#=GENOME_DIFF 1.0 #=CREATED 00:14:15 11 Oct 2025 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9621_S34_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9621_S34_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9621_S34_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=REFSEQ /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9621_S34_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9621_S34_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=CONVERTED-BASES 522441754 #=CONVERTED-READS 1769000 #=INPUT-BASES 522552287 #=INPUT-READS 1769378 #=MAPPED-BASES 507007686 #=MAPPED-READS 1717882 DEL 1 366,378 NC_000913 62379 25896 SNP 2 160 NC_000913 89089 A SNP 3 161 NC_000913 89103 C SNP 4 162 NC_000913 89143 G SNP 5 163 NC_000913 89145 T SNP 6 164 NC_000913 89239 A SNP 7 165 NC_000913 89241 A SNP 8 166 NC_000913 89263 G SNP 9 167 NC_000913 89316 C SNP 10 168 NC_000913 89321 G SNP 11 169 NC_000913 89471 G SNP 12 170 NC_000913 89570 C SNP 13 171 NC_000913 89699 C SNP 14 172 NC_000913 89754 C SNP 15 173 NC_000913 90432 G SNP 16 174 NC_000913 90435 C SNP 17 175 NC_000913 91904 A SNP 18 176 NC_000913 91916 T SNP 19 177 NC_000913 91922 A SNP 20 178 NC_000913 91949 T SNP 21 179 NC_000913 92096 T SNP 22 180 NC_000913 92162 T SNP 23 181 NC_000913 92327 T SNP 24 182 NC_000913 92354 G SNP 25 183 NC_000913 92687 G SNP 26 184 NC_000913 92810 C SNP 27 185 NC_000913 92843 G SNP 28 186 NC_000913 94278 A SNP 29 187 NC_000913 134256 T SNP 30 192 NC_000913 246747 T DEL 31 367,382 NC_000913 257908 776 SNP 32 193 NC_000913 284535 G SNP 33 194 NC_000913 313543 A DEL 34 368,385 NC_000913 339199 36219 SUB 35 197,198 NC_000913 480295 2 AA SNP 36 199 NC_000913 553161 A SNP 37 203 NC_000913 690948 A SNP 38 204 NC_000913 700038 A MOB 39 386,388 NC_000913 789812 IS2 -1 5 SNP 40 207 NC_000913 791688 A SUB 41 208,209 NC_000913 809217 2 AG MOB 42 383,384 NC_000913 922378 IS1 -1 9 SNP 43 212 NC_000913 968837 A SNP 44 213 NC_000913 1040126 T SNP 45 214 NC_000913 1061935 A MOB 46 387,398 NC_000913 1093481 IS2 1 5 SNP 47 215 NC_000913 1100070 A SUB 48 216,217 NC_000913 1111727 2 TT SNP 49 218 NC_000913 1123556 T SNP 50 219 NC_000913 1169836 G SNP 51 220 NC_000913 1189980 G SNP 52 221 NC_000913 1196220 T SNP 53 222 NC_000913 1196232 T SNP 54 223 NC_000913 1196245 C SNP 55 224 NC_000913 1196247 G SNP 56 234 NC_000913 1301992 T SNP 57 235 NC_000913 1306736 G SNP 58 236 NC_000913 1310770 G SNP 59 237 NC_000913 1331947 T SNP 60 239 NC_000913 1337394 G SNP 61 240 NC_000913 1357202 T SNP 62 241 NC_000913 1358859 C SNP 63 244 NC_000913 1412897 A SNP 64 245 NC_000913 1428087 T SNP 65 250 NC_000913 1610076 G SNP 66 251 NC_000913 1610440 T SNP 67 252 NC_000913 1643679 T MOB 68 406,407 NC_000913 1651851 IS2 -1 5 SNP 69 253 NC_000913 1652331 C DEL 70 370,408 NC_000913 1704350 390 SNP 71 255 NC_000913 1721136 T SNP 72 256 NC_000913 1738377 T SNP 73 257 NC_000913 1776715 T SNP 74 259 NC_000913 1856968 A SNP 75 260 NC_000913 1894839 C SNP 76 263 NC_000913 1975224 A SNP 77 264 NC_000913 1987499 A SNP 78 265 NC_000913 2003276 C SNP 79 266 NC_000913 2003462 A SNP 80 267 NC_000913 2040433 A DEL 81 269,270 NC_000913 2173363 2 SNP 82 271 NC_000913 2175991 A SNP 83 272 NC_000913 2188087 C DEL 84 372,414 NC_000913 2238416 19 DEL 85 373,415 NC_000913 2259357 3552 DEL 86 273 NC_000913 2263441 1 MOB 87 413,416 NC_000913 2317414 IS2 1 5 SNP 88 275 NC_000913 2384808 T SNP 89 276 NC_000913 2410419 A SNP 90 280 NC_000913 2484827 T SNP 91 281 NC_000913 2700747 A SNP 92 282 NC_000913 2748396 A SNP 93 283 NC_000913 2756976 A SNP 94 286 NC_000913 2780060 A SNP 95 287 NC_000913 2792209 A SNP 96 288 NC_000913 2800435 A SNP 97 289 NC_000913 2810925 A SNP 98 290 NC_000913 2817850 A SNP 99 291 NC_000913 2825328 A SNP 100 292 NC_000913 2841238 A SNP 101 293 NC_000913 2863773 T SNP 102 294 NC_000913 2878077 T SNP 103 295 NC_000913 2889365 T SNP 104 296 NC_000913 2905825 T MOB 105 422,423 NC_000913 2913392 IS2 -1 5 SNP 106 298 NC_000913 2926292 T SUB 107 303,304 NC_000913 3088010 2 TT SUB 108 308,309 NC_000913 3336411 2 AT SNP 109 310 NC_000913 3367944 A SNP 110 311 NC_000913 3388041 G SNP 111 312 NC_000913 3399929 T SNP 112 313 NC_000913 3421921 A SNP 113 314 NC_000913 3436697 A SNP 114 315 NC_000913 3449779 A SNP 115 316 NC_000913 3468768 T SNP 116 317 NC_000913 3474425 C SNP 117 318 NC_000913 3543877 A INS 118 319 NC_000913 3560455 G SNP 119 321 NC_000913 3629921 T SNP 120 322 NC_000913 3682515 T SNP 121 323 NC_000913 3696909 A SNP 122 324 NC_000913 3707947 A DEL 123 375,429 NC_000913 3708467 168 SNP 124 325 NC_000913 3725176 G SNP 125 327 NC_000913 3761230 A SNP 126 328 NC_000913 3771979 T INS 127 329 NC_000913 3815883 C INS 128 430 NC_000913 3822651 CAGGAT repeat_length=6 repeat_new_copies=2 repeat_ref_copies=1 repeat_seq=CAGGAT SNP 129 330 NC_000913 3823162 T SNP 130 331 NC_000913 3869637 A SNP 131 332 NC_000913 3878536 A SNP 132 333 NC_000913 3883678 A SNP 133 335 NC_000913 3912074 A SNP 134 336 NC_000913 3931069 T MOB 135 431,432 NC_000913 3938983 IS2 -1 5 SNP 136 337 NC_000913 3955304 T SNP 137 338 NC_000913 3988115 T SNP 138 339 NC_000913 3993531 C SNP 139 340 NC_000913 3996049 A SNP 140 341 NC_000913 4011802 T SNP 141 342 NC_000913 4084903 G SNP 142 343 NC_000913 4092703 G SNP 143 344 NC_000913 4124455 G SNP 144 346 NC_000913 4210041 A INS 145 348,349 NC_000913 4296381 GC SNP 146 350 NC_000913 4337390 T SNP 147 351 NC_000913 4338916 T SNP 148 352 NC_000913 4349993 T SNP 149 354 NC_000913 4375354 A SNP 150 355 NC_000913 4380367 T SNP 151 357 NC_000913 4425688 A SNP 152 358 NC_000913 4425696 A SUB 153 360,361 NC_000913 4436956 2 TT SNP 154 362 NC_000913 4532409 G SNP 155 363 NC_000913 4546601 T SNP 156 364 NC_000913 4578548 A SNP 157 365 NC_000913 4585230 G RA 158 . NC_000913 36 0 C A bias_e_value=0.0714198 bias_p_value=1.53867e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=341.8 fisher_strand_p_value=6.96716e-10 frequency=2.041e-01 ks_quality_p_value=1 major_base=C major_cov=79/38 major_frequency=7.959e-01 minor_base=A minor_cov=2/28 new_cov=2/28 polymorphism_frequency=2.041e-01 polymorphism_score=28.8 prediction=polymorphism ref_cov=79/38 total_cov=81/66 RA 159 . NC_000913 58065 0 C A bias_e_value=0.00958968 bias_p_value=2.066e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=176.2 fisher_strand_p_value=8.5431e-11 frequency=2.952e-01 ks_quality_p_value=1 major_base=C major_cov=27/47 major_frequency=7.048e-01 minor_base=A minor_cov=31/0 new_cov=31/0 polymorphism_frequency=2.952e-01 polymorphism_score=21.9 prediction=polymorphism ref_cov=27/47 total_cov=58/47 RA 160 . NC_000913 89089 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=426.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=79/40 major_frequency=9.917e-01 minor_base=G minor_cov=1/0 new_cov=79/40 polymorphism_frequency=9.917e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=80/40 RA 161 . NC_000913 89103 0 G C consensus_score=479.8 frequency=1 major_base=C major_cov=83/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=83/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=83/43 RA 162 . NC_000913 89143 0 A G consensus_score=521.5 frequency=1 major_base=G major_cov=98/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=98/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=98/41 RA 163 . NC_000913 89145 0 G T consensus_score=502.8 frequency=1 major_base=T major_cov=98/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=98/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=98/41 RA 164 . NC_000913 89239 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=523.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=93/59 major_frequency=9.935e-01 minor_base=C minor_cov=1/0 new_cov=93/59 polymorphism_frequency=9.935e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=94/59 RA 165 . NC_000913 89241 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=540.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=93/59 major_frequency=9.935e-01 minor_base=C minor_cov=1/0 new_cov=93/59 polymorphism_frequency=9.935e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=94/59 RA 166 . NC_000913 89263 0 A G consensus_score=630.6 frequency=1 major_base=G major_cov=91/75 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/75 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/75 RA 167 . NC_000913 89316 0 T C bias_e_value=4254800 bias_p_value=0.916657 consensus_score=640.3 fisher_strand_p_value=0.620575 frequency=1 ks_quality_p_value=1 major_base=C major_cov=83/85 major_frequency=9.825e-01 minor_base=A minor_cov=2/1 new_cov=83/85 polymorphism_frequency=9.825e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=0/0 total_cov=85/86 RA 168 . NC_000913 89321 0 A G bias_e_value=78331.4 bias_p_value=0.0168758 consensus_score=491.3 fisher_strand_p_value=0.00239971 frequency=1 ks_quality_p_value=1 major_base=G major_cov=84/73 major_frequency=9.290e-01 minor_base=T minor_cov=1/11 new_cov=84/73 polymorphism_frequency=9.290e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=85/84 RA 169 . NC_000913 89471 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=529.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999138 major_base=G major_cov=48/96 major_frequency=9.931e-01 minor_base=A minor_cov=0/1 new_cov=48/96 polymorphism_frequency=9.931e-01 polymorphism_score=-5.9 prediction=consensus ref_cov=0/0 total_cov=48/97 RA 170 . NC_000913 89570 0 A C bias_e_value=3214500 bias_p_value=0.692535 consensus_score=405.0 fisher_strand_p_value=0.336364 frequency=1 ks_quality_p_value=0.972203 major_base=C major_cov=36/73 major_frequency=9.909e-01 minor_base=A minor_cov=1/0 new_cov=36/73 polymorphism_frequency=9.909e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=1/0 total_cov=37/73 RA 171 . NC_000913 89699 0 T C consensus_score=249.0 frequency=1 major_base=C major_cov=31/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/41 RA 172 . NC_000913 89754 0 T C bias_e_value=4640220 bias_p_value=0.999692 consensus_score=266.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.975272 major_base=C major_cov=29/42 major_frequency=9.861e-01 minor_base=A minor_cov=0/1 new_cov=29/42 polymorphism_frequency=9.861e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/0 total_cov=29/43 RA 173 . NC_000913 90432 0 A G consensus_score=357.1 frequency=1 major_base=G major_cov=47/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/49 RA 174 . NC_000913 90435 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=336.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=47/48 major_frequency=9.896e-01 minor_base=T minor_cov=0/1 new_cov=47/48 polymorphism_frequency=9.896e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=47/49 RA 175 . NC_000913 91904 0 G A consensus_score=342.0 frequency=1 major_base=A major_cov=64/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=64/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/39 RA 176 . NC_000913 91916 0 C T bias_e_value=3516870 bias_p_value=0.757675 consensus_score=380.6 fisher_strand_p_value=0.390476 frequency=1 ks_quality_p_value=1 major_base=T major_cov=64/40 major_frequency=9.905e-01 minor_base=G minor_cov=0/1 new_cov=64/40 polymorphism_frequency=9.905e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/41 RA 177 . NC_000913 91922 0 G A bias_e_value=3500710 bias_p_value=0.754194 consensus_score=351.7 fisher_strand_p_value=0.386792 frequency=1 ks_quality_p_value=1 major_base=A major_cov=65/40 major_frequency=9.906e-01 minor_base=G minor_cov=0/1 new_cov=65/40 polymorphism_frequency=9.906e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=65/41 RA 178 . NC_000913 91949 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=388.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=66/44 major_frequency=9.910e-01 minor_base=C minor_cov=1/0 new_cov=66/44 polymorphism_frequency=9.910e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=67/44 RA 179 . NC_000913 92096 0 A T consensus_score=458.5 frequency=1 major_base=T major_cov=52/77 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/77 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/77 RA 180 . NC_000913 92162 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=447.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=55/73 major_frequency=9.846e-01 minor_base=C minor_cov=1/1 new_cov=55/73 polymorphism_frequency=9.846e-01 polymorphism_score=NA prediction=consensus ref_cov=1/1 total_cov=56/75 RA 181 . NC_000913 92327 0 G T consensus_score=381.7 frequency=1 major_base=T major_cov=50/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/59 RA 182 . NC_000913 92354 0 A G bias_e_value=3773360 bias_p_value=0.812935 consensus_score=415.4 fisher_strand_p_value=0.454545 frequency=1 ks_quality_p_value=1 major_base=G major_cov=49/60 major_frequency=9.909e-01 minor_base=T minor_cov=1/0 new_cov=49/60 polymorphism_frequency=9.909e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/60 RA 183 . NC_000913 92687 0 A G bias_e_value=4130010 bias_p_value=0.889771 consensus_score=354.4 fisher_strand_p_value=0.568869 frequency=1 ks_quality_p_value=1 major_base=G major_cov=55/38 major_frequency=9.688e-01 minor_base=T minor_cov=1/2 new_cov=55/38 polymorphism_frequency=9.688e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=0/0 total_cov=56/40 RA 184 . NC_000913 92810 0 T C consensus_score=333.9 frequency=1 major_base=C major_cov=54/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/40 RA 185 . NC_000913 92843 0 A G consensus_score=389.4 frequency=1 major_base=G major_cov=64/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=64/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/40 RA 186 . NC_000913 94278 0 G A consensus_score=230.6 frequency=1 major_base=A major_cov=26/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/42 RA 187 . NC_000913 134256 0 G T consensus_score=294.7 frequency=1 major_base=T major_cov=33/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/56 RA 188 . NC_000913 141849 0 C A bias_e_value=0.00122021 bias_p_value=2.62883e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=274.2 fisher_strand_p_value=9.98417e-12 frequency=2.817e-01 ks_quality_p_value=1 major_base=C major_cov=39/63 major_frequency=7.183e-01 minor_base=A minor_cov=39/1 new_cov=39/1 polymorphism_frequency=2.817e-01 polymorphism_score=25.5 prediction=polymorphism ref_cov=39/63 total_cov=78/65 RA 189 . NC_000913 147802 0 C A bias_e_value=2.91681e-05 bias_p_value=6.28399e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=301.2 fisher_strand_p_value=2.08073e-13 frequency=2.482e-01 ks_quality_p_value=1 major_base=C major_cov=36/70 major_frequency=7.518e-01 minor_base=A minor_cov=35/0 new_cov=35/0 polymorphism_frequency=2.482e-01 polymorphism_score=13.2 prediction=polymorphism ref_cov=36/70 total_cov=71/70 RA 190 . NC_000913 190843 0 C A bias_e_value=0.00275152 bias_p_value=5.92789e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=172.6 fisher_strand_p_value=2.3261e-11 frequency=3.629e-01 ks_quality_p_value=1 major_base=C major_cov=37/42 major_frequency=6.371e-01 minor_base=A minor_cov=45/0 new_cov=45/0 polymorphism_frequency=3.629e-01 polymorphism_score=10.2 prediction=polymorphism ref_cov=37/42 total_cov=82/42 RA 191 . NC_000913 228689 0 T . bias_e_value=438338 bias_p_value=0.0944359 consensus_reject=FREQUENCY_CUTOFF consensus_score=217.3 fisher_strand_p_value=0.0190335 frequency=2.768e-01 ks_quality_p_value=1 major_base=T major_cov=31/50 major_frequency=7.232e-01 minor_base=. minor_cov=20/11 new_cov=20/11 polymorphism_frequency=2.768e-01 polymorphism_score=130.7 prediction=polymorphism ref_cov=31/50 total_cov=52/62 RA 192 . NC_000913 246747 0 G T bias_e_value=3655620 bias_p_value=0.787568 consensus_score=414.6 fisher_strand_p_value=0.423729 frequency=1 ks_quality_p_value=1 major_base=T major_cov=49/68 major_frequency=9.915e-01 minor_base=C minor_cov=1/0 new_cov=49/68 polymorphism_frequency=9.915e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/68 RA 193 . NC_000913 284535 0 T G consensus_score=140.1 frequency=1 major_base=G major_cov=24/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/17 RA 194 . NC_000913 313543 0 G A consensus_score=478.0 frequency=1 major_base=A major_cov=68/70 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=68/70 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=68/70 RA 195 . NC_000913 430299 0 C A bias_e_value=1580.25 bias_p_value=0.00034045 consensus_reject=FREQUENCY_CUTOFF consensus_score=289.9 fisher_strand_p_value=2.981e-05 frequency=2.290e-01 ks_quality_p_value=1 major_base=C major_cov=66/35 major_frequency=7.710e-01 minor_base=A minor_cov=30/0 new_cov=30/0 polymorphism_frequency=2.290e-01 polymorphism_score=16.9 prediction=polymorphism ref_cov=66/35 total_cov=96/35 RA 196 . NC_000913 442025 0 C A bias_e_value=5.91179 bias_p_value=1.27364e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=184.9 fisher_strand_p_value=7.30635e-08 frequency=2.925e-01 ks_quality_p_value=1 major_base=C major_cov=33/42 major_frequency=7.075e-01 minor_base=A minor_cov=30/1 new_cov=30/1 polymorphism_frequency=2.925e-01 polymorphism_score=11.2 prediction=polymorphism ref_cov=33/42 total_cov=63/43 RA 197 . NC_000913 480295 0 G A consensus_score=492.0 frequency=1 major_base=A major_cov=61/71 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/71 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/71 RA 198 . NC_000913 480296 0 G A bias_e_value=3800800 bias_p_value=0.818846 consensus_score=484.4 fisher_strand_p_value=0.462121 frequency=1 ks_quality_p_value=1 major_base=A major_cov=60/71 major_frequency=9.924e-01 minor_base=C minor_cov=1/0 new_cov=60/71 polymorphism_frequency=9.924e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/71 RA 199 . NC_000913 553161 0 G A consensus_score=220.2 frequency=1 major_base=A major_cov=38/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/32 RA 200 . NC_000913 564850 0 G T bias_e_value=3.37774 bias_p_value=7.27702e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=240.0 fisher_strand_p_value=4.03715e-08 frequency=2.182e-01 ks_quality_p_value=1 major_base=G major_cov=50/36 major_frequency=7.818e-01 minor_base=T minor_cov=0/24 new_cov=0/24 polymorphism_frequency=2.182e-01 polymorphism_score=10.9 prediction=polymorphism ref_cov=50/36 total_cov=50/60 RA 201 . NC_000913 571586 0 G T bias_e_value=1.30281e-08 bias_p_value=2.80678e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=441.2 fisher_strand_p_value=7.35755e-17 frequency=2.165e-01 ks_quality_p_value=1 major_base=G major_cov=101/51 major_frequency=7.835e-01 minor_base=T minor_cov=0/42 new_cov=0/42 polymorphism_frequency=2.165e-01 polymorphism_score=18.4 prediction=polymorphism ref_cov=101/51 total_cov=101/93 RA 202 . NC_000913 604671 0 C A bias_e_value=2.22895 bias_p_value=4.80206e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=266.2 fisher_strand_p_value=2.60064e-08 frequency=2.072e-01 ks_quality_p_value=1 major_base=C major_cov=29/59 major_frequency=7.928e-01 minor_base=A minor_cov=22/1 new_cov=22/1 polymorphism_frequency=2.072e-01 polymorphism_score=10.2 prediction=polymorphism ref_cov=29/59 total_cov=51/60 RA 203 . NC_000913 690948 0 G A bias_e_value=2305860 bias_p_value=0.496775 consensus_score=373.3 fisher_strand_p_value=0.184767 frequency=1 ks_quality_p_value=1 major_base=A major_cov=46/63 major_frequency=9.820e-01 minor_base=C minor_cov=2/0 new_cov=46/63 polymorphism_frequency=9.820e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/63 RA 204 . NC_000913 700038 0 G A bias_e_value=3810950 bias_p_value=0.821033 consensus_score=309.2 fisher_strand_p_value=0.477273 frequency=1 ks_quality_p_value=0.974215 major_base=A major_cov=41/46 major_frequency=9.886e-01 minor_base=G minor_cov=1/0 new_cov=41/46 polymorphism_frequency=9.886e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=42/46 RA 205 . NC_000913 710830 0 G T bias_e_value=0.0534885 bias_p_value=1.15236e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=235.2 fisher_strand_p_value=5.14737e-10 frequency=2.595e-01 ks_quality_p_value=1 major_base=G major_cov=53/44 major_frequency=7.405e-01 minor_base=T minor_cov=0/34 new_cov=0/34 polymorphism_frequency=2.595e-01 polymorphism_score=11.9 prediction=polymorphism ref_cov=53/44 total_cov=53/78 RA 206 . NC_000913 781145 0 T . bias_e_value=2354250 bias_p_value=0.507201 consensus_reject=FREQUENCY_CUTOFF consensus_score=179.2 fisher_strand_p_value=0.6059 frequency=2.405e-01 ks_quality_p_value=0.315237 major_base=T major_cov=33/27 major_frequency=7.595e-01 minor_base=. minor_cov=9/10 new_cov=9/10 polymorphism_frequency=2.405e-01 polymorphism_score=80.2 prediction=polymorphism ref_cov=33/27 total_cov=42/38 RA 207 . NC_000913 791688 0 G A bias_e_value=3712170 bias_p_value=0.799752 consensus_score=301.2 fisher_strand_p_value=0.438202 frequency=1 ks_quality_p_value=1 major_base=A major_cov=38/50 major_frequency=9.888e-01 minor_base=G minor_cov=1/0 new_cov=38/50 polymorphism_frequency=9.888e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=39/50 RA 208 . NC_000913 809217 0 C A consensus_score=284.0 frequency=1 major_base=A major_cov=53/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/29 RA 209 . NC_000913 809218 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=309.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=52/29 major_frequency=9.878e-01 minor_base=A minor_cov=1/0 new_cov=52/29 polymorphism_frequency=9.878e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=53/29 RA 210 . NC_000913 834674 0 C A bias_e_value=0.803155 bias_p_value=1.73032e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=167.4 fisher_strand_p_value=8.8542e-09 frequency=2.688e-01 ks_quality_p_value=1 major_base=C major_cov=26/42 major_frequency=7.312e-01 minor_base=A minor_cov=25/0 new_cov=25/0 polymorphism_frequency=2.688e-01 polymorphism_score=14.5 prediction=polymorphism ref_cov=26/42 total_cov=51/42 RA 211 . NC_000913 847955 0 G A bias_e_value=2.37878e-08 bias_p_value=5.12485e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=196.6 fisher_strand_p_value=1.36554e-16 frequency=3.165e-01 ks_quality_p_value=1 major_base=G major_cov=65/30 major_frequency=6.835e-01 minor_base=A minor_cov=0/44 new_cov=0/44 polymorphism_frequency=3.165e-01 polymorphism_score=61.4 prediction=polymorphism ref_cov=65/30 total_cov=65/74 RA 212 . NC_000913 968837 0 G A bias_e_value=3816680 bias_p_value=0.822267 consensus_score=359.5 fisher_strand_p_value=0.466667 frequency=1 ks_quality_p_value=0.999817 major_base=A major_cov=48/56 major_frequency=9.905e-01 minor_base=C minor_cov=1/0 new_cov=48/56 polymorphism_frequency=9.905e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/56 RA 213 . NC_000913 1040126 0 G T consensus_score=384.4 frequency=1 major_base=T major_cov=60/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/51 RA 214 . NC_000913 1061935 0 G A consensus_score=275.5 frequency=1 major_base=A major_cov=52/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/33 RA 215 . NC_000913 1100070 0 G A consensus_score=290.5 frequency=1 major_base=A major_cov=41/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/43 RA 216 . NC_000913 1111727 0 C T consensus_score=358.1 frequency=1 major_base=T major_cov=66/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=66/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/33 RA 217 . NC_000913 1111728 0 C T consensus_score=355.5 frequency=1 major_base=T major_cov=66/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=66/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/33 RA 218 . NC_000913 1123556 0 C T consensus_score=369.7 frequency=1 major_base=T major_cov=52/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/50 RA 219 . NC_000913 1169836 0 A G consensus_score=333.7 frequency=1 major_base=G major_cov=46/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/45 RA 220 . NC_000913 1189980 0 A G consensus_score=350.0 frequency=1 major_base=G major_cov=55/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/37 RA 221 . NC_000913 1196220 0 C T consensus_score=145.3 frequency=1 major_base=T major_cov=28/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/22 RA 222 . NC_000913 1196232 0 C T consensus_score=128.4 frequency=1 major_base=T major_cov=27/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/17 RA 223 . NC_000913 1196245 0 T C consensus_score=131.4 frequency=1 major_base=C major_cov=26/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/17 RA 224 . NC_000913 1196247 0 A G consensus_score=133.8 frequency=1 major_base=G major_cov=26/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/17 RA 225 . NC_000913 1196277 0 C T consensus_score=85.6 deleted=1 frequency=1 major_base=T major_cov=20/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/12 RA 226 . NC_000913 1196280 0 G C consensus_score=85.3 deleted=1 frequency=1 major_base=C major_cov=20/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/12 RA 227 . NC_000913 1196283 0 A G consensus_score=89.1 deleted=1 frequency=1 major_base=G major_cov=20/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/12 RA 228 . NC_000913 1196292 0 C T consensus_score=86.6 deleted=1 frequency=1 major_base=T major_cov=20/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/12 RA 229 . NC_000913 1196304 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=67.4 deleted=1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=16/12 major_frequency=9.655e-01 minor_base=C minor_cov=1/0 new_cov=16/12 polymorphism_frequency=9.655e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/12 RA 230 . NC_000913 1196316 0 T A consensus_score=51.0 deleted=1 frequency=1 major_base=A major_cov=14/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=14/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/9 RA 231 . NC_000913 1196325 0 A G consensus_score=28.5 deleted=1 frequency=1 major_base=G major_cov=8/7 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=8/7 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=8/7 RA 232 . NC_000913 1196352 0 C A consensus_score=18.9 deleted=1 frequency=1 major_base=A major_cov=7/5 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/5 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/5 RA 233 . NC_000913 1214626 0 G T bias_e_value=0.032491 bias_p_value=6.99989e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=312.9 fisher_strand_p_value=3.05553e-10 frequency=2.028e-01 ks_quality_p_value=1 major_base=G major_cov=68/46 major_frequency=7.972e-01 minor_base=T minor_cov=0/29 new_cov=0/29 polymorphism_frequency=2.028e-01 polymorphism_score=11.9 prediction=polymorphism ref_cov=68/46 total_cov=68/75 RA 234 . NC_000913 1301992 0 A T consensus_score=401.4 frequency=1 major_base=T major_cov=49/72 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/72 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/72 RA 235 . NC_000913 1306736 0 T G consensus_score=415.6 frequency=1 major_base=G major_cov=72/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=72/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=72/39 RA 236 . NC_000913 1310770 0 A G consensus_score=523.3 frequency=1 major_base=G major_cov=82/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=82/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=82/59 RA 237 . NC_000913 1331947 0 C T consensus_score=384.4 frequency=1 major_base=T major_cov=53/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/54 RA 238 . NC_000913 1334966 0 A C bias_e_value=0.000620654 bias_p_value=1.33714e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=363.6 fisher_strand_p_value=4.94644e-12 frequency=2.211e-01 ks_quality_p_value=1 major_base=A major_cov=76/79 major_frequency=7.789e-01 minor_base=C minor_cov=44/0 new_cov=44/0 polymorphism_frequency=2.211e-01 polymorphism_score=28.0 prediction=polymorphism ref_cov=76/79 total_cov=121/79 RA 239 . NC_000913 1337394 0 A G bias_e_value=3825680 bias_p_value=0.824207 consensus_score=284.2 fisher_strand_p_value=0.469136 frequency=1 ks_quality_p_value=1 major_base=G major_cov=43/37 major_frequency=9.877e-01 minor_base=T minor_cov=0/1 new_cov=43/37 polymorphism_frequency=9.877e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/38 RA 240 . NC_000913 1357202 0 C T consensus_score=356.0 frequency=1 major_base=T major_cov=56/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/50 RA 241 . NC_000913 1358859 0 T C consensus_score=272.0 frequency=1 major_base=C major_cov=40/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/32 RA 242 . NC_000913 1372018 0 C A bias_e_value=0.0860463 bias_p_value=1.85379e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=266.4 fisher_strand_p_value=8.46886e-10 frequency=2.281e-01 ks_quality_p_value=1 major_base=C major_cov=32/56 major_frequency=7.719e-01 minor_base=A minor_cov=26/0 new_cov=26/0 polymorphism_frequency=2.281e-01 polymorphism_score=12.6 prediction=polymorphism ref_cov=32/56 total_cov=58/56 RA 243 . NC_000913 1390607 0 C A bias_e_value=0.127174 bias_p_value=2.73984e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=253.7 fisher_strand_p_value=1.27554e-09 frequency=2.953e-01 ks_quality_p_value=1 major_base=C major_cov=58/47 major_frequency=7.047e-01 minor_base=A minor_cov=44/0 new_cov=44/0 polymorphism_frequency=2.953e-01 polymorphism_score=14.6 prediction=polymorphism ref_cov=58/47 total_cov=102/47 RA 244 . NC_000913 1412897 0 G A bias_e_value=3520480 bias_p_value=0.758453 consensus_score=464.7 fisher_strand_p_value=0.391304 frequency=1 ks_quality_p_value=1 major_base=A major_cov=84/53 major_frequency=9.928e-01 minor_base=C minor_cov=0/1 new_cov=84/53 polymorphism_frequency=9.928e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=84/55 RA 245 . NC_000913 1428087 0 C T consensus_score=253.4 frequency=1 major_base=T major_cov=27/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/55 RA 246 . NC_000913 1466201 0 T C bias_e_value=640969 bias_p_value=0.138091 consensus_reject=FREQUENCY_CUTOFF consensus_score=220.0 fisher_strand_p_value=0.0308285 frequency=2.672e-01 ks_quality_p_value=1 major_base=T major_cov=27/58 major_frequency=7.328e-01 minor_base=C minor_cov=17/14 new_cov=17/14 polymorphism_frequency=2.672e-01 polymorphism_score=64.9 prediction=polymorphism ref_cov=27/58 total_cov=44/73 RA 247 . NC_000913 1466210 0 G A bias_e_value=681983 bias_p_value=0.146927 consensus_reject=FREQUENCY_CUTOFF consensus_score=213.2 fisher_strand_p_value=0.0533819 frequency=2.232e-01 ks_quality_p_value=0.625644 major_base=G major_cov=25/62 major_frequency=7.768e-01 minor_base=A minor_cov=13/12 new_cov=13/12 polymorphism_frequency=2.232e-01 polymorphism_score=63.8 prediction=polymorphism ref_cov=25/62 total_cov=38/74 RA 248 . NC_000913 1502770 0 T C bias_e_value=0.00134052 bias_p_value=2.88802e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=205.1 fisher_strand_p_value=1.10094e-11 frequency=2.609e-01 ks_quality_p_value=1 major_base=T major_cov=57/28 major_frequency=7.391e-01 minor_base=C minor_cov=0/30 new_cov=0/30 polymorphism_frequency=2.609e-01 polymorphism_score=27.5 prediction=polymorphism ref_cov=57/28 total_cov=57/58 RA 249 . NC_000913 1557428 0 G T bias_e_value=4.43853 bias_p_value=9.5624e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=121.1 fisher_strand_p_value=5.39157e-08 frequency=3.049e-01 ks_quality_p_value=1 major_base=G major_cov=34/23 major_frequency=6.951e-01 minor_base=T minor_cov=0/25 new_cov=0/25 polymorphism_frequency=3.049e-01 polymorphism_score=10.4 prediction=polymorphism ref_cov=34/23 total_cov=34/48 RA 250 . NC_000913 1610076 0 T G consensus_score=449.6 frequency=1 major_base=G major_cov=62/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/56 RA 251 . NC_000913 1610440 0 C T consensus_score=385.9 frequency=1 major_base=T major_cov=56/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/55 RA 252 . NC_000913 1643679 0 A T consensus_score=284.4 frequency=1 major_base=T major_cov=35/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/50 RA 253 . NC_000913 1652331 0 T C consensus_score=511.5 frequency=1 major_base=C major_cov=66/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=66/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/67 RA 254 . NC_000913 1661394 0 G A bias_e_value=4259030 bias_p_value=0.917568 consensus_reject=FREQUENCY_CUTOFF consensus_score=96.2 fisher_strand_p_value=0.630522 frequency=6.667e-01 ks_quality_p_value=0.987261 major_base=A major_cov=22/30 major_frequency=6.667e-01 minor_base=G minor_cov=13/13 new_cov=22/30 polymorphism_frequency=6.667e-01 polymorphism_score=74.3 prediction=polymorphism ref_cov=13/13 total_cov=35/43 RA 255 . NC_000913 1721136 0 C T consensus_score=526.9 frequency=1 major_base=T major_cov=52/102 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/102 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/102 RA 256 . NC_000913 1738377 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=347.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=42/54 major_frequency=9.796e-01 minor_base=C minor_cov=1/1 new_cov=42/54 polymorphism_frequency=9.796e-01 polymorphism_score=NA prediction=consensus ref_cov=1/1 total_cov=43/55 RA 257 . NC_000913 1776715 0 A T consensus_score=428.2 frequency=1 major_base=T major_cov=58/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/63 RA 258 . NC_000913 1812509 0 G T bias_e_value=3.53293e-06 bias_p_value=7.61136e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=367.6 fisher_strand_p_value=2.35052e-14 frequency=2.298e-01 ks_quality_p_value=1 major_base=G major_cov=81/43 major_frequency=7.702e-01 minor_base=T minor_cov=0/37 new_cov=0/37 polymorphism_frequency=2.298e-01 polymorphism_score=12.6 prediction=polymorphism ref_cov=81/43 total_cov=81/80 RA 259 . NC_000913 1856968 0 T A bias_e_value=2662990 bias_p_value=0.573716 consensus_score=488.1 fisher_strand_p_value=0.233894 frequency=1 ks_quality_p_value=1 major_base=A major_cov=71/65 major_frequency=9.855e-01 minor_base=G minor_cov=0/2 new_cov=71/65 polymorphism_frequency=9.855e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=71/67 RA 260 . NC_000913 1894839 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=288.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=36/43 major_frequency=9.875e-01 minor_base=T minor_cov=0/1 new_cov=36/43 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=36/44 RA 261 . NC_000913 1922815 0 C A bias_e_value=5647.37 bias_p_value=0.00121667 consensus_reject=FREQUENCY_CUTOFF consensus_score=279.8 fisher_strand_p_value=0.000121475 frequency=2.357e-01 ks_quality_p_value=1 major_base=C major_cov=46/74 major_frequency=7.643e-01 minor_base=A minor_cov=28/9 new_cov=28/9 polymorphism_frequency=2.357e-01 polymorphism_score=17.6 prediction=polymorphism ref_cov=46/74 total_cov=74/83 RA 262 . NC_000913 1930982 0 C A bias_e_value=0.000396195 bias_p_value=8.53565e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=235.3 fisher_strand_p_value=3.10407e-12 frequency=2.712e-01 ks_quality_p_value=1 major_base=C major_cov=29/57 major_frequency=7.288e-01 minor_base=A minor_cov=32/0 new_cov=32/0 polymorphism_frequency=2.712e-01 polymorphism_score=12.9 prediction=polymorphism ref_cov=29/57 total_cov=61/57 RA 263 . NC_000913 1975224 0 G A consensus_score=377.3 frequency=1 major_base=A major_cov=43/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/60 RA 264 . NC_000913 1987499 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=379.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=58/51 major_frequency=9.909e-01 minor_base=G minor_cov=1/0 new_cov=58/51 polymorphism_frequency=9.909e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/51 RA 265 . NC_000913 2003276 0 A C consensus_score=449.1 frequency=1 major_base=C major_cov=31/89 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/89 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/89 RA 266 . NC_000913 2003462 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=331.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=50/48 major_frequency=9.899e-01 minor_base=C minor_cov=1/0 new_cov=50/48 polymorphism_frequency=9.899e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=51/48 RA 267 . NC_000913 2040433 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=252.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=58/22 major_frequency=9.877e-01 minor_base=C minor_cov=1/0 new_cov=58/22 polymorphism_frequency=9.877e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=59/22 RA 268 . NC_000913 2098025 0 C A bias_e_value=0.0001795 bias_p_value=3.86715e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=294.0 fisher_strand_p_value=1.36554e-12 frequency=2.553e-01 ks_quality_p_value=1 major_base=C major_cov=40/65 major_frequency=7.447e-01 minor_base=A minor_cov=36/0 new_cov=36/0 polymorphism_frequency=2.553e-01 polymorphism_score=11.8 prediction=polymorphism ref_cov=40/65 total_cov=76/65 RA 269 . NC_000913 2173363 0 C . consensus_score=474.3 frequency=1 major_base=. major_cov=46/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/52 RA 270 . NC_000913 2173364 0 C . consensus_score=474.3 frequency=1 major_base=. major_cov=46/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/52 RA 271 . NC_000913 2175991 0 T A consensus_score=336.5 frequency=1 major_base=A major_cov=56/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/39 RA 272 . NC_000913 2188087 0 T C bias_e_value=3735870 bias_p_value=0.804858 consensus_score=459.2 fisher_strand_p_value=0.444444 frequency=1 ks_quality_p_value=1 major_base=C major_cov=55/70 major_frequency=9.921e-01 minor_base=A minor_cov=1/0 new_cov=55/70 polymorphism_frequency=9.921e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/70 RA 273 . NC_000913 2263441 0 C . consensus_score=458.6 frequency=1 major_base=. major_cov=61/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/34 RA 274 . NC_000913 2288418 0 G T bias_e_value=0.0022128 bias_p_value=4.76726e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=293.1 fisher_strand_p_value=1.85417e-11 frequency=2.635e-01 ks_quality_p_value=1 major_base=G major_cov=62/61 major_frequency=7.365e-01 minor_base=T minor_cov=0/44 new_cov=0/44 polymorphism_frequency=2.635e-01 polymorphism_score=25.1 prediction=polymorphism ref_cov=62/61 total_cov=62/105 RA 275 . NC_000913 2384808 0 C T bias_e_value=3702340 bias_p_value=0.797633 consensus_score=349.0 fisher_strand_p_value=0.435644 frequency=1 ks_quality_p_value=1 major_base=T major_cov=57/43 major_frequency=9.901e-01 minor_base=C minor_cov=0/1 new_cov=57/43 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=57/44 RA 276 . NC_000913 2410419 0 G A consensus_score=334.5 frequency=1 major_base=A major_cov=60/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/37 RA 277 . NC_000913 2412396 0 C A bias_e_value=0.00015835 bias_p_value=3.41149e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=307.3 fisher_strand_p_value=1.19914e-12 frequency=2.466e-01 ks_quality_p_value=1 major_base=C major_cov=42/68 major_frequency=7.534e-01 minor_base=A minor_cov=36/0 new_cov=36/0 polymorphism_frequency=2.466e-01 polymorphism_score=18.9 prediction=polymorphism ref_cov=42/68 total_cov=78/68 RA 278 . NC_000913 2465016 0 C A bias_e_value=33.4661 bias_p_value=7.20996e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=176.1 fisher_strand_p_value=4.62579e-07 frequency=2.525e-01 ks_quality_p_value=1 major_base=C major_cov=35/39 major_frequency=7.475e-01 minor_base=A minor_cov=25/0 new_cov=25/0 polymorphism_frequency=2.525e-01 polymorphism_score=11.4 prediction=polymorphism ref_cov=35/39 total_cov=60/39 RA 279 . NC_000913 2472817 0 C A bias_e_value=0.00566826 bias_p_value=1.22117e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=141.0 fisher_strand_p_value=4.93772e-11 frequency=3.571e-01 ks_quality_p_value=1 major_base=C major_cov=24/39 major_frequency=6.429e-01 minor_base=A minor_cov=35/0 new_cov=35/0 polymorphism_frequency=3.571e-01 polymorphism_score=16.4 prediction=polymorphism ref_cov=24/39 total_cov=59/39 RA 280 . NC_000913 2484827 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=494.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=77/65 major_frequency=9.930e-01 minor_base=C minor_cov=1/0 new_cov=77/65 polymorphism_frequency=9.930e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=78/65 RA 281 . NC_000913 2700747 0 G A consensus_score=354.3 frequency=1 major_base=A major_cov=54/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/47 RA 282 . NC_000913 2748396 0 G A consensus_score=458.8 frequency=1 major_base=A major_cov=68/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=68/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=68/62 RA 283 . NC_000913 2756976 0 G A consensus_score=317.0 frequency=1 major_base=A major_cov=46/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/48 RA 284 . NC_000913 2767444 0 C A bias_e_value=4.27608e-08 bias_p_value=9.21242e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=249.5 fisher_strand_p_value=2.49475e-16 frequency=2.621e-01 ks_quality_p_value=1 major_base=C major_cov=11/65 major_frequency=7.379e-01 minor_base=A minor_cov=27/0 new_cov=27/0 polymorphism_frequency=2.621e-01 polymorphism_score=10.8 prediction=polymorphism ref_cov=11/65 total_cov=38/65 RA 285 . NC_000913 2767445 0 C A bias_e_value=1.22342e-13 bias_p_value=2.63575e-20 consensus_reject=FREQUENCY_CUTOFF consensus_score=231.9 fisher_strand_p_value=5.27208e-22 frequency=3.204e-01 ks_quality_p_value=1 major_base=C major_cov=5/65 major_frequency=6.796e-01 minor_base=A minor_cov=33/0 new_cov=33/0 polymorphism_frequency=3.204e-01 polymorphism_score=16.3 prediction=polymorphism ref_cov=5/65 total_cov=38/65 RA 286 . NC_000913 2780060 0 G A consensus_score=287.3 frequency=1 major_base=A major_cov=44/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/36 RA 287 . NC_000913 2792209 0 G A consensus_score=178.8 frequency=1 major_base=A major_cov=34/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/18 RA 288 . NC_000913 2800435 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=375.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=58/53 major_frequency=9.911e-01 minor_base=G minor_cov=1/0 new_cov=58/53 polymorphism_frequency=9.911e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=59/53 RA 289 . NC_000913 2810925 0 G A consensus_score=479.6 frequency=1 major_base=A major_cov=57/73 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=57/73 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/73 RA 290 . NC_000913 2817850 0 G A bias_e_value=4065430 bias_p_value=0.875859 consensus_score=335.0 fisher_strand_p_value=0.5451 frequency=1 ks_quality_p_value=1 major_base=A major_cov=52/61 major_frequency=9.040e-01 minor_base=G minor_cov=4/8 new_cov=52/61 polymorphism_frequency=9.040e-01 polymorphism_score=15.0 prediction=consensus ref_cov=4/8 total_cov=57/69 RA 291 . NC_000913 2825328 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=343.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=58/43 major_frequency=9.902e-01 minor_base=G minor_cov=1/0 new_cov=58/43 polymorphism_frequency=9.902e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=59/43 RA 292 . NC_000913 2841238 0 G A consensus_score=402.2 frequency=1 major_base=A major_cov=33/80 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/80 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/80 RA 293 . NC_000913 2863773 0 C T bias_e_value=2605450 bias_p_value=0.56132 consensus_score=320.5 fisher_strand_p_value=0.225468 frequency=1 ks_quality_p_value=1 major_base=T major_cov=41/47 major_frequency=9.778e-01 minor_base=C minor_cov=2/0 new_cov=41/47 polymorphism_frequency=9.778e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=43/47 RA 294 . NC_000913 2878077 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=228.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=35/36 major_frequency=9.861e-01 minor_base=C minor_cov=1/0 new_cov=35/36 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=36/36 RA 295 . NC_000913 2889365 0 C T consensus_score=314.0 frequency=1 major_base=T major_cov=43/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/47 RA 296 . NC_000913 2905825 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=618.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=73/104 major_frequency=9.944e-01 minor_base=G minor_cov=0/1 new_cov=73/104 polymorphism_frequency=9.944e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=74/105 RA 297 . NC_000913 2913471 0 C A bias_e_value=10050 bias_p_value=0.00216519 consensus_reject=FREQUENCY_CUTOFF consensus_score=258.6 fisher_strand_p_value=0.000231 frequency=2.000e-01 ks_quality_p_value=1 major_base=C major_cov=58/42 major_frequency=8.000e-01 minor_base=A minor_cov=4/21 new_cov=4/21 polymorphism_frequency=2.000e-01 polymorphism_score=15.7 prediction=polymorphism ref_cov=58/42 total_cov=62/63 RA 298 . NC_000913 2926292 0 C T consensus_score=376.7 frequency=1 major_base=T major_cov=55/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/55 RA 299 . NC_000913 3032307 0 C T bias_e_value=5.16515e-07 bias_p_value=1.11278e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=208.4 fisher_strand_p_value=3.23825e-15 frequency=2.759e-01 ks_quality_p_value=1 major_base=C major_cov=20/64 major_frequency=7.241e-01 minor_base=T minor_cov=32/0 new_cov=32/0 polymorphism_frequency=2.759e-01 polymorphism_score=31.3 prediction=polymorphism ref_cov=20/64 total_cov=52/64 RA 300 . NC_000913 3054886 0 G T bias_e_value=0.000324883 bias_p_value=6.9993e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=194.5 fisher_strand_p_value=2.52644e-12 frequency=2.941e-01 ks_quality_p_value=1 major_base=G major_cov=30/54 major_frequency=7.059e-01 minor_base=T minor_cov=35/0 new_cov=35/0 polymorphism_frequency=2.941e-01 polymorphism_score=31.5 prediction=polymorphism ref_cov=30/54 total_cov=65/54 RA 301 . NC_000913 3054888 0 A C bias_e_value=0.437053 bias_p_value=9.4159e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=193.2 fisher_strand_p_value=4.66523e-09 frequency=2.632e-01 ks_quality_p_value=1 major_base=A major_cov=32/52 major_frequency=7.368e-01 minor_base=C minor_cov=29/1 new_cov=29/1 polymorphism_frequency=2.632e-01 polymorphism_score=13.7 prediction=polymorphism ref_cov=32/52 total_cov=62/54 RA 302 . NC_000913 3054894 0 G T bias_e_value=0.106283 bias_p_value=2.28976e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=173.5 fisher_strand_p_value=1.05674e-09 frequency=2.925e-01 ks_quality_p_value=1 major_base=G major_cov=23/52 major_frequency=7.075e-01 minor_base=T minor_cov=29/2 new_cov=29/2 polymorphism_frequency=2.925e-01 polymorphism_score=21.6 prediction=polymorphism ref_cov=23/52 total_cov=52/54 RA 303 . NC_000913 3088010 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=454.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=72/61 major_frequency=9.925e-01 minor_base=C minor_cov=1/0 new_cov=72/61 polymorphism_frequency=9.925e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=73/61 RA 304 . NC_000913 3088011 0 C T bias_e_value=2462160 bias_p_value=0.53045 consensus_score=442.0 fisher_strand_p_value=0.205364 frequency=1 ks_quality_p_value=1 major_base=T major_cov=73/59 major_frequency=9.851e-01 minor_base=G minor_cov=0/2 new_cov=73/59 polymorphism_frequency=9.851e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=73/61 RA 305 . NC_000913 3168264 0 G T bias_e_value=0.0203409 bias_p_value=4.38226e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=320.5 fisher_strand_p_value=1.87289e-10 frequency=2.252e-01 ks_quality_p_value=1 major_base=G major_cov=65/52 major_frequency=7.748e-01 minor_base=T minor_cov=0/34 new_cov=0/34 polymorphism_frequency=2.252e-01 polymorphism_score=17.5 prediction=polymorphism ref_cov=65/52 total_cov=65/86 RA 306 . NC_000913 3233442 0 C A bias_e_value=1186.67 bias_p_value=0.000255657 consensus_reject=FREQUENCY_CUTOFF consensus_score=211.9 fisher_strand_p_value=2.17874e-05 frequency=2.353e-01 ks_quality_p_value=1 major_base=C major_cov=56/35 major_frequency=7.647e-01 minor_base=A minor_cov=28/0 new_cov=28/0 polymorphism_frequency=2.353e-01 polymorphism_score=11.3 prediction=polymorphism ref_cov=56/35 total_cov=84/35 RA 307 . NC_000913 3269981 0 A C bias_e_value=5.53692e-10 bias_p_value=1.19288e-16 consensus_reject=FREQUENCY_CUTOFF consensus_score=174.9 fisher_strand_p_value=2.88218e-18 frequency=3.478e-01 ks_quality_p_value=1 major_base=A major_cov=16/59 major_frequency=6.522e-01 minor_base=C minor_cov=40/0 new_cov=40/0 polymorphism_frequency=3.478e-01 polymorphism_score=19.1 prediction=polymorphism ref_cov=16/59 total_cov=58/59 RA 308 . NC_000913 3336411 0 G A bias_e_value=4641040 bias_p_value=0.999867 consensus_score=399.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.983753 major_base=A major_cov=54/56 major_frequency=9.910e-01 minor_base=. minor_cov=0/1 new_cov=54/56 polymorphism_frequency=9.910e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=0/0 total_cov=54/57 RA 309 . NC_000913 3336412 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=369.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=54/54 major_frequency=9.908e-01 minor_base=C minor_cov=0/1 new_cov=54/54 polymorphism_frequency=9.908e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=54/56 RA 310 . NC_000913 3367944 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=360.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=52/53 major_frequency=9.906e-01 minor_base=C minor_cov=1/0 new_cov=52/53 polymorphism_frequency=9.906e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/53 RA 311 . NC_000913 3388041 0 T G consensus_score=340.3 frequency=1 major_base=G major_cov=48/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/43 RA 312 . NC_000913 3399929 0 A T bias_e_value=2725180 bias_p_value=0.587115 consensus_score=365.1 fisher_strand_p_value=0.243243 frequency=1 ks_quality_p_value=1 major_base=T major_cov=56/53 major_frequency=9.820e-01 minor_base=G minor_cov=0/2 new_cov=56/53 polymorphism_frequency=9.820e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/55 RA 313 . NC_000913 3421921 0 C A consensus_score=425.3 frequency=1 major_base=A major_cov=58/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/61 RA 314 . NC_000913 3436697 0 G A consensus_score=359.1 frequency=1 major_base=A major_cov=51/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/54 RA 315 . NC_000913 3449779 0 G A consensus_score=320.7 frequency=1 major_base=A major_cov=43/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/51 RA 316 . NC_000913 3468768 0 C T consensus_score=384.5 frequency=1 major_base=T major_cov=51/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/61 RA 317 . NC_000913 3474425 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=321.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=56/30 major_frequency=9.885e-01 minor_base=A minor_cov=1/0 new_cov=56/30 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/31 RA 318 . NC_000913 3543877 0 G A bias_e_value=3921450 bias_p_value=0.84484 consensus_score=381.0 fisher_strand_p_value=0.497507 frequency=1 ks_quality_p_value=1 major_base=A major_cov=56/61 major_frequency=9.832e-01 minor_base=G minor_cov=0/2 new_cov=56/61 polymorphism_frequency=9.832e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=56/63 RA 319 . NC_000913 3560455 1 . G bias_e_value=3725370 bias_p_value=0.802597 consensus_score=451.8 fisher_strand_p_value=0.441667 frequency=1 ks_quality_p_value=1 major_base=G major_cov=52/67 major_frequency=9.917e-01 minor_base=. minor_cov=1/0 new_cov=52/67 polymorphism_frequency=9.917e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/0 total_cov=53/67 RA 320 . NC_000913 3593181 0 G T bias_e_value=0.264571 bias_p_value=5.69993e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=202.8 fisher_strand_p_value=2.75214e-09 frequency=2.371e-01 ks_quality_p_value=1 major_base=G major_cov=49/25 major_frequency=7.629e-01 minor_base=T minor_cov=0/23 new_cov=0/23 polymorphism_frequency=2.371e-01 polymorphism_score=10.3 prediction=polymorphism ref_cov=49/25 total_cov=49/48 RA 321 . NC_000913 3629921 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=242.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=29/43 major_frequency=9.863e-01 minor_base=G minor_cov=0/1 new_cov=29/43 polymorphism_frequency=9.863e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/44 RA 322 . NC_000913 3682515 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=336.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=50/47 major_frequency=9.898e-01 minor_base=G minor_cov=1/0 new_cov=50/47 polymorphism_frequency=9.898e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/47 RA 323 . NC_000913 3696909 0 G A consensus_score=428.2 frequency=1 major_base=A major_cov=56/64 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/64 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/64 RA 324 . NC_000913 3707947 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=481.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=88/52 major_frequency=9.929e-01 minor_base=C minor_cov=1/0 new_cov=88/52 polymorphism_frequency=9.929e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=89/52 RA 325 . NC_000913 3725176 0 T G consensus_score=279.5 frequency=1 major_base=G major_cov=33/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/41 RA 326 . NC_000913 3741871 0 G T bias_e_value=18.9971 bias_p_value=4.09275e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=213.6 fisher_strand_p_value=2.52783e-07 frequency=2.182e-01 ks_quality_p_value=1 major_base=G major_cov=46/40 major_frequency=7.818e-01 minor_base=T minor_cov=0/24 new_cov=0/24 polymorphism_frequency=2.182e-01 polymorphism_score=10.0 prediction=polymorphism ref_cov=46/40 total_cov=46/64 RA 327 . NC_000913 3761230 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=361.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=53/49 major_frequency=9.903e-01 minor_base=C minor_cov=1/0 new_cov=53/49 polymorphism_frequency=9.903e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/49 RA 328 . NC_000913 3771979 0 G T consensus_score=540.8 frequency=1 major_base=T major_cov=78/76 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=78/76 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=78/76 RA 329 . NC_000913 3815883 1 . C bias_e_value=2655880 bias_p_value=0.572184 consensus_score=382.6 fisher_strand_p_value=0.2332 frequency=1 ks_quality_p_value=0.998463 major_base=C major_cov=48/53 major_frequency=9.806e-01 minor_base=. minor_cov=2/0 new_cov=48/53 polymorphism_frequency=9.806e-01 polymorphism_score=0.1 prediction=consensus ref_cov=2/0 total_cov=50/53 RA 330 . NC_000913 3823162 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=408.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=47/77 major_frequency=9.920e-01 minor_base=G minor_cov=0/1 new_cov=47/77 polymorphism_frequency=9.920e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/78 RA 331 . NC_000913 3869637 0 C A consensus_score=351.6 frequency=1 major_base=A major_cov=48/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/51 RA 332 . NC_000913 3878536 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=372.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=40/64 major_frequency=9.905e-01 minor_base=G minor_cov=0/1 new_cov=40/64 polymorphism_frequency=9.905e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=40/65 RA 333 . NC_000913 3883678 0 G A bias_e_value=3739380 bias_p_value=0.805614 consensus_score=427.3 fisher_strand_p_value=0.445378 frequency=1 ks_quality_p_value=1 major_base=A major_cov=66/52 major_frequency=9.916e-01 minor_base=G minor_cov=0/1 new_cov=66/52 polymorphism_frequency=9.916e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=66/53 RA 334 . NC_000913 3911533 0 C A bias_e_value=1.03019e-10 bias_p_value=2.21944e-17 consensus_reject=FREQUENCY_CUTOFF consensus_score=293.1 fisher_strand_p_value=5.14827e-19 frequency=3.410e-01 ks_quality_p_value=1 major_base=C major_cov=42/72 major_frequency=6.590e-01 minor_base=A minor_cov=59/0 new_cov=59/0 polymorphism_frequency=3.410e-01 polymorphism_score=24.4 prediction=polymorphism ref_cov=42/72 total_cov=101/73 RA 335 . NC_000913 3912074 0 G A consensus_score=332.5 frequency=1 major_base=A major_cov=51/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/43 RA 336 . NC_000913 3931069 0 C T consensus_score=464.9 frequency=1 major_base=T major_cov=58/76 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/76 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/76 RA 337 . NC_000913 3955304 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=254.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/46 major_frequency=9.873e-01 minor_base=C minor_cov=0/1 new_cov=32/46 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=32/47 RA 338 . NC_000913 3988115 0 C T bias_e_value=3710810 bias_p_value=0.799458 consensus_score=323.3 fisher_strand_p_value=0.43956 frequency=1 ks_quality_p_value=0.9961 major_base=T major_cov=51/39 major_frequency=9.890e-01 minor_base=. minor_cov=0/1 new_cov=51/39 polymorphism_frequency=9.890e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=0/0 total_cov=51/40 RA 339 . NC_000913 3993531 0 T C consensus_score=385.0 frequency=1 major_base=C major_cov=57/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=57/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/43 RA 340 . NC_000913 3996049 0 T A consensus_score=291.7 frequency=1 major_base=A major_cov=37/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/45 RA 341 . NC_000913 4011802 0 C T consensus_score=269.0 frequency=1 major_base=T major_cov=26/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/52 RA 342 . NC_000913 4084903 0 T G bias_e_value=1063520 bias_p_value=0.229126 consensus_score=376.2 fisher_strand_p_value=0.0601142 frequency=1 ks_quality_p_value=1 major_base=G major_cov=50/53 major_frequency=9.537e-01 minor_base=T minor_cov=0/5 new_cov=50/53 polymorphism_frequency=9.537e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/5 total_cov=50/58 RA 343 . NC_000913 4092703 0 A G bias_e_value=3766680 bias_p_value=0.811496 consensus_score=444.7 fisher_strand_p_value=0.452991 frequency=1 ks_quality_p_value=0.999411 major_base=G major_cov=64/52 major_frequency=9.915e-01 minor_base=T minor_cov=0/1 new_cov=64/52 polymorphism_frequency=9.915e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/53 RA 344 . NC_000913 4124455 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=422.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=46/66 major_frequency=9.912e-01 minor_base=A minor_cov=0/1 new_cov=46/66 polymorphism_frequency=9.912e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=47/67 RA 345 . NC_000913 4166849 0 G A bias_e_value=2738990 bias_p_value=0.59009 consensus_reject=FREQUENCY_CUTOFF consensus_score=20.5 fisher_strand_p_value=0.271226 frequency=4.528e-01 ks_quality_p_value=0.904612 major_base=G major_cov=16/13 major_frequency=5.472e-01 minor_base=A minor_cov=9/15 new_cov=9/15 polymorphism_frequency=4.528e-01 polymorphism_score=72.0 prediction=polymorphism ref_cov=16/13 total_cov=25/28 RA 346 . NC_000913 4210041 0 G A consensus_score=255.4 frequency=1 major_base=A major_cov=59/71 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/71 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/71 RA 347 . NC_000913 4261040 0 C A bias_e_value=5.15852e-09 bias_p_value=1.11135e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=367.3 fisher_strand_p_value=2.84239e-17 frequency=2.717e-01 ks_quality_p_value=1 major_base=C major_cov=50/84 major_frequency=7.283e-01 minor_base=A minor_cov=50/0 new_cov=50/0 polymorphism_frequency=2.717e-01 polymorphism_score=20.5 prediction=polymorphism ref_cov=50/84 total_cov=100/84 RA 348 . NC_000913 4296380 1 . C bias_e_value=3977900 bias_p_value=0.857001 consensus_score=267.7 fisher_strand_p_value=0.518217 frequency=1 ks_quality_p_value=0.994527 major_base=C major_cov=48/32 major_frequency=9.756e-01 minor_base=. minor_cov=2/0 new_cov=48/32 polymorphism_frequency=9.756e-01 polymorphism_score=-0.2 prediction=consensus ref_cov=2/0 total_cov=51/32 RA 349 . NC_000913 4296380 2 . G bias_e_value=3989540 bias_p_value=0.859509 consensus_score=268.0 fisher_strand_p_value=0.520423 frequency=1 ks_quality_p_value=0.997623 major_base=G major_cov=49/32 major_frequency=9.759e-01 minor_base=. minor_cov=2/0 new_cov=49/32 polymorphism_frequency=9.759e-01 polymorphism_score=0.0 prediction=consensus ref_cov=2/0 total_cov=51/32 RA 350 . NC_000913 4337390 0 C T bias_e_value=4641630 bias_p_value=0.999994 consensus_score=589.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996625 major_base=T major_cov=85/86 major_frequency=9.884e-01 minor_base=. minor_cov=1/1 new_cov=85/86 polymorphism_frequency=9.884e-01 polymorphism_score=0.1 prediction=consensus ref_cov=0/0 total_cov=86/87 RA 351 . NC_000913 4338916 0 C T consensus_score=456.0 frequency=1 major_base=T major_cov=71/57 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=71/57 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=71/57 RA 352 . NC_000913 4349993 0 C T consensus_score=496.6 frequency=1 major_base=T major_cov=74/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=74/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=74/67 RA 353 . NC_000913 4360965 0 C A bias_e_value=7.14037e-08 bias_p_value=1.53832e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=345.6 fisher_strand_p_value=4.22616e-16 frequency=2.420e-01 ks_quality_p_value=1 major_base=C major_cov=36/83 major_frequency=7.580e-01 minor_base=A minor_cov=38/0 new_cov=38/0 polymorphism_frequency=2.420e-01 polymorphism_score=10.4 prediction=polymorphism ref_cov=36/83 total_cov=74/83 RA 354 . NC_000913 4375354 0 G A consensus_score=346.5 frequency=1 major_base=A major_cov=35/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/62 RA 355 . NC_000913 4380367 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=388.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=56/55 major_frequency=9.911e-01 minor_base=G minor_cov=1/0 new_cov=56/55 polymorphism_frequency=9.911e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/55 RA 356 . NC_000913 4425418 0 C A bias_e_value=0.0536918 bias_p_value=1.15674e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=165.2 fisher_strand_p_value=5.16785e-10 frequency=3.267e-01 ks_quality_p_value=1 major_base=C major_cov=28/40 major_frequency=6.733e-01 minor_base=A minor_cov=33/0 new_cov=33/0 polymorphism_frequency=3.267e-01 polymorphism_score=10.4 prediction=polymorphism ref_cov=28/40 total_cov=61/40 RA 357 . NC_000913 4425688 0 C A consensus_score=307.9 frequency=1 major_base=A major_cov=41/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/47 RA 358 . NC_000913 4425696 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=317.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=41/48 major_frequency=9.889e-01 minor_base=G minor_cov=0/1 new_cov=41/48 polymorphism_frequency=9.889e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/49 RA 359 . NC_000913 4427822 0 C A bias_e_value=4.14367e-06 bias_p_value=8.92714e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=261.7 fisher_strand_p_value=2.77094e-14 frequency=3.221e-01 ks_quality_p_value=1 major_base=C major_cov=42/59 major_frequency=6.779e-01 minor_base=A minor_cov=48/0 new_cov=48/0 polymorphism_frequency=3.221e-01 polymorphism_score=13.5 prediction=polymorphism ref_cov=42/59 total_cov=90/59 RA 360 . NC_000913 4436956 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=286.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=34/52 major_frequency=9.885e-01 minor_base=G minor_cov=0/1 new_cov=34/52 polymorphism_frequency=9.885e-01 polymorphism_score=-6.9 prediction=consensus ref_cov=0/0 total_cov=34/53 RA 361 . NC_000913 4436957 0 C T consensus_score=287.1 frequency=1 major_base=T major_cov=34/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/53 RA 362 . NC_000913 4532409 0 T G bias_e_value=3913590 bias_p_value=0.843147 consensus_score=341.7 fisher_strand_p_value=0.495091 frequency=1 ks_quality_p_value=1 major_base=G major_cov=46/45 major_frequency=9.785e-01 minor_base=T minor_cov=2/0 new_cov=46/45 polymorphism_frequency=9.785e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=48/45 RA 363 . NC_000913 4546601 0 C T consensus_score=430.4 frequency=1 major_base=T major_cov=64/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=64/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/60 RA 364 . NC_000913 4578548 0 G A consensus_score=551.8 frequency=1 major_base=A major_cov=84/72 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=84/72 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/72 RA 365 . NC_000913 4585230 0 A G bias_e_value=2856350 bias_p_value=0.615375 consensus_score=305.0 fisher_strand_p_value=0.263833 frequency=1 ks_quality_p_value=1 major_base=G major_cov=36/48 major_frequency=9.655e-01 minor_base=T minor_cov=0/3 new_cov=36/48 polymorphism_frequency=9.655e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/51 MC 366 . NC_000913 62379 88274 0 0 left_inside_cov=0 left_outside_cov=84 right_inside_cov=0 right_outside_cov=84 MC 367 . NC_000913 257908 258683 767 0 left_inside_cov=0 left_outside_cov=123 right_inside_cov=1 right_outside_cov=124 MC 368 . NC_000913 339199 375417 0 0 left_inside_cov=0 left_outside_cov=79 right_inside_cov=2 right_outside_cov=82 MC 369 . NC_000913 1196266 1211469 0 0 left_inside_cov=37 left_outside_cov=42 right_inside_cov=37 right_outside_cov=41 MC 370 . NC_000913 1704350 1704739 0 0 left_inside_cov=0 left_outside_cov=145 right_inside_cov=0 right_outside_cov=145 MC 371 . NC_000913 1978495 1979270 0 767 left_inside_cov=0 left_outside_cov=141 right_inside_cov=1 right_outside_cov=159 MC 372 . NC_000913 2238416 2238434 0 0 left_inside_cov=0 left_outside_cov=114 right_inside_cov=0 right_outside_cov=117 MC 373 . NC_000913 2259357 2262908 0 0 left_inside_cov=0 left_outside_cov=131 right_inside_cov=1 right_outside_cov=131 MC 374 . NC_000913 3423829 3426654 405 2415 left_inside_cov=37 left_outside_cov=42 right_inside_cov=36 right_outside_cov=40 MC 375 . NC_000913 3708467 3708634 0 0 left_inside_cov=0 left_outside_cov=50 right_inside_cov=29 right_outside_cov=79 MC 376 . NC_000913 4283909 4289447 0 0 left_inside_cov=0 left_outside_cov=91 right_inside_cov=0 right_outside_cov=110 JC 377 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 coverage_minus=89 coverage_plus=91 flanking_left=300 flanking_right=300 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=294 key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0 max_left=295 max_left_minus=295 max_left_plus=248 max_min_left=149 max_min_left_minus=149 max_min_left_plus=140 max_min_right=144 max_min_right_minus=141 max_min_right_plus=144 max_pos_hash_score=588 max_right=289 max_right_minus=289 max_right_plus=289 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.62 new_junction_read_count=181 polymorphism_frequency=1.000e+00 pos_hash_score=86 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=180 JC 378 . NC_000913 62378 -1 NC_000913 88275 1 0 alignment_overlap=0 coverage_minus=46 coverage_plus=34 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__62378__-1__NC_000913__88275__1__0____300__300__0__0 max_left=275 max_left_minus=275 max_left_plus=267 max_min_left=147 max_min_left_minus=147 max_min_left_plus=143 max_min_right=120 max_min_right_minus=114 max_min_right_plus=120 max_pos_hash_score=588 max_right=285 max_right_minus=285 max_right_plus=281 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.75 new_junction_read_count=84 polymorphism_frequency=1.000e+00 pos_hash_score=58 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=80 JC 379 . NC_000913 126288 -1 NC_000913 126829 1 0 alignment_overlap=18 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.188e-02 junction_possible_overlap_registers=276 key=NC_000913__126288__-1__NC_000913__126811__1__18____300__300__0__0 max_left=84 max_left_minus=84 max_left_plus=75 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=62 max_min_right_minus=62 max_min_right_plus=62 max_pos_hash_score=552 max_right=62 max_right_minus=62 max_right_plus=62 neg_log10_pos_hash_p_value=9.8 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=4.188e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.73 side_1_overlap=18 side_1_possible_overlap_registers=294 side_1_read_count=81 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.02 side_2_overlap=0 side_2_possible_overlap_registers=276 side_2_read_count=107 side_2_redundant=0 total_non_overlap_reads=3 JC 380 . NC_000913 241630 -1 NC_000913 242288 1 0 alignment_overlap=10 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.077e-02 junction_possible_overlap_registers=284 key=NC_000913__241630__-1__NC_000913__242278__1__10____300__300__0__0 max_left=57 max_left_minus=57 max_left_plus=57 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=22 max_min_right_minus=22 max_min_right_plus=22 max_pos_hash_score=568 max_right=22 max_right_minus=22 max_right_plus=22 neg_log10_pos_hash_p_value=10.0 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.077e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.05 side_1_overlap=10 side_1_possible_overlap_registers=294 side_1_read_count=117 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.71 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=76 side_2_redundant=0 total_non_overlap_reads=3 JC 381 . NC_000913 248193 -1 NC_000913 248295 1 0 alignment_overlap=31 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.887e-02 junction_possible_overlap_registers=263 key=NC_000913__248193__-1__NC_000913__248264__1__31____300__300__0__0 max_left=106 max_left_minus=106 max_left_plus=85 max_min_left=106 max_min_left_minus=106 max_min_left_plus=85 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=526 max_right=191 max_right_minus=191 max_right_plus=183 neg_log10_pos_hash_p_value=9.5 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.887e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.95 side_1_overlap=31 side_1_possible_overlap_registers=294 side_1_read_count=106 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.07 side_2_overlap=0 side_2_possible_overlap_registers=263 side_2_read_count=107 side_2_redundant=0 total_non_overlap_reads=3 JC 382 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=52 coverage_plus=69 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=286 key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0 max_left=288 max_left_minus=288 max_left_plus=282 max_min_left=137 max_min_left_minus=86 max_min_left_plus=137 max_min_right=144 max_min_right_minus=97 max_min_right_plus=144 max_pos_hash_score=572 max_right=287 max_right_minus=287 max_right_plus=271 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.13 new_junction_read_count=123 polymorphism_frequency=1.000e+00 pos_hash_score=66 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=121 JC 383 . NC_000913 257908 1 NC_000913 922386 -1 0 alignment_overlap=0 coverage_minus=80 coverage_plus=32 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__257908__1__NC_000913__922386__-1__0____300__300__1__0 max_left=294 max_left_minus=294 max_left_plus=277 max_min_left=149 max_min_left_minus=149 max_min_left_plus=113 max_min_right=139 max_min_right_minus=139 max_min_right_plus=127 max_pos_hash_score=588 max_right=296 max_right_minus=296 max_right_plus=289 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.03 new_junction_read_count=115 polymorphism_frequency=1.000e+00 pos_hash_score=74 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=112 JC 384 . NC_000913 258675 -1 NC_000913 922378 1 0 alignment_overlap=1 coverage_minus=58 coverage_plus=60 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=293 key=NC_000913__258675__-1__NC_000913__922377__1__1____300__300__1__0 max_left=290 max_left_minus=290 max_left_plus=288 max_min_left=146 max_min_left_minus=146 max_min_left_plus=143 max_min_right=147 max_min_right_minus=147 max_min_right_plus=124 max_pos_hash_score=586 max_right=292 max_right_minus=292 max_right_plus=287 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.07 new_junction_read_count=119 polymorphism_frequency=1.000e+00 pos_hash_score=77 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=118 JC 385 . NC_000913 339198 -1 NC_000913 375418 1 0 alignment_overlap=4 coverage_minus=46 coverage_plus=29 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=290 key=NC_000913__339198__-1__NC_000913__375414__1__4____300__300__0__0 max_left=294 max_left_minus=290 max_left_plus=294 max_min_left=139 max_min_left_minus=139 max_min_left_plus=123 max_min_right=143 max_min_right_minus=143 max_min_right_plus=137 max_pos_hash_score=580 max_right=284 max_right_minus=282 max_right_plus=284 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.72 new_junction_read_count=79 polymorphism_frequency=1.000e+00 pos_hash_score=56 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=75 JC 386 . NC_000913 381260 1 NC_000913 789812 1 0 alignment_overlap=0 coverage_minus=54 coverage_plus=51 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__381260__1__NC_000913__789812__1__0____300__300__1__0 max_left=296 max_left_minus=290 max_left_plus=296 max_min_left=145 max_min_left_minus=145 max_min_left_plus=136 max_min_right=142 max_min_right_minus=142 max_min_right_plus=129 max_pos_hash_score=588 max_right=294 max_right_minus=294 max_right_plus=275 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.98 new_junction_read_count=109 polymorphism_frequency=1.000e+00 pos_hash_score=65 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=105 JC 387 . NC_000913 381260 1 NC_000913 1093485 -1 0 alignment_overlap=2 coverage_minus=83 coverage_plus=39 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=292 key=NC_000913__381260__1__NC_000913__1093487__-1__2____300__300__1__0 max_left=295 max_left_minus=285 max_left_plus=295 max_min_left=140 max_min_left_minus=135 max_min_left_plus=140 max_min_right=145 max_min_right_minus=145 max_min_right_plus=139 max_pos_hash_score=584 max_right=295 max_right_minus=295 max_right_plus=271 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.13 new_junction_read_count=125 polymorphism_frequency=1.000e+00 pos_hash_score=82 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=122 JC 388 . NC_000913 382590 -1 NC_000913 789816 -1 0 alignment_overlap=2 coverage_minus=54 coverage_plus=40 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=292 key=NC_000913__382590__-1__NC_000913__789818__-1__2____300__300__1__0 max_left=291 max_left_minus=291 max_left_plus=290 max_min_left=145 max_min_left_minus=142 max_min_left_plus=145 max_min_right=147 max_min_right_minus=138 max_min_right_plus=147 max_pos_hash_score=584 max_right=295 max_right_minus=295 max_right_plus=287 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.86 new_junction_read_count=95 polymorphism_frequency=1.000e+00 pos_hash_score=63 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=94 JC 389 . NC_000913 623003 -1 NC_000913 623409 1 0 alignment_overlap=17 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.943e-02 junction_possible_overlap_registers=277 key=NC_000913__623003__-1__NC_000913__623392__1__17____300__300__0__0 max_left=101 max_left_minus=101 max_left_plus=82 max_min_left=101 max_min_left_minus=101 max_min_left_plus=82 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=554 max_right=201 max_right_minus=181 max_right_plus=201 neg_log10_pos_hash_p_value=9.8 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.943e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.59 side_1_overlap=17 side_1_possible_overlap_registers=294 side_1_read_count=66 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.80 side_2_overlap=0 side_2_possible_overlap_registers=277 side_2_read_count=84 side_2_redundant=0 total_non_overlap_reads=3 JC 390 . NC_000913 696441 -1 NC_000913 696877 1 0 alignment_overlap=12 coverage_minus=4 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=6.936e-02 junction_possible_overlap_registers=282 key=NC_000913__696441__-1__NC_000913__696865__1__12____300__300__0__0 max_left=230 max_left_minus=230 max_left_plus=125 max_min_left=115 max_min_left_minus=115 max_min_left_plus=115 max_min_right=87 max_min_right_minus=87 max_min_right_plus=87 max_pos_hash_score=564 max_right=118 max_right_minus=118 max_right_plus=118 neg_log10_pos_hash_p_value=7.7 new_junction_coverage=0.07 new_junction_read_count=7 polymorphism_frequency=6.936e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.91 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=102 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.84 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=90 side_2_redundant=0 total_non_overlap_reads=7 JC 391 . NC_000913 696504 -1 NC_000913 696940 1 0 alignment_overlap=29 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.123e-02 junction_possible_overlap_registers=265 key=NC_000913__696504__-1__NC_000913__696911__1__29____300__300__0__0 max_left=172 max_left_minus=172 max_left_plus=116 max_min_left=116 max_min_left_minus=40 max_min_left_plus=116 max_min_right=99 max_min_right_minus=99 max_min_right_plus=0 max_pos_hash_score=530 max_right=154 max_right_minus=99 max_right_plus=154 neg_log10_pos_hash_p_value=9.6 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.123e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.99 side_1_overlap=29 side_1_possible_overlap_registers=294 side_1_read_count=110 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.87 side_2_overlap=0 side_2_possible_overlap_registers=265 side_2_read_count=87 side_2_redundant=0 total_non_overlap_reads=3 JC 392 . NC_000913 696505 -1 NC_000913 696832 1 0 alignment_overlap=30 coverage_minus=5 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=7.408e-02 junction_possible_overlap_registers=264 key=NC_000913__696505__-1__NC_000913__696802__1__30____300__300__0__0 max_left=188 max_left_minus=188 max_left_plus=129 max_min_left=129 max_min_left_minus=58 max_min_left_plus=129 max_min_right=99 max_min_right_minus=99 max_min_right_plus=0 max_pos_hash_score=528 max_right=229 max_right_minus=229 max_right_plus=141 neg_log10_pos_hash_p_value=7.4 new_junction_coverage=0.07 new_junction_read_count=7 polymorphism_frequency=7.408e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.97 side_1_overlap=30 side_1_possible_overlap_registers=294 side_1_read_count=108 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.78 side_2_overlap=0 side_2_possible_overlap_registers=264 side_2_read_count=78 side_2_redundant=0 total_non_overlap_reads=7 JC 393 . NC_000913 780554 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=4 coverage_plus=0 flanking_left=300 flanking_right=300 frequency=2.937e-02 junction_possible_overlap_registers=290 key=NC_000913__780554__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0 max_left=62 max_left_minus=62 max_left_plus=0 max_min_left=62 max_min_left_minus=62 max_min_left_plus=0 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=580 max_right=271 max_right_minus=271 max_right_plus=0 neg_log10_pos_hash_p_value=10.1 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=2.937e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.41 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=157 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=111 side_2_redundant=0 total_non_overlap_reads=4 unique_read_sequence=GAAG JC 394 . NC_000913 781222 -1 NC_000913 781544 1 0 alignment_overlap=18 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.611e-02 junction_possible_overlap_registers=276 key=NC_000913__781222__-1__NC_000913__781526__1__18____300__300__0__0 max_left=189 max_left_minus=189 max_left_plus=189 max_min_left=111 max_min_left_minus=111 max_min_left_plus=97 max_min_right=27 max_min_right_minus=27 max_min_right_plus=27 max_pos_hash_score=552 max_right=185 max_right_minus=170 max_right_plus=185 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=4.611e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.95 side_1_overlap=18 side_1_possible_overlap_registers=294 side_1_read_count=106 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.63 side_2_overlap=0 side_2_possible_overlap_registers=276 side_2_read_count=66 side_2_redundant=0 total_non_overlap_reads=4 JC 395 . NC_000913 781270 -1 NC_000913 781759 1 0 alignment_overlap=1 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.959e-02 junction_possible_overlap_registers=293 key=NC_000913__781270__-1__NC_000913__781758__1__1____300__300__0__0 max_left=129 max_left_minus=129 max_left_plus=129 max_min_left=129 max_min_left_minus=129 max_min_left_plus=129 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=586 max_right=148 max_right_minus=148 max_right_plus=148 neg_log10_pos_hash_p_value=10.1 new_junction_coverage=0.05 new_junction_read_count=5 polymorphism_frequency=4.959e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.89 side_1_overlap=1 side_1_possible_overlap_registers=294 side_1_read_count=99 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.84 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=93 side_2_redundant=0 total_non_overlap_reads=3 JC 396 . NC_000913 781369 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=6 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=8.248e-02 junction_possible_overlap_registers=290 key=NC_000913__781369__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0 max_left=285 max_left_minus=285 max_left_plus=103 max_min_left=62 max_min_left_minus=62 max_min_left_plus=0 max_min_right=13 max_min_right_minus=13 max_min_right_plus=13 max_pos_hash_score=580 max_right=271 max_right_minus=271 max_right_plus=13 neg_log10_pos_hash_p_value=8.4 new_junction_coverage=0.08 new_junction_read_count=9 polymorphism_frequency=8.248e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.83 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=92 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=111 side_2_redundant=0 total_non_overlap_reads=7 unique_read_sequence=GAAG JC 397 . NC_000913 781577 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=6 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=9.782e-02 junction_possible_overlap_registers=290 key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0 max_left=199 max_left_minus=199 max_left_plus=107 max_min_left=107 max_min_left_minus=62 max_min_left_plus=107 max_min_right=76 max_min_right_minus=76 max_min_right_plus=0 max_pos_hash_score=580 max_right=271 max_right_minus=271 max_right_plus=215 neg_log10_pos_hash_p_value=7.9 new_junction_coverage=0.09 new_junction_read_count=10 polymorphism_frequency=9.782e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.68 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=76 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=111 side_2_redundant=0 total_non_overlap_reads=8 unique_read_sequence=GAAG JC 398 . NC_000913 1093481 1 NC_000913 1651548 -1 0 alignment_overlap=0 coverage_minus=66 coverage_plus=68 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1093481__1__NC_000913__1651548__-1__0____300__300__0__1 max_left=294 max_left_minus=264 max_left_plus=294 max_min_left=148 max_min_left_minus=148 max_min_left_plus=140 max_min_right=150 max_min_right_minus=150 max_min_right_plus=145 max_pos_hash_score=588 max_right=296 max_right_minus=296 max_right_plus=279 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.21 new_junction_read_count=135 polymorphism_frequency=9.852e-01 pos_hash_score=82 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=2 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=134 JC 399 . NC_000913 1166125 -1 NC_000913 1166621 1 0 alignment_overlap=15 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.779e-02 junction_possible_overlap_registers=279 key=NC_000913__1166125__-1__NC_000913__1166606__1__15____300__300__0__0 max_left=77 max_left_minus=77 max_left_plus=75 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=65 max_min_right_minus=65 max_min_right_plus=65 max_pos_hash_score=558 max_right=65 max_right_minus=65 max_right_plus=65 neg_log10_pos_hash_p_value=9.9 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.779e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.08 side_1_overlap=15 side_1_possible_overlap_registers=294 side_1_read_count=120 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.91 side_2_overlap=0 side_2_possible_overlap_registers=279 side_2_read_count=96 side_2_redundant=0 total_non_overlap_reads=3 JC 400 . NC_000913 1286906 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=3 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.077e-01 junction_possible_overlap_registers=274 key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=253 max_left_minus=253 max_left_plus=253 max_min_left=12 max_min_left_minus=12 max_min_left_plus=4 max_min_right=5 max_min_right_minus=5 max_min_right_plus=5 max_pos_hash_score=548 max_right=276 max_right_minus=263 max_right_plus=276 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.08 new_junction_read_count=8 polymorphism_frequency=1.077e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.71 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=79 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.57 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=59 side_2_redundant=0 total_non_overlap_reads=7 JC 401 . NC_000913 1287084 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=4 coverage_plus=7 flanking_left=300 flanking_right=300 frequency=1.672e-01 junction_possible_overlap_registers=274 key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=206 max_left_minus=206 max_left_plus=185 max_min_left=124 max_min_left_minus=124 max_min_left_plus=122 max_min_right=49 max_min_right_minus=49 max_min_right_plus=49 max_pos_hash_score=548 max_right=276 max_right_minus=263 max_right_plus=276 neg_log10_pos_hash_p_value=6.0 new_junction_coverage=0.12 new_junction_read_count=12 polymorphism_frequency=1.672e-01 pos_hash_score=11 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.58 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=65 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.57 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=59 side_2_redundant=0 total_non_overlap_reads=11 JC 402 . NC_000913 1287329 -1 NC_000913 1287624 1 0 alignment_overlap=87 coverage_minus=3 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.572e-01 junction_possible_overlap_registers=207 key=NC_000913__1287329__-1__NC_000913__1287537__1__87____300__300__0__0 max_left=173 max_left_minus=173 max_left_plus=149 max_min_left=63 max_min_left_minus=63 max_min_left_plus=4 max_min_right=63 max_min_right_minus=40 max_min_right_plus=63 max_pos_hash_score=414 max_right=209 max_right_minus=196 max_right_plus=209 neg_log10_pos_hash_p_value=5.6 new_junction_coverage=0.11 new_junction_read_count=9 polymorphism_frequency=1.572e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.59 side_1_overlap=87 side_1_possible_overlap_registers=294 side_1_read_count=66 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.64 side_2_overlap=0 side_2_possible_overlap_registers=207 side_2_read_count=50 side_2_redundant=0 total_non_overlap_reads=8 JC 403 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=75 coverage_plus=78 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=290 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0 max_left=294 max_left_minus=270 max_left_plus=294 max_min_left=146 max_min_left_minus=145 max_min_left_plus=146 max_min_right=143 max_min_right_minus=143 max_min_right_plus=140 max_pos_hash_score=580 max_right=287 max_right_minus=283 max_right_plus=287 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.41 new_junction_read_count=155 polymorphism_frequency=1.000e+00 pos_hash_score=77 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=153 JC 404 . NC_000913 1397238 -1 NC_000913 1978494 -1 0 alignment_overlap=0 coverage_minus=72 coverage_plus=68 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0 max_left=294 max_left_minus=283 max_left_plus=294 max_min_left=142 max_min_left_minus=138 max_min_left_plus=142 max_min_right=146 max_min_right_minus=146 max_min_right_plus=135 max_pos_hash_score=588 max_right=296 max_right_minus=296 max_right_plus=296 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.26 new_junction_read_count=140 polymorphism_frequency=1.000e+00 pos_hash_score=83 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=140 JC 405 . NC_000913 1411899 1 NC_000913 1434958 -1 0 alignment_overlap=26 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=3.967e-02 junction_possible_overlap_registers=268 key=NC_000913__1411899__1__NC_000913__1434984__-1__26____300__300__0__0 max_left=182 max_left_minus=137 max_left_plus=182 max_min_left=93 max_min_left_minus=43 max_min_left_plus=93 max_min_right=137 max_min_right_minus=137 max_min_right_plus=92 max_pos_hash_score=536 max_right=231 max_right_minus=231 max_right_plus=181 neg_log10_pos_hash_p_value=7.9 new_junction_coverage=0.06 new_junction_read_count=6 polymorphism_frequency=3.967e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.26 side_1_overlap=26 side_1_possible_overlap_registers=294 side_1_read_count=141 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.59 side_2_overlap=0 side_2_possible_overlap_registers=268 side_2_read_count=162 side_2_redundant=0 total_non_overlap_reads=6 JC 406 . NC_000913 1651548 -1 NC_000913 1651855 -1 0 alignment_overlap=0 coverage_minus=53 coverage_plus=44 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1651548__-1__NC_000913__1651855__-1__0____300__300__1__0 max_left=293 max_left_minus=293 max_left_plus=286 max_min_left=149 max_min_left_minus=149 max_min_left_plus=139 max_min_right=141 max_min_right_minus=140 max_min_right_plus=141 max_pos_hash_score=588 max_right=295 max_right_minus=295 max_right_plus=292 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.89 new_junction_read_count=99 polymorphism_frequency=1.000e+00 pos_hash_score=61 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=97 JC 407 . NC_000913 1651851 1 NC_000913 2070271 -1 0 alignment_overlap=0 coverage_minus=53 coverage_plus=76 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1651851__1__NC_000913__2070271__-1__0____300__300__0__1 max_left=298 max_left_minus=298 max_left_plus=292 max_min_left=142 max_min_left_minus=134 max_min_left_plus=142 max_min_right=148 max_min_right_minus=148 max_min_right_plus=143 max_pos_hash_score=588 max_right=297 max_right_minus=296 max_right_plus=297 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.18 new_junction_read_count=131 polymorphism_frequency=1.000e+00 pos_hash_score=82 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=129 JC 408 . NC_000913 1704349 -1 NC_000913 1704740 1 0 alignment_overlap=2 coverage_minus=79 coverage_plus=65 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=292 key=NC_000913__1704349__-1__NC_000913__1704738__1__2____300__300__0__0 max_left=292 max_left_minus=292 max_left_plus=279 max_min_left=147 max_min_left_minus=147 max_min_left_plus=141 max_min_right=148 max_min_right_minus=148 max_min_right_plus=134 max_pos_hash_score=584 max_right=296 max_right_minus=289 max_right_plus=296 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.31 new_junction_read_count=145 polymorphism_frequency=1.000e+00 pos_hash_score=87 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=2 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=292 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=144 JC 409 . NC_000913 1817211 -1 NC_000913 1817664 1 0 alignment_overlap=10 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.447e-02 junction_possible_overlap_registers=284 key=NC_000913__1817211__-1__NC_000913__1817654__1__10____300__300__0__0 max_left=87 max_left_minus=87 max_left_plus=87 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=71 max_min_right_minus=57 max_min_right_plus=71 max_pos_hash_score=568 max_right=71 max_right_minus=57 max_right_plus=71 neg_log10_pos_hash_p_value=10.0 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.447e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.27 side_1_overlap=10 side_1_possible_overlap_registers=294 side_1_read_count=142 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.95 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=102 side_2_redundant=0 total_non_overlap_reads=3 JC 410 . NC_000913 1819007 1 NC_000913 1979270 -1 0 alignment_overlap=1 coverage_minus=1 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=2.703e-02 junction_possible_overlap_registers=293 key=NC_000913__1819006__1__NC_000913__1979270__-1__1____300__300__0__1 max_left=268 max_left_minus=268 max_left_plus=224 max_min_left=108 max_min_left_minus=0 max_min_left_plus=108 max_min_right=75 max_min_right_minus=31 max_min_right_plus=75 max_pos_hash_score=586 max_right=204 max_right_minus=31 max_right_plus=204 neg_log10_pos_hash_p_value=9.5 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=2.703e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.30 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=144 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=4 JC 411 . NC_000913 1819015 -1 NC_000913 1978503 1 0 alignment_overlap=0 coverage_minus=1 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=2.703e-02 junction_possible_overlap_registers=294 key=NC_000913__1819015__-1__NC_000913__1978503__1__0____300__300__0__1 max_left=279 max_left_minus=79 max_left_plus=279 max_min_left=137 max_min_left_minus=79 max_min_left_plus=137 max_min_right=102 max_min_right_minus=0 max_min_right_plus=102 max_pos_hash_score=588 max_right=220 max_right_minus=220 max_right_plus=163 neg_log10_pos_hash_p_value=9.5 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=2.703e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.29 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=144 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=4 JC 412 . NC_000913 1979271 1 NC_000913 2102947 -1 0 alignment_overlap=0 coverage_minus=64 coverage_plus=86 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1 max_left=299 max_left_minus=294 max_left_plus=299 max_min_left=140 max_min_left_minus=127 max_min_left_plus=140 max_min_right=145 max_min_right_minus=145 max_min_right_plus=134 max_pos_hash_score=588 max_right=299 max_right_minus=299 max_right_plus=292 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.41 new_junction_read_count=157 polymorphism_frequency=9.937e-01 pos_hash_score=86 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.01 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=150 JC 413 . NC_000913 2068941 1 NC_000913 2317414 1 0 alignment_overlap=0 coverage_minus=51 coverage_plus=57 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2068941__1__NC_000913__2317414__1__0____300__300__1__0 max_left=289 max_left_minus=289 max_left_plus=280 max_min_left=142 max_min_left_minus=142 max_min_left_plus=120 max_min_right=147 max_min_right_minus=140 max_min_right_plus=147 max_pos_hash_score=588 max_right=293 max_right_minus=283 max_right_plus=293 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.00 new_junction_read_count=112 polymorphism_frequency=1.000e+00 pos_hash_score=65 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=108 JC 414 . NC_000913 2238415 -1 NC_000913 2238435 1 0 alignment_overlap=0 coverage_minus=56 coverage_plus=59 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2238415__-1__NC_000913__2238435__1__0____300__300__0__0 max_left=298 max_left_minus=295 max_left_plus=298 max_min_left=143 max_min_left_minus=143 max_min_left_plus=138 max_min_right=149 max_min_right_minus=149 max_min_right_plus=142 max_pos_hash_score=588 max_right=298 max_right_minus=298 max_right_plus=297 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.04 new_junction_read_count=116 polymorphism_frequency=1.000e+00 pos_hash_score=74 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=115 JC 415 . NC_000913 2259356 -1 NC_000913 2262909 1 0 alignment_overlap=1 coverage_minus=56 coverage_plus=70 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=293 key=NC_000913__2259356__-1__NC_000913__2262908__1__1____300__300__0__0 max_left=296 max_left_minus=282 max_left_plus=296 max_min_left=147 max_min_left_minus=137 max_min_left_plus=147 max_min_right=147 max_min_right_minus=116 max_min_right_plus=147 max_pos_hash_score=586 max_right=295 max_right_minus=293 max_right_plus=295 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.18 new_junction_read_count=131 polymorphism_frequency=1.000e+00 pos_hash_score=76 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=1 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=126 JC 416 . NC_000913 2317418 -1 NC_000913 2997691 -1 0 alignment_overlap=1 coverage_minus=45 coverage_plus=60 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=293 key=NC_000913__2317419__-1__NC_000913__2997691__-1__1____300__300__0__1 max_left=293 max_left_minus=293 max_left_plus=293 max_min_left=148 max_min_left_minus=148 max_min_left_plus=137 max_min_right=142 max_min_right_minus=135 max_min_right_plus=142 max_pos_hash_score=586 max_right=295 max_right_minus=295 max_right_plus=295 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.95 new_junction_read_count=105 polymorphism_frequency=1.000e+00 pos_hash_score=69 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=288 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=105 JC 417 . NC_000913 2521006 -1 NC_000913 2521249 1 0 alignment_overlap=76 coverage_minus=4 coverage_plus=7 flanking_left=300 flanking_right=300 frequency=1.399e-01 junction_possible_overlap_registers=218 key=NC_000913__2521006__-1__NC_000913__2521173__1__76____300__300__0__0 max_left=218 max_left_minus=218 max_left_plus=195 max_min_left=108 max_min_left_minus=108 max_min_left_plus=15 max_min_right=85 max_min_right_minus=85 max_min_right_plus=66 max_pos_hash_score=436 max_right=222 max_right_minus=135 max_right_plus=222 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.13 new_junction_read_count=11 polymorphism_frequency=1.399e-01 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.00 side_1_overlap=76 side_1_possible_overlap_registers=294 side_1_read_count=111 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.64 side_2_overlap=0 side_2_possible_overlap_registers=218 side_2_read_count=53 side_2_redundant=0 total_non_overlap_reads=11 JC 418 . NC_000913 2653383 -1 NC_000913 2653710 1 0 alignment_overlap=11 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.327e-02 junction_possible_overlap_registers=283 key=NC_000913__2653383__-1__NC_000913__2653699__1__11____300__300__0__0 max_left=164 max_left_minus=164 max_left_plus=151 max_min_left=19 max_min_left_minus=19 max_min_left_plus=19 max_min_right=123 max_min_right_minus=123 max_min_right_plus=123 max_pos_hash_score=566 max_right=123 max_right_minus=123 max_right_plus=123 neg_log10_pos_hash_p_value=9.3 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=3.327e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.09 side_1_overlap=11 side_1_possible_overlap_registers=294 side_1_read_count=122 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.07 side_2_overlap=0 side_2_possible_overlap_registers=283 side_2_read_count=115 side_2_redundant=0 total_non_overlap_reads=4 JC 419 . NC_000913 2653419 -1 NC_000913 2653746 1 0 alignment_overlap=25 coverage_minus=8 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.213e-01 junction_possible_overlap_registers=269 key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0 max_left=217 max_left_minus=217 max_left_plus=217 max_min_left=5 max_min_left_minus=5 max_min_left_plus=0 max_min_right=134 max_min_right_minus=116 max_min_right_plus=134 max_pos_hash_score=538 max_right=259 max_right_minus=259 max_right_plus=134 neg_log10_pos_hash_p_value=5.6 new_junction_coverage=0.15 new_junction_read_count=15 polymorphism_frequency=1.213e-01 pos_hash_score=12 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.03 side_1_overlap=25 side_1_possible_overlap_registers=294 side_1_read_count=115 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.10 side_2_overlap=0 side_2_possible_overlap_registers=269 side_2_read_count=112 side_2_redundant=0 total_non_overlap_reads=13 JC 420 . NC_000913 2653549 -1 NC_000913 2653872 1 0 alignment_overlap=16 coverage_minus=4 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=7.055e-02 junction_possible_overlap_registers=278 key=NC_000913__2653549__-1__NC_000913__2653856__1__16____300__300__0__0 max_left=268 max_left_minus=268 max_left_plus=144 max_min_left=115 max_min_left_minus=115 max_min_left_plus=110 max_min_right=139 max_min_right_minus=102 max_min_right_plus=139 max_pos_hash_score=556 max_right=183 max_right_minus=168 max_right_plus=183 neg_log10_pos_hash_p_value=7.2 new_junction_coverage=0.08 new_junction_read_count=8 polymorphism_frequency=7.055e-02 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.02 side_1_overlap=16 side_1_possible_overlap_registers=294 side_1_read_count=114 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.98 side_2_overlap=0 side_2_possible_overlap_registers=278 side_2_read_count=103 side_2_redundant=0 total_non_overlap_reads=8 JC 421 . NC_000913 2817942 -1 NC_000913 2818492 1 0 alignment_overlap=20 coverage_minus=6 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.047e-01 junction_possible_overlap_registers=274 key=NC_000913__2817942__-1__NC_000913__2818472__1__20____300__300__0__0 max_left=182 max_left_minus=182 max_left_plus=182 max_min_left=116 max_min_left_minus=116 max_min_left_plus=6 max_min_right=120 max_min_right_minus=114 max_min_right_plus=120 max_pos_hash_score=548 max_right=277 max_right_minus=266 max_right_plus=277 neg_log10_pos_hash_p_value=6.4 new_junction_coverage=0.11 new_junction_read_count=11 polymorphism_frequency=1.047e-01 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.03 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=115 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.78 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=81 side_2_redundant=0 total_non_overlap_reads=10 JC 422 . NC_000913 2913392 1 NC_000913 2997691 -1 0 alignment_overlap=0 coverage_minus=55 coverage_plus=67 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1 max_left=295 max_left_minus=285 max_left_plus=295 max_min_left=145 max_min_left_minus=145 max_min_left_plus=137 max_min_right=147 max_min_right_minus=132 max_min_right_plus=147 max_pos_hash_score=588 max_right=297 max_right_minus=296 max_right_plus=297 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.11 new_junction_read_count=124 polymorphism_frequency=1.000e+00 pos_hash_score=70 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=122 JC 423 . NC_000913 2913396 -1 NC_000913 2996361 1 0 alignment_overlap=0 coverage_minus=69 coverage_plus=60 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1 max_left=295 max_left_minus=293 max_left_plus=295 max_min_left=149 max_min_left_minus=146 max_min_left_plus=149 max_min_right=139 max_min_right_minus=132 max_min_right_plus=139 max_pos_hash_score=588 max_right=298 max_right_minus=296 max_right_plus=298 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.21 new_junction_read_count=135 polymorphism_frequency=1.000e+00 pos_hash_score=81 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=129 JC 424 . NC_000913 2947467 -1 NC_000913 2947688 1 0 alignment_overlap=83 coverage_minus=4 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1.350e-01 junction_possible_overlap_registers=211 key=NC_000913__2947467__-1__NC_000913__2947605__1__83____300__300__0__0 max_left=168 max_left_minus=168 max_left_plus=122 max_min_left=81 max_min_left_minus=81 max_min_left_plus=32 max_min_right=95 max_min_right_minus=48 max_min_right_plus=95 max_pos_hash_score=422 max_right=197 max_right_minus=197 max_right_plus=185 neg_log10_pos_hash_p_value=6.1 new_junction_coverage=0.10 new_junction_read_count=8 polymorphism_frequency=1.350e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.56 side_1_overlap=83 side_1_possible_overlap_registers=294 side_1_read_count=62 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.72 side_2_overlap=0 side_2_possible_overlap_registers=211 side_2_read_count=58 side_2_redundant=0 total_non_overlap_reads=7 JC 425 . NC_000913 3270072 1 NC_000913 4137788 1 -25 alignment_overlap=-25 coverage_minus=5 coverage_plus=0 flanking_left=300 flanking_right=300 frequency=5.665e-02 junction_possible_overlap_registers=269 key=NC_000913__3270072__1__NC_000913__4137788__1__-25__CAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0 max_left=273 max_left_minus=273 max_left_plus=0 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=12 max_min_right_minus=12 max_min_right_plus=0 max_pos_hash_score=538 max_right=12 max_right_minus=12 max_right_plus=0 neg_log10_pos_hash_p_value=8.4 new_junction_coverage=0.05 new_junction_read_count=5 polymorphism_frequency=5.665e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.82 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=91 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.82 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=91 side_2_redundant=0 total_non_overlap_reads=5 unique_read_sequence=CAGATTGTTGAGTGCGCTTTATTCA JC 426 . NC_000913 3583428 1 NC_000913 4283908 -1 0 alignment_overlap=0 coverage_minus=53 coverage_plus=35 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3583428__1__NC_000913__4283908__-1__0____300__300__1__0 max_left=289 max_left_minus=289 max_left_plus=285 max_min_left=148 max_min_left_minus=148 max_min_left_plus=136 max_min_right=143 max_min_right_minus=143 max_min_right_plus=134 max_pos_hash_score=588 max_right=289 max_right_minus=271 max_right_plus=289 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.82 new_junction_read_count=91 polymorphism_frequency=1.000e+00 pos_hash_score=57 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=88 JC 427 . NC_000913 3584195 -1 NC_000913 4289448 1 0 alignment_overlap=0 coverage_minus=66 coverage_plus=42 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3584195__-1__NC_000913__4289448__1__0____300__300__1__0 max_left=286 max_left_minus=286 max_left_plus=285 max_min_left=144 max_min_left_minus=144 max_min_left_plus=121 max_min_right=148 max_min_right_minus=148 max_min_right_plus=147 max_pos_hash_score=588 max_right=292 max_right_minus=292 max_right_plus=288 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.99 new_junction_read_count=110 polymorphism_frequency=1.000e+00 pos_hash_score=71 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=108 JC 428 . NC_000913 3648146 -1 NC_000913 3648378 1 0 alignment_overlap=58 coverage_minus=7 coverage_plus=8 flanking_left=300 flanking_right=300 frequency=1.439e-01 junction_possible_overlap_registers=236 key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0 max_left=186 max_left_minus=175 max_left_plus=186 max_min_left=100 max_min_left_minus=100 max_min_left_plus=65 max_min_right=77 max_min_right_minus=77 max_min_right_plus=58 max_pos_hash_score=472 max_right=225 max_right_minus=199 max_right_plus=225 neg_log10_pos_hash_p_value=4.6 new_junction_coverage=0.17 new_junction_read_count=15 polymorphism_frequency=1.439e-01 pos_hash_score=13 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.98 side_1_overlap=58 side_1_possible_overlap_registers=294 side_1_read_count=109 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.02 side_2_overlap=0 side_2_possible_overlap_registers=236 side_2_read_count=91 side_2_redundant=0 total_non_overlap_reads=15 JC 429 . NC_000913 3708466 -1 NC_000913 3708635 1 0 alignment_overlap=108 coverage_minus=25 coverage_plus=23 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=186 key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0 max_left=186 max_left_minus=186 max_left_plus=186 max_min_left=94 max_min_left_minus=92 max_min_left_plus=94 max_min_right=90 max_min_right_minus=73 max_min_right_plus=90 max_pos_hash_score=372 max_right=184 max_right_minus=184 max_right_plus=183 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.71 new_junction_read_count=50 polymorphism_frequency=1.000e+00 pos_hash_score=35 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=108 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=186 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=48 JC 430 . NC_000913 3822646 1 NC_000913 3822651 -1 0 alignment_overlap=0 coverage_minus=35 coverage_plus=57 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0 max_left=297 max_left_minus=275 max_left_plus=297 max_min_left=147 max_min_left_minus=142 max_min_left_plus=147 max_min_right=147 max_min_right_minus=146 max_min_right_plus=147 max_pos_hash_score=588 max_right=290 max_right_minus=290 max_right_plus=288 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.83 new_junction_read_count=93 polymorphism_frequency=9.538e-01 pos_hash_score=61 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.03 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=3 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.05 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=6 side_2_redundant=0 total_non_overlap_reads=92 JC 431 . NC_000913 3938983 1 NC_000913 4498181 1 0 alignment_overlap=0 coverage_minus=49 coverage_plus=73 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3938983__1__NC_000913__4498181__1__0____300__300__0__1 max_left=299 max_left_minus=298 max_left_plus=299 max_min_left=140 max_min_left_minus=140 max_min_left_plus=137 max_min_right=146 max_min_right_minus=146 max_min_right_plus=137 max_pos_hash_score=588 max_right=297 max_right_minus=296 max_right_plus=297 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.12 new_junction_read_count=125 polymorphism_frequency=1.000e+00 pos_hash_score=79 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=122 JC 432 . NC_000913 3938987 -1 NC_000913 4499511 -1 0 alignment_overlap=0 coverage_minus=38 coverage_plus=68 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3938987__-1__NC_000913__4499511__-1__0____300__300__0__1 max_left=295 max_left_minus=293 max_left_plus=295 max_min_left=143 max_min_left_minus=143 max_min_left_plus=139 max_min_right=149 max_min_right_minus=144 max_min_right_plus=149 max_pos_hash_score=588 max_right=296 max_right_minus=296 max_right_plus=293 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.98 new_junction_read_count=109 polymorphism_frequency=1.000e+00 pos_hash_score=70 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=106 JC 433 . NC_000913 4027845 -1 NC_000913 4028275 1 0 alignment_overlap=13 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=5.995e-02 junction_possible_overlap_registers=281 key=NC_000913__4027845__-1__NC_000913__4028262__1__13____300__300__0__0 max_left=108 max_left_minus=108 max_left_plus=85 max_min_left=108 max_min_left_minus=108 max_min_left_plus=68 max_min_right=81 max_min_right_minus=81 max_min_right_plus=81 max_pos_hash_score=562 max_right=215 max_right_minus=173 max_right_plus=215 neg_log10_pos_hash_p_value=8.2 new_junction_coverage=0.06 new_junction_read_count=6 polymorphism_frequency=5.995e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.98 side_1_overlap=13 side_1_possible_overlap_registers=294 side_1_read_count=109 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.79 side_2_overlap=0 side_2_possible_overlap_registers=281 side_2_read_count=84 side_2_redundant=0 total_non_overlap_reads=6 JC 434 . NC_000913 4055210 -1 NC_000913 4055586 1 0 alignment_overlap=9 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.629e-02 junction_possible_overlap_registers=285 key=NC_000913__4055210__-1__NC_000913__4055577__1__9____300__300__0__0 max_left=116 max_left_minus=116 max_left_plus=116 max_min_left=60 max_min_left_minus=60 max_min_left_plus=60 max_min_right=12 max_min_right_minus=12 max_min_right_plus=12 max_pos_hash_score=570 max_right=207 max_right_minus=207 max_right_plus=207 neg_log10_pos_hash_p_value=9.3 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=4.629e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=9 side_1_possible_overlap_registers=294 side_1_read_count=71 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.89 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=96 side_2_redundant=0 total_non_overlap_reads=4 JC 435 . NC_000913 4094350 -1 NC_000913 4094719 1 0 alignment_overlap=41 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=8.817e-02 junction_possible_overlap_registers=253 key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0 max_left=204 max_left_minus=204 max_left_plus=114 max_min_left=124 max_min_left_minus=124 max_min_left_plus=114 max_min_right=9 max_min_right_minus=9 max_min_right_plus=0 max_pos_hash_score=506 max_right=223 max_right_minus=223 max_right_plus=223 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.06 new_junction_read_count=6 polymorphism_frequency=8.817e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=41 side_1_possible_overlap_registers=294 side_1_read_count=71 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.66 side_2_overlap=0 side_2_possible_overlap_registers=253 side_2_read_count=63 side_2_redundant=0 total_non_overlap_reads=6 JC 436 . NC_000913 4392437 -1 NC_000913 4392661 1 0 alignment_overlap=78 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=7.586e-02 junction_possible_overlap_registers=216 key=NC_000913__4392437__-1__NC_000913__4392583__1__78____300__300__0__0 max_left=195 max_left_minus=195 max_left_plus=121 max_min_left=88 max_min_left_minus=88 max_min_left_plus=69 max_min_right=101 max_min_right_minus=27 max_min_right_plus=101 max_pos_hash_score=432 max_right=221 max_right_minus=221 max_right_plus=153 neg_log10_pos_hash_p_value=6.7 new_junction_coverage=0.07 new_junction_read_count=6 polymorphism_frequency=7.586e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.77 side_1_overlap=78 side_1_possible_overlap_registers=294 side_1_read_count=86 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.01 side_2_overlap=0 side_2_possible_overlap_registers=216 side_2_read_count=83 side_2_redundant=0 total_non_overlap_reads=6 JC 437 . NC_000913 4464478 -1 NC_000913 4464780 1 0 alignment_overlap=12 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=2.759e-02 junction_possible_overlap_registers=282 key=NC_000913__4464478__-1__NC_000913__4464768__1__12____300__300__0__0 max_left=245 max_left_minus=69 max_left_plus=245 max_min_left=69 max_min_left_minus=69 max_min_left_plus=69 max_min_right=42 max_min_right_minus=0 max_min_right_plus=42 max_pos_hash_score=564 max_right=212 max_right_minus=212 max_right_plus=212 neg_log10_pos_hash_p_value=9.9 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.759e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.00 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=111 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.98 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=105 side_2_redundant=0 total_non_overlap_reads=3 JC 438 . NC_000913 4606166 -1 NC_000913 4606403 1 0 alignment_overlap=89 coverage_minus=8 coverage_plus=9 flanking_left=300 flanking_right=300 frequency=2.092e-01 junction_possible_overlap_registers=205 key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0 max_left=200 max_left_minus=154 max_left_plus=200 max_min_left=104 max_min_left_minus=0 max_min_left_plus=104 max_min_right=97 max_min_right_minus=97 max_min_right_plus=83 max_pos_hash_score=410 max_right=193 max_right_minus=97 max_right_plus=193 neg_log10_pos_hash_p_value=3.2 new_junction_coverage=0.22 new_junction_read_count=17 polymorphism_frequency=2.092e-01 pos_hash_score=16 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.93 side_1_overlap=89 side_1_possible_overlap_registers=294 side_1_read_count=104 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.72 side_2_overlap=0 side_2_possible_overlap_registers=205 side_2_read_count=56 side_2_redundant=0 total_non_overlap_reads=17 UN 439 . 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