p_value=0.703976	frequency=1	ks_quality_p_value=0.694277	major_base=A	major_cov=22/23	major_frequency=8.491e-01	minor_base=T	minor_cov=5/3	new_cov=22/23	polymorphism_frequency=8.491e-01	polymorphism_score=19.6	prediction=consensus	ref_cov=0/5	total_cov=27/31
RA	1440	.	NC_000913	2823616	0	G	A	bias_e_value=3749640	bias_p_value=0.807824	consensus_score=253.6	fisher_strand_p_value=0.448718	frequency=1	ks_quality_p_value=0.998669	major_base=A	major_cov=34/43	major_frequency=9.872e-01	minor_base=.	minor_cov=1/0	new_cov=34/43	polymorphism_frequency=9.872e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	1441	.	NC_000913	2849941	0	G	A	bias_e_value=2695880	bias_p_value=0.580801	consensus_score=218.3	fisher_strand_p_value=0.238806	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/34	major_frequency=9.701e-01	minor_base=G	minor_cov=2/0	new_cov=31/34	polymorphism_frequency=9.701e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=33/34
RA	1442	.	NC_000913	2851821	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=231.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/51	major_frequency=9.857e-01	minor_base=C	minor_cov=0/1	new_cov=18/51	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/52
RA	1443	.	NC_000913	2867455	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=332.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=67/32	major_frequency=9.802e-01	minor_base=C	minor_cov=2/0	new_cov=67/32	polymorphism_frequency=9.802e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/32
RA	1444	.	NC_000913	2880635	0	T	C	bias_e_value=4618910	bias_p_value=0.995101	consensus_score=335.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.902659	major_base=C	major_cov=56/43	major_frequency=9.802e-01	minor_base=.	minor_cov=1/1	new_cov=56/43	polymorphism_frequency=9.802e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=0/0	total_cov=57/44
RA	1445	.	NC_000913	2881212	0	C	T	consensus_score=290.2	frequency=1	major_base=T	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	1446	.	NC_000913	2883115	0	G	A	bias_e_value=3940960	bias_p_value=0.849043	consensus_score=391.7	fisher_strand_p_value=0.503581	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=66/53	major_frequency=9.835e-01	minor_base=G	minor_cov=2/0	new_cov=66/53	polymorphism_frequency=9.835e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=68/53
RA	1447	.	NC_000913	2886731	0	T	C	consensus_score=339.3	frequency=1	major_base=C	major_cov=51/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/50
RA	1448	.	NC_000913	2890626	0	G	A	consensus_score=237.6	frequency=1	major_base=A	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	1449	.	NC_000913	2893219	0	C	T	consensus_score=373.6	frequency=1	major_base=T	major_cov=56/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/54
RA	1450	.	NC_000913	2893647	0	C	T	consensus_score=206.1	frequency=1	major_base=T	major_cov=27/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/33
RA	1451	.	NC_000913	2894839	0	C	T	consensus_score=250.1	frequency=1	major_base=T	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	1452	.	NC_000913	2916216	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=324.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=50/51	major_frequency=9.902e-01	minor_base=C	minor_cov=1/0	new_cov=50/51	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	1453	.	NC_000913	2926772	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=251.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/34	major_frequency=9.870e-01	minor_base=G	minor_cov=1/0	new_cov=42/34	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	1454	.	NC_000913	2934092	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=476.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=71/72	major_frequency=9.931e-01	minor_base=C	minor_cov=1/0	new_cov=71/72	polymorphism_frequency=9.931e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/72
RA	1455	.	NC_000913	2990480	0	C	A	bias_e_value=0.144009	bias_p_value=3.10254e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.8	fisher_strand_p_value=1.45321e-09	frequency=3.306e-01	ks_quality_p_value=1	major_base=C	major_cov=42/41	major_frequency=6.694e-01	minor_base=A	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=3.306e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=42/41	total_cov=83/41
RA	1456	.	NC_000913	3025601	0	T	.	bias_e_value=3885500	bias_p_value=0.837095	consensus_score=547.8	fisher_strand_p_value=0.495652	frequency=1	ks_quality_p_value=0.98171	major_base=.	major_cov=56/58	major_frequency=9.913e-01	minor_base=T	minor_cov=1/0	new_cov=56/58	polymorphism_frequency=9.913e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/0	total_cov=57/58
RA	1457	.	NC_000913	3032307	0	C	T	bias_e_value=0.0412522	bias_p_value=8.88739e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.3	fisher_strand_p_value=3.9222e-10	frequency=2.475e-01	ks_quality_p_value=1	major_base=C	major_cov=25/51	major_frequency=7.525e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.475e-01	polymorphism_score=23.3	prediction=polymorphism	ref_cov=25/51	total_cov=50/51
RA	1458	.	NC_000913	3054886	0	G	T	bias_e_value=0.478592	bias_p_value=1.03108e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.6	fisher_strand_p_value=5.13293e-09	frequency=2.877e-01	ks_quality_p_value=1	major_base=G	major_cov=15/37	major_frequency=7.123e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.877e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=15/37	total_cov=36/37
RA	1459	.	NC_000913	3054894	0	G	T	bias_e_value=1.09733	bias_p_value=2.3641e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.0	fisher_strand_p_value=1.23045e-08	frequency=3.182e-01	ks_quality_p_value=1	major_base=G	major_cov=10/35	major_frequency=6.818e-01	minor_base=T	minor_cov=20/1	new_cov=20/1	polymorphism_frequency=3.182e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=10/35	total_cov=30/36
RA	1460	.	NC_000913	3070858	0	T	G	consensus_score=250.8	frequency=1	major_base=G	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	1461	.	NC_000913	3096754	0	G	A	bias_e_value=3469340	bias_p_value=0.747437	consensus_score=263.1	fisher_strand_p_value=0.379747	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/49	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=29/49	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/50
RA	1462	.	NC_000913	3197137	0	G	T	bias_e_value=21.9799	bias_p_value=4.73536e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.5	fisher_strand_p_value=2.95309e-07	frequency=2.266e-01	ks_quality_p_value=1	major_base=G	major_cov=47/52	major_frequency=7.734e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.266e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=47/52	total_cov=47/81
RA	1463	.	NC_000913	3207549	0	G	.	bias_e_value=3534460	bias_p_value=0.761465	consensus_score=474.4	fisher_strand_p_value=0.405941	frequency=1	ks_quality_p_value=0.971888	major_base=.	major_cov=40/60	major_frequency=9.901e-01	minor_base=G	minor_cov=1/0	new_cov=40/60	polymorphism_frequency=9.901e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=1/0	total_cov=41/60
RA	1464	.	NC_000913	3256301	0	G	A	consensus_score=294.3	frequency=1	major_base=A	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	1465	.	NC_000913	3279276	0	C	G	bias_e_value=4641650	bias_p_value=1	consensus_score=310.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/41	major_frequency=9.888e-01	minor_base=A	minor_cov=1/0	new_cov=47/41	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	1466	.	NC_000913	3296481	0	G	A	consensus_score=253.9	frequency=1	major_base=A	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	1467	.	NC_000913	3329743	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=196.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/33	major_frequency=9.833e-01	minor_base=G	minor_cov=0/1	new_cov=26/33	polymorphism_frequency=9.833e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/1	total_cov=26/34
RA	1468	.	NC_000913	3364664	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=430.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=77/52	major_frequency=9.923e-01	minor_base=G	minor_cov=1/0	new_cov=77/52	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=78/52
RA	1469	.	NC_000913	3388041	0	T	G	consensus_score=241.6	frequency=1	major_base=G	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	1470	.	NC_000913	3411689	0	G	T	consensus_score=373.2	frequency=1	major_base=T	major_cov=63/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/47
RA	1471	.	NC_000913	3433665	0	C	T	consensus_score=405.2	frequency=1	major_base=T	major_cov=68/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/49
RA	1472	.	NC_000913	3433900	0	C	T	consensus_score=429.1	frequency=1	major_base=T	major_cov=49/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/80
RA	1473	.	NC_000913	3474425	0	T	G	bias_e_value=3842930	bias_p_value=0.827923	consensus_score=226.4	fisher_strand_p_value=0.478873	frequency=1	ks_quality_p_value=0.98999	major_base=G	major_cov=37/33	major_frequency=9.859e-01	minor_base=T	minor_cov=0/1	new_cov=37/33	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=37/34
RA	1474	.	NC_000913	3481131	0	G	A	consensus_score=331.8	frequency=1	major_base=A	major_cov=59/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/45
RA	1475	.	NC_000913	3486502	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=313.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/54	major_frequency=9.794e-01	minor_base=C	minor_cov=1/1	new_cov=41/54	polymorphism_frequency=9.794e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=42/55
RA	1476	.	NC_000913	3500129	0	G	A	consensus_score=292.9	frequency=1	major_base=A	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	1477	.	NC_000913	3511466	0	C	T	consensus_score=284.9	frequency=1	major_base=T	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	1478	.	NC_000913	3517171	0	G	A	bias_e_value=3847530	bias_p_value=0.828914	consensus_score=419.7	fisher_strand_p_value=0.47541	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=57/64	major_frequency=9.918e-01	minor_base=C	minor_cov=1/0	new_cov=57/64	polymorphism_frequency=9.918e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/64
RA	1479	.	NC_000913	3555047	0	G	T	bias_e_value=3896180	bias_p_value=0.839396	consensus_score=333.0	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/47	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=50/47	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=50/48
RA	1480	.	NC_000913	3555048	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=328.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=49/48	major_frequency=9.898e-01	minor_base=A	minor_cov=1/0	new_cov=49/48	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	1481	.	NC_000913	3560362	0	G	A	consensus_score=315.7	frequency=1	major_base=A	major_cov=43/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/49
RA	1482	.	NC_000913	3560455	1	.	G	consensus_score=341.2	frequency=1	major_base=G	major_cov=54/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	1483	.	NC_000913	3591074	0	G	A	consensus_score=242.6	frequency=1	major_base=A	major_cov=31/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/44
RA	1484	.	NC_000913	3630221	0	C	T	consensus_score=242.9	frequency=1	major_base=T	major_cov=45/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/26
RA	1485	.	NC_000913	3664594	0	G	A	consensus_score=372.3	frequency=1	major_base=A	major_cov=55/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/56
RA	1486	.	NC_000913	3665576	0	C	T	consensus_score=474.5	frequency=1	major_base=T	major_cov=76/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/65
RA	1487	.	NC_000913	3669715	0	G	T	bias_e_value=0.00301034	bias_p_value=6.4855e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.7	fisher_strand_p_value=2.55429e-11	frequency=2.917e-01	ks_quality_p_value=1	major_base=G	major_cov=51/34	major_frequency=7.083e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.917e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=51/34	total_cov=51/69
RA	1488	.	NC_000913	3707883	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=370.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999379	major_base=A	major_cov=66/47	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=66/47	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=67/48
RA	1489	.	NC_000913	3707947	0	C	A	consensus_score=421.7	frequency=1	major_base=A	major_cov=69/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/53
RA	1490	.	NC_000913	3719429	0	G	A	bias_e_value=2557280	bias_p_value=0.550943	consensus_score=383.3	fisher_strand_p_value=0.218833	frequency=1	ks_quality_p_value=0.998812	major_base=A	major_cov=53/62	major_frequency=9.829e-01	minor_base=G	minor_cov=2/0	new_cov=53/62	polymorphism_frequency=9.829e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=2/0	total_cov=55/62
RA	1491	.	NC_000913	3725176	0	T	G	consensus_score=365.0	frequency=1	major_base=G	major_cov=46/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/58
RA	1492	.	NC_000913	3729440	0	C	T	consensus_score=304.7	frequency=1	major_base=T	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	1493	.	NC_000913	3729441	0	C	T	consensus_score=315.0	frequency=1	major_base=T	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	1494	.	NC_000913	3730560	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=307.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/58	major_frequency=9.901e-01	minor_base=G	minor_cov=0/1	new_cov=42/58	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=43/59
RA	1495	.	NC_000913	3741871	0	G	T	bias_e_value=0.442267	bias_p_value=9.52822e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.2	fisher_strand_p_value=4.7238e-09	frequency=2.441e-01	ks_quality_p_value=1	major_base=G	major_cov=52/44	major_frequency=7.559e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.441e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=52/44	total_cov=53/75
RA	1496	.	NC_000913	3768435	0	C	A	bias_e_value=1.3482e-11	bias_p_value=2.90456e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=441.1	fisher_strand_p_value=6.42728e-20	frequency=2.379e-01	ks_quality_p_value=1	major_base=C	major_cov=50/107	major_frequency=7.621e-01	minor_base=A	minor_cov=49/0	new_cov=49/0	polymorphism_frequency=2.379e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=50/107	total_cov=99/107
RA	1497	.	NC_000913	3770539	0	C	T	consensus_score=371.6	frequency=1	major_base=T	major_cov=57/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/54
RA	1498	.	NC_000913	3773173	0	G	.	consensus_score=455.2	frequency=1	major_base=.	major_cov=52/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/42
RA	1499	.	NC_000913	3773176	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=322.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/43	major_frequency=9.895e-01	minor_base=C	minor_cov=1/0	new_cov=51/43	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/43
RA	1500	.	NC_000913	3815883	1	.	C	bias_e_value=4356270	bias_p_value=0.938518	consensus_score=360.3	fisher_strand_p_value=0.676854	frequency=1	ks_quality_p_value=0.990604	major_base=C	major_cov=40/64	major_frequency=9.455e-01	minor_base=.	minor_cov=3/3	new_cov=40/64	polymorphism_frequency=9.455e-01	polymorphism_score=12.3	prediction=consensus	ref_cov=3/3	total_cov=43/67
RA	1501	.	NC_000913	3834564	0	G	A	consensus_score=397.7	frequency=1	major_base=A	major_cov=58/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/60
RA	1502	.	NC_000913	3896780	0	C	A	bias_e_value=1.12012e-09	bias_p_value=2.41318e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.9	fisher_strand_p_value=5.93419e-18	frequency=3.106e-01	ks_quality_p_value=1	major_base=C	major_cov=23/68	major_frequency=6.894e-01	minor_base=A	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=3.106e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=23/68	total_cov=64/68
RA	1503	.	NC_000913	3926991	0	G	A	consensus_score=458.1	frequency=1	major_base=A	major_cov=91/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=91/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=91/50
RA	1504	.	NC_000913	3931779	0	T	C	consensus_score=343.1	frequency=1	major_base=C	major_cov=40/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/57
RA	1505	.	NC_000913	3966530	0	C	T	consensus_score=347.9	frequency=1	major_base=T	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	1506	.	NC_000913	3966531	0	C	T	bias_e_value=3812300	bias_p_value=0.821324	consensus_score=345.7	fisher_strand_p_value=0.465347	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/46	major_frequency=9.901e-01	minor_base=G	minor_cov=0/1	new_cov=54/46	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	1507	.	NC_000913	3967770	0	C	T	consensus_score=431.8	frequency=1	major_base=T	major_cov=68/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/59
RA	1508	.	NC_000913	4037496	0	A	T	bias_e_value=4203680	bias_p_value=0.905642	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.7	fisher_strand_p_value=0.622114	frequency=4.238e-01	ks_quality_p_value=0.961776	major_base=A	major_cov=48/39	major_frequency=5.762e-01	minor_base=T	minor_cov=38/26	new_cov=38/26	polymorphism_frequency=4.238e-01	polymorphism_score=234.7	prediction=polymorphism	ref_cov=48/39	total_cov=86/65
RA	1509	.	NC_000913	4133252	0	C	T	bias_e_value=4641630	bias_p_value=0.999996	consensus_score=329.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997235	major_base=T	major_cov=36/71	major_frequency=9.907e-01	minor_base=G	minor_cov=0/1	new_cov=36/71	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/72
RA	1510	.	NC_000913	4159010	0	C	T	consensus_score=273.2	frequency=1	major_base=T	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	1511	.	NC_000913	4159179	0	G	A	consensus_score=218.9	frequency=1	major_base=A	major_cov=23/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/42
RA	1512	.	NC_000913	4159180	0	G	A	consensus_score=218.8	frequency=1	major_base=A	major_cov=23/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/42
RA	1513	.	NC_000913	4193996	0	T	G	consensus_score=245.9	frequency=1	major_base=G	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	1514	.	NC_000913	4215670	0	G	T	consensus_score=367.0	frequency=1	major_base=T	major_cov=56/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/52
RA	1515	.	NC_000913	4223638	0	T	C	bias_e_value=3898130	bias_p_value=0.839816	consensus_score=349.9	fisher_strand_p_value=0.490385	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/53	major_frequency=9.904e-01	minor_base=A	minor_cov=1/0	new_cov=50/53	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	1516	.	NC_000913	4238232	0	C	T	consensus_score=224.4	frequency=1	major_base=T	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	1517	.	NC_000913	4272711	0	C	T	consensus_score=330.2	frequency=1	major_base=T	major_cov=42/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/56
RA	1518	.	NC_000913	4275204	0	C	T	consensus_score=336.6	frequency=1	major_base=T	major_cov=55/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/45
RA	1519	.	NC_000913	4276212	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=472.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/84	major_frequency=9.930e-01	minor_base=G	minor_cov=0/1	new_cov=57/84	polymorphism_frequency=9.930e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/85
RA	1520	.	NC_000913	4276422	0	C	T	consensus_score=374.0	frequency=1	major_base=T	major_cov=51/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	1521	.	NC_000913	4281093	0	G	A	bias_e_value=3341140	bias_p_value=0.719816	consensus_score=288.8	fisher_strand_p_value=0.352273	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/57	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=30/57	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=31/58
RA	1522	.	NC_000913	4283043	0	G	A	bias_e_value=3889350	bias_p_value=0.837924	consensus_score=472.5	fisher_strand_p_value=0.489051	frequency=1	ks_quality_p_value=0.99732	major_base=A	major_cov=66/70	major_frequency=9.927e-01	minor_base=.	minor_cov=1/0	new_cov=66/70	polymorphism_frequency=9.927e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/0	total_cov=67/70
RA	1523	.	NC_000913	4283465	0	G	A	consensus_score=340.8	frequency=1	major_base=A	major_cov=55/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/47
RA	1524	.	NC_000913	4284646	0	G	A	consensus_score=332.7	frequency=1	major_base=A	major_cov=37/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/64
RA	1525	.	NC_000913	4285238	0	G	A	bias_e_value=2112040	bias_p_value=0.455018	consensus_score=240.9	fisher_strand_p_value=0.160987	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/47	major_frequency=9.747e-01	minor_base=G	minor_cov=2/0	new_cov=30/47	polymorphism_frequency=9.747e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=32/47
RA	1526	.	NC_000913	4288385	0	G	A	consensus_score=370.8	frequency=1	major_base=A	major_cov=51/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	1527	.	NC_000913	4296380	1	.	C	bias_e_value=3137690	bias_p_value=0.675985	consensus_score=258.4	fisher_strand_p_value=0.3125	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=55/24	major_frequency=9.875e-01	minor_base=T	minor_cov=0/1	new_cov=55/24	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=55/26
RA	1528	.	NC_000913	4296380	2	.	G	bias_e_value=3182980	bias_p_value=0.685743	consensus_score=258.0	fisher_strand_p_value=0.320988	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=55/25	major_frequency=9.877e-01	minor_base=.	minor_cov=0/1	new_cov=55/25	polymorphism_frequency=9.877e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=55/26
RA	1529	.	NC_000913	4296428	0	G	A	bias_e_value=4036910	bias_p_value=0.869713	consensus_score=325.4	fisher_strand_p_value=0.535123	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=64/37	major_frequency=9.806e-01	minor_base=C	minor_cov=2/0	new_cov=64/37	polymorphism_frequency=9.806e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=66/38
RA	1530	.	NC_000913	4297782	0	G	A	consensus_score=382.7	frequency=1	major_base=A	major_cov=72/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/46
RA	1531	.	NC_000913	4298401	0	G	A	consensus_score=186.8	frequency=1	major_base=A	major_cov=21/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/35
RA	1532	.	NC_000913	4306035	0	C	T	consensus_score=279.6	frequency=1	major_base=T	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	1533	.	NC_000913	4306960	0	G	A	consensus_score=234.7	frequency=1	major_base=A	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	1534	.	NC_000913	4307151	0	G	A	consensus_score=272.5	frequency=1	major_base=A	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	1535	.	NC_000913	4318215	0	G	A	bias_e_value=4641590	bias_p_value=0.999986	consensus_score=186.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994754	major_base=A	major_cov=34/24	major_frequency=9.831e-01	minor_base=G	minor_cov=1/0	new_cov=34/24	polymorphism_frequency=9.831e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=1/0	total_cov=35/24
RA	1536	.	NC_000913	4320007	0	G	A	consensus_score=156.3	frequency=1	major_base=A	major_cov=17/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/30
RA	1537	.	NC_000913	4320344	0	G	A	consensus_score=117.4	frequency=1	major_base=A	major_cov=26/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/12
RA	1538	.	NC_000913	4320416	0	G	A	consensus_score=144.1	frequency=1	major_base=A	major_cov=21/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/24
RA	1539	.	NC_000913	4320543	0	G	A	consensus_score=181.3	frequency=1	major_base=A	major_cov=27/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	1540	.	NC_000913	4321488	0	G	A	consensus_score=130.5	frequency=1	major_base=A	major_cov=20/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/19
RA	1541	.	NC_000913	4321603	0	T	C	bias_e_value=3436670	bias_p_value=0.740399	consensus_score=167.5	fisher_strand_p_value=0.372549	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=18/32	major_frequency=9.804e-01	minor_base=A	minor_cov=1/0	new_cov=18/32	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/32
RA	1542	.	NC_000913	4322786	0	G	A	consensus_score=213.6	frequency=1	major_base=A	major_cov=42/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/27
RA	1543	.	NC_000913	4325644	0	C	T	consensus_score=256.3	frequency=1	major_base=T	major_cov=28/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/49
RA	1544	.	NC_000913	4328622	0	T	C	consensus_score=333.3	frequency=1	major_base=C	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	1545	.	NC_000913	4331890	0	C	T	consensus_score=335.9	frequency=1	major_base=T	major_cov=48/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	1546	.	NC_000913	4340953	0	C	T	consensus_score=382.5	frequency=1	major_base=T	major_cov=67/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/46
RA	1547	.	NC_000913	4344501	0	G	A	consensus_score=440.4	frequency=1	major_base=A	major_cov=55/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/74
RA	1548	.	NC_000913	4344935	0	G	A	consensus_score=316.3	frequency=1	major_base=A	major_cov=56/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/40
RA	1549	.	NC_000913	4360965	0	C	A	bias_e_value=7.31331e-10	bias_p_value=1.57558e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.4	fisher_strand_p_value=3.83327e-18	frequency=3.264e-01	ks_quality_p_value=1	major_base=C	major_cov=29/68	major_frequency=6.736e-01	minor_base=A	minor_cov=47/0	new_cov=47/0	polymorphism_frequency=3.264e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=29/68	total_cov=76/68
RA	1550	.	NC_000913	4390331	0	C	T	consensus_score=362.3	frequency=1	major_base=T	major_cov=63/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/46
RA	1551	.	NC_000913	4402938	0	G	A	bias_e_value=3798710	bias_p_value=0.818395	consensus_score=212.5	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/29	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=35/29	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=35/30
RA	1552	.	NC_000913	4410859	0	C	T	consensus_score=291.2	frequency=1	major_base=T	major_cov=26/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/61
RA	1553	.	NC_000913	4414192	0	G	A	consensus_score=365.6	frequency=1	major_base=A	major_cov=44/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/64
RA	1554	.	NC_000913	4430584	0	C	T	consensus_score=263.1	frequency=1	major_base=T	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	1555	.	NC_000913	4431220	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=311.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/48	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=48/48	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/49
RA	1556	.	NC_000913	4437890	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=462.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=61/77	major_frequency=9.928e-01	minor_base=G	minor_cov=0/1	new_cov=61/77	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=61/79
RA	1557	.	NC_000913	4439578	0	G	A	consensus_score=428.3	frequency=1	major_base=A	major_cov=56/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/69
RA	1558	.	NC_000913	4440768	0	G	A	consensus_score=283.8	frequency=1	major_base=A	major_cov=41/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	1559	.	NC_000913	4445315	0	C	T	consensus_score=299.1	frequency=1	major_base=T	major_cov=49/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/39
RA	1560	.	NC_000913	4445924	0	C	T	consensus_score=302.7	frequency=1	major_base=T	major_cov=55/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/33
RA	1561	.	NC_000913	4446482	0	C	T	consensus_score=229.5	frequency=1	major_base=T	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	1562	.	NC_000913	4448304	0	C	T	consensus_score=342.7	frequency=1	major_base=T	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	1563	.	NC_000913	4463952	0	G	A	bias_e_value=3680280	bias_p_value=0.79288	consensus_score=243.1	fisher_strand_p_value=0.44	frequency=1	ks_quality_p_value=0.977201	major_base=A	major_cov=32/42	major_frequency=9.867e-01	minor_base=G	minor_cov=1/0	new_cov=32/42	polymorphism_frequency=9.867e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=33/42
RA	1564	.	NC_000913	4473900	0	C	T	consensus_score=290.2	frequency=1	major_base=T	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	1565	.	NC_000913	4475493	0	T	C	bias_e_value=2679460	bias_p_value=0.577265	consensus_score=440.5	fisher_strand_p_value=0.236345	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=60/65	major_frequency=9.843e-01	minor_base=A	minor_cov=2/0	new_cov=60/65	polymorphism_frequency=9.843e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/65
RA	1566	.	NC_000913	4476605	0	G	A	consensus_score=323.7	frequency=1	major_base=A	major_cov=44/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/50
RA	1567	.	NC_000913	4489016	0	C	T	consensus_score=290.8	frequency=1	major_base=T	major_cov=51/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/35
RA	1568	.	NC_000913	4492470	0	C	A	consensus_score=340.3	frequency=1	major_base=A	major_cov=52/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/49
RA	1569	.	NC_000913	4492583	1	.	G	bias_e_value=3841320	bias_p_value=0.827576	consensus_score=367.9	fisher_strand_p_value=0.479293	frequency=1	ks_quality_p_value=0.988154	major_base=G	major_cov=56/50	major_frequency=9.298e-01	minor_base=.	minor_cov=3/5	new_cov=56/50	polymorphism_frequency=9.298e-01	polymorphism_score=19.8	prediction=consensus	ref_cov=3/5	total_cov=59/55
RA	1570	.	NC_000913	4495194	0	A	T	consensus_score=246.1	frequency=1	major_base=T	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	1571	.	NC_000913	4496168	0	G	T	consensus_score=224.6	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	1572	.	NC_000913	4496885	0	G	A	consensus_score=382.6	frequency=1	major_base=A	major_cov=64/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/49
RA	1573	.	NC_000913	4507424	0	G	C	consensus_score=357.7	frequency=1	major_base=C	major_cov=51/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	1574	.	NC_000913	4509416	0	T	C	bias_e_value=4306960	bias_p_value=0.927894	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.0	fisher_strand_p_value=0.646376	frequency=4.335e-01	ks_quality_p_value=0.998075	major_base=T	major_cov=54/44	major_frequency=5.665e-01	minor_base=C	minor_cov=44/31	new_cov=44/31	polymorphism_frequency=4.335e-01	polymorphism_score=210.3	prediction=polymorphism	ref_cov=54/44	total_cov=98/75
RA	1575	.	NC_000913	4509428	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.5	fisher_strand_p_value=1	frequency=4.320e-01	ks_quality_p_value=1	major_base=A	major_cov=55/41	major_frequency=5.680e-01	minor_base=G	minor_cov=41/32	new_cov=41/32	polymorphism_frequency=4.320e-01	polymorphism_score=196.4	prediction=polymorphism	ref_cov=55/41	total_cov=96/73
RA	1576	.	NC_000913	4509463	0	T	G	bias_e_value=4604910	bias_p_value=0.992084	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.9	fisher_strand_p_value=0.87684	frequency=4.220e-01	ks_quality_p_value=1	major_base=T	major_cov=57/43	major_frequency=5.780e-01	minor_base=G	minor_cov=40/33	new_cov=40/33	polymorphism_frequency=4.220e-01	polymorphism_score=225.1	prediction=polymorphism	ref_cov=57/43	total_cov=98/76
RA	1577	.	NC_000913	4509478	1	.	C	bias_e_value=3600540	bias_p_value=0.775701	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.6	fisher_strand_p_value=0.754521	frequency=4.094e-01	ks_quality_p_value=0.543609	major_base=.	major_cov=58/43	major_frequency=5.906e-01	minor_base=C	minor_cov=38/32	new_cov=38/32	polymorphism_frequency=4.094e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=58/43	total_cov=96/75
RA	1578	.	NC_000913	4509487	0	A	G	bias_e_value=4174150	bias_p_value=0.899281	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.9	fisher_strand_p_value=0.754462	frequency=4.405e-01	ks_quality_p_value=0.776964	major_base=A	major_cov=54/40	major_frequency=5.595e-01	minor_base=G	minor_cov=40/34	new_cov=40/34	polymorphism_frequency=4.405e-01	polymorphism_score=213.2	prediction=polymorphism	ref_cov=54/40	total_cov=94/74
RA	1579	.	NC_000913	4509524	0	C	T	bias_e_value=4339500	bias_p_value=0.934905	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.9	fisher_strand_p_value=0.760857	frequency=4.213e-01	ks_quality_p_value=0.869552	major_base=C	major_cov=57/46	major_frequency=5.787e-01	minor_base=T	minor_cov=39/36	new_cov=39/36	polymorphism_frequency=4.213e-01	polymorphism_score=205.6	prediction=polymorphism	ref_cov=57/46	total_cov=96/82
RA	1580	.	NC_000913	4509537	0	G	A	bias_e_value=3752540	bias_p_value=0.80845	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.5	fisher_strand_p_value=1	frequency=4.286e-01	ks_quality_p_value=0.448901	major_base=G	major_cov=53/47	major_frequency=5.714e-01	minor_base=A	minor_cov=39/36	new_cov=39/36	polymorphism_frequency=4.286e-01	polymorphism_score=204.6	prediction=polymorphism	ref_cov=53/47	total_cov=92/83
RA	1581	.	NC_000913	4509544	0	G	A	bias_e_value=4640140	bias_p_value=0.999674	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.2	fisher_strand_p_value=1	frequency=4.310e-01	ks_quality_p_value=0.974568	major_base=G	major_cov=51/48	major_frequency=5.690e-01	minor_base=A	minor_cov=39/36	new_cov=39/36	polymorphism_frequency=4.310e-01	polymorphism_score=205.7	prediction=polymorphism	ref_cov=51/48	total_cov=91/84
RA	1582	.	NC_000913	4509556	0	T	C	bias_e_value=4639810	bias_p_value=0.999604	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.9	fisher_strand_p_value=1	frequency=4.118e-01	ks_quality_p_value=0.971996	major_base=T	major_cov=55/45	major_frequency=5.882e-01	minor_base=C	minor_cov=38/32	new_cov=38/32	polymorphism_frequency=4.118e-01	polymorphism_score=195.1	prediction=polymorphism	ref_cov=55/45	total_cov=93/77
RA	1583	.	NC_000913	4509562	0	T	C	bias_e_value=3905420	bias_p_value=0.841386	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.4	fisher_strand_p_value=1	frequency=4.104e-01	ks_quality_p_value=0.492596	major_base=T	major_cov=56/46	major_frequency=5.896e-01	minor_base=C	minor_cov=39/32	new_cov=39/32	polymorphism_frequency=4.104e-01	polymorphism_score=195.3	prediction=polymorphism	ref_cov=56/46	total_cov=95/78
RA	1584	.	NC_000913	4509586	0	A	C	bias_e_value=64497.3	bias_p_value=0.0138953	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.2	fisher_strand_p_value=0.0039617	frequency=5.000e-01	ks_quality_p_value=0.483225	major_base=C	major_cov=37/51	major_frequency=5.000e-01	minor_base=A	minor_cov=57/31	new_cov=37/51	polymorphism_frequency=5.000e-01	polymorphism_score=207.0	prediction=polymorphism	ref_cov=57/31	total_cov=94/82
RA	1585	.	NC_000913	4509592	0	G	A	bias_e_value=4387730	bias_p_value=0.945295	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.7	fisher_strand_p_value=0.754748	frequency=3.837e-01	ks_quality_p_value=0.911584	major_base=G	major_cov=53/53	major_frequency=6.163e-01	minor_base=A	minor_cov=35/31	new_cov=35/31	polymorphism_frequency=3.837e-01	polymorphism_score=174.9	prediction=polymorphism	ref_cov=53/53	total_cov=88/84
RA	1586	.	NC_000913	4509623	0	G	A	bias_e_value=3593630	bias_p_value=0.774213	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.7	fisher_strand_p_value=0.411137	frequency=3.562e-01	ks_quality_p_value=0.99358	major_base=G	major_cov=45/58	major_frequency=6.438e-01	minor_base=A	minor_cov=29/28	new_cov=29/28	polymorphism_frequency=3.562e-01	polymorphism_score=147.1	prediction=polymorphism	ref_cov=45/58	total_cov=74/86
RA	1587	.	NC_000913	4509628	0	A	G	bias_e_value=4641640	bias_p_value=0.999997	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.9	fisher_strand_p_value=1	frequency=3.133e-01	ks_quality_p_value=0.997686	major_base=A	major_cov=45/58	major_frequency=6.867e-01	minor_base=G	minor_cov=21/26	new_cov=21/26	polymorphism_frequency=3.133e-01	polymorphism_score=123.4	prediction=polymorphism	ref_cov=45/58	total_cov=66/84
RA	1588	.	NC_000913	4509630	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.6	fisher_strand_p_value=1	frequency=3.113e-01	ks_quality_p_value=1	major_base=C	major_cov=46/58	major_frequency=6.887e-01	minor_base=T	minor_cov=21/26	new_cov=21/26	polymorphism_frequency=3.113e-01	polymorphism_score=115.9	prediction=polymorphism	ref_cov=46/58	total_cov=67/84
RA	1589	.	NC_000913	4509632	0	A	G	bias_e_value=4639120	bias_p_value=0.999455	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.7	fisher_strand_p_value=1	frequency=3.113e-01	ks_quality_p_value=0.967165	major_base=A	major_cov=46/58	major_frequency=6.887e-01	minor_base=G	minor_cov=21/26	new_cov=21/26	polymorphism_frequency=3.113e-01	polymorphism_score=123.9	prediction=polymorphism	ref_cov=46/58	total_cov=67/84
RA	1590	.	NC_000913	4509633	0	C	T	bias_e_value=1519310	bias_p_value=0.32732	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.9	fisher_strand_p_value=0.859573	frequency=3.087e-01	ks_quality_p_value=0.114857	major_base=C	major_cov=45/58	major_frequency=6.913e-01	minor_base=T	minor_cov=21/25	new_cov=21/25	polymorphism_frequency=3.087e-01	polymorphism_score=120.8	prediction=polymorphism	ref_cov=45/58	total_cov=67/84
RA	1591	.	NC_000913	4509637	0	C	T	bias_e_value=4629720	bias_p_value=0.99743	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.6	fisher_strand_p_value=1	frequency=3.092e-01	ks_quality_p_value=0.929163	major_base=C	major_cov=47/58	major_frequency=6.908e-01	minor_base=T	minor_cov=21/26	new_cov=21/26	polymorphism_frequency=3.092e-01	polymorphism_score=120.6	prediction=polymorphism	ref_cov=47/58	total_cov=68/84
RA	1592	.	NC_000913	4509640	0	T	C	bias_e_value=4172940	bias_p_value=0.899021	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.8	fisher_strand_p_value=0.862063	frequency=3.013e-01	ks_quality_p_value=0.679421	major_base=T	major_cov=51/58	major_frequency=6.987e-01	minor_base=C	minor_cov=21/26	new_cov=21/26	polymorphism_frequency=3.013e-01	polymorphism_score=122.1	prediction=polymorphism	ref_cov=51/58	total_cov=72/84
RA	1593	.	NC_000913	4509655	0	T	G	bias_e_value=3942810	bias_p_value=0.849441	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.8	fisher_strand_p_value=0.720239	frequency=3.034e-01	ks_quality_p_value=0.699992	major_base=T	major_cov=52/49	major_frequency=6.966e-01	minor_base=G	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=3.034e-01	polymorphism_score=133.0	prediction=polymorphism	ref_cov=52/49	total_cov=73/72
RA	1594	.	NC_000913	4509667	0	A	C	bias_e_value=4593880	bias_p_value=0.989708	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.0	fisher_strand_p_value=0.860036	frequency=2.876e-01	ks_quality_p_value=0.999956	major_base=A	major_cov=54/55	major_frequency=7.124e-01	minor_base=C	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=2.876e-01	polymorphism_score=122.7	prediction=polymorphism	ref_cov=54/55	total_cov=75/78
RA	1595	.	NC_000913	4510238	0	T	G	bias_e_value=63405.1	bias_p_value=0.01366	consensus_score=453.2	fisher_strand_p_value=0.00187685	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=78/61	major_frequency=9.456e-01	minor_base=T	minor_cov=0/8	new_cov=78/61	polymorphism_frequency=9.456e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/8	total_cov=78/69
RA	1596	.	NC_000913	4512293	0	T	C	consensus_score=159.1	frequency=1	major_base=C	major_cov=18/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/29
RA	1597	.	NC_000913	4512501	0	C	T	consensus_score=200.0	frequency=1	major_base=T	major_cov=41/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/21
RA	1598	.	NC_000913	4512642	0	T	C	consensus_score=170.3	frequency=1	major_base=C	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	1599	.	NC_000913	4513044	0	T	C	consensus_score=241.1	frequency=1	major_base=C	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	1600	.	NC_000913	4513841	0	A	G	consensus_score=236.4	frequency=1	major_base=G	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	1601	.	NC_000913	4514139	0	A	C	consensus_score=204.2	frequency=1	major_base=C	major_cov=24/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/36
RA	1602	.	NC_000913	4514287	0	G	C	bias_e_value=3607140	bias_p_value=0.777125	consensus_score=232.7	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=27/40	major_frequency=9.853e-01	minor_base=A	minor_cov=1/0	new_cov=27/40	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/40
RA	1603	.	NC_000913	4514983	0	A	C	consensus_score=288.1	frequency=1	major_base=C	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	1604	.	NC_000913	4515348	0	A	C	consensus_score=221.3	frequency=1	major_base=C	major_cov=21/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/43
RA	1605	.	NC_000913	4516110	0	C	T	consensus_score=103.5	frequency=1	major_base=T	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	1606	.	NC_000913	4516378	0	G	A	consensus_score=196.2	frequency=1	major_base=A	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	1607	.	NC_000913	4516632	0	T	C	consensus_score=279.6	frequency=1	major_base=C	major_cov=59/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/26
RA	1608	.	NC_000913	4516959	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=386.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=59/59	major_frequency=9.916e-01	minor_base=C	minor_cov=1/0	new_cov=59/59	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=60/59
RA	1609	.	NC_000913	4517127	0	C	A	consensus_score=360.0	frequency=1	major_base=A	major_cov=51/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	1610	.	NC_000913	4518627	0	C	A	consensus_score=301.5	frequency=1	major_base=A	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	1611	.	NC_000913	4518681	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=243.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=40/33	major_frequency=9.865e-01	minor_base=T	minor_cov=1/0	new_cov=40/33	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	1612	.	NC_000913	4518793	0	C	T	consensus_score=241.7	frequency=1	major_base=T	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	1613	.	NC_000913	4530252	0	C	A	consensus_score=336.5	frequency=1	major_base=A	major_cov=43/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/57
RA	1614	.	NC_000913	4532063	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=396.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=60/59	major_frequency=9.917e-01	minor_base=G	minor_cov=0/1	new_cov=60/59	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/60
RA	1615	.	NC_000913	4535073	0	A	G	bias_e_value=4640980	bias_p_value=0.999854	consensus_score=454.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.982973	major_base=G	major_cov=52/77	major_frequency=9.923e-01	minor_base=T	minor_cov=0/1	new_cov=52/77	polymorphism_frequency=9.923e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=52/78
RA	1616	.	NC_000913	4535189	0	C	T	consensus_score=398.0	frequency=1	major_base=T	major_cov=50/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/70
RA	1617	.	NC_000913	4540111	0	A	G	consensus_score=547.3	frequency=1	major_base=G	major_cov=68/87	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/87	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/87
RA	1618	.	NC_000913	4540114	0	A	T	consensus_score=516.8	frequency=1	major_base=T	major_cov=68/87	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/87	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/87
RA	1619	.	NC_000913	4540430	0	C	A	bias_e_value=0.000532645	bias_p_value=1.14753e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.7	fisher_strand_p_value=4.22025e-12	frequency=2.597e-01	ks_quality_p_value=1	major_base=C	major_cov=50/64	major_frequency=7.403e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.597e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=50/64	total_cov=90/64
RA	1620	.	NC_000913	4540431	0	T	C	bias_e_value=1284970	bias_p_value=0.276835	consensus_score=486.7	fisher_strand_p_value=0.0779427	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=85/63	major_frequency=9.673e-01	minor_base=A	minor_cov=5/0	new_cov=85/63	polymorphism_frequency=9.673e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=90/64
RA	1621	.	NC_000913	4542683	0	T	.	bias_e_value=833198	bias_p_value=0.179505	consensus_score=648.2	fisher_strand_p_value=0.0433828	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=83/59	major_frequency=9.530e-01	minor_base=T	minor_cov=1/6	new_cov=83/59	polymorphism_frequency=9.530e-01	polymorphism_score=20.5	prediction=consensus	ref_cov=1/6	total_cov=86/65
RA	1622	.	NC_000913	4542692	1	.	A	bias_e_value=4408000	bias_p_value=0.949663	consensus_score=491.9	fisher_strand_p_value=0.699973	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=82/63	major_frequency=9.539e-01	minor_base=.	minor_cov=3/4	new_cov=82/63	polymorphism_frequency=9.539e-01	polymorphism_score=17.5	prediction=consensus	ref_cov=3/4	total_cov=85/67
RA	1623	.	NC_000913	4543047	0	T	G	consensus_score=290.8	frequency=1	major_base=G	major_cov=56/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/30
RA	1624	.	NC_000913	4544464	0	A	T	consensus_score=372.3	frequency=1	major_base=T	major_cov=49/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/60
RA	1625	.	NC_000913	4546272	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=302.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=44/41	major_frequency=9.884e-01	minor_base=A	minor_cov=1/0	new_cov=44/41	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/41
RA	1626	.	NC_000913	4549223	0	T	G	bias_e_value=4641010	bias_p_value=0.999862	consensus_score=340.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983441	major_base=G	major_cov=59/39	major_frequency=9.899e-01	minor_base=T	minor_cov=1/0	new_cov=59/39	polymorphism_frequency=9.899e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=60/39
RA	1627	.	NC_000913	4553609	0	T	A	consensus_score=270.8	frequency=1	major_base=A	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	1628	.	NC_000913	4556917	0	A	G	bias_e_value=3960600	bias_p_value=0.853274	consensus_score=384.4	fisher_strand_p_value=0.509804	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=50/68	major_frequency=9.833e-01	minor_base=T	minor_cov=0/2	new_cov=50/68	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/70
RA	1629	.	NC_000913	4560309	0	T	A	consensus_score=336.2	frequency=1	major_base=A	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	1630	.	NC_000913	4563567	0	T	C	bias_e_value=2128300	bias_p_value=0.458522	consensus_score=475.7	fisher_strand_p_value=0.162911	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=54/82	major_frequency=9.855e-01	minor_base=A	minor_cov=2/0	new_cov=54/82	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/82
RA	1631	.	NC_000913	4564141	0	T	G	consensus_score=256.2	frequency=1	major_base=G	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	1632	.	NC_000913	4567272	0	C	A	consensus_score=259.4	frequency=1	major_base=A	major_cov=33/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/44
RA	1633	.	NC_000913	4569307	0	T	C	bias_e_value=3726110	bias_p_value=0.802755	consensus_score=288.7	fisher_strand_p_value=0.44186	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=37/48	major_frequency=9.884e-01	minor_base=T	minor_cov=1/0	new_cov=37/48	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/48
RA	1634	.	NC_000913	4591610	0	C	G	consensus_score=68.4	deleted=1	frequency=1	major_base=G	major_cov=6/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/16
RA	1635	.	NC_000913	4591674	0	A	G	bias_e_value=4639510	bias_p_value=0.999538	consensus_score=186.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.969765	major_base=G	major_cov=17/39	major_frequency=9.825e-01	minor_base=T	minor_cov=0/1	new_cov=17/39	polymorphism_frequency=9.825e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=17/40
RA	1636	.	NC_000913	4591677	0	T	C	bias_e_value=3059190	bias_p_value=0.659074	consensus_score=191.4	fisher_strand_p_value=0.298246	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=16/40	major_frequency=9.825e-01	minor_base=T	minor_cov=1/0	new_cov=16/40	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=17/40
RA	1637	.	NC_000913	4591930	0	G	C	consensus_score=425.6	frequency=1	major_base=C	major_cov=59/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/61
RA	1638	.	NC_000913	4591974	0	G	A	consensus_score=378.3	frequency=1	major_base=A	major_cov=51/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	1639	.	NC_000913	4592082	0	G	A	consensus_score=296.4	frequency=1	major_base=A	major_cov=49/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/41
RA	1640	.	NC_000913	4592188	0	C	T	consensus_score=278.9	frequency=1	major_base=T	major_cov=41/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	1641	.	NC_000913	4595570	0	A	.	bias_e_value=4641650	bias_p_value=1	consensus_score=290.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=29/33	major_frequency=9.841e-01	minor_base=A	minor_cov=0/1	new_cov=29/33	polymorphism_frequency=9.841e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/1	total_cov=29/34
RA	1642	.	NC_000913	4602089	0	C	T	consensus_score=239.0	frequency=1	major_base=T	major_cov=35/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	1643	.	NC_000913	4605702	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=335.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/55	major_frequency=9.796e-01	minor_base=A	minor_cov=1/1	new_cov=41/55	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=42/56
RA	1644	.	NC_000913	4605791	0	A	G	bias_e_value=879955	bias_p_value=0.189578	consensus_score=334.8	fisher_strand_p_value=0.046631	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=57/47	major_frequency=9.630e-01	minor_base=T	minor_cov=0/4	new_cov=57/47	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/51
RA	1645	.	NC_000913	4614170	0	C	T	consensus_score=201.4	frequency=1	major_base=T	major_cov=27/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/33
RA	1646	.	NC_000913	4616022	0	T	C	consensus_score=305.2	frequency=1	major_base=C	major_cov=48/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/40
RA	1647	.	NC_000913	4616073	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=286.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=42/40	major_frequency=9.880e-01	minor_base=A	minor_cov=1/0	new_cov=42/40	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	1648	.	NC_000913	4616514	0	T	G	consensus_score=345.0	frequency=1	major_base=G	major_cov=43/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	1649	.	NC_000913	4616535	0	A	G	consensus_score=339.6	frequency=1	major_base=G	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	1650	.	NC_000913	4616648	0	C	T	consensus_score=272.1	frequency=1	major_base=T	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	1651	.	NC_000913	4616682	0	C	T	consensus_score=298.3	frequency=1	major_base=T	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	1652	.	NC_000913	4617053	0	G	C	consensus_score=409.1	frequency=1	major_base=C	major_cov=59/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/57
RA	1653	.	NC_000913	4617138	0	C	A	consensus_score=462.2	frequency=1	major_base=A	major_cov=58/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/76
RA	1654	.	NC_000913	4617238	0	G	A	consensus_score=392.8	frequency=1	major_base=A	major_cov=44/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/71
RA	1655	.	NC_000913	4617409	0	G	A	consensus_score=338.7	frequency=1	major_base=A	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	1656	.	NC_000913	4617412	0	C	T	consensus_score=337.9	frequency=1	major_base=T	major_cov=45/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/53
RA	1657	.	NC_000913	4617415	0	C	T	consensus_score=339.2	frequency=1	major_base=T	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	1658	.	NC_000913	4617436	0	T	C	consensus_score=342.3	frequency=1	major_base=C	major_cov=52/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	1659	.	NC_000913	4617499	0	T	A	bias_e_value=3773360	bias_p_value=0.812935	consensus_score=328.3	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/44	major_frequency=9.899e-01	minor_base=G	minor_cov=0/1	new_cov=54/44	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	1660	.	NC_000913	4617532	0	C	T	consensus_score=343.3	frequency=1	major_base=T	major_cov=57/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/44
RA	1661	.	NC_000913	4617565	0	C	T	consensus_score=309.2	frequency=1	major_base=T	major_cov=55/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/37
RA	1662	.	NC_000913	4617574	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=304.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/37	major_frequency=9.891e-01	minor_base=C	minor_cov=1/0	new_cov=54/37	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/37
RA	1663	.	NC_000913	4617616	0	T	C	consensus_score=327.1	frequency=1	major_base=C	major_cov=59/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/42
RA	1664	.	NC_000913	4617631	0	T	G	bias_e_value=3949530	bias_p_value=0.850889	consensus_score=339.6	fisher_strand_p_value=0.506494	frequency=1	ks_quality_p_value=0.999584	major_base=G	major_cov=55/42	major_frequency=9.798e-01	minor_base=T	minor_cov=2/0	new_cov=55/42	polymorphism_frequency=9.798e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=2/0	total_cov=57/42
RA	1665	.	NC_000913	4617928	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=258.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/56	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=22/56	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=22/57
RA	1666	.	NC_000913	4617976	0	T	C	consensus_score=296.4	frequency=1	major_base=C	major_cov=32/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/52
RA	1667	.	NC_000913	4618030	0	C	T	consensus_score=254.5	frequency=1	major_base=T	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	1668	.	NC_000913	4618055	0	C	T	consensus_score=244.8	frequency=1	major_base=T	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	1669	.	NC_000913	4618069	0	T	C	consensus_score=241.0	frequency=1	major_base=C	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	1670	.	NC_000913	4618075	0	C	T	consensus_score=217.7	frequency=1	major_base=T	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	1671	.	NC_000913	4618276	0	G	A	consensus_score=251.4	frequency=1	major_base=A	major_cov=43/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/33
RA	1672	.	NC_000913	4618312	0	T	C	consensus_score=277.6	frequency=1	major_base=C	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	1673	.	NC_000913	4618483	0	C	T	consensus_score=280.1	frequency=1	major_base=T	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	1674	.	NC_000913	4618489	0	C	T	consensus_score=290.5	frequency=1	major_base=T	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	1675	.	NC_000913	4618702	0	T	C	consensus_score=260.5	frequency=1	major_base=C	major_cov=26/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/49
RA	1676	.	NC_000913	4618717	0	T	G	consensus_score=271.8	frequency=1	major_base=G	major_cov=29/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/48
RA	1677	.	NC_000913	4618804	0	T	G	consensus_score=272.7	frequency=1	major_base=G	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	1678	.	NC_000913	4619026	0	A	G	consensus_score=267.2	frequency=1	major_base=G	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	1679	.	NC_000913	4619080	0	G	T	consensus_score=265.5	frequency=1	major_base=T	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	1680	.	NC_000913	4619131	0	G	A	consensus_score=261.3	frequency=1	major_base=A	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	1681	.	NC_000913	4619134	0	G	A	consensus_score=263.5	frequency=1	major_base=A	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	1682	.	NC_000913	4619197	0	G	A	consensus_score=252.2	frequency=1	major_base=A	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	1683	.	NC_000913	4619335	0	A	T	consensus_score=242.0	frequency=1	major_base=T	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	1684	.	NC_000913	4619338	0	C	T	consensus_score=246.5	frequency=1	major_base=T	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	1685	.	NC_000913	4619359	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=269.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/45	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=35/45	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	1686	.	NC_000913	4619393	0	C	T	consensus_score=300.5	frequency=1	major_base=T	major_cov=41/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/49
RA	1687	.	NC_000913	4619454	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=313.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=43/50	major_frequency=9.894e-01	minor_base=A	minor_cov=0/1	new_cov=43/50	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=43/51
RA	1688	.	NC_000913	4619917	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=349.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=47/55	major_frequency=9.903e-01	minor_base=T	minor_cov=0/1	new_cov=47/55	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/56
RA	1689	.	NC_000913	4620067	0	A	G	consensus_score=313.2	frequency=1	major_base=G	major_cov=39/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/51
RA	1690	.	NC_000913	4620145	0	T	C	consensus_score=297.1	frequency=1	major_base=C	major_cov=38/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/49
RA	1691	.	NC_000913	4620150	0	A	G	consensus_score=298.8	frequency=1	major_base=G	major_cov=37/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/49
RA	1692	.	NC_000913	4620154	0	T	C	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=272.7	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=31/48	major_frequency=9.875e-01	minor_base=A	minor_cov=1/0	new_cov=31/48	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/48
RA	1693	.	NC_000913	4620157	0	C	T	consensus_score=255.1	frequency=1	major_base=T	major_cov=32/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/48
RA	1694	.	NC_000913	4620160	0	T	C	bias_e_value=2147240	bias_p_value=0.462602	consensus_score=269.0	fisher_strand_p_value=0.165168	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/46	major_frequency=9.744e-01	minor_base=A	minor_cov=2/0	new_cov=30/46	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=32/48
RA	1695	.	NC_000913	4620223	0	T	C	bias_e_value=3814300	bias_p_value=0.821754	consensus_score=306.3	fisher_strand_p_value=0.465909	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=40/47	major_frequency=9.886e-01	minor_base=A	minor_cov=1/0	new_cov=40/47	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	1696	.	NC_000913	4620256	0	C	T	consensus_score=286.0	frequency=1	major_base=T	major_cov=41/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	1697	.	NC_000913	4620358	0	C	T	consensus_score=244.3	frequency=1	major_base=T	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	1698	.	NC_000913	4620385	0	G	A	consensus_score=247.0	frequency=1	major_base=A	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	1699	.	NC_000913	4620415	0	A	G	bias_e_value=3682570	bias_p_value=0.793376	consensus_score=243.1	fisher_strand_p_value=0.430556	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=30/41	major_frequency=9.861e-01	minor_base=A	minor_cov=1/0	new_cov=30/41	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/41
RA	1700	.	NC_000913	4620427	0	G	A	consensus_score=249.5	frequency=1	major_base=A	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	1701	.	NC_000913	4620559	0	C	T	consensus_score=208.7	frequency=1	major_base=T	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	1702	.	NC_000913	4620571	0	A	G	consensus_score=236.1	frequency=1	major_base=G	major_cov=28/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/40
RA	1703	.	NC_000913	4620637	0	C	T	consensus_score=227.9	frequency=1	major_base=T	major_cov=26/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/43
RA	1704	.	NC_000913	4620652	0	C	T	consensus_score=222.1	frequency=1	major_base=T	major_cov=28/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/41
RA	1705	.	NC_000913	4620706	0	A	T	consensus_score=187.0	frequency=1	major_base=T	major_cov=30/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/27
RA	1706	.	NC_000913	4620709	0	T	C	consensus_score=199.2	frequency=1	major_base=C	major_cov=30/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/27
RA	1707	.	NC_000913	4620742	0	T	C	bias_e_value=3912960	bias_p_value=0.843011	consensus_score=159.0	fisher_strand_p_value=0.494898	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=25/22	major_frequency=9.592e-01	minor_base=A	minor_cov=2/0	new_cov=25/22	polymorphism_frequency=9.592e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	1708	.	NC_000913	4620763	0	C	T	consensus_score=165.0	frequency=1	major_base=T	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	1709	.	NC_000913	4620766	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=157.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/27	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=25/27	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	1710	.	NC_000913	4621236	0	C	T	consensus_score=217.8	frequency=1	major_base=T	major_cov=25/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/41
RA	1711	.	NC_000913	4621278	0	C	T	bias_e_value=3392140	bias_p_value=0.730805	consensus_score=207.5	fisher_strand_p_value=0.363636	frequency=1	ks_quality_p_value=0.998137	major_base=T	major_cov=23/42	major_frequency=9.848e-01	minor_base=C	minor_cov=1/0	new_cov=23/42	polymorphism_frequency=9.848e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=24/42
RA	1712	.	NC_000913	4621296	0	A	G	consensus_score=239.0	frequency=1	major_base=G	major_cov=27/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/42
RA	1713	.	NC_000913	4621302	0	T	C	consensus_score=214.9	frequency=1	major_base=C	major_cov=24/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/39
RA	1714	.	NC_000913	4621305	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=208.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=24/38	major_frequency=9.841e-01	minor_base=T	minor_cov=0/1	new_cov=24/38	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/39
RA	1715	.	NC_000913	4621321	0	A	G	consensus_score=209.2	frequency=1	major_base=G	major_cov=20/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/39
RA	1716	.	NC_000913	4621410	0	T	C	consensus_score=197.7	frequency=1	major_base=C	major_cov=22/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/34
RA	1717	.	NC_000913	4621458	0	A	G	consensus_score=176.0	frequency=1	major_base=G	major_cov=22/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/28
RA	1718	.	NC_000913	4621491	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=143.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=19/22	major_frequency=9.762e-01	minor_base=.	minor_cov=0/1	new_cov=19/22	polymorphism_frequency=9.762e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1719	.	NC_000913	4621542	0	T	C	bias_e_value=4641130	bias_p_value=0.999887	consensus_score=109.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.984988	major_base=C	major_cov=16/18	major_frequency=9.714e-01	minor_base=T	minor_cov=0/1	new_cov=16/18	polymorphism_frequency=9.714e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=16/19
RA	1720	.	NC_000913	4621616	0	C	A	consensus_score=53.0	deleted=1	frequency=1	major_base=A	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	1721	.	NC_000913	4621624	0	T	A	consensus_score=26.0	deleted=1	frequency=1	major_base=A	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	1722	.	NC_000913	4621625	0	T	C	consensus_score=27.8	deleted=1	frequency=1	major_base=C	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	1723	.	NC_000913	4621627	0	C	T	consensus_score=25.0	deleted=1	frequency=1	major_base=T	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	1724	.	NC_000913	4621629	0	T	G	consensus_score=30.3	deleted=1	frequency=1	major_base=G	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	1725	.	NC_000913	4621633	0	G	T	consensus_score=24.5	deleted=1	frequency=1	major_base=T	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	1726	.	NC_000913	4621644	0	G	A	consensus_score=25.5	deleted=1	frequency=1	major_base=A	major_cov=4/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/5
RA	1727	.	NC_000913	4623110	0	A	C	consensus_score=25.0	deleted=1	frequency=1	major_base=C	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	1728	.	NC_000913	4623119	0	C	T	consensus_score=26.5	deleted=1	frequency=1	major_base=T	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	1729	.	NC_000913	4623125	0	T	C	consensus_score=30.0	deleted=1	frequency=1	major_base=C	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	1730	.	NC_000913	4623127	0	C	T	consensus_score=23.6	deleted=1	frequency=1	major_base=T	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	1731	.	NC_000913	4623131	0	T	C	consensus_score=30.0	deleted=1	frequency=1	major_base=C	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	1732	.	NC_000913	4623136	0	C	T	consensus_score=30.9	deleted=1	frequency=1	major_base=T	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	1733	.	NC_000913	4623155	0	T	G	consensus_score=51.6	deleted=1	frequency=1	major_base=G	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	1734	.	NC_000913	4623188	0	C	T	consensus_score=78.5	deleted=1	frequency=1	major_base=T	major_cov=11/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/13
RA	1735	.	NC_000913	4623203	0	T	C	consensus_score=89.2	frequency=1	major_base=C	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	1736	.	NC_000913	4623230	0	T	C	consensus_score=128.5	frequency=1	major_base=C	major_cov=22/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/15
RA	1737	.	NC_000913	4623336	0	G	C	consensus_score=207.1	frequency=1	major_base=C	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	1738	.	NC_000913	4623404	0	G	A	consensus_score=226.3	frequency=1	major_base=A	major_cov=42/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/27
RA	1739	.	NC_000913	4623448	0	T	C	bias_e_value=3965240	bias_p_value=0.854274	consensus_score=235.9	fisher_strand_p_value=0.511292	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=42/30	major_frequency=9.730e-01	minor_base=A	minor_cov=2/0	new_cov=42/30	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	1740	.	NC_000913	4623470	0	C	T	consensus_score=237.3	frequency=1	major_base=T	major_cov=41/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	1741	.	NC_000913	4623473	0	G	A	consensus_score=220.8	frequency=1	major_base=A	major_cov=41/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	1742	.	NC_000913	4623502	0	C	T	consensus_score=251.8	frequency=1	major_base=T	major_cov=42/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/33
RA	1743	.	NC_000913	4623544	0	A	G	consensus_score=242.4	frequency=1	major_base=G	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	1744	.	NC_000913	4623575	0	T	C	consensus_score=223.6	frequency=1	major_base=C	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	1745	.	NC_000913	4623578	0	C	T	consensus_score=216.4	frequency=1	major_base=T	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	1746	.	NC_000913	4623581	0	C	G	consensus_score=220.9	frequency=1	major_base=G	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	1747	.	NC_000913	4623641	0	G	A	consensus_score=252.6	frequency=1	major_base=A	major_cov=31/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/46
RA	1748	.	NC_000913	4623656	0	T	C	consensus_score=264.1	frequency=1	major_base=C	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	1749	.	NC_000913	4623680	0	G	A	consensus_score=239.7	frequency=1	major_base=A	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	1750	.	NC_000913	4623707	0	G	T	consensus_score=249.5	frequency=1	major_base=T	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	1751	.	NC_000913	4623732	0	A	G	consensus_score=238.4	frequency=1	major_base=G	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	1752	.	NC_000913	4623758	0	T	C	consensus_score=258.6	frequency=1	major_base=C	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	1753	.	NC_000913	4623782	0	G	A	consensus_score=236.8	frequency=1	major_base=A	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	1754	.	NC_000913	4623821	0	A	G	consensus_score=248.5	frequency=1	major_base=G	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	1755	.	NC_000913	4623911	0	C	T	consensus_score=202.8	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	1756	.	NC_000913	4623983	0	T	C	consensus_score=239.7	frequency=1	major_base=C	major_cov=33/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/36
RA	1757	.	NC_000913	4624037	0	T	C	consensus_score=245.5	frequency=1	major_base=C	major_cov=32/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/39
RA	1758	.	NC_000913	4624055	0	T	C	bias_e_value=3719040	bias_p_value=0.801231	consensus_score=254.0	fisher_strand_p_value=0.44	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/42	major_frequency=9.867e-01	minor_base=A	minor_cov=1/0	new_cov=32/42	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	1759	.	NC_000913	4624226	0	G	A	consensus_score=235.1	frequency=1	major_base=A	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	1760	.	NC_000913	4624262	0	A	G	consensus_score=240.6	frequency=1	major_base=G	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	1761	.	NC_000913	4624277	0	G	A	consensus_score=221.5	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	1762	.	NC_000913	4624355	0	T	C	consensus_score=242.2	frequency=1	major_base=C	major_cov=45/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/28
RA	1763	.	NC_000913	4624388	0	A	C	consensus_score=225.4	frequency=1	major_base=C	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	1764	.	NC_000913	4624391	0	C	G	bias_e_value=3582360	bias_p_value=0.771786	consensus_score=221.2	fisher_strand_p_value=0.405797	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=41/27	major_frequency=9.855e-01	minor_base=T	minor_cov=0/1	new_cov=41/27	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	1765	.	NC_000913	4624400	0	C	T	consensus_score=224.7	frequency=1	major_base=T	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	1766	.	NC_000913	4624430	0	T	C	consensus_score=254.5	frequency=1	major_base=C	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	1767	.	NC_000913	4624487	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=295.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/44	major_frequency=9.888e-01	minor_base=T	minor_cov=0/1	new_cov=44/44	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/45
RA	1768	.	NC_000913	4624517	0	A	G	consensus_score=311.7	frequency=1	major_base=G	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	1769	.	NC_000913	4624586	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=287.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/41	major_frequency=9.880e-01	minor_base=T	minor_cov=0/1	new_cov=41/41	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=41/42
RA	1770	.	NC_000913	4624622	0	C	T	consensus_score=301.4	frequency=1	major_base=T	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	1771	.	NC_000913	4624670	0	C	T	consensus_score=276.7	frequency=1	major_base=T	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	1772	.	NC_000913	4625044	0	A	G	consensus_score=246.1	frequency=1	major_base=G	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	1773	.	NC_000913	4625158	0	A	G	consensus_score=295.7	frequency=1	major_base=G	major_cov=56/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/28
RA	1774	.	NC_000913	4625170	0	C	T	bias_e_value=3130170	bias_p_value=0.674366	consensus_score=306.0	fisher_strand_p_value=0.311111	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=62/27	major_frequency=9.889e-01	minor_base=G	minor_cov=0/1	new_cov=62/27	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/28
RA	1775	.	NC_000913	4625179	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=280.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=61/28	major_frequency=9.889e-01	minor_base=C	minor_cov=1/0	new_cov=61/28	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/28
RA	1776	.	NC_000913	4625242	0	T	C	consensus_score=281.1	frequency=1	major_base=C	major_cov=53/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/27
RA	1777	.	NC_000913	4625248	0	C	T	consensus_score=272.2	frequency=1	major_base=T	major_cov=53/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/26
RA	1778	.	NC_000913	4625377	0	T	C	consensus_score=235.5	frequency=1	major_base=C	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	1779	.	NC_000913	4625533	0	C	T	consensus_score=245.2	frequency=1	major_base=T	major_cov=28/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/45
RA	1780	.	NC_000913	4625546	0	C	T	consensus_score=252.0	frequency=1	major_base=T	major_cov=27/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/48
RA	1781	.	NC_000913	4626042	0	T	C	consensus_score=228.1	frequency=1	major_base=C	major_cov=37/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/31
RA	1782	.	NC_000913	4626245	0	C	T	consensus_score=216.8	frequency=1	major_base=T	major_cov=27/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/40
RA	1783	.	NC_000913	4626247	0	A	G	consensus_score=230.1	frequency=1	major_base=G	major_cov=27/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/40
RA	1784	.	NC_000913	4626391	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=243.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=33/37	major_frequency=9.859e-01	minor_base=T	minor_cov=0/1	new_cov=33/37	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	1785	.	NC_000913	4626487	0	T	C	consensus_score=232.7	frequency=1	major_base=C	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	1786	.	NC_000913	4626521	0	T	C	consensus_score=203.9	frequency=1	major_base=C	major_cov=34/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/24
RA	1787	.	NC_000913	4626526	0	A	G	consensus_score=187.2	frequency=1	major_base=G	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	1788	.	NC_000913	4626565	0	G	T	consensus_score=178.3	frequency=1	major_base=T	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	1789	.	NC_000913	4626568	0	G	A	bias_e_value=3773360	bias_p_value=0.812935	consensus_score=173.7	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/24	major_frequency=9.818e-01	minor_base=G	minor_cov=0/1	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/25
RA	1790	.	NC_000913	4626586	0	T	C	consensus_score=192.9	frequency=1	major_base=C	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	1791	.	NC_000913	4626595	0	T	G	consensus_score=198.7	frequency=1	major_base=G	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	1792	.	NC_000913	4626601	0	G	T	consensus_score=193.9	frequency=1	major_base=T	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	1793	.	NC_000913	4626670	0	C	T	consensus_score=191.1	frequency=1	major_base=T	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	1794	.	NC_000913	4626673	0	G	A	consensus_score=185.2	frequency=1	major_base=A	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	1795	.	NC_000913	4626784	0	C	A	consensus_score=183.4	frequency=1	major_base=A	major_cov=22/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/33
RA	1796	.	NC_000913	4626802	0	T	C	consensus_score=194.1	frequency=1	major_base=C	major_cov=23/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/32
RA	1797	.	NC_000913	4626808	0	A	C	bias_e_value=3572750	bias_p_value=0.769716	consensus_score=185.0	fisher_strand_p_value=0.403509	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=22/34	major_frequency=9.825e-01	minor_base=A	minor_cov=1/0	new_cov=22/34	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=23/34
RA	1798	.	NC_000913	4626820	0	A	G	consensus_score=201.9	frequency=1	major_base=G	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	1799	.	NC_000913	4626838	0	A	G	consensus_score=188.1	frequency=1	major_base=G	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	1800	.	NC_000913	4626839	0	C	T	consensus_score=177.8	frequency=1	major_base=T	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	1801	.	NC_000913	4626886	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=170.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/26	major_frequency=9.808e-01	minor_base=C	minor_cov=1/0	new_cov=25/26	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/26
RA	1802	.	NC_000913	4626889	0	A	G	consensus_score=179.1	frequency=1	major_base=G	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	1803	.	NC_000913	4626943	0	G	C	bias_e_value=3891460	bias_p_value=0.838377	consensus_score=150.5	fisher_strand_p_value=0.488372	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=20/22	major_frequency=9.767e-01	minor_base=A	minor_cov=1/0	new_cov=20/22	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	1804	.	NC_000913	4627027	0	T	C	bias_e_value=3965970	bias_p_value=0.85443	consensus_score=159.4	fisher_strand_p_value=0.511525	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=27/19	major_frequency=9.583e-01	minor_base=A	minor_cov=2/0	new_cov=27/19	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/19
RA	1805	.	NC_000913	4627069	0	C	T	consensus_score=165.7	frequency=1	major_base=T	major_cov=32/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/19
RA	1806	.	NC_000913	4627084	0	G	A	consensus_score=171.1	frequency=1	major_base=A	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	1807	.	NC_000913	4627159	0	C	T	bias_e_value=3274230	bias_p_value=0.705401	consensus_score=206.9	fisher_strand_p_value=0.33871	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/20	major_frequency=9.839e-01	minor_base=G	minor_cov=0/1	new_cov=41/20	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/21
RA	1808	.	NC_000913	4627162	0	T	A	consensus_score=202.8	frequency=1	major_base=A	major_cov=41/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/21
RA	1809	.	NC_000913	4627213	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=236.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=47/25	major_frequency=9.863e-01	minor_base=C	minor_cov=1/0	new_cov=47/25	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/25
RA	1810	.	NC_000913	4627299	0	A	G	bias_e_value=2426080	bias_p_value=0.522677	consensus_score=260.5	fisher_strand_p_value=0.22921	frequency=1	ks_quality_p_value=0.874705	major_base=G	major_cov=43/38	major_frequency=9.759e-01	minor_base=A	minor_cov=0/2	new_cov=43/38	polymorphism_frequency=9.759e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=0/2	total_cov=43/40
RA	1811	.	NC_000913	4627300	0	T	A	bias_e_value=2585700	bias_p_value=0.557065	consensus_score=269.1	fisher_strand_p_value=0.22921	frequency=1	ks_quality_p_value=0.971267	major_base=A	major_cov=43/38	major_frequency=9.759e-01	minor_base=.	minor_cov=0/2	new_cov=43/38	polymorphism_frequency=9.759e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	1812	.	NC_000913	4627377	0	A	G	bias_e_value=2637620	bias_p_value=0.568249	consensus_score=302.6	fisher_strand_p_value=0.230152	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=45/40	major_frequency=9.770e-01	minor_base=T	minor_cov=0/2	new_cov=45/40	polymorphism_frequency=9.770e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	1813	.	NC_000913	4627509	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=287.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=33/53	major_frequency=9.773e-01	minor_base=T	minor_cov=1/1	new_cov=33/53	polymorphism_frequency=9.773e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=34/54
RA	1814	.	NC_000913	4627512	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=286.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/53	major_frequency=9.773e-01	minor_base=G	minor_cov=1/1	new_cov=33/53	polymorphism_frequency=9.773e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=34/54
RA	1815	.	NC_000913	4627518	0	C	G	consensus_score=294.6	frequency=1	major_base=G	major_cov=35/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/53
RA	1816	.	NC_000913	4627539	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=297.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/49	major_frequency=9.885e-01	minor_base=T	minor_cov=0/1	new_cov=37/49	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/50
RA	1817	.	NC_000913	4627593	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=303.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/49	major_frequency=9.890e-01	minor_base=G	minor_cov=0/1	new_cov=41/49	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=41/50
RA	1818	.	NC_000913	4627626	0	T	C	bias_e_value=3681310	bias_p_value=0.793103	consensus_score=301.5	fisher_strand_p_value=0.430233	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=36/49	major_frequency=9.884e-01	minor_base=.	minor_cov=1/0	new_cov=36/49	polymorphism_frequency=9.884e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=37/49
RA	1819	.	NC_000913	4627629	0	C	T	bias_e_value=3700990	bias_p_value=0.797343	consensus_score=286.4	fisher_strand_p_value=0.435294	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/48	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=36/48	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/49
RA	1820	.	NC_000913	4627641	0	C	T	consensus_score=304.4	frequency=1	major_base=T	major_cov=39/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/51
RA	1821	.	NC_000913	4627650	0	T	C	bias_e_value=3654820	bias_p_value=0.787397	consensus_score=294.6	fisher_strand_p_value=0.423529	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=35/49	major_frequency=9.882e-01	minor_base=T	minor_cov=1/0	new_cov=35/49	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=36/49
RA	1822	.	NC_000913	4627653	0	C	T	bias_e_value=3654820	bias_p_value=0.787397	consensus_score=282.9	fisher_strand_p_value=0.423529	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/49	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=35/49	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=36/49
RA	1823	.	NC_000913	4627668	0	G	C	consensus_score=281.0	frequency=1	major_base=C	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	1824	.	NC_000913	4627689	0	T	C	consensus_score=268.7	frequency=1	major_base=C	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	1825	.	NC_000913	4627698	0	G	A	consensus_score=259.3	frequency=1	major_base=A	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	1826	.	NC_000913	4627818	0	A	G	bias_e_value=3911710	bias_p_value=0.842741	consensus_score=296.1	fisher_strand_p_value=0.494514	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=43/43	major_frequency=9.773e-01	minor_base=T	minor_cov=0/2	new_cov=43/43	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	1827	.	NC_000913	4627824	0	C	T	consensus_score=294.5	frequency=1	major_base=T	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	1828	.	NC_000913	4627833	0	T	C	consensus_score=292.5	frequency=1	major_base=C	major_cov=40/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/43
RA	1829	.	NC_000913	4627893	0	G	T	consensus_score=269.0	frequency=1	major_base=T	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	1830	.	NC_000913	4627986	0	C	G	consensus_score=283.8	frequency=1	major_base=G	major_cov=51/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/29
RA	1831	.	NC_000913	4628001	0	T	C	consensus_score=286.8	frequency=1	major_base=C	major_cov=51/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/32
RA	1832	.	NC_000913	4628007	0	G	A	consensus_score=284.5	frequency=1	major_base=A	major_cov=51/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/33
RA	1833	.	NC_000913	4628028	0	C	T	consensus_score=308.6	frequency=1	major_base=T	major_cov=57/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/33
RA	1834	.	NC_000913	4628082	0	C	T	consensus_score=275.2	frequency=1	major_base=T	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	1835	.	NC_000913	4628106	0	C	T	consensus_score=316.5	frequency=1	major_base=T	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	1836	.	NC_000913	4628160	0	T	C	consensus_score=322.0	frequency=1	major_base=C	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	1837	.	NC_000913	4628163	0	C	T	consensus_score=321.2	frequency=1	major_base=T	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	1838	.	NC_000913	4628190	0	T	A	consensus_score=305.9	frequency=1	major_base=A	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	1839	.	NC_000913	4628208	0	G	A	consensus_score=320.7	frequency=1	major_base=A	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	1840	.	NC_000913	4628232	0	A	G	consensus_score=335.5	frequency=1	major_base=G	major_cov=45/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/53
RA	1841	.	NC_000913	4628238	0	C	T	consensus_score=322.4	frequency=1	major_base=T	major_cov=43/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	1842	.	NC_000913	4628241	0	T	C	consensus_score=327.4	frequency=1	major_base=C	major_cov=43/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	1843	.	NC_000913	4628244	0	C	T	consensus_score=323.6	frequency=1	major_base=T	major_cov=43/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	1844	.	NC_000913	4628256	0	C	T	consensus_score=361.7	frequency=1	major_base=T	major_cov=46/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/58
RA	1845	.	NC_000913	4628259	0	T	C	consensus_score=370.2	frequency=1	major_base=C	major_cov=46/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/58
RA	1846	.	NC_000913	4628289	0	G	T	consensus_score=343.8	frequency=1	major_base=T	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	1847	.	NC_000913	4628292	0	A	G	consensus_score=351.2	frequency=1	major_base=G	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	1848	.	NC_000913	4628304	0	G	A	consensus_score=335.2	frequency=1	major_base=A	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	1849	.	NC_000913	4628311	0	C	T	consensus_score=322.2	frequency=1	major_base=T	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	1850	.	NC_000913	4628442	0	C	G	consensus_score=352.2	frequency=1	major_base=G	major_cov=58/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/42
RA	1851	.	NC_000913	4628463	0	T	C	consensus_score=335.5	frequency=1	major_base=C	major_cov=55/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/41
RA	1852	.	NC_000913	4628481	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=330.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=51/43	major_frequency=9.895e-01	minor_base=A	minor_cov=1/0	new_cov=51/43	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/43
RA	1853	.	NC_000913	4628487	0	C	T	consensus_score=309.4	frequency=1	major_base=T	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	1854	.	NC_000913	4628493	0	T	C	consensus_score=303.3	frequency=1	major_base=C	major_cov=46/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	1855	.	NC_000913	4628514	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=313.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=48/43	major_frequency=9.891e-01	minor_base=A	minor_cov=1/0	new_cov=48/43	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/43
RA	1856	.	NC_000913	4628551	0	T	C	bias_e_value=3785330	bias_p_value=0.815514	consensus_score=285.1	fisher_strand_p_value=0.457831	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=45/37	major_frequency=9.880e-01	minor_base=T	minor_cov=0/1	new_cov=45/37	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=45/38
RA	1857	.	NC_000913	4628560	0	T	G	consensus_score=280.5	frequency=1	major_base=G	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	1858	.	NC_000913	4628583	0	G	A	bias_e_value=3840690	bias_p_value=0.82744	consensus_score=288.1	fisher_strand_p_value=0.488636	frequency=1	ks_quality_p_value=0.968885	major_base=A	major_cov=45/42	major_frequency=9.886e-01	minor_base=.	minor_cov=0/1	new_cov=45/42	polymorphism_frequency=9.886e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	1859	.	NC_000913	4628592	0	T	.	bias_e_value=3809390	bias_p_value=0.820698	consensus_score=409.4	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=0.962239	major_base=.	major_cov=45/41	major_frequency=9.885e-01	minor_base=T	minor_cov=0/1	new_cov=45/41	polymorphism_frequency=9.885e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=0/1	total_cov=45/42
RA	1860	.	NC_000913	4628668	0	C	T	consensus_score=291.5	frequency=1	major_base=T	major_cov=41/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/53
RA	1861	.	NC_000913	4628678	0	A	C	consensus_score=304.9	frequency=1	major_base=C	major_cov=35/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/54
RA	1862	.	NC_000913	4628683	0	G	A	consensus_score=308.5	frequency=1	major_base=A	major_cov=35/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/54
RA	1863	.	NC_000913	4628699	0	A	G	consensus_score=306.3	frequency=1	major_base=G	major_cov=35/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/53
RA	1864	.	NC_000913	4628707	0	C	A	consensus_score=292.8	frequency=1	major_base=A	major_cov=33/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/54
RA	1865	.	NC_000913	4628710	0	T	C	consensus_score=299.4	frequency=1	major_base=C	major_cov=33/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/54
RA	1866	.	NC_000913	4628721	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=257.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/53	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=27/53	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=27/55
RA	1867	.	NC_000913	4628778	0	A	G	consensus_score=249.6	frequency=1	major_base=G	major_cov=28/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/44
RA	1868	.	NC_000913	4628779	0	C	G	bias_e_value=2936260	bias_p_value=0.632589	consensus_score=230.5	fisher_strand_p_value=0.276995	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=28/41	major_frequency=9.583e-01	minor_base=T	minor_cov=0/3	new_cov=28/41	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/44
RA	1869	.	NC_000913	4628782	0	T	A	consensus_score=243.6	frequency=1	major_base=A	major_cov=28/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/44
RA	1870	.	NC_000913	4628785	0	T	C	consensus_score=250.1	frequency=1	major_base=C	major_cov=28/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/44
RA	1871	.	NC_000913	4628802	0	G	T	consensus_score=237.5	frequency=1	major_base=T	major_cov=29/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/46
RA	1872	.	NC_000913	4628805	0	G	T	bias_e_value=4640940	bias_p_value=0.999846	consensus_score=242.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.982497	major_base=T	major_cov=29/45	major_frequency=9.867e-01	minor_base=G	minor_cov=0/1	new_cov=29/45	polymorphism_frequency=9.867e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=29/46
RA	1873	.	NC_000913	4628807	0	T	G	bias_e_value=2947690	bias_p_value=0.635052	consensus_score=244.5	fisher_strand_p_value=0.278919	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=29/43	major_frequency=9.600e-01	minor_base=T	minor_cov=0/3	new_cov=29/43	polymorphism_frequency=9.600e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/3	total_cov=29/46
RA	1874	.	NC_000913	4628831	0	G	A	consensus_score=240.7	frequency=1	major_base=A	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	1875	.	NC_000913	4628897	0	C	T	consensus_score=208.9	frequency=1	major_base=T	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	1876	.	NC_000913	4628939	0	G	A	consensus_score=187.4	frequency=1	major_base=A	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	1877	.	NC_000913	4628984	0	A	G	consensus_score=169.1	frequency=1	major_base=G	major_cov=22/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/27
RA	1878	.	NC_000913	4628990	0	A	G	consensus_score=179.4	frequency=1	major_base=G	major_cov=26/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/25
RA	1879	.	NC_000913	4629188	0	G	A	bias_e_value=3402090	bias_p_value=0.732948	consensus_score=206.5	fisher_strand_p_value=0.365079	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/22	major_frequency=9.841e-01	minor_base=G	minor_cov=0/1	new_cov=40/22	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=40/23
RA	1880	.	NC_000913	4629281	0	G	A	consensus_score=262.5	frequency=1	major_base=A	major_cov=49/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/28
RA	1881	.	NC_000913	4629356	0	C	T	consensus_score=255.2	frequency=1	major_base=T	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	1882	.	NC_000913	4629377	0	C	T	consensus_score=255.6	frequency=1	major_base=T	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	1883	.	NC_000913	4629446	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=305.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=48/44	major_frequency=9.892e-01	minor_base=A	minor_cov=1/0	new_cov=48/44	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/44
RA	1884	.	NC_000913	4629473	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=289.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/45	major_frequency=9.891e-01	minor_base=G	minor_cov=0/1	new_cov=46/45	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	1885	.	NC_000913	4629476	0	T	C	consensus_score=295.6	frequency=1	major_base=C	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	1886	.	NC_000913	4629515	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=296.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=39/51	major_frequency=9.890e-01	minor_base=T	minor_cov=0/1	new_cov=39/51	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/52
RA	1887	.	NC_000913	4629521	0	G	A	consensus_score=303.0	frequency=1	major_base=A	major_cov=37/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/54
RA	1888	.	NC_000913	4629524	0	A	G	bias_e_value=1955050	bias_p_value=0.421198	consensus_score=278.4	fisher_strand_p_value=0.143039	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/50	major_frequency=9.560e-01	minor_base=T	minor_cov=0/4	new_cov=37/50	polymorphism_frequency=9.560e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/54
RA	1889	.	NC_000913	4629635	0	T	C	bias_e_value=4641200	bias_p_value=0.999902	consensus_score=290.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986042	major_base=C	major_cov=36/47	major_frequency=9.881e-01	minor_base=A	minor_cov=0/1	new_cov=36/47	polymorphism_frequency=9.881e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	1890	.	NC_000913	4629647	0	C	T	consensus_score=283.8	frequency=1	major_base=T	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	1891	.	NC_000913	4629674	0	A	G	consensus_score=293.2	frequency=1	major_base=G	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	1892	.	NC_000913	4629686	0	A	T	consensus_score=290.5	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	1893	.	NC_000913	4629689	0	T	C	consensus_score=269.7	frequency=1	major_base=C	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	1894	.	NC_000913	4629701	0	T	C	consensus_score=303.0	frequency=1	major_base=C	major_cov=46/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/41
RA	1895	.	NC_000913	4629716	0	A	G	consensus_score=311.4	frequency=1	major_base=G	major_cov=49/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/42
RA	1896	.	NC_000913	4629797	0	A	G	bias_e_value=3680280	bias_p_value=0.792882	consensus_score=282.0	fisher_strand_p_value=0.432099	frequency=1	ks_quality_p_value=0.995074	major_base=G	major_cov=46/34	major_frequency=9.877e-01	minor_base=C	minor_cov=0/1	new_cov=46/34	polymorphism_frequency=9.877e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	1897	.	NC_000913	4629887	0	A	C	consensus_score=289.6	frequency=1	major_base=C	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	1898	.	NC_000913	4629896	0	T	C	consensus_score=288.8	frequency=1	major_base=C	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	1899	.	NC_000913	4630022	0	T	C	consensus_score=245.6	frequency=1	major_base=C	major_cov=26/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/45
RA	1900	.	NC_000913	4630106	0	A	G	consensus_score=256.6	frequency=1	major_base=G	major_cov=31/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/44
RA	1901	.	NC_000913	4630238	0	T	A	consensus_score=275.1	frequency=1	major_base=A	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	1902	.	NC_000913	4630304	0	A	G	bias_e_value=3409500	bias_p_value=0.734544	consensus_score=302.3	fisher_strand_p_value=0.366667	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=57/32	major_frequency=9.889e-01	minor_base=T	minor_cov=0/1	new_cov=57/32	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/33
RA	1903	.	NC_000913	4630385	0	G	A	consensus_score=327.8	frequency=1	major_base=A	major_cov=62/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/37
RA	1904	.	NC_000913	4630400	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=321.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=61/35	major_frequency=9.897e-01	minor_base=A	minor_cov=1/0	new_cov=61/35	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=62/35
RA	1905	.	NC_000913	4630553	0	A	G	consensus_score=401.9	frequency=1	major_base=G	major_cov=64/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/51
RA	1906	.	NC_000913	4630602	0	C	T	consensus_score=400.5	frequency=1	major_base=T	major_cov=63/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/58
RA	1907	.	NC_000913	4630603	0	C	T	consensus_score=407.5	frequency=1	major_base=T	major_cov=63/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/58
RA	1908	.	NC_000913	4630615	0	C	T	bias_e_value=3759660	bias_p_value=0.809982	consensus_score=407.7	fisher_strand_p_value=0.45082	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=67/54	major_frequency=9.918e-01	minor_base=G	minor_cov=0/1	new_cov=67/54	polymorphism_frequency=9.918e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/55
RA	1909	.	NC_000913	4630837	0	T	C	consensus_score=400.6	frequency=1	major_base=C	major_cov=57/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/59
RA	1910	.	NC_000913	4630912	0	G	A	consensus_score=373.9	frequency=1	major_base=A	major_cov=52/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/60
RA	1911	.	NC_000913	4630921	0	G	A	consensus_score=384.9	frequency=1	major_base=A	major_cov=53/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/60
RA	1912	.	NC_000913	4630945	0	C	T	consensus_score=384.0	frequency=1	major_base=T	major_cov=54/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/58
RA	1913	.	NC_000913	4630960	0	T	C	bias_e_value=2693780	bias_p_value=0.580349	consensus_score=354.3	fisher_strand_p_value=0.238491	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=51/55	major_frequency=9.815e-01	minor_base=A	minor_cov=2/0	new_cov=51/55	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/55
RA	1914	.	NC_000913	4630984	0	G	T	bias_e_value=3898130	bias_p_value=0.839816	consensus_score=351.5	fisher_strand_p_value=0.490385	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/53	major_frequency=9.904e-01	minor_base=C	minor_cov=1/0	new_cov=50/53	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	1915	.	NC_000913	4631146	0	G	A	bias_e_value=3317230	bias_p_value=0.714665	consensus_score=308.3	fisher_strand_p_value=0.347368	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/62	major_frequency=9.895e-01	minor_base=C	minor_cov=1/0	new_cov=32/62	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/62
RA	1916	.	NC_000913	4631245	0	C	T	consensus_score=263.2	frequency=1	major_base=T	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	1917	.	NC_000913	4631323	0	A	T	bias_e_value=3741510	bias_p_value=0.806073	consensus_score=246.1	fisher_strand_p_value=0.445946	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/41	major_frequency=9.865e-01	minor_base=C	minor_cov=1/0	new_cov=32/41	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	1918	.	NC_000913	4634882	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=300.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/58	major_frequency=9.894e-01	minor_base=G	minor_cov=0/1	new_cov=35/58	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/59
RA	1919	.	NC_000913	4635658	0	T	C	consensus_score=352.8	frequency=1	major_base=C	major_cov=36/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/64
RA	1920	.	NC_000913	4635706	0	C	A	consensus_score=347.1	frequency=1	major_base=A	major_cov=44/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/58
RA	1921	.	NC_000913	4635757	0	C	T	consensus_score=303.1	frequency=1	major_base=T	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	1922	.	NC_000913	4635889	0	T	C	consensus_score=255.8	frequency=1	major_base=C	major_cov=48/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/26
RA	1923	.	NC_000913	4636139	0	A	C	bias_e_value=3894740	bias_p_value=0.839086	consensus_score=322.9	fisher_strand_p_value=0.489362	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=45/48	major_frequency=9.894e-01	minor_base=A	minor_cov=1/0	new_cov=45/48	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=46/48
RA	1924	.	NC_000913	4636146	0	T	C	consensus_score=309.3	frequency=1	major_base=C	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	1925	.	NC_000913	4636147	0	A	T	consensus_score=286.3	frequency=1	major_base=T	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	1926	.	NC_000913	4636175	0	C	T	consensus_score=308.1	frequency=1	major_base=T	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	1927	.	NC_000913	4636180	0	G	T	consensus_score=301.1	frequency=1	major_base=T	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	1928	.	NC_000913	4636186	0	T	C	consensus_score=304.2	frequency=1	major_base=C	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	1929	.	NC_000913	4636201	0	G	A	consensus_score=305.2	frequency=1	major_base=A	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	1930	.	NC_000913	4636309	0	C	T	consensus_score=260.1	frequency=1	major_base=T	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	1931	.	NC_000913	4636385	0	A	T	consensus_score=233.6	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	1932	.	NC_000913	4636411	0	A	T	consensus_score=247.8	frequency=1	major_base=T	major_cov=39/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/40
RA	1933	.	NC_000913	4636466	0	G	A	consensus_score=255.1	frequency=1	major_base=A	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	1934	.	NC_000913	4636474	0	T	G	consensus_score=269.4	frequency=1	major_base=G	major_cov=31/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/47
RA	1935	.	NC_000913	4636493	0	T	C	consensus_score=277.6	frequency=1	major_base=C	major_cov=33/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/47
RA	1936	.	NC_000913	4636513	0	A	G	consensus_score=258.5	frequency=1	major_base=G	major_cov=29/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/46
RA	1937	.	NC_000913	4636516	0	G	A	bias_e_value=3500150	bias_p_value=0.754074	consensus_score=244.5	fisher_strand_p_value=0.386667	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/46	major_frequency=9.867e-01	minor_base=C	minor_cov=1/0	new_cov=28/46	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/46
RA	1938	.	NC_000913	4636543	0	G	A	consensus_score=250.7	frequency=1	major_base=A	major_cov=24/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/50
RA	1939	.	NC_000913	4636555	0	A	G	consensus_score=254.9	frequency=1	major_base=G	major_cov=25/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/49
RA	1940	.	NC_000913	4636591	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=245.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/42	major_frequency=9.867e-01	minor_base=C	minor_cov=0/1	new_cov=32/42	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=32/43
RA	1941	.	NC_000913	4636610	0	C	T	consensus_score=260.5	frequency=1	major_base=T	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	1942	.	NC_000913	4636717	0	T	C	bias_e_value=3720850	bias_p_value=0.801622	consensus_score=279.9	fisher_strand_p_value=0.440476	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=47/36	major_frequency=9.881e-01	minor_base=T	minor_cov=0/1	new_cov=47/36	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/37
RA	1943	.	NC_000913	4636749	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=286.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=48/35	major_frequency=9.881e-01	minor_base=A	minor_cov=1/0	new_cov=48/35	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/35
RA	1944	.	NC_000913	4636767	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=275.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/31	major_frequency=9.878e-01	minor_base=C	minor_cov=1/0	new_cov=50/31	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/31
RA	1945	.	NC_000913	4636821	0	G	A	consensus_score=302.5	frequency=1	major_base=A	major_cov=52/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/38
RA	1946	.	NC_000913	4636827	0	C	T	consensus_score=300.4	frequency=1	major_base=T	major_cov=52/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/36
RA	1947	.	NC_000913	4636993	0	G	T	consensus_score=218.1	frequency=1	major_base=T	major_cov=27/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/39
RA	1948	.	NC_000913	4637001	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=211.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/39	major_frequency=9.848e-01	minor_base=G	minor_cov=0/1	new_cov=26/39	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/40
RA	1949	.	NC_000913	4637037	0	A	G	consensus_score=210.6	frequency=1	major_base=G	major_cov=24/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/39
RA	1950	.	NC_000913	4637133	0	T	G	consensus_score=223.2	frequency=1	major_base=G	major_cov=26/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/39
RA	1951	.	NC_000913	4637151	0	A	G	consensus_score=216.1	frequency=1	major_base=G	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	1952	.	NC_000913	4637269	0	T	C	consensus_score=224.1	frequency=1	major_base=C	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	1953	.	NC_000913	4637322	0	T	C	consensus_score=195.0	frequency=1	major_base=C	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	1954	.	NC_000913	4637346	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=188.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/25	major_frequency=9.661e-01	minor_base=A	minor_cov=1/1	new_cov=32/25	polymorphism_frequency=9.661e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	1955	.	NC_000913	4637379	0	C	T	consensus_score=177.1	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	1956	.	NC_000913	4637382	0	C	T	consensus_score=181.5	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	1957	.	NC_000913	4637385	0	T	A	consensus_score=178.7	frequency=1	major_base=A	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	1958	.	NC_000913	4637391	0	T	C	consensus_score=186.1	frequency=1	major_base=C	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	1959	.	NC_000913	4637409	0	A	G	consensus_score=173.5	frequency=1	major_base=G	major_cov=30/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/21
RA	1960	.	NC_000913	4637412	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=162.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/21	major_frequency=9.804e-01	minor_base=C	minor_cov=1/0	new_cov=29/21	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/21
RA	1961	.	NC_000913	4637478	0	C	T	consensus_score=212.8	frequency=1	major_base=T	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	1962	.	NC_000913	4637481	0	A	G	consensus_score=225.2	frequency=1	major_base=G	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	1963	.	NC_000913	4637487	0	T	C	consensus_score=230.5	frequency=1	major_base=C	major_cov=41/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/27
RA	1964	.	NC_000913	4637523	0	A	C	consensus_score=219.9	frequency=1	major_base=C	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	1965	.	NC_000913	4637553	0	G	A	consensus_score=213.5	frequency=1	major_base=A	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	1966	.	NC_000913	4637577	0	T	C	consensus_score=260.6	frequency=1	major_base=C	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	1967	.	NC_000913	4637675	0	C	T	consensus_score=241.3	frequency=1	major_base=T	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	1968	.	NC_000913	4637697	0	C	T	consensus_score=228.8	frequency=1	major_base=T	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	1969	.	NC_000913	4637742	0	A	C	bias_e_value=2409010	bias_p_value=0.518998	consensus_score=232.0	fisher_strand_p_value=0.19821	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/38	major_frequency=9.710e-01	minor_base=A	minor_cov=2/0	new_cov=29/38	polymorphism_frequency=9.710e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=31/38
RA	1970	.	NC_000913	4637751	0	G	A	consensus_score=220.9	frequency=1	major_base=A	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	1971	.	NC_000913	4637759	0	C	T	consensus_score=206.5	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	1972	.	NC_000913	4637766	0	C	T	consensus_score=186.7	frequency=1	major_base=T	major_cov=23/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/36
RA	1973	.	NC_000913	4637775	0	C	T	consensus_score=190.3	frequency=1	major_base=T	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	1974	.	NC_000913	4637814	0	A	G	consensus_score=190.5	frequency=1	major_base=G	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	1975	.	NC_000913	4637857	0	T	C	consensus_score=188.4	frequency=1	major_base=C	major_cov=20/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/35
RA	1976	.	NC_000913	4637862	0	C	A	bias_e_value=1687710	bias_p_value=0.3636	consensus_score=195.4	fisher_strand_p_value=0.114943	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/38	major_frequency=9.655e-01	minor_base=C	minor_cov=2/0	new_cov=18/38	polymorphism_frequency=9.655e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=2/0	total_cov=20/38
RA	1977	.	NC_000913	4637896	0	A	G	bias_e_value=3572750	bias_p_value=0.769716	consensus_score=193.4	fisher_strand_p_value=0.403509	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=22/34	major_frequency=9.825e-01	minor_base=A	minor_cov=1/0	new_cov=22/34	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=23/34
RA	1978	.	NC_000913	4637898	0	G	C	bias_e_value=3472970	bias_p_value=0.748217	consensus_score=168.4	fisher_strand_p_value=0.392857	frequency=1	ks_quality_p_value=0.968683	major_base=C	major_cov=21/34	major_frequency=9.821e-01	minor_base=A	minor_cov=1/0	new_cov=21/34	polymorphism_frequency=9.821e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	1979	.	NC_000913	4637943	0	T	G	bias_e_value=3905940	bias_p_value=0.841498	consensus_score=226.5	fisher_strand_p_value=0.492754	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=35/33	major_frequency=9.855e-01	minor_base=T	minor_cov=0/1	new_cov=35/33	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=35/34
RA	1980	.	NC_000913	4637976	0	T	G	consensus_score=238.4	frequency=1	major_base=G	major_cov=41/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/32
RA	1981	.	NC_000913	4638142	0	T	C	consensus_score=310.7	frequency=1	major_base=C	major_cov=56/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/35
RA	1982	.	NC_000913	4638210	0	T	C	consensus_score=313.0	frequency=1	major_base=C	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	1983	.	NC_000913	4638212	0	G	C	bias_e_value=1777620	bias_p_value=0.382971	consensus_score=291.1	fisher_strand_p_value=0.124059	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=46/41	major_frequency=9.560e-01	minor_base=A	minor_cov=4/0	new_cov=46/41	polymorphism_frequency=9.560e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	1984	.	NC_000913	4638214	0	C	T	bias_e_value=3758660	bias_p_value=0.809767	consensus_score=300.1	fisher_strand_p_value=0.450549	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/40	major_frequency=9.890e-01	minor_base=G	minor_cov=0/1	new_cov=50/40	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	1985	.	NC_000913	4638264	0	G	A	consensus_score=341.1	frequency=1	major_base=A	major_cov=53/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/50
RA	1986	.	NC_000913	4638282	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=349.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=52/49	major_frequency=9.902e-01	minor_base=A	minor_cov=1/0	new_cov=52/49	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	1987	.	NC_000913	4638354	0	C	T	consensus_score=352.4	frequency=1	major_base=T	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	1988	.	NC_000913	4638532	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=269.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=34/43	major_frequency=9.872e-01	minor_base=T	minor_cov=0/1	new_cov=34/43	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=34/44
RA	1989	.	NC_000913	4638567	0	A	G	consensus_score=283.0	frequency=1	major_base=G	major_cov=36/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/47
RA	1990	.	NC_000913	4638587	0	C	T	consensus_score=266.9	frequency=1	major_base=T	major_cov=34/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/47
RA	1991	.	NC_000913	4638600	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=260.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=35/44	major_frequency=9.875e-01	minor_base=T	minor_cov=0/1	new_cov=35/44	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	1992	.	NC_000913	4638735	0	T	C	consensus_score=258.9	frequency=1	major_base=C	major_cov=60/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/20
RA	1993	.	NC_000913	4638818	0	G	C	consensus_score=258.4	frequency=1	major_base=C	major_cov=48/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/25
RA	1994	.	NC_000913	4638883	0	C	T	consensus_score=286.8	frequency=1	major_base=T	major_cov=51/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/33
RA	1995	.	NC_000913	4638885	0	A	G	bias_e_value=3527220	bias_p_value=0.759907	consensus_score=287.0	fisher_strand_p_value=0.392857	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=51/32	major_frequency=9.881e-01	minor_base=A	minor_cov=0/1	new_cov=51/32	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/33
RA	1996	.	NC_000913	4638927	0	C	A	bias_e_value=2234740	bias_p_value=0.481454	consensus_score=244.1	fisher_strand_p_value=0.175824	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/31	major_frequency=9.744e-01	minor_base=G	minor_cov=0/2	new_cov=45/31	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/33
RA	1997	.	NC_000913	4639005	0	G	C	bias_e_value=2059420	bias_p_value=0.443682	consensus_score=250.0	fisher_strand_p_value=0.154845	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/47	major_frequency=9.744e-01	minor_base=A	minor_cov=2/0	new_cov=29/47	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/48
RA	1998	.	NC_000913	4639023	0	A	G	consensus_score=271.3	frequency=1	major_base=G	major_cov=26/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/51
RA	1999	.	NC_000913	4639053	0	T	G	bias_e_value=4078530	bias_p_value=0.878681	consensus_score=265.4	fisher_strand_p_value=0.549784	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=26/50	major_frequency=9.744e-01	minor_base=T	minor_cov=0/2	new_cov=26/50	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=26/52
RA	2000	.	NC_000913	4639217	0	C	T	bias_e_value=3771620	bias_p_value=0.812561	consensus_score=285.6	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.998956	major_base=T	major_cov=39/48	major_frequency=9.886e-01	minor_base=G	minor_cov=1/0	new_cov=39/48	polymorphism_frequency=9.886e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	2001	.	NC_000913	4639261	0	A	T	consensus_score=262.1	frequency=1	major_base=T	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	2002	.	NC_000913	4639284	0	A	G	bias_e_value=4614600	bias_p_value=0.994173	consensus_score=262.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.894004	major_base=G	major_cov=46/38	major_frequency=9.882e-01	minor_base=A	minor_cov=1/0	new_cov=46/38	polymorphism_frequency=9.882e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=47/39
RA	2003	.	NC_000913	4639299	0	T	C	consensus_score=311.3	frequency=1	major_base=C	major_cov=48/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/43
RA	2004	.	NC_000913	4639303	0	T	C	consensus_score=322.1	frequency=1	major_base=C	major_cov=48/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/43
RA	2005	.	NC_000913	4639440	0	C	T	consensus_score=391.1	frequency=1	major_base=T	major_cov=76/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/38
RA	2006	.	NC_000913	4639502	0	C	T	consensus_score=405.6	frequency=1	major_base=T	major_cov=70/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/48
RA	2007	.	NC_000913	4639510	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=423.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=67/53	major_frequency=9.917e-01	minor_base=G	minor_cov=1/0	new_cov=67/53	polymorphism_frequency=9.917e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/0	total_cov=68/53
RA	2008	.	NC_000913	4639512	0	G	A	bias_e_value=4640410	bias_p_value=0.999733	consensus_score=381.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.976991	major_base=A	major_cov=67/53	major_frequency=9.917e-01	minor_base=.	minor_cov=1/0	new_cov=67/53	polymorphism_frequency=9.917e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/0	total_cov=68/53
RA	2009	.	NC_000913	4639608	0	G	A	bias_e_value=3885970	bias_p_value=0.837195	consensus_score=356.8	fisher_strand_p_value=0.486726	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/58	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=54/58	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/58
RA	2010	.	NC_000913	4639632	0	A	G	consensus_score=329.6	frequency=1	major_base=G	major_cov=42/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/57
RA	2011	.	NC_000913	4639719	0	C	T	bias_e_value=2877850	bias_p_value=0.620007	consensus_score=329.9	fisher_strand_p_value=0.267327	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/74	major_frequency=9.901e-01	minor_base=G	minor_cov=1/0	new_cov=26/74	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/74
RA	2012	.	NC_000913	4639764	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=305.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/67	major_frequency=9.891e-01	minor_base=G	minor_cov=0/1	new_cov=24/67	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=24/68
RA	2013	.	NC_000913	4639956	0	T	C	consensus_score=263.6	frequency=1	major_base=C	major_cov=49/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/29
RA	2014	.	NC_000913	4640785	0	C	T	consensus_score=490.6	frequency=1	major_base=T	major_cov=68/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/75
RA	2015	.	NC_000913	4640864	0	A	G	consensus_score=457.0	frequency=1	major_base=G	major_cov=55/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/75
RA	2016	.	NC_000913	4640908	0	G	T	consensus_score=415.4	frequency=1	major_base=T	major_cov=46/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/78
RA	2017	.	NC_000913	4640924	0	A	G	bias_e_value=4053300	bias_p_value=0.873245	consensus_score=396.6	fisher_strand_p_value=0.540819	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=41/74	major_frequency=9.829e-01	minor_base=T	minor_cov=0/2	new_cov=41/74	polymorphism_frequency=9.829e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=42/76
RA	2018	.	NC_000913	4641022	0	G	T	bias_e_value=3247010	bias_p_value=0.699537	consensus_score=321.3	fisher_strand_p_value=0.333333	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/64	major_frequency=9.896e-01	minor_base=C	minor_cov=1/0	new_cov=31/64	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/64
RA	2019	.	NC_000913	4641031	0	T	A	consensus_score=318.2	frequency=1	major_base=A	major_cov=31/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/63
RA	2020	.	NC_000913	4641131	0	T	C	consensus_score=250.8	frequency=1	major_base=C	major_cov=32/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/41
RA	2021	.	NC_000913	4641208	0	C	T	consensus_score=236.2	frequency=1	major_base=T	major_cov=47/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/23
RA	2022	.	NC_000913	4641217	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=228.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/22	major_frequency=9.861e-01	minor_base=C	minor_cov=1/0	new_cov=49/22	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/22
RA	2023	.	NC_000913	4641226	0	G	A	consensus_score=229.7	frequency=1	major_base=A	major_cov=49/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/19
RA	2024	.	NC_000913	4641296	0	T	C	consensus_score=281.0	frequency=1	major_base=C	major_cov=50/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/30
RA	2025	.	NC_000913	4641352	0	G	A	consensus_score=317.2	frequency=1	major_base=A	major_cov=65/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/30
RA	2026	.	NC_000913	4641382	0	G	A	consensus_score=319.0	frequency=1	major_base=A	major_cov=57/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/37
RA	2027	.	NC_000913	4641428	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=399.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=76/45	major_frequency=9.918e-01	minor_base=G	minor_cov=1/0	new_cov=76/45	polymorphism_frequency=9.918e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=77/45
RA	2028	.	NC_000913	4641439	0	T	C	bias_e_value=4641590	bias_p_value=0.999987	consensus_score=403.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994886	major_base=C	major_cov=73/45	major_frequency=9.916e-01	minor_base=.	minor_cov=1/0	new_cov=73/45	polymorphism_frequency=9.916e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=74/45
RA	2029	.	NC_000913	4641440	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=388.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998719	major_base=A	major_cov=73/45	major_frequency=9.916e-01	minor_base=.	minor_cov=1/0	new_cov=73/45	polymorphism_frequency=9.916e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=74/45
RA	2030	.	NC_000913	4641483	0	C	T	consensus_score=379.0	frequency=1	major_base=T	major_cov=65/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/45
RA	2031	.	NC_000913	4641488	0	A	G	consensus_score=400.2	frequency=1	major_base=G	major_cov=66/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/47
RA	2032	.	NC_000913	4641544	0	A	G	consensus_score=442.5	frequency=1	major_base=G	major_cov=79/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/48
MC	2033	.	NC_000913	255892	274932	0	977	left_inside_cov=0	left_outside_cov=110	right_inside_cov=24	right_outside_cov=25
MC	2034	.	NC_000913	574843	579183	947	0	left_inside_cov=22	left_outside_cov=26	right_inside_cov=0	right_outside_cov=123
MC	2035	.	NC_000913	1411925	1434984	0	0	left_inside_cov=0	left_outside_cov=68	right_inside_cov=9	right_outside_cov=77
MC	2036	.	NC_000913	1978503	1979278	773	0	left_inside_cov=14	left_outside_cov=105	right_inside_cov=3	right_outside_cov=90
MC	2037	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=69	right_inside_cov=1	right_outside_cov=70
MC	2038	.	NC_000913	3130361	3131468	984	0	left_inside_cov=24	left_outside_cov=25	right_inside_cov=0	right_outside_cov=86
MC	2039	.	NC_000913	3423806	3424429	426	191	left_inside_cov=24	left_outside_cov=25	right_inside_cov=24	right_outside_cov=25
MC	2040	.	NC_000913	3635127	3652997	0	966	left_inside_cov=0	left_outside_cov=124	right_inside_cov=24	right_outside_cov=25
MC	2041	.	NC_000913	3762512	3765109	1562	1029	left_inside_cov=22	left_outside_cov=26	right_inside_cov=24	right_outside_cov=25
MC	2042	.	NC_000913	4498182	4499517	1328	0	left_inside_cov=0	left_outside_cov=128	right_inside_cov=2	right_outside_cov=130
MC	2043	.	NC_000913	4507459	4508695	0	0	left_inside_cov=0	left_outside_cov=96	right_inside_cov=23	right_outside_cov=26
MC	2044	.	NC_000913	4519240	4525971	0	0	left_inside_cov=0	left_outside_cov=101	right_inside_cov=0	right_outside_cov=108
MC	2045	.	NC_000913	4569765	4591616	0	0	left_inside_cov=0	left_outside_cov=96	right_inside_cov=22	right_outside_cov=25
MC	2046	.	NC_000913	4620828	4620870	0	0	left_inside_cov=0	left_outside_cov=62	right_inside_cov=0	right_outside_cov=63
MC	2047	.	NC_000913	4621588	4623193	0	0	left_inside_cov=23	left_outside_cov=26	right_inside_cov=24	right_outside_cov=25
JC	2048	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=70	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=295	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=297	max_left_minus=297	max_left_plus=243	max_min_left=147	max_min_left_minus=147	max_min_left_plus=121	max_min_right=145	max_min_right_minus=145	max_min_right_plus=134	max_pos_hash_score=590	max_right=299	max_right_minus=287	max_right_plus=299	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.37	new_junction_read_count=117	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=110
JC	2049	.	NC_000913	19796	1	NC_000913	362212	-1	0	alignment_overlap=0	coverage_minus=54	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__19796__1__NC_000913__362212__-1__0____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=261	max_min_left=147	max_min_left_minus=139	max_min_left_plus=147	max_min_right=139	max_min_right_minus=139	max_min_right_plus=138	max_pos_hash_score=590	max_right=293	max_right_minus=293	max_right_plus=270	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=92
JC	2050	.	NC_000913	20703	-1	NC_000913	20704	1	-14	alignment_overlap=-14	coverage_minus=30	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=281	key=NC_000913__20703__-1__NC_000913__20704__1__-14__GCAAGAACCTGCAA__300__300__0__0	max_left=140	max_left_minus=138	max_left_plus=140	max_min_left=139	max_min_left_minus=138	max_min_left_plus=139	max_min_right=140	max_min_right_minus=67	max_min_right_plus=140	max_pos_hash_score=562	max_right=284	max_right_minus=284	max_right_plus=274	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.85	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68	unique_read_sequence=GCAAGAACCTGCAA
JC	2051	.	NC_000913	173932	-1	NC_000913	174389	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.939e-02	junction_possible_overlap_registers=284	key=NC_000913__173932__-1__NC_000913__174378__1__11____300__300__0__0	max_left=87	max_left_minus=87	max_left_plus=29	max_min_left=34	max_min_left_minus=34	max_min_left_plus=29	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_pos_hash_score=568	max_right=260	max_right_minus=255	max_right_plus=260	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=6.939e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=11	side_1_possible_overlap_registers=295	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=5
JC	2052	.	NC_000913	255891	-1	NC_000913	273955	1	0	alignment_overlap=0	coverage_minus=62	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__255891__-1__NC_000913__273955__1__0____300__300__0__1	max_left=292	max_left_minus=292	max_left_plus=259	max_min_left=143	max_min_left_minus=143	max_min_left_plus=143	max_min_right=146	max_min_right_minus=135	max_min_right_plus=146	max_pos_hash_score=590	max_right=294	max_right_minus=272	max_right_plus=294	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.29	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=108
JC	2053	.	NC_000913	258675	-1	NC_000913	362204	1	0	alignment_overlap=0	coverage_minus=47	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__258675__-1__NC_000913__362204__1__0____300__300__1__0	max_left=293	max_left_minus=278	max_left_plus=293	max_min_left=147	max_min_left_minus=147	max_min_left_plus=145	max_min_right=149	max_min_right_minus=148	max_min_right_plus=149	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=296	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=83
JC	2054	.	NC_000913	273955	1	NC_000913	820914	1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__273955__1__NC_000913__820914__1__0____300__300__1__0	max_left=294	max_left_minus=283	max_left_plus=294	max_min_left=142	max_min_left_minus=141	max_min_left_plus=142	max_min_right=140	max_min_right_minus=135	max_min_right_plus=140	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=282	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=92
JC	2055	.	NC_000913	275149	-1	NC_000913	579184	1	0	alignment_overlap=0	coverage_minus=71	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__275149__-1__NC_000913__579184__1__0____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=293	max_min_left=136	max_min_left_minus=132	max_min_left_plus=136	max_min_right=149	max_min_right_minus=149	max_min_right_plus=104	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=289	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.43	new_junction_read_count=122	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=121
JC	2056	.	NC_000913	275149	-1	NC_000913	820917	-1	0	alignment_overlap=1	coverage_minus=58	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__275149__-1__NC_000913__820918__-1__1____300__300__1__0	max_left=287	max_left_minus=287	max_left_plus=284	max_min_left=137	max_min_left_minus=120	max_min_left_plus=137	max_min_right=139	max_min_right_minus=139	max_min_right_plus=135	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=276	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	2057	.	NC_000913	290634	1	NC_000913	1105699	1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__290634__1__NC_000913__1105699__1__0____300__300__1__0	max_left=298	max_left_minus=293	max_left_plus=298	max_min_left=149	max_min_left_minus=139	max_min_left_plus=149	max_min_right=139	max_min_right_minus=139	max_min_right_plus=115	max_pos_hash_score=590	max_right=295	max_right_minus=291	max_right_plus=295	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.95	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=78
JC	2058	.	NC_000913	291401	-1	NC_000913	1105707	-1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__291401__-1__NC_000913__1105707__-1__0____300__300__1__0	max_left=294	max_left_minus=284	max_left_plus=294	max_min_left=148	max_min_left_minus=148	max_min_left_plus=146	max_min_right=147	max_min_right_minus=144	max_min_right_plus=147	max_pos_hash_score=590	max_right=291	max_right_minus=291	max_right_plus=282	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.88	new_junction_read_count=75	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	2059	.	NC_000913	293207	1	NC_000913	381260	1	0	alignment_overlap=1	coverage_minus=49	coverage_plus=79	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__293206__1__NC_000913__381260__1__1____300__300__0__1	max_left=297	max_left_minus=295	max_left_plus=297	max_min_left=149	max_min_left_minus=149	max_min_left_plus=142	max_min_right=146	max_min_right_minus=121	max_min_right_plus=146	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=296	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.56	new_junction_read_count=133	polymorphism_frequency=9.924e-01	pos_hash_score=76	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=128
JC	2060	.	NC_000913	293211	-1	NC_000913	382590	-1	0	alignment_overlap=1	coverage_minus=65	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__293212__-1__NC_000913__382590__-1__1____300__300__0__1	max_left=291	max_left_minus=291	max_left_plus=281	max_min_left=148	max_min_left_minus=148	max_min_left_plus=140	max_min_right=149	max_min_right_minus=149	max_min_right_plus=141	max_pos_hash_score=588	max_right=293	max_right_minus=278	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=108	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=107
JC	2061	.	NC_000913	497868	1	NC_000913	497873	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.661e-02	junction_possible_overlap_registers=291	key=NC_000913__497868__1__NC_000913__497877__-1__4____300__300__0__0	max_left=291	max_left_minus=201	max_left_plus=291	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=107	max_min_right_minus=95	max_min_right_plus=107	max_pos_hash_score=582	max_right=107	max_right_minus=95	max_right_plus=107	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.661e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=4	side_1_possible_overlap_registers=295	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=3
JC	2062	.	NC_000913	696469	-1	NC_000913	696802	1	-6	alignment_overlap=-6	coverage_minus=7	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=2.630e-01	junction_possible_overlap_registers=289	key=NC_000913__696469__-1__NC_000913__696802__1__-6__TAGAAT__300__300__0__0	max_left=293	max_left_minus=286	max_left_plus=293	max_min_left=101	max_min_left_minus=0	max_min_left_plus=101	max_min_right=138	max_min_right_minus=138	max_min_right_plus=136	max_pos_hash_score=578	max_right=193	max_right_minus=138	max_right_plus=193	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.21	new_junction_read_count=18	polymorphism_frequency=2.630e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=16	unique_read_sequence=TAGAAT
JC	2063	.	NC_000913	696578	-1	NC_000913	696902	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.189e-01	junction_possible_overlap_registers=285	key=NC_000913__696578__-1__NC_000913__696892__1__10____300__300__0__0	max_left=133	max_left_minus=133	max_left_plus=89	max_min_left=133	max_min_left_minus=133	max_min_left_plus=89	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=210	max_right_minus=188	max_right_plus=210	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=1.189e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=10	side_1_possible_overlap_registers=295	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=7
JC	2064	.	NC_000913	704168	-1	NC_000913	704685	1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.986e-02	junction_possible_overlap_registers=283	key=NC_000913__704168__-1__NC_000913__704673__1__12____300__300__0__0	max_left=174	max_left_minus=174	max_left_plus=174	max_min_left=57	max_min_left_minus=57	max_min_left_plus=57	max_min_right=11	max_min_right_minus=11	max_min_right_plus=11	max_pos_hash_score=566	max_right=104	max_right_minus=104	max_right_plus=104	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=9.986e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=12	side_1_possible_overlap_registers=295	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=6
JC	2065	.	NC_000913	729677	-1	NC_000913	729850	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.228e-01	junction_possible_overlap_registers=295	key=NC_000913__729677__-1__NC_000913__729850__1__0____300__300__0__0	max_left=125	max_left_minus=125	max_left_plus=125	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=590	max_right=283	max_right_minus=49	max_right_plus=283	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=1.228e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.47	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=7
JC	2066	.	NC_000913	729677	-1	NC_000913	3619459	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.045e-01	junction_possible_overlap_registers=295	key=NC_000913__729677__-1__NC_000913__3619459__1__0____300__300__0__1	max_left=125	max_left_minus=125	max_left_plus=125	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=590	max_right=283	max_right_minus=49	max_right_plus=283	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=1.045e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	2067	.	NC_000913	780918	-1	NC_000913	781321	1	0	alignment_overlap=18	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=7.062e-02	junction_possible_overlap_registers=277	key=NC_000913__780918__-1__NC_000913__781303__1__18____300__300__0__0	max_left=179	max_left_minus=179	max_left_plus=45	max_min_left=45	max_min_left_minus=0	max_min_left_plus=45	max_min_right=48	max_min_right_minus=48	max_min_right_plus=0	max_pos_hash_score=554	max_right=48	max_right_minus=48	max_right_plus=48	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=7.062e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=18	side_1_possible_overlap_registers=295	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=3
JC	2068	.	NC_000913	781222	-1	NC_000913	781321	1	0	alignment_overlap=18	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.368e-02	junction_possible_overlap_registers=277	key=NC_000913__781222__-1__NC_000913__781303__1__18____300__300__0__0	max_left=196	max_left_minus=123	max_left_plus=196	max_min_left=45	max_min_left_minus=0	max_min_left_plus=45	max_min_right=1	max_min_right_minus=1	max_min_right_plus=1	max_pos_hash_score=554	max_right=48	max_right_minus=1	max_right_plus=48	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=7.368e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=18	side_1_possible_overlap_registers=295	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=4
JC	2069	.	NC_000913	781222	-1	NC_000913	781445	1	0	alignment_overlap=76	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.692e-01	junction_possible_overlap_registers=219	key=NC_000913__781222__-1__NC_000913__781369__1__76____300__300__0__0	max_left=138	max_left_minus=138	max_left_plus=138	max_min_left=108	max_min_left_minus=61	max_min_left_plus=108	max_min_right=76	max_min_right_minus=76	max_min_right_plus=1	max_pos_hash_score=438	max_right=183	max_right_minus=183	max_right_plus=116	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.13	new_junction_read_count=8	polymorphism_frequency=1.692e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=76	side_1_possible_overlap_registers=295	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=219	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=8
JC	2070	.	NC_000913	781369	1	NC_000913	2521006	-1	-2	alignment_overlap=-2	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.479e-01	junction_possible_overlap_registers=293	key=NC_000913__781369__1__NC_000913__2521006__-1__-2__GG__300__300__0__0	max_left=140	max_left_minus=140	max_left_plus=117	max_min_left=63	max_min_left_minus=0	max_min_left_plus=63	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=586	max_right=232	max_right_minus=47	max_right_plus=232	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.12	new_junction_read_count=10	polymorphism_frequency=1.479e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=GG
JC	2071	.	NC_000913	781369	1	NC_000913	2521127	-1	-1	alignment_overlap=-1	coverage_minus=5	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.305e-01	junction_possible_overlap_registers=294	key=NC_000913__781369__1__NC_000913__2521127__-1__-1__G__300__300__0__0	max_left=140	max_left_minus=140	max_left_plus=117	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=48	max_min_right_minus=48	max_min_right_plus=48	max_pos_hash_score=588	max_right=48	max_right_minus=48	max_right_plus=48	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=1.305e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=G
JC	2072	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=28	coverage_plus=25	flanking_left=300	flanking_right=300	frequency=6.522e-01	junction_possible_overlap_registers=279	key=NC_000913__1207790__1__NC_000913__1209603__1__16____300__300__0__0	max_left=253	max_left_minus=253	max_left_plus=250	max_min_left=139	max_min_left_minus=135	max_min_left_plus=139	max_min_right=137	max_min_right_minus=124	max_min_right_plus=137	max_pos_hash_score=558	max_right=280	max_right_minus=274	max_right_plus=280	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.67	new_junction_read_count=54	polymorphism_frequency=6.522e-01	pos_hash_score=35	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.30	side_1_overlap=16	side_1_possible_overlap_registers=295	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.41	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=53
JC	2073	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=28	coverage_plus=17	flanking_left=300	flanking_right=300	frequency=5.983e-01	junction_possible_overlap_registers=279	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____300__300__0__0	max_left=282	max_left_minus=282	max_left_plus=276	max_min_left=139	max_min_left_minus=139	max_min_left_plus=114	max_min_right=142	max_min_right_minus=142	max_min_right_plus=123	max_pos_hash_score=558	max_right=274	max_right_minus=262	max_right_plus=274	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.56	new_junction_read_count=45	polymorphism_frequency=5.983e-01	pos_hash_score=32	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.34	side_1_overlap=16	side_1_possible_overlap_registers=295	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.41	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=45
JC	2074	.	NC_000913	1235323	1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=25	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1235323__1__NC_000913__1467910__1__0____300__300__0__1	max_left=297	max_left_minus=272	max_left_plus=297	max_min_left=144	max_min_left_minus=144	max_min_left_plus=140	max_min_right=146	max_min_right_minus=146	max_min_right_plus=139	max_pos_hash_score=590	max_right=265	max_right_minus=265	max_right_plus=241	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.69	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=59
JC	2075	.	NC_000913	1235327	-1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1235327__-1__NC_000913__1469240__-1__0____300__300__0__1	max_left=294	max_left_minus=266	max_left_plus=294	max_min_left=145	max_min_left_minus=145	max_min_left_plus=127	max_min_right=145	max_min_right_minus=100	max_min_right_plus=145	max_pos_hash_score=590	max_right=295	max_right_minus=295	max_right_plus=287	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.79	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=68
JC	2076	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=7	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=2.506e-01	junction_possible_overlap_registers=275	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=271	max_min_left=13	max_min_left_minus=0	max_min_left_plus=13	max_min_right=60	max_min_right_minus=60	max_min_right_plus=60	max_pos_hash_score=550	max_right=276	max_right_minus=60	max_right_plus=276	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.18	new_junction_read_count=14	polymorphism_frequency=2.506e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=20	side_1_possible_overlap_registers=295	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.49	side_2_overlap=0	side_2_possible_overlap_registers=275	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=14
JC	2077	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.296e-01	junction_possible_overlap_registers=275	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=256	max_left_minus=225	max_left_plus=256	max_min_left=22	max_min_left_minus=21	max_min_left_plus=22	max_min_right=122	max_min_right_minus=122	max_min_right_plus=24	max_pos_hash_score=550	max_right=276	max_right_minus=122	max_right_plus=276	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=1.296e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=20	side_1_possible_overlap_registers=295	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.49	side_2_overlap=0	side_2_possible_overlap_registers=275	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=7
JC	2078	.	NC_000913	1291151	1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1291151__1__NC_000913__2290113__-1__0____300__300__0__1	max_left=295	max_left_minus=294	max_left_plus=295	max_min_left=147	max_min_left_minus=146	max_min_left_plus=147	max_min_right=146	max_min_right_minus=135	max_min_right_plus=146	max_pos_hash_score=590	max_right=288	max_right_minus=283	max_right_plus=288	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.85	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=72
JC	2079	.	NC_000913	1291154	-1	NC_000913	2101749	1	0	alignment_overlap=1	coverage_minus=34	coverage_plus=26	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1291155__-1__NC_000913__2101749__1__1____300__300__0__1	max_left=294	max_left_minus=294	max_left_plus=285	max_min_left=135	max_min_left_minus=135	max_min_left_plus=135	max_min_right=147	max_min_right_minus=147	max_min_right_plus=131	max_pos_hash_score=588	max_right=285	max_right_minus=285	max_right_plus=282	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.70	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=60
JC	2080	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=45	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=284	max_left_plus=294	max_min_left=146	max_min_left_minus=120	max_min_left_plus=146	max_min_right=140	max_min_right_minus=138	max_min_right_plus=140	max_pos_hash_score=582	max_right=291	max_right_minus=285	max_right_plus=291	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.22	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=100
JC	2081	.	NC_000913	1411924	-1	NC_000913	1434985	1	0	alignment_overlap=26	coverage_minus=24	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=269	key=NC_000913__1411924__-1__NC_000913__1434959__1__26____300__300__0__0	max_left=271	max_left_minus=255	max_left_plus=271	max_min_left=125	max_min_left_minus=125	max_min_left_plus=114	max_min_right=137	max_min_right_minus=132	max_min_right_plus=137	max_pos_hash_score=538	max_right=266	max_right_minus=248	max_right_plus=266	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.87	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	2082	.	NC_000913	1469240	-1	NC_000913	1655878	-1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1469240__-1__NC_000913__1655878__-1__0____300__300__1__0	max_left=288	max_left_minus=284	max_left_plus=288	max_min_left=137	max_min_left_minus=137	max_min_left_plus=133	max_min_right=142	max_min_right_minus=138	max_min_right_plus=142	max_pos_hash_score=590	max_right=295	max_right_minus=295	max_right_plus=281	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.91	new_junction_read_count=78	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=77
JC	2083	.	NC_000913	1651548	-1	NC_000913	1655874	1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1651548__-1__NC_000913__1655874__1__0____300__300__1__0	max_left=294	max_left_minus=279	max_left_plus=294	max_min_left=142	max_min_left_minus=139	max_min_left_plus=142	max_min_right=145	max_min_right_minus=131	max_min_right_plus=145	max_pos_hash_score=590	max_right=288	max_right_minus=267	max_right_plus=288	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.74	new_junction_read_count=63	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60
JC	2084	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=49	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=287	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=290	max_left_minus=290	max_left_plus=286	max_min_left=144	max_min_left_minus=132	max_min_left_plus=144	max_min_right=142	max_min_right_minus=135	max_min_right_plus=142	max_pos_hash_score=574	max_right=286	max_right_minus=286	max_right_plus=280	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.05	new_junction_read_count=87	polymorphism_frequency=9.274e-01	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.16	side_1_overlap=8	side_1_possible_overlap_registers=295	side_1_read_count=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	2085	.	NC_000913	1978503	1	NC_000913	2238267	1	0	alignment_overlap=0	coverage_minus=35	coverage_plus=23	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1978503__1__NC_000913__2238267__1__0____300__300__1__0	max_left=297	max_left_minus=289	max_left_plus=297	max_min_left=147	max_min_left_minus=139	max_min_left_plus=147	max_min_right=146	max_min_right_minus=138	max_min_right_plus=146	max_pos_hash_score=590	max_right=296	max_right_minus=283	max_right_plus=296	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.69	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=58
JC	2086	.	NC_000913	1978503	1	NC_000913	4466013	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=28	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1978503__1__NC_000913__4466013__1__0____300__300__1__0	max_left=291	max_left_minus=286	max_left_plus=291	max_min_left=142	max_min_left_minus=139	max_min_left_plus=142	max_min_right=146	max_min_right_minus=142	max_min_right_plus=146	max_pos_hash_score=590	max_right=293	max_right_minus=293	max_right_plus=293	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.90	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	2087	.	NC_000913	1979270	-1	NC_000913	2238275	-1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1979270__-1__NC_000913__2238275__-1__0____300__300__1__0	max_left=290	max_left_minus=276	max_left_plus=290	max_min_left=149	max_min_left_minus=147	max_min_left_plus=149	max_min_right=146	max_min_right_minus=146	max_min_right_plus=57	max_pos_hash_score=590	max_right=288	max_right_minus=284	max_right_plus=288	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.98	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	2088	.	NC_000913	1979270	-1	NC_000913	2323117	1	0	alignment_overlap=1	coverage_minus=56	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979270__-1__NC_000913__2323116__1__1____300__300__1__0	max_left=290	max_left_minus=290	max_left_plus=279	max_min_left=145	max_min_left_minus=145	max_min_left_plus=134	max_min_right=146	max_min_right_minus=146	max_min_right_plus=144	max_pos_hash_score=588	max_right=291	max_right_minus=249	max_right_plus=291	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=105	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97
JC	2089	.	NC_000913	1979270	-1	NC_000913	4569764	-1	0	alignment_overlap=0	coverage_minus=53	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1979270__-1__NC_000913__4569764__-1__0____300__300__1__0	max_left=295	max_left_minus=278	max_left_plus=295	max_min_left=147	max_min_left_minus=147	max_min_left_plus=145	max_min_right=144	max_min_right_minus=144	max_min_right_plus=141	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.12	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	2090	.	NC_000913	2011968	1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=64	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__2011968__1__NC_000913__2101749__1__0____300__300__0__1	max_left=299	max_left_minus=293	max_left_plus=299	max_min_left=141	max_min_left_minus=141	max_min_left_plus=138	max_min_right=148	max_min_right_minus=148	max_min_right_plus=122	max_pos_hash_score=590	max_right=292	max_right_minus=292	max_right_plus=291	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.37	new_junction_read_count=117	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=113
JC	2091	.	NC_000913	2011971	-1	NC_000913	2102943	-1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__2011971__-1__NC_000913__2102943__-1__0____300__300__0__1	max_left=297	max_left_minus=281	max_left_plus=297	max_min_left=144	max_min_left_minus=144	max_min_left_plus=144	max_min_right=147	max_min_right_minus=147	max_min_right_plus=124	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=288	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=76
JC	2092	.	NC_000913	2068941	1	NC_000913	2320770	1	0	alignment_overlap=1	coverage_minus=33	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2068941__1__NC_000913__2320769__1__1____300__300__1__0	max_left=286	max_left_minus=283	max_left_plus=286	max_min_left=148	max_min_left_minus=148	max_min_left_plus=116	max_min_right=142	max_min_right_minus=140	max_min_right_plus=142	max_pos_hash_score=588	max_right=293	max_right_minus=293	max_right_plus=249	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.91	new_junction_read_count=78	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	2093	.	NC_000913	2070271	-1	NC_000913	2320774	-1	0	alignment_overlap=0	coverage_minus=50	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__2070271__-1__NC_000913__2320774__-1__0____300__300__1__0	max_left=296	max_left_minus=292	max_left_plus=296	max_min_left=147	max_min_left_minus=137	max_min_left_plus=147	max_min_right=150	max_min_right_minus=127	max_min_right_plus=150	max_pos_hash_score=590	max_right=299	max_right_minus=299	max_right_plus=291	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=91
JC	2094	.	NC_000913	2170171	1	NC_000913	4519239	-1	-70	alignment_overlap=-70	coverage_minus=18	coverage_plus=32	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=225	key=NC_000913__2170171__1__NC_000913__4519239__-1__-70__CAACACTTTAAAATGCCCTATATAGGGTTAACCAGTAATTATCTGTATGATAGCTTTGAGTTCGGGAGGA__300__300__1__0	max_left=198	max_left_minus=196	max_left_plus=198	max_min_left=95	max_min_left_minus=86	max_min_left_plus=95	max_min_right=78	max_min_right_minus=78	max_min_right_plus=70	max_pos_hash_score=450	max_right=229	max_right_minus=225	max_right_plus=229	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.98	new_junction_read_count=64	polymorphism_frequency=NA	pos_hash_score=35	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=50	unique_read_sequence=CAACACTTTAAAATGCCCTATATAGGGTTAACCAGTAATTATCTGTATGATAGCTTTGAGTTCGGGAGGA
JC	2095	.	NC_000913	2288919	1	NC_000913	3131469	1	0	alignment_overlap=1	coverage_minus=33	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2288919__1__NC_000913__3131468__1__1____300__300__1__0	max_left=291	max_left_minus=282	max_left_plus=291	max_min_left=144	max_min_left_minus=124	max_min_left_plus=144	max_min_right=145	max_min_right_minus=131	max_min_right_plus=145	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=283	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.98	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=81
JC	2096	.	NC_000913	2288919	1	NC_000913	3635126	-1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__2288919__1__NC_000913__3635126__-1__0____300__300__1__0	max_left=284	max_left_minus=283	max_left_plus=284	max_min_left=140	max_min_left_minus=139	max_min_left_plus=140	max_min_right=145	max_min_right_minus=142	max_min_right_plus=145	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=294	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.45	new_junction_read_count=124	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119
JC	2097	.	NC_000913	2323124	-1	NC_000913	3584195	-1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__2323124__-1__NC_000913__3584195__-1__0____300__300__0__1	max_left=283	max_left_minus=261	max_left_plus=283	max_min_left=145	max_min_left_minus=145	max_min_left_plus=139	max_min_right=149	max_min_right_minus=140	max_min_right_plus=149	max_pos_hash_score=590	max_right=289	max_right_minus=289	max_right_plus=289	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.05	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	read_count_offset=8	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=287	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=86
JC	2098	.	NC_000913	2357730	-1	NC_000913	2357926	1	0	alignment_overlap=40	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.512e-02	junction_possible_overlap_registers=255	key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0	max_left=226	max_left_minus=130	max_left_plus=226	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=127	max_min_right_minus=127	max_min_right_plus=83	max_pos_hash_score=510	max_right=195	max_right_minus=127	max_right_plus=195	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.512e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=40	side_1_possible_overlap_registers=295	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=255	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=4
JC	2099	.	NC_000913	2514274	1	NC_000913	4543608	1	0	alignment_overlap=3	coverage_minus=63	coverage_plus=26	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__2514274__1__NC_000913__4543605__1__3____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=273	max_min_left=137	max_min_left_minus=137	max_min_left_plus=130	max_min_right=147	max_min_right_minus=147	max_min_right_plus=107	max_pos_hash_score=584	max_right=292	max_right_minus=292	max_right_plus=292	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.07	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	read_count_offset=6	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=89
JC	2100	.	NC_000913	2515616	-1	NC_000913	4543613	-1	0	alignment_overlap=3	coverage_minus=28	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__2515616__-1__NC_000913__4543616__-1__3____300__300__1__0	max_left=296	max_left_minus=292	max_left_plus=296	max_min_left=143	max_min_left_minus=143	max_min_left_plus=135	max_min_right=147	max_min_right_minus=138	max_min_right_plus=147	max_pos_hash_score=584	max_right=292	max_right_minus=292	max_right_plus=233	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.92	new_junction_read_count=78	polymorphism_frequency=9.745e-01	pos_hash_score=54	prediction=consensus	read_count_offset=6	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=76
JC	2101	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=27	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=287	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=284	max_left_minus=274	max_left_plus=284	max_min_left=141	max_min_left_minus=138	max_min_left_plus=141	max_min_right=140	max_min_right_minus=136	max_min_right_plus=140	max_pos_hash_score=574	max_right=286	max_right_minus=257	max_right_plus=286	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=69
JC	2102	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=2	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.361e-01	junction_possible_overlap_registers=270	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=129	max_left_minus=110	max_left_plus=129	max_min_left=110	max_min_left_minus=110	max_min_left_plus=94	max_min_right=106	max_min_right_minus=0	max_min_right_plus=106	max_pos_hash_score=540	max_right=222	max_right_minus=165	max_right_plus=222	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.13	new_junction_read_count=10	polymorphism_frequency=1.361e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=25	side_1_possible_overlap_registers=295	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=8
JC	2103	.	NC_000913	2806048	-1	NC_000913	2806586	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.960e-02	junction_possible_overlap_registers=283	key=NC_000913__2806048__-1__NC_000913__2806574__1__12____300__300__0__0	max_left=89	max_left_minus=89	max_left_plus=89	max_min_left=89	max_min_left_minus=89	max_min_left_plus=89	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=566	max_right=104	max_right_minus=104	max_right_plus=104	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.960e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=12	side_1_possible_overlap_registers=295	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=4
JC	2104	.	NC_000913	2817942	-1	NC_000913	2818492	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.398e-02	junction_possible_overlap_registers=275	key=NC_000913__2817942__-1__NC_000913__2818472__1__20____300__300__0__0	max_left=266	max_left_minus=266	max_left_plus=239	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=41	max_min_right_minus=15	max_min_right_plus=41	max_pos_hash_score=550	max_right=41	max_right_minus=15	max_right_plus=41	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.398e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.45	side_1_overlap=20	side_1_possible_overlap_registers=295	side_1_read_count=124	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=275	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=3
JC	2105	.	NC_000913	2818275	-1	NC_000913	2818551	1	0	alignment_overlap=79	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.134e-01	junction_possible_overlap_registers=216	key=NC_000913__2818275__-1__NC_000913__2818472__1__79____300__300__0__0	max_left=84	max_left_minus=84	max_left_plus=82	max_min_left=84	max_min_left_minus=84	max_min_left_plus=82	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=432	max_right=182	max_right_minus=137	max_right_plus=182	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.08	new_junction_read_count=5	polymorphism_frequency=1.134e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=79	side_1_possible_overlap_registers=295	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=5
JC	2106	.	NC_000913	2877792	-1	NC_000913	2878283	1	0	alignment_overlap=19	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.137e-02	junction_possible_overlap_registers=276	key=NC_000913__2877792__-1__NC_000913__2878264__1__19____300__300__0__0	max_left=183	max_left_minus=183	max_left_plus=183	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=83	max_min_right_minus=83	max_min_right_plus=83	max_pos_hash_score=552	max_right=83	max_right_minus=83	max_right_plus=83	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.137e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=19	side_1_possible_overlap_registers=295	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=4
JC	2107	.	NC_000913	2904043	-1	NC_000913	2904288	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.192e-02	junction_possible_overlap_registers=292	key=NC_000913__2904043__-1__NC_000913__2904285__1__3____300__300__0__0	max_left=184	max_left_minus=184	max_left_plus=91	max_min_left=95	max_min_left_minus=95	max_min_left_plus=91	max_min_right=111	max_min_right_minus=111	max_min_right_plus=0	max_pos_hash_score=584	max_right=206	max_right_minus=202	max_right_plus=206	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.192e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=3	side_1_possible_overlap_registers=295	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=3
JC	2108	.	NC_000913	2947467	-1	NC_000913	2947688	1	0	alignment_overlap=83	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.265e-01	junction_possible_overlap_registers=212	key=NC_000913__2947467__-1__NC_000913__2947605__1__83____300__300__0__0	max_left=192	max_left_minus=192	max_left_plus=84	max_min_left=101	max_min_left_minus=101	max_min_left_plus=84	max_min_right=25	max_min_right_minus=25	max_min_right_plus=0	max_pos_hash_score=424	max_right=197	max_right_minus=197	max_right_plus=193	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.11	new_junction_read_count=7	polymorphism_frequency=1.265e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=83	side_1_possible_overlap_registers=295	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=50	side_2_redundant=0	total_non_overlap_reads=7
JC	2109	.	NC_000913	3105438	-1	NC_000913	3105787	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.151e-02	junction_possible_overlap_registers=284	key=NC_000913__3105438__-1__NC_000913__3105776__1__11____300__300__0__0	max_left=121	max_left_minus=121	max_left_plus=121	max_min_left=82	max_min_left_minus=82	max_min_left_plus=11	max_min_right=91	max_min_right_minus=91	max_min_right_plus=91	max_pos_hash_score=568	max_right=199	max_right_minus=199	max_right_plus=199	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.151e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=11	side_1_possible_overlap_registers=295	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=4
JC	2110	.	NC_000913	3269938	-1	NC_000913	3270266	1	0	alignment_overlap=22	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.915e-02	junction_possible_overlap_registers=273	key=NC_000913__3269938__-1__NC_000913__3270244__1__22____300__300__0__0	max_left=124	max_left_minus=124	max_left_plus=124	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=118	max_min_right_minus=118	max_min_right_plus=118	max_pos_hash_score=546	max_right=118	max_right_minus=118	max_right_plus=118	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.915e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.29	side_1_overlap=22	side_1_possible_overlap_registers=295	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=3
JC	2111	.	NC_000913	3469040	-1	NC_000913	3469344	1	0	alignment_overlap=20	coverage_minus=5	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.518e-02	junction_possible_overlap_registers=275	key=NC_000913__3469040__-1__NC_000913__3469324__1__20____300__300__0__0	max_left=169	max_left_minus=169	max_left_plus=102	max_min_left=102	max_min_left_minus=101	max_min_left_plus=102	max_min_right=130	max_min_right_minus=130	max_min_right_plus=0	max_pos_hash_score=550	max_right=169	max_right_minus=165	max_right_plus=169	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=6.518e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=20	side_1_possible_overlap_registers=295	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.58	side_2_overlap=0	side_2_possible_overlap_registers=275	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=7
JC	2112	.	NC_000913	3583428	1	NC_000913	4466021	-1	0	alignment_overlap=0	coverage_minus=57	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__3583428__1__NC_000913__4466021__-1__0____300__300__1__0	max_left=294	max_left_minus=284	max_left_plus=294	max_min_left=147	max_min_left_minus=147	max_min_left_plus=143	max_min_right=148	max_min_right_minus=142	max_min_right_plus=148	max_pos_hash_score=590	max_right=293	max_right_minus=292	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97
JC	2113	.	NC_000913	3583428	1	NC_000913	4525972	1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__3583428__1__NC_000913__4525972__1__0____300__300__1__0	max_left=294	max_left_minus=291	max_left_plus=294	max_min_left=148	max_min_left_minus=148	max_min_left_plus=140	max_min_right=148	max_min_right_minus=148	max_min_right_plus=148	max_pos_hash_score=590	max_right=292	max_right_minus=292	max_right_plus=268	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.25	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104
JC	2114	.	NC_000913	3583428	1	NC_000913	4541425	1	0	alignment_overlap=0	coverage_minus=39	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__3583428__1__NC_000913__4541425__1__0____300__300__1__0	max_left=294	max_left_minus=270	max_left_plus=294	max_min_left=148	max_min_left_minus=148	max_min_left_plus=144	max_min_right=143	max_min_right_minus=123	max_min_right_plus=143	max_pos_hash_score=590	max_right=297	max_right_minus=292	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=88
JC	2115	.	NC_000913	3584195	-1	NC_000913	4541432	-1	0	alignment_overlap=0	coverage_minus=71	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__3584195__-1__NC_000913__4541432__-1__0____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=270	max_min_left=149	max_min_left_minus=149	max_min_left_plus=143	max_min_right=147	max_min_right_minus=144	max_min_right_plus=147	max_pos_hash_score=590	max_right=299	max_right_minus=299	max_right_plus=297	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.53	new_junction_read_count=131	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=131
JC	2116	.	NC_000913	3899353	-1	NC_000913	3899638	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.296e-02	junction_possible_overlap_registers=285	key=NC_000913__3899353__-1__NC_000913__3899628__1__10____300__300__0__0	max_left=273	max_left_minus=273	max_left_plus=259	max_min_left=108	max_min_left_minus=108	max_min_left_plus=108	max_min_right=30	max_min_right_minus=16	max_min_right_plus=30	max_pos_hash_score=570	max_right=164	max_right_minus=164	max_right_plus=164	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.296e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.48	side_1_overlap=10	side_1_possible_overlap_registers=295	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=4
JC	2117	.	NC_000913	4094350	-1	NC_000913	4094719	1	0	alignment_overlap=41	coverage_minus=4	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.665e-01	junction_possible_overlap_registers=254	key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0	max_left=242	max_left_minus=242	max_left_plus=239	max_min_left=119	max_min_left_minus=0	max_min_left_plus=119	max_min_right=128	max_min_right_minus=81	max_min_right_plus=128	max_pos_hash_score=508	max_right=195	max_right_minus=81	max_right_plus=195	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.15	new_junction_read_count=11	polymorphism_frequency=1.665e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=41	side_1_possible_overlap_registers=295	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=11
JC	2118	.	NC_000913	4147156	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=38	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__4147155__1__NC_000913__4498181__1__1____300__300__0__1	max_left=295	max_left_minus=281	max_left_plus=295	max_min_left=147	max_min_left_minus=147	max_min_left_plus=147	max_min_right=141	max_min_right_minus=141	max_min_right_plus=136	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=291	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.91	new_junction_read_count=78	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=74
JC	2119	.	NC_000913	4147160	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__4147160__-1__NC_000913__4499511__-1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=298	max_min_left=148	max_min_left_minus=148	max_min_left_plus=140	max_min_right=144	max_min_right_minus=142	max_min_right_plus=144	max_pos_hash_score=590	max_right=287	max_right_minus=287	max_right_plus=276	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.12	new_junction_read_count=96	polymorphism_frequency=9.895e-01	pos_hash_score=67	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=93
JC	2120	.	NC_000913	4498181	-1	NC_000913	4499518	1	0	alignment_overlap=6	coverage_minus=58	coverage_plus=66	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__4498181__-1__NC_000913__4499512__1__6____300__300__0__0	max_left=292	max_left_minus=289	max_left_plus=292	max_min_left=144	max_min_left_minus=144	max_min_left_plus=138	max_min_right=145	max_min_right_minus=145	max_min_right_plus=138	max_pos_hash_score=578	max_right=293	max_right_minus=293	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.53	new_junction_read_count=128	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=124
JC	2121	.	NC_000913	4498181	1	NC_000913	4543068	-1	0	alignment_overlap=0	coverage_minus=52	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__4498181__1__NC_000913__4543068__-1__0____300__300__1__0	max_left=297	max_left_minus=297	max_left_plus=296	max_min_left=141	max_min_left_minus=137	max_min_left_plus=141	max_min_right=137	max_min_right_minus=137	max_min_right_plus=105	max_pos_hash_score=590	max_right=295	max_right_minus=295	max_right_plus=263	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.12	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=94
JC	2122	.	NC_000913	4499511	-1	NC_000913	4543064	1	0	alignment_overlap=0	coverage_minus=73	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__4499511__-1__NC_000913__4543064__1__0____300__300__1__0	max_left=297	max_left_minus=297	max_left_plus=280	max_min_left=144	max_min_left_minus=141	max_min_left_plus=144	max_min_right=146	max_min_right_minus=141	max_min_right_plus=146	max_pos_hash_score=590	max_right=295	max_right_minus=295	max_right_plus=287	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.48	new_junction_read_count=127	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=126
JC	2123	.	NC_000913	4507458	-1	NC_000913	4509007	1	-118	alignment_overlap=-118	coverage_minus=18	coverage_plus=32	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=177	key=NC_000913__4507458__-1__NC_000913__4509007__1__-118__CGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACT__300__300__0__0	max_left=177	max_left_minus=177	max_left_plus=174	max_min_left=90	max_min_left_minus=90	max_min_left_plus=86	max_min_right=84	max_min_right_minus=73	max_min_right_plus=84	max_pos_hash_score=354	max_right=171	max_right_minus=119	max_right_plus=171	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=51	polymorphism_frequency=NA	pos_hash_score=35	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=50	unique_read_sequence=CGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACT
JC	2124	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.099e-01	junction_possible_overlap_registers=206	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=139	max_left_minus=139	max_left_plus=114	max_min_left=93	max_min_left_minus=93	max_min_left_plus=77	max_min_right=95	max_min_right_minus=74	max_min_right_plus=95	max_pos_hash_score=412	max_right=198	max_right_minus=111	max_right_plus=198	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.12	new_junction_read_count=7	polymorphism_frequency=1.099e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=89	side_1_possible_overlap_registers=295	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=7
JC	2125	.	NC_000913	4620827	-1	NC_000913	4620871	1	-66	alignment_overlap=-66	coverage_minus=20	coverage_plus=24	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=229	key=NC_000913__4620827__-1__NC_000913__4620871__1__-66__AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT__300__300__0__0	max_left=230	max_left_minus=230	max_left_plus=222	max_min_left=104	max_min_left_minus=31	max_min_left_plus=104	max_min_right=101	max_min_right_minus=99	max_min_right_plus=101	max_pos_hash_score=458	max_right=231	max_right_minus=231	max_right_plus=231	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.71	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=44	unique_read_sequence=AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT
UN	2126	.	NC_000913	15648	16454
UN	2127	.	NC_000913	16458	16458
UN	2128	.	NC_000913	16467	16467
UN	2129	.	NC_000913	19795	19795
UN	2130	.	NC_000913	19801	19801
UN	2131	.	NC_000913	19804	19804
UN	2132	.	NC_000913	19837	19837
UN	2133	.	NC_000913	19842	19842
UN	2134	.	NC_000913	19845	19845
UN	2135	.	NC_000913	19850	19850
UN	2136	.	NC_000913	19853	19853
UN	2137	.	NC_000913	19867	19867
UN	2138	.	NC_000913	19872	19872
UN	2139	.	NC_000913	19880	19880
UN	2140	.	NC_000913	19898	19898
UN	2141	.	NC_000913	19908	19908
UN	2142	.	NC_000913	19917	19917
UN	2143	.	NC_000913	19922	19922
UN	2144	.	NC_000913	19926	19926
UN	2145	.	NC_000913	19949	19949
UN	2146	.	NC_000913	19951	19951
UN	2147	.	NC_000913	19968	19969
UN	2148	.	NC_000913	19985	19985
UN	2149	.	NC_000913	19995	19995
UN	2150	.	NC_000913	19999	19999
UN	2151	.	NC_000913	20006	20006
UN	2152	.	NC_000913	20013	20013
UN	2153	.	NC_000913	20029	20029
UN	2154	.	NC_000913	20032	20032
UN	2155	.	NC_000913	20041	20041
UN	2156	.	NC_000913	20058	20058
UN	2157	.	NC_000913	20061	20061
UN	2158	.	NC_000913	20063	20568
UN	2159	.	NC_000913	224014	224512
UN	2160	.	NC_000913	225164	225327
UN	2161	.	NC_000913	227264	227264
UN	2162	.	NC_000913	227266	227267
UN	2163	.	NC_000913	227270	228437
UN	2164	.	NC_000913	228441	228441
UN	2165	.	NC_000913	255892	274869
UN	2166	.	NC_000913	279421	279662
UN	2167	.	NC_000913	279664	279666
UN	2168	.	NC_000913	279669	279669
UN	2169	.	NC_000913	279671	279672
UN	2170	.	NC_000913	279678	279678
UN	2171	.	NC_000913	279680	279680
UN	2172	.	NC_000913	290918	291128
UN	2173	.	NC_000913	315495	316203
UN	2174	.	NC_000913	316207	316207
UN	2175	.	NC_000913	316218	316218
UN	2176	.	NC_000913	381526	382324
UN	2177	.	NC_000913	391984	392697
UN	2178	.	NC_000913	526037	526037
UN	2179	.	NC_000913	526040	526040
UN	2180	.	NC_000913	526046	526046
UN	2181	.	NC_000913	526048	526048
UN	2182	.	NC_000913	526050	526436
UN	2183	.	NC_000913	526438	526438
UN	2184	.	NC_000913	567034	567034
UN	2185	.	NC_000913	567055	567770
UN	2186	.	NC_000913	574863	579183
UN	2187	.	NC_000913	608279	609084
UN	2188	.	NC_000913	609087	609088
UN	2189	.	NC_000913	688119	688119
UN	2190	.	NC_000913	688129	688129
UN	2191	.	NC_000913	688131	688765
UN	2192	.	NC_000913	1094494	1094494
UN	2193	.	NC_000913	1094500	1095224
UN	2194	.	NC_000913	1299499	1300697
UN	2195	.	NC_000913	1396322	1396976
UN	2196	.	NC_000913	1411925	1434967
UN	2197	.	NC_000913	1468165	1468974
UN	2198	.	NC_000913	1469547	1469547
UN	2199	.	NC_000913	1469549	1469549
UN	2200	.	NC_000913	1469551	1469556
UN	2201	.	NC_000913	1469558	1470226
UN	2202	.	NC_000913	1528587	1528890
UN	2203	.	NC_000913	1528893	1528893
UN	2204	.	NC_000913	1528895	1528897
UN	2205	.	NC_000913	1528900	1528901
UN	2206	.	NC_000913	1528926	1528926
UN	2207	.	NC_000913	1528928	1528928
UN	2208	.	NC_000913	1651116	1651118
UN	2209	.	NC_000913	1651120	1651121
UN	2210	.	NC_000913	1651123	1651274
UN	2211	.	NC_000913	1651276	1651276
UN	2212	.	NC_000913	1978679	1979278
UN	2213	.	NC_000913	2067003	2067003
UN	2214	.	NC_000913	2067006	2067032
UN	2215	.	NC_000913	2069181	2070005
UN	2216	.	NC_000913	2102002	2102663
UN	2217	.	NC_000913	2170437	2170438
UN	2218	.	NC_000913	2170440	2171194
UN	2219	.	NC_000913	2289195	2289195
UN	2220	.	NC_000913	2289197	2289197
UN	2221	.	NC_000913	2289199	2289833
UN	2222	.	NC_000913	2514528	2515367
UN	2223	.	NC_000913	2558699	2565488
UN	2224	.	NC_000913	2726324	2726324
UN	2225	.	NC_000913	2726328	2728995
UN	2226	.	NC_000913	2728998	2729000
UN	2227	.	NC_000913	2729010	2729010
UN	2228	.	NC_000913	2729815	2730705
UN	2229	.	NC_000913	2996630	2997426
UN	2230	.	NC_000913	2997428	2997428
UN	2231	.	NC_000913	2997431	2997433
UN	2232	.	NC_000913	2997436	2997438
UN	2233	.	NC_000913	2997440	2997440
UN	2234	.	NC_000913	3130423	3131468
UN	2235	.	NC_000913	3186364	3186365
UN	2236	.	NC_000913	3186368	3187160
UN	2237	.	NC_000913	3365836	3366464
UN	2238	.	NC_000913	3366468	3366468
UN	2239	.	NC_000913	3366470	3366470
UN	2240	.	NC_000913	3423933	3424374
UN	2241	.	NC_000913	3424376	3424376
UN	2242	.	NC_000913	3424932	3424933
UN	2243	.	NC_000913	3424936	3426914
UN	2244	.	NC_000913	3426954	3426954
UN	2245	.	NC_000913	3427210	3428286
UN	2246	.	NC_000913	3583682	3583682
UN	2247	.	NC_000913	3583686	3583686
UN	2248	.	NC_000913	3583688	3583920
UN	2249	.	NC_000913	3619531	3620801
UN	2250	.	NC_000913	3621354	3621354
UN	2251	.	NC_000913	3621356	3622023
UN	2252	.	NC_000913	3622027	3622027
UN	2253	.	NC_000913	3622029	3622029
UN	2254	.	NC_000913	3622031	3622031
UN	2255	.	NC_000913	3622033	3622036
UN	2256	.	NC_000913	3622049	3622049
UN	2257	.	NC_000913	3635127	3652944
UN	2258	.	NC_000913	3762523	3765048
UN	2259	.	NC_000913	3942310	3943153
UN	2260	.	NC_000913	3943155	3943155
UN	2261	.	NC_000913	3943158	3943158
UN	2262	.	NC_000913	3944309	3944310
UN	2263	.	NC_000913	3944315	3945291
UN	2264	.	NC_000913	4035443	4036820
UN	2265	.	NC_000913	4038117	4038117
UN	2266	.	NC_000913	4038120	4038405
UN	2267	.	NC_000913	4039001	4039106
UN	2268	.	NC_000913	4039673	4040329
UN	2269	.	NC_000913	4040331	4040333
UN	2270	.	NC_000913	4040335	4040335
UN	2271	.	NC_000913	4166548	4166548
UN	2272	.	NC_000913	4166551	4166551
UN	2273	.	NC_000913	4166556	4166556
UN	2274	.	NC_000913	4166560	4166565
UN	2275	.	NC_000913	4166568	4166568
UN	2276	.	NC_000913	4166571	4166599
UN	2277	.	NC_000913	4166920	4167940
UN	2278	.	NC_000913	4168837	4171378
UN	2279	.	NC_000913	4176795	4176842
UN	2280	.	NC_000913	4176845	4176845
UN	2281	.	NC_000913	4176848	4176849
UN	2282	.	NC_000913	4176853	4176853
UN	2283	.	NC_000913	4208395	4208396
UN	2284	.	NC_000913	4208398	4208399
UN	2285	.	NC_000913	4208401	4209492
UN	2286	.	NC_000913	4209496	4209496
UN	2287	.	NC_000913	4210316	4212840
UN	2288	.	NC_000913	4498182	4499517
UN	2289	.	NC_000913	4507459	4508673
UN	2290	.	NC_000913	4519240	4525971
UN	2291	.	NC_000913	4569765	4591597
UN	2292	.	NC_000913	4620828	4620870
UN	2293	.	NC_000913	4621660	4623102