#=GENOME_DIFF	1.0
#=CREATED	00:23:41 11 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9628_S35_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9628_S35_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9628_S35_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9628_S35_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9628_S35_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	365701050
#=CONVERTED-READS	1234076
#=INPUT-BASES	365773301
#=INPUT-READS	1234322
#=MAPPED-BASES	354759168
#=MAPPED-READS	1197890
DEL	1	364,376	NC_000913	62379	25896
SNP	2	171	NC_000913	89089	A
SNP	3	172	NC_000913	89103	C
SNP	4	173	NC_000913	89143	G
SNP	5	174	NC_000913	89145	T
SNP	6	175	NC_000913	89239	A
SNP	7	176	NC_000913	89241	A
SNP	8	177	NC_000913	89263	G
SNP	9	178	NC_000913	89316	C
SNP	10	179	NC_000913	89321	G
SNP	11	180	NC_000913	89471	G
SNP	12	181	NC_000913	89570	C
SNP	13	182	NC_000913	89699	C
SNP	14	183	NC_000913	89754	C
SNP	15	184	NC_000913	90432	G
SNP	16	185	NC_000913	90435	C
SNP	17	186	NC_000913	91904	A
SNP	18	187	NC_000913	91916	T
SNP	19	188	NC_000913	91922	A
SNP	20	189	NC_000913	91949	T
SNP	21	190	NC_000913	92096	T
SNP	22	191	NC_000913	92162	T
SNP	23	192	NC_000913	92327	T
SNP	24	193	NC_000913	92354	G
SNP	25	194	NC_000913	92687	G
SNP	26	195	NC_000913	92810	C
SNP	27	196	NC_000913	92843	G
SNP	28	197	NC_000913	94278	A
SNP	29	198	NC_000913	134256	T
SNP	30	200	NC_000913	246747	T
DEL	31	365,378	NC_000913	257908	776
SNP	32	201	NC_000913	284535	G
SNP	33	202	NC_000913	313543	A
DEL	34	366,381	NC_000913	339199	36219
SUB	35	204,205	NC_000913	480295	2	AA
SNP	36	206	NC_000913	553161	A
SNP	37	207	NC_000913	690948	A
SNP	38	208	NC_000913	700038	A
MOB	39	382,384	NC_000913	789812	IS2	-1	5
SNP	40	209	NC_000913	791688	A
SUB	41	210,211	NC_000913	809217	2	AG
MOB	42	379,380	NC_000913	922378	IS1	-1	9
SNP	43	213	NC_000913	968837	A
SNP	44	214	NC_000913	1040126	T
SNP	45	215	NC_000913	1061935	A
MOB	46	383,390	NC_000913	1093481	IS2	1	5
SNP	47	217	NC_000913	1100070	A
SUB	48	218,219	NC_000913	1111727	2	TT
SNP	49	220	NC_000913	1123556	T
SNP	50	221	NC_000913	1169836	G
SNP	51	222	NC_000913	1189980	G
SNP	52	223	NC_000913	1196220	T
SNP	53	224	NC_000913	1196232	T
SNP	54	225	NC_000913	1196245	C
SNP	55	226	NC_000913	1196247	G
SNP	56	227	NC_000913	1196277	T
SNP	57	228	NC_000913	1196280	C
SNP	58	229	NC_000913	1196283	G
SNP	59	230	NC_000913	1196292	T
SNP	60	231	NC_000913	1196304	A
SNP	61	236	NC_000913	1301992	T
SNP	62	237	NC_000913	1306736	G
SNP	63	238	NC_000913	1310770	G
SNP	64	239	NC_000913	1331947	T
SNP	65	240	NC_000913	1337394	G
SNP	66	241	NC_000913	1357202	T
SNP	67	242	NC_000913	1358859	C
SNP	68	244	NC_000913	1412897	A
SNP	69	245	NC_000913	1428087	T
SNP	70	254	NC_000913	1610076	G
SNP	71	255	NC_000913	1610440	T
SNP	72	256	NC_000913	1643679	T
MOB	73	393,394	NC_000913	1651851	IS2	-1	5
SNP	74	257	NC_000913	1652331	C
DEL	75	368,395	NC_000913	1704350	390
SNP	76	258	NC_000913	1721136	T
SNP	77	259	NC_000913	1738377	T
SNP	78	260	NC_000913	1776715	T
SNP	79	261	NC_000913	1856968	A
SNP	80	262	NC_000913	1894839	C
SNP	81	263	NC_000913	1975224	A
SNP	82	264	NC_000913	1987499	A
SNP	83	265	NC_000913	2003276	C
SNP	84	266	NC_000913	2003462	A
SNP	85	267	NC_000913	2040433	A
DEL	86	270,271	NC_000913	2173363	2
SNP	87	272	NC_000913	2175991	A
SNP	88	273	NC_000913	2188087	C
DEL	89	370,400	NC_000913	2238416	19
DEL	90	371,401	NC_000913	2259357	3552
DEL	91	274	NC_000913	2263441	1
MOB	92	399,402	NC_000913	2317414	IS2	1	5
SNP	93	276	NC_000913	2384808	T
SNP	94	277	NC_000913	2410419	A
SNP	95	279	NC_000913	2484827	T
SNP	96	281	NC_000913	2700747	A
SNP	97	282	NC_000913	2748396	A
SNP	98	283	NC_000913	2756976	A
SNP	99	284	NC_000913	2780060	A
SNP	100	285	NC_000913	2792209	A
SNP	101	286	NC_000913	2800435	A
SNP	102	287	NC_000913	2810925	A
SNP	103	289	NC_000913	2817850	A
SNP	104	290	NC_000913	2825328	A
SNP	105	291	NC_000913	2841238	A
SNP	106	292	NC_000913	2863773	T
SNP	107	293	NC_000913	2878077	T
SNP	108	294	NC_000913	2889365	T
SNP	109	295	NC_000913	2905825	T
MOB	110	407,408	NC_000913	2913392	IS2	-1	5
SNP	111	296	NC_000913	2926292	T
SUB	112	299,300	NC_000913	3088010	2	TT
SUB	113	301,302	NC_000913	3336411	2	AT
SNP	114	304	NC_000913	3367944	A
SNP	115	305	NC_000913	3388041	G
SNP	116	306	NC_000913	3399929	T
SNP	117	307	NC_000913	3421921	A
SNP	118	308	NC_000913	3436697	A
SNP	119	309	NC_000913	3449779	A
SNP	120	310	NC_000913	3468768	T
SNP	121	311	NC_000913	3474425	C
SNP	122	312	NC_000913	3543877	A
INS	123	313	NC_000913	3560455	G
SNP	124	316	NC_000913	3629921	T
SNP	125	317	NC_000913	3682515	T
SNP	126	318	NC_000913	3696909	A
SNP	127	319	NC_000913	3707947	A
DEL	128	373,411	NC_000913	3708467	168
SNP	129	320	NC_000913	3725176	G
SNP	130	321	NC_000913	3761230	A
SNP	131	323	NC_000913	3771979	T
INS	132	324	NC_000913	3815883	C
INS	133	412	NC_000913	3822651	CAGGAT	repeat_length=6	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CAGGAT
SNP	134	325	NC_000913	3823162	T
SNP	135	326	NC_000913	3869637	A
SNP	136	327	NC_000913	3878536	A
SNP	137	328	NC_000913	3883678	A
SNP	138	330	NC_000913	3912074	A
SNP	139	331	NC_000913	3931069	T
MOB	140	413,414	NC_000913	3938983	IS2	-1	5
SNP	141	332	NC_000913	3955304	T
SNP	142	333	NC_000913	3988115	T
SNP	143	334	NC_000913	3993531	C
SNP	144	335	NC_000913	3996049	A
SNP	145	336	NC_000913	4011802	T
SNP	146	337	NC_000913	4084903	G
SNP	147	338	NC_000913	4092703	G
SNP	148	339	NC_000913	4124455	G
SNP	149	341	NC_000913	4210041	A
SNP	150	342	NC_000913	4223638	C
SNP	151	343	NC_000913	4257353	A
SNP	152	344	NC_000913	4257526	A
SNP	153	345	NC_000913	4261450	A
SNP	154	346	NC_000913	4261924	A
MOB	155	397,410	NC_000913	4289448	IS1	1	9
INS	156	349,350	NC_000913	4296381	GC
SNP	157	351	NC_000913	4337390	T
SNP	158	352	NC_000913	4338916	T
SNP	159	353	NC_000913	4349993	T
SNP	160	354	NC_000913	4375354	A
SNP	161	355	NC_000913	4380367	T
SNP	162	356	NC_000913	4425688	A
SNP	163	357	NC_000913	4425696	A
SUB	164	358,359	NC_000913	4436956	2	TT
SNP	165	360	NC_000913	4532409	G
SNP	166	361	NC_000913	4546601	T
SNP	167	362	NC_000913	4578548	A
SNP	168	363	NC_000913	4585230	G
RA	169	.	NC_000913	12152	0	G	T	bias_e_value=17.999	bias_p_value=3.87772e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.7	fisher_strand_p_value=2.38655e-07	frequency=3.368e-01	ks_quality_p_value=1	major_base=G	major_cov=30/33	major_frequency=6.632e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.368e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=30/33	total_cov=30/65
RA	170	.	NC_000913	58065	0	C	A	bias_e_value=1.71227	bias_p_value=3.68892e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.9	fisher_strand_p_value=1.96809e-08	frequency=3.516e-01	ks_quality_p_value=1	major_base=C	major_cov=27/32	major_frequency=6.484e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.516e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=27/32	total_cov=59/32
RA	171	.	NC_000913	89089	0	C	A	consensus_score=254.5	frequency=1	major_base=A	major_cov=55/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/22
RA	172	.	NC_000913	89103	0	G	C	consensus_score=328.8	frequency=1	major_base=C	major_cov=58/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/27
RA	173	.	NC_000913	89143	0	A	G	consensus_score=357.8	frequency=1	major_base=G	major_cov=66/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/27
RA	174	.	NC_000913	89145	0	G	T	consensus_score=343.9	frequency=1	major_base=T	major_cov=66/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/27
RA	175	.	NC_000913	89239	0	G	A	consensus_score=341.8	frequency=1	major_base=A	major_cov=62/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/40
RA	176	.	NC_000913	89241	0	C	A	consensus_score=353.3	frequency=1	major_base=A	major_cov=62/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/40
RA	177	.	NC_000913	89263	0	A	G	consensus_score=443.3	frequency=1	major_base=G	major_cov=59/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/59
RA	178	.	NC_000913	89316	0	T	C	consensus_score=455.3	frequency=1	major_base=C	major_cov=55/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/67
RA	179	.	NC_000913	89321	0	A	G	bias_e_value=261396	bias_p_value=0.0563153	consensus_score=328.3	fisher_strand_p_value=0.0100573	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/58	major_frequency=9.211e-01	minor_base=T	minor_cov=0/9	new_cov=47/58	polymorphism_frequency=9.211e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/67
RA	180	.	NC_000913	89471	0	T	G	consensus_score=370.7	frequency=1	major_base=G	major_cov=38/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/60
RA	181	.	NC_000913	89570	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=279.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=39/36	major_frequency=9.868e-01	minor_base=A	minor_cov=1/0	new_cov=39/36	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=40/36
RA	182	.	NC_000913	89699	0	T	C	consensus_score=256.5	frequency=1	major_base=C	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	183	.	NC_000913	89754	0	T	C	consensus_score=278.1	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	184	.	NC_000913	90432	0	A	G	consensus_score=252.4	frequency=1	major_base=G	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	185	.	NC_000913	90435	0	T	C	bias_e_value=2453050	bias_p_value=0.528487	consensus_score=239.7	fisher_strand_p_value=0.204126	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/37	major_frequency=9.706e-01	minor_base=T	minor_cov=2/0	new_cov=29/37	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=31/37
RA	186	.	NC_000913	91904	0	G	A	consensus_score=209.8	frequency=1	major_base=A	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	187	.	NC_000913	91916	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=212.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/30	major_frequency=9.839e-01	minor_base=G	minor_cov=0/1	new_cov=31/30	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=31/32
RA	188	.	NC_000913	91922	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=209.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/31	major_frequency=9.839e-01	minor_base=C	minor_cov=1/0	new_cov=30/31	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	189	.	NC_000913	91949	0	C	T	consensus_score=215.5	frequency=1	major_base=T	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	190	.	NC_000913	92096	0	A	T	consensus_score=219.5	frequency=1	major_base=T	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	191	.	NC_000913	92162	0	C	T	consensus_score=263.8	frequency=1	major_base=T	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	192	.	NC_000913	92327	0	G	T	consensus_score=281.5	frequency=1	major_base=T	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	193	.	NC_000913	92354	0	A	G	consensus_score=301.9	frequency=1	major_base=G	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	194	.	NC_000913	92687	0	A	G	consensus_score=230.0	frequency=1	major_base=G	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	195	.	NC_000913	92810	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=225.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/28	major_frequency=9.836e-01	minor_base=A	minor_cov=1/0	new_cov=32/28	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	196	.	NC_000913	92843	0	A	G	bias_e_value=3347770	bias_p_value=0.721246	consensus_score=213.8	fisher_strand_p_value=0.366667	frequency=1	ks_quality_p_value=0.964488	major_base=G	major_cov=38/21	major_frequency=9.833e-01	minor_base=.	minor_cov=0/1	new_cov=38/21	polymorphism_frequency=9.833e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=0/0	total_cov=38/22
RA	197	.	NC_000913	94278	0	G	A	consensus_score=195.2	frequency=1	major_base=A	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	198	.	NC_000913	134256	0	G	T	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=200.2	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/36	major_frequency=9.841e-01	minor_base=C	minor_cov=1/0	new_cov=26/36	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	199	.	NC_000913	228689	0	T	.	bias_e_value=3974610	bias_p_value=0.856291	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.6	fisher_strand_p_value=0.514313	frequency=3.196e-01	ks_quality_p_value=1	major_base=T	major_cov=31/35	major_frequency=6.804e-01	minor_base=.	minor_cov=12/19	new_cov=12/19	polymorphism_frequency=3.196e-01	polymorphism_score=133.8	prediction=polymorphism	ref_cov=31/35	total_cov=43/55
RA	200	.	NC_000913	246747	0	G	T	consensus_score=320.2	frequency=1	major_base=T	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	201	.	NC_000913	284535	0	T	G	consensus_score=118.1	frequency=1	major_base=G	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	202	.	NC_000913	313543	0	G	A	consensus_score=276.2	frequency=1	major_base=A	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	203	.	NC_000913	320845	0	C	A	bias_e_value=2627.89	bias_p_value=0.000566154	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.2	fisher_strand_p_value=5.21229e-05	frequency=3.182e-01	ks_quality_p_value=1	major_base=C	major_cov=38/22	major_frequency=6.818e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.182e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=38/22	total_cov=66/22
RA	204	.	NC_000913	480295	0	G	A	consensus_score=403.2	frequency=1	major_base=A	major_cov=54/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/62
RA	205	.	NC_000913	480296	0	G	A	bias_e_value=3812910	bias_p_value=0.821455	consensus_score=401.6	fisher_strand_p_value=0.465517	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/62	major_frequency=9.914e-01	minor_base=G	minor_cov=1/0	new_cov=53/62	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=54/62
RA	206	.	NC_000913	553161	0	G	A	consensus_score=287.4	frequency=1	major_base=A	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	207	.	NC_000913	690948	0	G	A	consensus_score=316.1	frequency=1	major_base=A	major_cov=42/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/47
RA	208	.	NC_000913	700038	0	G	A	consensus_score=286.1	frequency=1	major_base=A	major_cov=49/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/35
RA	209	.	NC_000913	791688	0	G	A	consensus_score=222.2	frequency=1	major_base=A	major_cov=31/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	210	.	NC_000913	809217	0	C	A	consensus_score=213.2	frequency=1	major_base=A	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	211	.	NC_000913	809218	0	A	G	consensus_score=231.4	frequency=1	major_base=G	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	212	.	NC_000913	847955	0	G	A	bias_e_value=2.85508e-06	bias_p_value=6.15101e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.7	fisher_strand_p_value=1.88673e-14	frequency=3.391e-01	ks_quality_p_value=1	major_base=G	major_cov=56/20	major_frequency=6.609e-01	minor_base=A	minor_cov=1/38	new_cov=1/38	polymorphism_frequency=3.391e-01	polymorphism_score=53.3	prediction=polymorphism	ref_cov=56/20	total_cov=57/58
RA	213	.	NC_000913	968837	0	G	A	consensus_score=172.1	frequency=1	major_base=A	major_cov=32/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/22
RA	214	.	NC_000913	1040126	0	G	T	consensus_score=272.4	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	215	.	NC_000913	1061935	0	G	A	consensus_score=242.2	frequency=1	major_base=A	major_cov=51/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/21
RA	216	.	NC_000913	1097118	0	C	A	bias_e_value=947246	bias_p_value=0.204075	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.6	fisher_strand_p_value=0.236461	frequency=3.571e-01	ks_quality_p_value=0.217535	major_base=C	major_cov=11/7	major_frequency=6.429e-01	minor_base=A	minor_cov=3/7	new_cov=3/7	polymorphism_frequency=3.571e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=11/7	total_cov=14/14
RA	217	.	NC_000913	1100070	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=152.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=26/20	major_frequency=9.787e-01	minor_base=C	minor_cov=1/0	new_cov=26/20	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=27/21
RA	218	.	NC_000913	1111727	0	C	T	consensus_score=247.9	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	219	.	NC_000913	1111728	0	C	T	consensus_score=247.2	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	220	.	NC_000913	1123556	0	C	T	consensus_score=218.0	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	221	.	NC_000913	1169836	0	A	G	consensus_score=210.6	frequency=1	major_base=G	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	222	.	NC_000913	1189980	0	A	G	consensus_score=303.5	frequency=1	major_base=G	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	223	.	NC_000913	1196220	0	C	T	consensus_score=115.5	frequency=1	major_base=T	major_cov=15/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/26
RA	224	.	NC_000913	1196232	0	C	T	consensus_score=101.9	frequency=1	major_base=T	major_cov=15/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/22
RA	225	.	NC_000913	1196245	0	T	C	consensus_score=99.7	frequency=1	major_base=C	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	226	.	NC_000913	1196247	0	A	G	consensus_score=101.4	frequency=1	major_base=G	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	227	.	NC_000913	1196277	0	C	T	consensus_score=65.8	frequency=1	major_base=T	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	228	.	NC_000913	1196280	0	G	C	consensus_score=65.0	frequency=1	major_base=C	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	229	.	NC_000913	1196283	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=68.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=11/16	major_frequency=9.643e-01	minor_base=T	minor_cov=0/1	new_cov=11/16	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	230	.	NC_000913	1196292	0	C	T	consensus_score=63.5	frequency=1	major_base=T	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	231	.	NC_000913	1196304	0	G	A	consensus_score=61.2	frequency=1	major_base=A	major_cov=10/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/16
RA	232	.	NC_000913	1196316	0	T	A	consensus_score=53.5	deleted=1	frequency=1	major_base=A	major_cov=9/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/15
RA	233	.	NC_000913	1196325	0	A	G	consensus_score=41.0	deleted=1	frequency=1	major_base=G	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	234	.	NC_000913	1196352	0	C	A	consensus_score=29.1	deleted=1	frequency=1	major_base=A	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	235	.	NC_000913	1272420	0	C	A	bias_e_value=11.8791	bias_p_value=2.55924e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.5	fisher_strand_p_value=1.53334e-07	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=29/36	major_frequency=7.222e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=29/36	total_cov=54/36
RA	236	.	NC_000913	1301992	0	A	T	consensus_score=286.7	frequency=1	major_base=T	major_cov=39/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/49
RA	237	.	NC_000913	1306736	0	T	G	consensus_score=293.7	frequency=1	major_base=G	major_cov=50/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/29
RA	238	.	NC_000913	1310770	0	A	G	consensus_score=369.0	frequency=1	major_base=G	major_cov=64/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/34
RA	239	.	NC_000913	1331947	0	C	T	consensus_score=270.6	frequency=1	major_base=T	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	240	.	NC_000913	1337394	0	A	G	consensus_score=258.7	frequency=1	major_base=G	major_cov=47/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/24
RA	241	.	NC_000913	1357202	0	C	T	consensus_score=255.6	frequency=1	major_base=T	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	242	.	NC_000913	1358859	0	T	C	consensus_score=314.2	frequency=1	major_base=C	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	243	.	NC_000913	1401737	0	C	A	bias_e_value=33.7128	bias_p_value=7.2631e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.9	fisher_strand_p_value=4.66223e-07	frequency=2.262e-01	ks_quality_p_value=1	major_base=C	major_cov=25/40	major_frequency=7.738e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.262e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=25/40	total_cov=44/40
RA	244	.	NC_000913	1412897	0	G	A	consensus_score=340.8	frequency=1	major_base=A	major_cov=62/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/40
RA	245	.	NC_000913	1428087	0	C	T	consensus_score=174.5	frequency=1	major_base=T	major_cov=22/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/34
RA	246	.	NC_000913	1466210	0	G	A	bias_e_value=637341	bias_p_value=0.137309	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.6	fisher_strand_p_value=0.039631	frequency=2.051e-01	ks_quality_p_value=0.772226	major_base=G	major_cov=19/43	major_frequency=7.949e-01	minor_base=A	minor_cov=10/6	new_cov=10/6	polymorphism_frequency=2.051e-01	polymorphism_score=38.2	prediction=polymorphism	ref_cov=19/43	total_cov=29/49
RA	247	.	NC_000913	1466276	0	T	C	bias_e_value=2125910	bias_p_value=0.458007	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.8	fisher_strand_p_value=0.162628	frequency=2.292e-01	ks_quality_p_value=1	major_base=T	major_cov=11/26	major_frequency=7.708e-01	minor_base=C	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.292e-01	polymorphism_score=20.5	prediction=polymorphism	ref_cov=11/26	total_cov=17/31
RA	248	.	NC_000913	1466280	0	A	C	bias_e_value=2165660	bias_p_value=0.466572	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.4	fisher_strand_p_value=0.167381	frequency=2.826e-01	ks_quality_p_value=1	major_base=A	major_cov=9/24	major_frequency=7.174e-01	minor_base=C	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.826e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=9/24	total_cov=16/30
RA	249	.	NC_000913	1466432	0	A	G	bias_e_value=3140480	bias_p_value=0.676587	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.8	fisher_strand_p_value=0.367824	frequency=3.137e-01	ks_quality_p_value=0.850999	major_base=A	major_cov=19/16	major_frequency=6.863e-01	minor_base=G	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=3.137e-01	polymorphism_score=38.3	prediction=polymorphism	ref_cov=19/16	total_cov=25/26
RA	250	.	NC_000913	1466438	0	T	G	bias_e_value=2681880	bias_p_value=0.577785	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.3	fisher_strand_p_value=0.236706	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=19/15	major_frequency=6.667e-01	minor_base=G	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=3.333e-01	polymorphism_score=37.4	prediction=polymorphism	ref_cov=19/15	total_cov=25/26
RA	251	.	NC_000913	1502770	0	T	C	bias_e_value=243.271	bias_p_value=5.24103e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.9	fisher_strand_p_value=3.89499e-06	frequency=2.609e-01	ks_quality_p_value=1	major_base=T	major_cov=30/21	major_frequency=7.391e-01	minor_base=C	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.609e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=30/21	total_cov=30/39
RA	252	.	NC_000913	1502772	0	G	A	bias_e_value=527.46	bias_p_value=0.000113636	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.4	fisher_strand_p_value=9.00616e-06	frequency=2.647e-01	ks_quality_p_value=1	major_base=G	major_cov=29/21	major_frequency=7.353e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.647e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=29/21	total_cov=29/39
RA	253	.	NC_000913	1580217	0	C	A	bias_e_value=0.000373849	bias_p_value=8.05423e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.3	fisher_strand_p_value=2.92259e-12	frequency=2.455e-01	ks_quality_p_value=1	major_base=C	major_cov=23/60	major_frequency=7.545e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.455e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=23/60	total_cov=50/61
RA	254	.	NC_000913	1610076	0	T	G	consensus_score=285.2	frequency=1	major_base=G	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	255	.	NC_000913	1610440	0	C	T	consensus_score=245.0	frequency=1	major_base=T	major_cov=25/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/44
RA	256	.	NC_000913	1643679	0	A	T	consensus_score=252.9	frequency=1	major_base=T	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	257	.	NC_000913	1652331	0	T	C	consensus_score=375.6	frequency=1	major_base=C	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	258	.	NC_000913	1721136	0	C	T	consensus_score=237.3	frequency=1	major_base=T	major_cov=24/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/46
RA	259	.	NC_000913	1738377	0	C	T	consensus_score=124.0	frequency=1	major_base=T	major_cov=15/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	260	.	NC_000913	1776715	0	A	T	bias_e_value=3546960	bias_p_value=0.764159	consensus_score=271.3	fisher_strand_p_value=0.397436	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/30	major_frequency=9.872e-01	minor_base=G	minor_cov=0/1	new_cov=47/30	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/31
RA	261	.	NC_000913	1856968	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=317.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=37/52	major_frequency=9.889e-01	minor_base=G	minor_cov=0/1	new_cov=37/52	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/53
RA	262	.	NC_000913	1894839	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=304.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=45/36	major_frequency=9.878e-01	minor_base=T	minor_cov=1/0	new_cov=45/36	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=46/36
RA	263	.	NC_000913	1975224	0	G	A	consensus_score=221.1	frequency=1	major_base=A	major_cov=31/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	264	.	NC_000913	1987499	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=192.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/25	major_frequency=9.831e-01	minor_base=C	minor_cov=1/0	new_cov=33/25	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/25
RA	265	.	NC_000913	2003276	0	A	C	consensus_score=309.1	frequency=1	major_base=C	major_cov=31/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/51
RA	266	.	NC_000913	2003462	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=278.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=39/39	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=39/39	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=40/39
RA	267	.	NC_000913	2040433	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=289.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/46	major_frequency=9.878e-01	minor_base=G	minor_cov=0/1	new_cov=35/46	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	268	.	NC_000913	2073613	0	G	T	bias_e_value=876.643	bias_p_value=0.000188864	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.5	fisher_strand_p_value=1.56542e-05	frequency=2.931e-01	ks_quality_p_value=1	major_base=G	major_cov=24/17	major_frequency=7.069e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.931e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=24/17	total_cov=24/34
RA	269	.	NC_000913	2083233	0	G	A	bias_e_value=1476.59	bias_p_value=0.000318117	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.6	fisher_strand_p_value=2.76744e-05	frequency=2.429e-01	ks_quality_p_value=1	major_base=G	major_cov=29/24	major_frequency=7.571e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.429e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=29/24	total_cov=29/41
RA	270	.	NC_000913	2173363	0	C	.	bias_e_value=4577730	bias_p_value=0.986229	consensus_score=286.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.838698	major_base=.	major_cov=27/34	major_frequency=9.683e-01	minor_base=C	minor_cov=1/1	new_cov=27/34	polymorphism_frequency=9.683e-01	polymorphism_score=1.7	prediction=consensus	ref_cov=1/1	total_cov=28/35
RA	271	.	NC_000913	2173364	0	C	.	consensus_score=302.5	frequency=1	major_base=.	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	272	.	NC_000913	2175991	0	T	A	consensus_score=219.6	frequency=1	major_base=A	major_cov=37/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/28
RA	273	.	NC_000913	2188087	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=375.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/51	major_frequency=9.712e-01	minor_base=A	minor_cov=2/1	new_cov=50/51	polymorphism_frequency=9.712e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=52/52
RA	274	.	NC_000913	2263441	0	C	.	consensus_score=353.2	frequency=1	major_base=.	major_cov=50/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/22
RA	275	.	NC_000913	2288418	0	G	T	bias_e_value=0.0102087	bias_p_value=2.19936e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.7	fisher_strand_p_value=9.11915e-11	frequency=3.051e-01	ks_quality_p_value=1	major_base=G	major_cov=47/35	major_frequency=6.949e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.051e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=47/35	total_cov=47/71
RA	276	.	NC_000913	2384808	0	C	T	bias_e_value=3477560	bias_p_value=0.749206	consensus_score=257.1	fisher_strand_p_value=0.381579	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/28	major_frequency=9.868e-01	minor_base=C	minor_cov=0/1	new_cov=47/28	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/29
RA	277	.	NC_000913	2410419	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=272.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/33	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=45/33	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	278	.	NC_000913	2465016	0	C	A	bias_e_value=1.56151	bias_p_value=3.36414e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.0	fisher_strand_p_value=1.78554e-08	frequency=2.476e-01	ks_quality_p_value=1	major_base=C	major_cov=33/46	major_frequency=7.524e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.476e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=33/46	total_cov=59/46
RA	279	.	NC_000913	2484827	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=357.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/53	major_frequency=9.904e-01	minor_base=C	minor_cov=0/1	new_cov=50/53	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=50/54
RA	280	.	NC_000913	2647027	0	G	A	bias_e_value=145996	bias_p_value=0.0314534	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.2	fisher_strand_p_value=0.00499279	frequency=2.034e-01	ks_quality_p_value=1	major_base=G	major_cov=20/27	major_frequency=7.966e-01	minor_base=A	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=2.034e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=20/27	total_cov=20/39
RA	281	.	NC_000913	2700747	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=338.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/48	major_frequency=9.897e-01	minor_base=C	minor_cov=1/0	new_cov=48/48	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	282	.	NC_000913	2748396	0	G	A	consensus_score=287.8	frequency=1	major_base=A	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	283	.	NC_000913	2756976	0	G	A	consensus_score=316.8	frequency=1	major_base=A	major_cov=42/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/52
RA	284	.	NC_000913	2780060	0	G	A	consensus_score=280.3	frequency=1	major_base=A	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	285	.	NC_000913	2792209	0	G	A	consensus_score=149.9	frequency=1	major_base=A	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	286	.	NC_000913	2800435	0	G	A	consensus_score=224.2	frequency=1	major_base=A	major_cov=45/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/23
RA	287	.	NC_000913	2810925	0	G	A	consensus_score=280.6	frequency=1	major_base=A	major_cov=29/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/48
RA	288	.	NC_000913	2815937	0	G	T	bias_e_value=0.0956361	bias_p_value=2.06039e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.0	fisher_strand_p_value=9.46056e-10	frequency=2.672e-01	ks_quality_p_value=1	major_base=G	major_cov=49/36	major_frequency=7.328e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.672e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=49/36	total_cov=49/67
RA	289	.	NC_000913	2817850	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=164.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/36	major_frequency=8.852e-01	minor_base=G	minor_cov=2/5	new_cov=18/36	polymorphism_frequency=8.852e-01	polymorphism_score=7.7	prediction=consensus	ref_cov=2/5	total_cov=20/41
RA	290	.	NC_000913	2825328	0	G	A	consensus_score=149.6	frequency=1	major_base=A	major_cov=31/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/16
RA	291	.	NC_000913	2841238	0	G	A	consensus_score=320.6	frequency=1	major_base=A	major_cov=38/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/52
RA	292	.	NC_000913	2863773	0	C	T	consensus_score=185.3	frequency=1	major_base=T	major_cov=19/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/37
RA	293	.	NC_000913	2878077	0	C	T	consensus_score=170.6	frequency=1	major_base=T	major_cov=29/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/23
RA	294	.	NC_000913	2889365	0	C	T	consensus_score=165.6	frequency=1	major_base=T	major_cov=21/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/30
RA	295	.	NC_000913	2905825	0	C	T	consensus_score=386.2	frequency=1	major_base=T	major_cov=44/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/68
RA	296	.	NC_000913	2926292	0	C	T	consensus_score=293.6	frequency=1	major_base=T	major_cov=50/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/32
RA	297	.	NC_000913	3054886	0	G	T	bias_e_value=3.18732	bias_p_value=6.86678e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.9	fisher_strand_p_value=3.79662e-08	frequency=2.174e-01	ks_quality_p_value=1	major_base=G	major_cov=25/47	major_frequency=7.826e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.174e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=25/47	total_cov=45/47
RA	298	.	NC_000913	3054894	0	G	T	bias_e_value=68.1745	bias_p_value=1.46876e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.5	fisher_strand_p_value=9.90741e-07	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=18/45	major_frequency=7.500e-01	minor_base=T	minor_cov=19/2	new_cov=19/2	polymorphism_frequency=2.500e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=18/45	total_cov=37/47
RA	299	.	NC_000913	3088010	0	C	T	consensus_score=408.0	frequency=1	major_base=T	major_cov=67/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/52
RA	300	.	NC_000913	3088011	0	C	T	consensus_score=402.3	frequency=1	major_base=T	major_cov=67/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/52
RA	301	.	NC_000913	3336411	0	G	A	consensus_score=291.6	frequency=1	major_base=A	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	302	.	NC_000913	3336412	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=248.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/43	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=35/43	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	303	.	NC_000913	3354132	0	C	A	bias_e_value=4588.04	bias_p_value=0.000988451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.4	fisher_strand_p_value=9.64692e-05	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=47/40	major_frequency=7.500e-01	minor_base=A	minor_cov=27/2	new_cov=27/2	polymorphism_frequency=2.500e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=47/40	total_cov=74/42
RA	304	.	NC_000913	3367944	0	G	A	consensus_score=261.9	frequency=1	major_base=A	major_cov=45/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	305	.	NC_000913	3388041	0	T	G	consensus_score=218.0	frequency=1	major_base=G	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	306	.	NC_000913	3399929	0	A	T	consensus_score=269.6	frequency=1	major_base=T	major_cov=30/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/53
RA	307	.	NC_000913	3421921	0	C	A	consensus_score=250.6	frequency=1	major_base=A	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	308	.	NC_000913	3436697	0	G	A	consensus_score=240.9	frequency=1	major_base=A	major_cov=39/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/31
RA	309	.	NC_000913	3449779	0	G	A	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=257.9	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/44	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=32/44	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/44
RA	310	.	NC_000913	3468768	0	C	T	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=269.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997422	major_base=T	major_cov=41/42	major_frequency=9.881e-01	minor_base=C	minor_cov=1/0	new_cov=41/42	polymorphism_frequency=9.881e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=1/0	total_cov=42/42
RA	311	.	NC_000913	3474425	0	T	C	consensus_score=315.2	frequency=1	major_base=C	major_cov=55/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/30
RA	312	.	NC_000913	3543877	0	G	A	consensus_score=204.6	frequency=1	major_base=A	major_cov=23/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/33
RA	313	.	NC_000913	3560455	1	.	G	bias_e_value=3846000	bias_p_value=0.828585	consensus_score=241.6	fisher_strand_p_value=0.485294	frequency=1	ks_quality_p_value=0.97872	major_base=G	major_cov=32/35	major_frequency=9.853e-01	minor_base=A	minor_cov=1/0	new_cov=32/35	polymorphism_frequency=9.853e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	314	.	NC_000913	3593181	0	G	T	bias_e_value=0.0912253	bias_p_value=1.96536e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.9	fisher_strand_p_value=9.00378e-10	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=43/21	major_frequency=7.191e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.809e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=43/21	total_cov=43/46
RA	315	.	NC_000913	3623537	0	G	A	bias_e_value=158.633	bias_p_value=3.41761e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.7	fisher_strand_p_value=2.45569e-06	frequency=2.178e-01	ks_quality_p_value=1	major_base=G	major_cov=41/38	major_frequency=7.822e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.178e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=41/38	total_cov=41/64
RA	316	.	NC_000913	3629921	0	C	T	consensus_score=177.8	frequency=1	major_base=T	major_cov=14/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/41
RA	317	.	NC_000913	3682515	0	C	T	consensus_score=248.1	frequency=1	major_base=T	major_cov=44/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/31
RA	318	.	NC_000913	3696909	0	G	A	consensus_score=446.1	frequency=1	major_base=A	major_cov=53/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/70
RA	319	.	NC_000913	3707947	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=383.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=81/34	major_frequency=9.914e-01	minor_base=C	minor_cov=1/0	new_cov=81/34	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=82/34
RA	320	.	NC_000913	3725176	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=265.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=39/35	major_frequency=9.737e-01	minor_base=A	minor_cov=1/1	new_cov=39/35	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	321	.	NC_000913	3761230	0	G	A	consensus_score=191.6	frequency=1	major_base=A	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	322	.	NC_000913	3768435	0	C	A	bias_e_value=0.00483776	bias_p_value=1.04225e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.8	fisher_strand_p_value=4.18631e-11	frequency=2.562e-01	ks_quality_p_value=1	major_base=C	major_cov=28/62	major_frequency=7.438e-01	minor_base=A	minor_cov=30/1	new_cov=30/1	polymorphism_frequency=2.562e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=28/62	total_cov=58/63
RA	323	.	NC_000913	3771979	0	G	T	consensus_score=373.8	frequency=1	major_base=T	major_cov=54/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/57
RA	324	.	NC_000913	3815883	1	.	C	bias_e_value=4641300	bias_p_value=0.999924	consensus_score=274.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.987728	major_base=C	major_cov=34/37	major_frequency=9.726e-01	minor_base=A	minor_cov=1/1	new_cov=34/37	polymorphism_frequency=9.726e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/1	total_cov=36/39
RA	325	.	NC_000913	3823162	0	C	T	consensus_score=224.3	frequency=1	major_base=T	major_cov=21/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/51
RA	326	.	NC_000913	3869637	0	C	A	consensus_score=170.0	frequency=1	major_base=A	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	327	.	NC_000913	3878536	0	G	A	consensus_score=193.0	frequency=1	major_base=A	major_cov=15/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/37
RA	328	.	NC_000913	3883678	0	G	A	bias_e_value=3684610	bias_p_value=0.793815	consensus_score=223.4	fisher_strand_p_value=0.432836	frequency=1	ks_quality_p_value=0.995938	major_base=A	major_cov=38/28	major_frequency=9.851e-01	minor_base=G	minor_cov=0/1	new_cov=38/28	polymorphism_frequency=9.851e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=38/29
RA	329	.	NC_000913	3911533	0	C	A	bias_e_value=6.78759e-10	bias_p_value=1.46232e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.0	fisher_strand_p_value=3.55111e-18	frequency=4.412e-01	ks_quality_p_value=1	major_base=C	major_cov=26/50	major_frequency=5.588e-01	minor_base=A	minor_cov=60/0	new_cov=60/0	polymorphism_frequency=4.412e-01	polymorphism_score=29.5	prediction=polymorphism	ref_cov=26/50	total_cov=86/50
RA	330	.	NC_000913	3912074	0	G	A	consensus_score=207.2	frequency=1	major_base=A	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	331	.	NC_000913	3931069	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=380.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/57	major_frequency=9.908e-01	minor_base=C	minor_cov=0/1	new_cov=51/57	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/58
RA	332	.	NC_000913	3955304	0	C	T	consensus_score=202.4	frequency=1	major_base=T	major_cov=22/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/36
RA	333	.	NC_000913	3988115	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=181.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/28	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=23/28	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/29
RA	334	.	NC_000913	3993531	0	T	C	consensus_score=311.8	frequency=1	major_base=C	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	335	.	NC_000913	3996049	0	T	A	consensus_score=173.6	frequency=1	major_base=A	major_cov=25/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/25
RA	336	.	NC_000913	4011802	0	C	T	bias_e_value=4641460	bias_p_value=0.999959	consensus_score=206.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991001	major_base=T	major_cov=21/38	major_frequency=9.833e-01	minor_base=C	minor_cov=0/1	new_cov=21/38	polymorphism_frequency=9.833e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=21/39
RA	337	.	NC_000913	4084903	0	T	G	consensus_score=205.5	frequency=1	major_base=G	major_cov=20/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/38
RA	338	.	NC_000913	4092703	0	A	G	consensus_score=213.9	frequency=1	major_base=G	major_cov=23/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	339	.	NC_000913	4124455	0	A	G	consensus_score=369.3	frequency=1	major_base=G	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	340	.	NC_000913	4166849	0	G	A	bias_e_value=3500630	bias_p_value=0.754178	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.4	fisher_strand_p_value=0.476752	frequency=5.294e-01	ks_quality_p_value=0.811273	major_base=A	major_cov=7/11	major_frequency=5.294e-01	minor_base=G	minor_cov=4/12	new_cov=7/11	polymorphism_frequency=5.294e-01	polymorphism_score=48.8	prediction=polymorphism	ref_cov=4/12	total_cov=11/23
RA	341	.	NC_000913	4210041	0	G	A	consensus_score=143.3	frequency=1	major_base=A	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	342	.	NC_000913	4223638	0	T	C	bias_e_value=2330430	bias_p_value=0.502069	consensus_score=307.6	fisher_strand_p_value=0.187918	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=36/49	major_frequency=9.770e-01	minor_base=A	minor_cov=2/0	new_cov=36/49	polymorphism_frequency=9.770e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/49
RA	343	.	NC_000913	4257353	0	G	A	consensus_score=207.7	frequency=1	major_base=A	major_cov=35/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/28
RA	344	.	NC_000913	4257526	0	G	A	consensus_score=257.3	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	345	.	NC_000913	4261450	0	G	A	consensus_score=406.0	frequency=1	major_base=A	major_cov=38/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/72
RA	346	.	NC_000913	4261924	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=162.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/24	major_frequency=9.796e-01	minor_base=C	minor_cov=1/0	new_cov=24/24	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	347	.	NC_000913	4296190	0	A	G	bias_e_value=1688940	bias_p_value=0.363865	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.7	fisher_strand_p_value=0.115321	frequency=3.600e-01	ks_quality_p_value=0.99778	major_base=A	major_cov=5/11	major_frequency=6.400e-01	minor_base=G	minor_cov=6/3	new_cov=6/3	polymorphism_frequency=3.600e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=5/11	total_cov=11/14
RA	348	.	NC_000913	4296191	0	A	C	bias_e_value=847037	bias_p_value=0.182486	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.3	fisher_strand_p_value=0.0809764	frequency=3.200e-01	ks_quality_p_value=0.547522	major_base=A	major_cov=5/12	major_frequency=6.800e-01	minor_base=C	minor_cov=6/2	new_cov=6/2	polymorphism_frequency=3.200e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=5/12	total_cov=11/14
RA	349	.	NC_000913	4296380	1	.	C	bias_e_value=4641250	bias_p_value=0.999913	consensus_score=216.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986866	major_base=C	major_cov=35/26	major_frequency=9.839e-01	minor_base=A	minor_cov=1/0	new_cov=35/26	polymorphism_frequency=9.839e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=1/0	total_cov=37/26
RA	350	.	NC_000913	4296380	2	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=218.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=36/26	major_frequency=9.841e-01	minor_base=.	minor_cov=1/0	new_cov=36/26	polymorphism_frequency=9.841e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=37/26
RA	351	.	NC_000913	4337390	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=453.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=65/64	major_frequency=9.923e-01	minor_base=C	minor_cov=0/1	new_cov=65/64	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=65/65
RA	352	.	NC_000913	4338916	0	C	T	consensus_score=325.5	frequency=1	major_base=T	major_cov=51/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/39
RA	353	.	NC_000913	4349993	0	C	T	consensus_score=313.0	frequency=1	major_base=T	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	354	.	NC_000913	4375354	0	G	A	consensus_score=247.3	frequency=1	major_base=A	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	355	.	NC_000913	4380367	0	C	T	consensus_score=323.8	frequency=1	major_base=T	major_cov=49/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/41
RA	356	.	NC_000913	4425688	0	C	A	consensus_score=210.9	frequency=1	major_base=A	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	357	.	NC_000913	4425696	0	C	A	consensus_score=210.3	frequency=1	major_base=A	major_cov=29/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/33
RA	358	.	NC_000913	4436956	0	C	T	consensus_score=203.7	frequency=1	major_base=T	major_cov=29/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/30
RA	359	.	NC_000913	4436957	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=199.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/29	major_frequency=9.831e-01	minor_base=C	minor_cov=0/1	new_cov=29/29	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/30
RA	360	.	NC_000913	4532409	0	T	G	consensus_score=236.0	frequency=1	major_base=G	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	361	.	NC_000913	4546601	0	C	T	consensus_score=343.2	frequency=1	major_base=T	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	362	.	NC_000913	4578548	0	G	A	consensus_score=444.0	frequency=1	major_base=A	major_cov=66/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/58
RA	363	.	NC_000913	4585230	0	A	G	bias_e_value=3870550	bias_p_value=0.833873	consensus_score=192.9	fisher_strand_p_value=0.482143	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=26/29	major_frequency=9.821e-01	minor_base=A	minor_cov=1/0	new_cov=26/29	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=27/29
MC	364	.	NC_000913	62379	88274	0	0	left_inside_cov=0	left_outside_cov=58	right_inside_cov=0	right_outside_cov=58
MC	365	.	NC_000913	257908	258683	767	0	left_inside_cov=0	left_outside_cov=112	right_inside_cov=2	right_outside_cov=114
MC	366	.	NC_000913	339199	375417	0	0	left_inside_cov=0	left_outside_cov=71	right_inside_cov=1	right_outside_cov=72
MC	367	.	NC_000913	1196313	1211460	0	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=24	right_outside_cov=29
MC	368	.	NC_000913	1704350	1704739	0	0	left_inside_cov=0	left_outside_cov=78	right_inside_cov=0	right_outside_cov=78
MC	369	.	NC_000913	1978495	1979270	0	767	left_inside_cov=0	left_outside_cov=82	right_inside_cov=0	right_outside_cov=93
MC	370	.	NC_000913	2238416	2238434	0	0	left_inside_cov=0	left_outside_cov=90	right_inside_cov=0	right_outside_cov=90
MC	371	.	NC_000913	2259357	2262908	0	0	left_inside_cov=0	left_outside_cov=90	right_inside_cov=0	right_outside_cov=90
MC	372	.	NC_000913	3423890	3426657	343	2418	left_inside_cov=23	left_outside_cov=26	right_inside_cov=21	right_outside_cov=26
MC	373	.	NC_000913	3708467	3708634	0	0	left_inside_cov=0	left_outside_cov=49	right_inside_cov=20	right_outside_cov=69
MC	374	.	NC_000913	3762435	3765107	1639	1027	left_inside_cov=25	left_outside_cov=26	right_inside_cov=24	right_outside_cov=26
JC	375	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=69	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=295	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=292	max_left_minus=292	max_left_plus=279	max_min_left=147	max_min_left_minus=147	max_min_left_plus=140	max_min_right=145	max_min_right_minus=145	max_min_right_plus=116	max_pos_hash_score=590	max_right=287	max_right_minus=287	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.54	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=118
JC	376	.	NC_000913	62378	-1	NC_000913	88275	1	0	alignment_overlap=0	coverage_minus=28	coverage_plus=29	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__62378__-1__NC_000913__88275__1__0____300__300__0__0	max_left=277	max_left_minus=277	max_left_plus=268	max_min_left=147	max_min_left_minus=147	max_min_left_plus=129	max_min_right=149	max_min_right_minus=126	max_min_right_plus=149	max_pos_hash_score=590	max_right=292	max_right_minus=292	max_right_plus=291	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.74	new_junction_read_count=58	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=57
JC	377	.	NC_000913	172277	-1	NC_000913	172759	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.456e-02	junction_possible_overlap_registers=285	key=NC_000913__172277__-1__NC_000913__172749__1__10____300__300__0__0	max_left=86	max_left_minus=86	max_left_plus=86	max_min_left=86	max_min_left_minus=86	max_min_left_plus=86	max_min_right=35	max_min_right_minus=35	max_min_right_plus=0	max_pos_hash_score=570	max_right=97	max_right_minus=97	max_right_plus=97	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.456e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=10	side_1_possible_overlap_registers=295	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=3
JC	378	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=50	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=287	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=282	max_min_left=140	max_min_left_minus=133	max_min_left_plus=140	max_min_right=145	max_min_right_minus=145	max_min_right_plus=144	max_pos_hash_score=574	max_right=279	max_right_minus=279	max_right_plus=279	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.48	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=112
JC	379	.	NC_000913	257908	1	NC_000913	922386	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=25	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__257908__1__NC_000913__922386__-1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=277	max_min_left=149	max_min_left_minus=149	max_min_left_plus=102	max_min_right=140	max_min_right_minus=140	max_min_right_plus=122	max_pos_hash_score=590	max_right=283	max_right_minus=281	max_right_plus=283	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.89	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=69
JC	380	.	NC_000913	258675	-1	NC_000913	922378	1	0	alignment_overlap=1	coverage_minus=41	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__258675__-1__NC_000913__922377__1__1____300__300__1__0	max_left=296	max_left_minus=283	max_left_plus=296	max_min_left=147	max_min_left_minus=147	max_min_left_plus=117	max_min_right=147	max_min_right_minus=147	max_min_right_plus=124	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=287	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.99	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=77
JC	381	.	NC_000913	339198	-1	NC_000913	375418	1	0	alignment_overlap=4	coverage_minus=42	coverage_plus=29	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__339198__-1__NC_000913__375414__1__4____300__300__0__0	max_left=295	max_left_minus=292	max_left_plus=295	max_min_left=139	max_min_left_minus=139	max_min_left_plus=123	max_min_right=140	max_min_right_minus=130	max_min_right_plus=140	max_pos_hash_score=582	max_right=282	max_right_minus=282	max_right_plus=274	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.92	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71
JC	382	.	NC_000913	381260	1	NC_000913	789812	1	0	alignment_overlap=0	coverage_minus=50	coverage_plus=28	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__381260__1__NC_000913__789812__1__0____300__300__1__0	max_left=297	max_left_minus=297	max_left_plus=297	max_min_left=145	max_min_left_minus=145	max_min_left_plus=93	max_min_right=142	max_min_right_minus=142	max_min_right_plus=124	max_pos_hash_score=590	max_right=294	max_right_minus=294	max_right_plus=286	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=78
JC	383	.	NC_000913	381260	1	NC_000913	1093485	-1	0	alignment_overlap=2	coverage_minus=53	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__381260__1__NC_000913__1093487__-1__2____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=295	max_min_left=143	max_min_left_minus=143	max_min_left_plus=140	max_min_right=137	max_min_right_minus=137	max_min_right_plus=135	max_pos_hash_score=586	max_right=297	max_right_minus=297	max_right_plus=294	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.14	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=88
JC	384	.	NC_000913	382590	-1	NC_000913	789816	-1	0	alignment_overlap=2	coverage_minus=49	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__382590__-1__NC_000913__789818__-1__2____300__300__1__0	max_left=294	max_left_minus=277	max_left_plus=294	max_min_left=148	max_min_left_minus=118	max_min_left_plus=148	max_min_right=141	max_min_right_minus=141	max_min_right_plus=125	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=287	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=95	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=92
JC	385	.	NC_000913	542503	-1	NC_000913	542639	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.209e-02	junction_possible_overlap_registers=291	key=NC_000913__542503__-1__NC_000913__542635__1__4____300__300__0__0	max_left=84	max_left_minus=84	max_left_plus=80	max_min_left=84	max_min_left_minus=84	max_min_left_plus=80	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=582	max_right=209	max_right_minus=209	max_right_plus=113	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.209e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=4	side_1_possible_overlap_registers=295	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=50	side_2_redundant=0	total_non_overlap_reads=3
JC	386	.	NC_000913	696466	-1	NC_000913	696902	1	0	alignment_overlap=10	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.133e-02	junction_possible_overlap_registers=285	key=NC_000913__696466__-1__NC_000913__696892__1__10____300__300__0__0	max_left=160	max_left_minus=160	max_left_plus=111	max_min_left=107	max_min_left_minus=107	max_min_left_plus=107	max_min_right=93	max_min_right_minus=93	max_min_right_plus=93	max_pos_hash_score=570	max_right=288	max_right_minus=117	max_right_plus=288	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=9.133e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=10	side_1_possible_overlap_registers=295	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=7
JC	387	.	NC_000913	721951	-1	NC_000913	722313	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.482e-02	junction_possible_overlap_registers=283	key=NC_000913__721951__-1__NC_000913__722301__1__12____300__300__0__0	max_left=247	max_left_minus=247	max_left_plus=154	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=62	max_min_right_minus=62	max_min_right_plus=62	max_pos_hash_score=566	max_right=62	max_right_minus=62	max_right_plus=62	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.482e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=12	side_1_possible_overlap_registers=295	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=3
JC	388	.	NC_000913	781222	-1	NC_000913	2521485	1	0	alignment_overlap=18	coverage_minus=6	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.247e-01	junction_possible_overlap_registers=277	key=NC_000913__781222__-1__NC_000913__2521467__1__18____300__300__0__0	max_left=211	max_left_minus=211	max_left_plus=206	max_min_left=6	max_min_left_minus=6	max_min_left_plus=0	max_min_right=37	max_min_right_minus=37	max_min_right_plus=35	max_pos_hash_score=554	max_right=276	max_right_minus=276	max_right_plus=35	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.12	new_junction_read_count=9	polymorphism_frequency=1.247e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=18	side_1_possible_overlap_registers=295	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=8
JC	389	.	NC_000913	781224	-1	NC_000913	781655	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.848e-02	junction_possible_overlap_registers=294	key=NC_000913__781224__-1__NC_000913__781654__1__1____300__300__0__0	max_left=225	max_left_minus=225	max_left_plus=95	max_min_left=95	max_min_left_minus=95	max_min_left_plus=95	max_min_right=66	max_min_right_minus=66	max_min_right_plus=0	max_pos_hash_score=588	max_right=145	max_right_minus=145	max_right_plus=145	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.848e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=1	side_1_possible_overlap_registers=295	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=3
JC	390	.	NC_000913	1093481	1	NC_000913	1651548	-1	0	alignment_overlap=0	coverage_minus=45	coverage_plus=34	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1093481__1__NC_000913__1651548__-1__0____300__300__0__1	max_left=288	max_left_minus=242	max_left_plus=288	max_min_left=148	max_min_left_minus=148	max_min_left_plus=119	max_min_right=150	max_min_right_minus=150	max_min_right_plus=149	max_pos_hash_score=590	max_right=284	max_right_minus=284	max_right_plus=261	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.05	new_junction_read_count=82	polymorphism_frequency=9.758e-01	pos_hash_score=48	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=79
JC	391	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=58	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=289	max_left_plus=294	max_min_left=146	max_min_left_minus=133	max_min_left_plus=146	max_min_right=140	max_min_right_minus=139	max_min_right_plus=140	max_pos_hash_score=582	max_right=295	max_right_minus=276	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.59	new_junction_read_count=122	polymorphism_frequency=9.960e-01	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=4	side_1_possible_overlap_registers=295	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=122
JC	392	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=34	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=294	max_left_minus=278	max_left_plus=294	max_min_left=146	max_min_left_minus=146	max_min_left_plus=115	max_min_right=148	max_min_right_minus=148	max_min_right_plus=145	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=296	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=77
JC	393	.	NC_000913	1651548	-1	NC_000913	1651855	-1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1651548__-1__NC_000913__1651855__-1__0____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=289	max_min_left=142	max_min_left_minus=142	max_min_left_plus=110	max_min_right=140	max_min_right_minus=140	max_min_right_plus=129	max_pos_hash_score=590	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=1.00	new_junction_read_count=78	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	394	.	NC_000913	1651851	1	NC_000913	2070271	-1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=65	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1651851__1__NC_000913__2070271__-1__0____300__300__0__1	max_left=292	max_left_minus=289	max_left_plus=292	max_min_left=127	max_min_left_minus=116	max_min_left_plus=127	max_min_right=150	max_min_right_minus=150	max_min_right_plus=143	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.39	new_junction_read_count=108	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=102
JC	395	.	NC_000913	1704349	-1	NC_000913	1704740	1	0	alignment_overlap=2	coverage_minus=33	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1704349__-1__NC_000913__1704738__1__2____300__300__0__0	max_left=287	max_left_minus=287	max_left_plus=287	max_min_left=128	max_min_left_minus=127	max_min_left_plus=128	max_min_right=135	max_min_right_minus=135	max_min_right_plus=131	max_pos_hash_score=586	max_right=291	max_right_minus=289	max_right_plus=291	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.01	new_junction_read_count=78	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	396	.	NC_000913	1950744	-1	NC_000913	1951075	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.405e-02	junction_possible_overlap_registers=283	key=NC_000913__1950744__-1__NC_000913__1951063__1__12____300__300__0__0	max_left=169	max_left_minus=169	max_left_plus=169	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=67	max_min_right_minus=67	max_min_right_plus=67	max_pos_hash_score=566	max_right=270	max_right_minus=67	max_right_plus=270	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.405e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=12	side_1_possible_overlap_registers=295	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=3
JC	397	.	NC_000913	1979270	-1	NC_000913	4289456	-1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1979270__-1__NC_000913__4289456__-1__0____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=247	max_min_left=149	max_min_left_minus=147	max_min_left_plus=149	max_min_right=145	max_min_right_minus=142	max_min_right_plus=145	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=283	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.12	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85
JC	398	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=294	max_left_minus=281	max_left_plus=294	max_min_left=140	max_min_left_minus=137	max_min_left_plus=140	max_min_right=145	max_min_right_minus=145	max_min_right_plus=120	max_pos_hash_score=590	max_right=292	max_right_minus=260	max_right_plus=292	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.19	new_junction_read_count=93	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=90
JC	399	.	NC_000913	2068941	1	NC_000913	2317414	1	0	alignment_overlap=0	coverage_minus=32	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__2068941__1__NC_000913__2317414__1__0____300__300__1__0	max_left=294	max_left_minus=279	max_left_plus=294	max_min_left=149	max_min_left_minus=149	max_min_left_plus=147	max_min_right=147	max_min_right_minus=140	max_min_right_plus=147	max_pos_hash_score=590	max_right=279	max_right_minus=279	max_right_plus=269	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.94	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	400	.	NC_000913	2238415	-1	NC_000913	2238435	1	0	alignment_overlap=0	coverage_minus=45	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__2238415__-1__NC_000913__2238435__1__0____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=288	max_min_left=140	max_min_left_minus=137	max_min_left_plus=140	max_min_right=149	max_min_right_minus=149	max_min_right_plus=147	max_pos_hash_score=590	max_right=299	max_right_minus=288	max_right_plus=299	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	401	.	NC_000913	2259356	-1	NC_000913	2262909	1	0	alignment_overlap=1	coverage_minus=38	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2259356__-1__NC_000913__2262908__1__1____300__300__0__0	max_left=296	max_left_minus=296	max_left_plus=296	max_min_left=147	max_min_left_minus=137	max_min_left_plus=147	max_min_right=147	max_min_right_minus=147	max_min_right_plus=147	max_pos_hash_score=588	max_right=297	max_right_minus=287	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=89
JC	402	.	NC_000913	2317418	-1	NC_000913	2997691	-1	0	alignment_overlap=1	coverage_minus=37	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2317419__-1__NC_000913__2997691__-1__1____300__300__0__1	max_left=293	max_left_minus=290	max_left_plus=293	max_min_left=145	max_min_left_minus=130	max_min_left_plus=145	max_min_right=142	max_min_right_minus=135	max_min_right_plus=142	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=292	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=90
JC	403	.	NC_000913	2521359	-1	NC_000913	2521516	1	0	alignment_overlap=49	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.176e-02	junction_possible_overlap_registers=246	key=NC_000913__2521359__-1__NC_000913__2521467__1__49____300__300__0__0	max_left=102	max_left_minus=86	max_left_plus=102	max_min_left=102	max_min_left_minus=86	max_min_left_plus=102	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=492	max_right=245	max_right_minus=245	max_right_plus=148	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=6.176e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=49	side_1_possible_overlap_registers=295	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=246	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=4
JC	404	.	NC_000913	2576868	-1	NC_000913	2577226	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.123e-02	junction_possible_overlap_registers=284	key=NC_000913__2576868__-1__NC_000913__2577215__1__11____300__300__0__0	max_left=175	max_left_minus=175	max_left_plus=175	max_min_left=31	max_min_left_minus=0	max_min_left_plus=31	max_min_right=62	max_min_right_minus=62	max_min_right_plus=62	max_pos_hash_score=568	max_right=212	max_right_minus=62	max_right_plus=212	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.123e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=11	side_1_possible_overlap_registers=295	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	405	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=7.032e-02	junction_possible_overlap_registers=270	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=180	max_left_minus=180	max_left_plus=158	max_min_left=104	max_min_left_minus=104	max_min_left_plus=104	max_min_right=106	max_min_right_minus=95	max_min_right_plus=106	max_pos_hash_score=540	max_right=259	max_right_minus=108	max_right_plus=259	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=7.032e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=25	side_1_possible_overlap_registers=295	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.26	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=6
JC	406	.	NC_000913	2877772	-1	NC_000913	2878263	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.207e-02	junction_possible_overlap_registers=284	key=NC_000913__2877772__-1__NC_000913__2878252__1__11____300__300__0__0	max_left=51	max_left_minus=51	max_left_plus=51	max_min_left=51	max_min_left_minus=51	max_min_left_plus=51	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=568	max_right=150	max_right_minus=150	max_right_plus=150	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.207e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=11	side_1_possible_overlap_registers=295	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	407	.	NC_000913	2913392	1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=25	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1	max_left=295	max_left_minus=285	max_left_plus=295	max_min_left=137	max_min_left_minus=127	max_min_left_plus=137	max_min_right=133	max_min_right_minus=125	max_min_right_plus=133	max_pos_hash_score=590	max_right=297	max_right_minus=269	max_right_plus=297	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.87	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=68
JC	408	.	NC_000913	2913396	-1	NC_000913	2996361	1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1	max_left=295	max_left_minus=295	max_left_plus=263	max_min_left=146	max_min_left_minus=146	max_min_left_plus=140	max_min_right=149	max_min_right_minus=133	max_min_right_plus=149	max_pos_hash_score=590	max_right=298	max_right_minus=284	max_right_plus=298	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.05	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=82
JC	409	.	NC_000913	3469013	-1	NC_000913	3469317	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.589e-02	junction_possible_overlap_registers=287	key=NC_000913__3469013__-1__NC_000913__3469309__1__8____300__300__0__0	max_left=120	max_left_minus=120	max_left_plus=98	max_min_left=120	max_min_left_minus=120	max_min_left_plus=98	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=574	max_right=196	max_right_minus=179	max_right_plus=196	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.07	new_junction_read_count=5	polymorphism_frequency=4.589e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.45	side_1_overlap=8	side_1_possible_overlap_registers=295	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.29	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=5
JC	410	.	NC_000913	3584195	-1	NC_000913	4289448	1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=24	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__3584195__-1__NC_000913__4289448__1__0____300__300__1__0	max_left=266	max_left_minus=266	max_left_plus=220	max_min_left=149	max_min_left_minus=149	max_min_left_plus=140	max_min_right=149	max_min_right_minus=148	max_min_right_plus=149	max_pos_hash_score=590	max_right=283	max_right_minus=283	max_right_plus=281	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.83	new_junction_read_count=65	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=61
JC	411	.	NC_000913	3708466	-1	NC_000913	3708635	1	0	alignment_overlap=108	coverage_minus=24	coverage_plus=23	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=187	key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0	max_left=186	max_left_minus=162	max_left_plus=186	max_min_left=75	max_min_left_minus=75	max_min_left_plus=34	max_min_right=93	max_min_right_minus=93	max_min_right_plus=77	max_pos_hash_score=374	max_right=189	max_right_minus=186	max_right_plus=189	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.99	new_junction_read_count=49	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=108	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=187	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=47
JC	412	.	NC_000913	3822646	1	NC_000913	3822651	-1	0	alignment_overlap=0	coverage_minus=25	coverage_plus=34	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=146	max_min_left_minus=146	max_min_left_plus=144	max_min_right=147	max_min_right_minus=119	max_min_right_plus=147	max_pos_hash_score=590	max_right=288	max_right_minus=288	max_right_plus=288	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.76	new_junction_read_count=59	polymorphism_frequency=9.365e-01	pos_hash_score=40	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.08	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=59
JC	413	.	NC_000913	3938983	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__3938983__1__NC_000913__4498181__1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=264	max_min_left=147	max_min_left_minus=132	max_min_left_plus=147	max_min_right=147	max_min_right_minus=128	max_min_right_plus=147	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.08	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=83
JC	414	.	NC_000913	3938987	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__3938987__-1__NC_000913__4499511__-1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=283	max_min_left=143	max_min_left_minus=143	max_min_left_plus=138	max_min_right=144	max_min_right_minus=144	max_min_right_plus=142	max_pos_hash_score=590	max_right=287	max_right_minus=287	max_right_plus=279	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.04	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=81
JC	415	.	NC_000913	4079197	-1	NC_000913	4079636	1	0	alignment_overlap=22	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.355e-02	junction_possible_overlap_registers=273	key=NC_000913__4079197__-1__NC_000913__4079614__1__22____300__300__0__0	max_left=57	max_left_minus=57	max_left_plus=57	max_min_left=22	max_min_left_minus=22	max_min_left_plus=22	max_min_right=52	max_min_right_minus=52	max_min_right_plus=52	max_pos_hash_score=546	max_right=113	max_right_minus=113	max_right_plus=52	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.07	new_junction_read_count=5	polymorphism_frequency=4.355e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.62	side_1_overlap=22	side_1_possible_overlap_registers=295	side_1_read_count=126	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.43	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=5
JC	416	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.752e-02	junction_possible_overlap_registers=206	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=190	max_left_minus=190	max_left_plus=65	max_min_left=65	max_min_left_minus=54	max_min_left_plus=65	max_min_right=21	max_min_right_minus=21	max_min_right_plus=0	max_pos_hash_score=412	max_right=203	max_right_minus=155	max_right_plus=203	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.07	new_junction_read_count=4	polymorphism_frequency=8.752e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=89	side_1_possible_overlap_registers=295	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=4
UN	417	.	NC_000913	15647	16464
UN	418	.	NC_000913	20064	20064
UN	419	.	NC_000913	20072	20278
UN	420	.	NC_000913	20280	20280
UN	421	.	NC_000913	20299	20299
UN	422	.	NC_000913	62379	88274
UN	423	.	NC_000913	224010	224010
UN	424	.	NC_000913	224013	224013
UN	425	.	NC_000913	224016	224016
UN	426	.	NC_000913	224019	224492
UN	427	.	NC_000913	224494	224497
UN	428	.	NC_000913	224499	224499
UN	429	.	NC_000913	224505	224505
UN	430	.	NC_000913	225149	225327
UN	431	.	NC_000913	227270	228394
UN	432	.	NC_000913	257908	258683
UN	433	.	NC_000913	270803	271007
UN	434	.	NC_000913	274248	274863
UN	435	.	NC_000913	274865	274865
UN	436	.	NC_000913	279446	279671
UN	437	.	NC_000913	290918	291141
UN	438	.	NC_000913	315483	315483
UN	439	.	NC_000913	315487	315487
UN	440	.	NC_000913	315489	315491
UN	441	.	NC_000913	315493	315493
UN	442	.	NC_000913	315495	316219
UN	443	.	NC_000913	339199	375417
UN	444	.	NC_000913	381527	381527
UN	445	.	NC_000913	381530	381530
UN	446	.	NC_000913	381532	381533
UN	447	.	NC_000913	381535	381537
UN	448	.	NC_000913	381539	381539
UN	449	.	NC_000913	381541	381541
UN	450	.	NC_000913	381544	382335
UN	451	.	NC_000913	382339	382339
UN	452	.	NC_000913	391967	391971
UN	453	.	NC_000913	391973	391974
UN	454	.	NC_000913	391976	392703
UN	455	.	NC_000913	392705	392705
UN	456	.	NC_000913	392709	392709
UN	457	.	NC_000913	392720	392720
UN	458	.	NC_000913	392737	392738
UN	459	.	NC_000913	526096	526096
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UN	463	.	NC_000913	574861	575505
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UN	467	.	NC_000913	688789	688790
UN	468	.	NC_000913	688796	688796
UN	469	.	NC_000913	1094507	1095224
UN	470	.	NC_000913	1097118	1097118
UN	471	.	NC_000913	1196374	1211413
UN	472	.	NC_000913	1299499	1300697
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UN	474	.	NC_000913	1396970	1396970
UN	475	.	NC_000913	1468165	1468974
UN	476	.	NC_000913	1469546	1470234
UN	477	.	NC_000913	1528551	1528551
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UN	480	.	NC_000913	1528920	1528921
UN	481	.	NC_000913	1634344	1634344
UN	482	.	NC_000913	1651100	1651293
UN	483	.	NC_000913	1651295	1651295
UN	484	.	NC_000913	1651297	1651297
UN	485	.	NC_000913	1704350	1704739
UN	486	.	NC_000913	1978495	1979270
UN	487	.	NC_000913	2067010	2067039
UN	488	.	NC_000913	2069196	2069197
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UN	490	.	NC_000913	2070005	2070005
UN	491	.	NC_000913	2102000	2102663
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UN	501	.	NC_000913	2514540	2515350
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UN	514	.	NC_000913	3186380	3187151
UN	515	.	NC_000913	3187154	3187154
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UN	521	.	NC_000913	3427202	3427202
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UN	524	.	NC_000913	3583701	3583917
UN	525	.	NC_000913	3583920	3583920
UN	526	.	NC_000913	3619517	3619517
UN	527	.	NC_000913	3619521	3619522
UN	528	.	NC_000913	3619525	3620808
UN	529	.	NC_000913	3620819	3620819
UN	530	.	NC_000913	3621369	3622021
UN	531	.	NC_000913	3622054	3622054
UN	532	.	NC_000913	3652293	3652295
UN	533	.	NC_000913	3652308	3652950
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UN	535	.	NC_000913	3708552	3708552
UN	536	.	NC_000913	3762523	3762524
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UN	539	.	NC_000913	3765019	3765019
UN	540	.	NC_000913	3765026	3765026
UN	541	.	NC_000913	3765045	3765045
UN	542	.	NC_000913	3942248	3942248
UN	543	.	NC_000913	3942250	3942250
UN	544	.	NC_000913	3942255	3942255
UN	545	.	NC_000913	3942258	3943152
UN	546	.	NC_000913	3944348	3945295
UN	547	.	NC_000913	4035388	4035388
UN	548	.	NC_000913	4035423	4036845
UN	549	.	NC_000913	4038082	4038418
UN	550	.	NC_000913	4038428	4038428
UN	551	.	NC_000913	4038990	4039110
UN	552	.	NC_000913	4039113	4039115
UN	553	.	NC_000913	4039642	4040322
UN	554	.	NC_000913	4166542	4166574
UN	555	.	NC_000913	4166849	4166849
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UN	557	.	NC_000913	4166923	4167977
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UN	560	.	NC_000913	4208371	4208371
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UN	562	.	NC_000913	4209480	4209480
UN	563	.	NC_000913	4209496	4209496
UN	564	.	NC_000913	4210264	4210264
UN	565	.	NC_000913	4210266	4212841
UN	566	.	NC_000913	4212843	4212844
UN	567	.	NC_000913	4498447	4498448
UN	568	.	NC_000913	4498455	4499242
UN	569	.	NC_000913	4507747	4508429