#=GENOME_DIFF	1.0
#=CREATED	14:08:40 22 Dec 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG_16samples-rerun/ME9050_S33_R1R2_RMDUP_BOTH-RM1andRM2-DUP.cutadapt -r /ld1/E.coli_BL21_DE3_ref/ncbi_dataset/data/GCF_000022665.1/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9050_S33_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9050_S33_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_BL21_DE3_ref/ncbi_dataset/data/GCF_000022665.1/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9050_S33_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9050_S33_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	477393698
#=CONVERTED-READS	1615063
#=INPUT-BASES	477515496
#=INPUT-READS	1615480
#=MAPPED-BASES	426343540
#=MAPPED-READS	1442568
SNP	1	129	NC_012971	226969	A
SNP	2	130	NC_012971	405802	T
SNP	3	131	NC_012971	519071	A
SNP	4	132	NC_012971	537641	A
SNP	5	138	NC_012971	550559	A
SNP	6	139	NC_012971	550561	A
SNP	7	140	NC_012971	550564	C
SNP	8	141	NC_012971	550663	A
SNP	9	142	NC_012971	550708	C
SNP	10	143	NC_012971	550712	T
SNP	11	144	NC_012971	550798	T
SNP	12	145	NC_012971	550888	A
SNP	13	146	NC_012971	550900	T
SNP	14	147	NC_012971	550927	A
SNP	15	148	NC_012971	550939	A
SNP	16	149	NC_012971	550945	A
SNP	17	152	NC_012971	550988	C
SNP	18	153	NC_012971	642526	T
DEL	19	401,432	NC_012971	748650	4449
SNP	20	160	NC_012971	753173	A
SNP	21	161	NC_012971	753248	C
SNP	22	162	NC_012971	753262	C
SNP	23	163	NC_012971	753271	T
SNP	24	164	NC_012971	753513	G
SNP	25	165	NC_012971	753674	C
SNP	26	166	NC_012971	753778	G
SNP	27	167	NC_012971	753860	G
SNP	28	168	NC_012971	754025	T
SNP	29	169	NC_012971	754080	T
SNP	30	170	NC_012971	754104	A
SNP	31	171	NC_012971	754122	G
SNP	32	172	NC_012971	754125	C
SNP	33	173	NC_012971	754158	G
SNP	34	174	NC_012971	754170	A
SNP	35	175	NC_012971	754247	A
SNP	36	176	NC_012971	754286	T
SNP	37	177	NC_012971	754371	T
SNP	38	178	NC_012971	754386	A
SNP	39	181	NC_012971	762867	G
SNP	40	182	NC_012971	762873	C
SNP	41	183	NC_012971	762885	G
SNP	42	184	NC_012971	762888	C
SNP	43	185	NC_012971	762894	T
SNP	44	186	NC_012971	762897	C
SNP	45	187	NC_012971	762903	A
DEL	46	188	NC_012971	762906	1
SUB	47	189,190	NC_012971	762911	1	TG
SNP	48	191	NC_012971	762918	C
SNP	49	192	NC_012971	762922	C
SNP	50	193	NC_012971	762945	A
SNP	51	194	NC_012971	763051	T
SNP	52	195	NC_012971	763103	G
SNP	53	196	NC_012971	763115	A
SNP	54	197	NC_012971	763117	A
SNP	55	198	NC_012971	763131	G
SNP	56	199	NC_012971	763139	T
SNP	57	200	NC_012971	763145	C
SNP	58	201	NC_012971	763166	T
SNP	59	202	NC_012971	763181	G
SUB	60	203,204	NC_012971	763190	2	AA
SNP	61	205	NC_012971	763193	C
SUB	62	206,207	NC_012971	763199	2	CG
SNP	63	208	NC_012971	763202	T
SNP	64	209	NC_012971	763205	T
SNP	65	217	NC_012971	767828	C
SNP	66	218	NC_012971	767830	A
SNP	67	219	NC_012971	767851	G
SNP	68	220	NC_012971	767863	C
SNP	69	221	NC_012971	767869	A
SNP	70	222	NC_012971	767872	A
SNP	71	223	NC_012971	767884	G
SNP	72	224	NC_012971	767889	C
SNP	73	225	NC_012971	767934	C
SNP	74	236	NC_012971	788122	G
SNP	75	239	NC_012971	791198	T
SNP	76	240	NC_012971	791250	T
SNP	77	242	NC_012971	855155	A
SNP	78	243	NC_012971	862724	C
SNP	79	245	NC_012971	931389	T
SNP	80	247	NC_012971	992215	T
SNP	81	248	NC_012971	1002731	A
SNP	82	249	NC_012971	1026045	G
SNP	83	250	NC_012971	1100143	A
SNP	84	253	NC_012971	1137851	C
SNP	85	254	NC_012971	1173770	A
SNP	86	256	NC_012971	1308529	A
SNP	87	258	NC_012971	1384274	G
SNP	88	303	NC_012971	1814885	T
SNP	89	304	NC_012971	1822910	C
SNP	90	305	NC_012971	1834871	A
SNP	91	308	NC_012971	1949161	G
SNP	92	310	NC_012971	1973596	C
SNP	93	311	NC_012971	2007879	T
DEL	94	407,435	NC_012971	2068532	776
SNP	95	321	NC_012971	2075017	C
INS	96	436	NC_012971	2135130	GACAT
SUB	97	324,325	NC_012971	2227497	2	AA
SUB	98	326,327	NC_012971	2275119	2	TG
SNP	99	329	NC_012971	2373775	T
SNP	100	330	NC_012971	2413824	A
SNP	101	331	NC_012971	2477975	C
DEL	102	408,439	NC_012971	2517851	1445
SNP	103	332	NC_012971	2567019	T
SNP	104	335	NC_012971	2764352	T
DEL	105	409,443	NC_012971	2820977	1446
SNP	106	337	NC_012971	2879376	A
SNP	107	338	NC_012971	2880243	T
SNP	108	339	NC_012971	2880800	C
SNP	109	342	NC_012971	2891803	A
SNP	110	343	NC_012971	2891814	C
DEL	111	411,445	NC_012971	2969387	670
SNP	112	345	NC_012971	3162393	T
SUB	113	346,347	NC_012971	3197975	2	GT
SNP	114	348	NC_012971	3443292	A
SNP	115	378	NC_012971	3496959	T
SNP	116	383	NC_012971	3733869	G
SNP	117	384	NC_012971	3757620	A
SNP	118	387	NC_012971	3817054	C
DEL	119	413,452	NC_012971	3822341	1441
SNP	120	389	NC_012971	3997577	G
SNP	121	391	NC_012971	4072111	C
SNP	122	392	NC_012971	4108278	T
DEL	123	393	NC_012971	4179097	1
SNP	124	394	NC_012971	4181483	T
DEL	125	454	NC_012971	4302992	3	repeat_length=3	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=GCC
SNP	126	396	NC_012971	4395355	T
RA	127	.	NC_012971	62261	0	C	A	bias_e_value=0.934018	bias_p_value=2.04876e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.4	fisher_strand_p_value=1.05801e-08	frequency=3.176e-01	ks_quality_p_value=1	major_base=C	major_cov=23/35	major_frequency=6.824e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.176e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=23/35	total_cov=50/35
RA	128	.	NC_012971	187510	0	C	A	bias_e_value=65.0306	bias_p_value=1.42644e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.5	fisher_strand_p_value=9.60166e-07	frequency=2.283e-01	ks_quality_p_value=1	major_base=C	major_cov=55/43	major_frequency=7.717e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.283e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=55/43	total_cov=84/43
RA	129	.	NC_012971	226969	0	G	A	consensus_score=125.2	frequency=1	major_base=A	major_cov=38/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/32
RA	130	.	NC_012971	405802	0	G	T	consensus_score=305.4	frequency=1	major_base=T	major_cov=38/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/54
RA	131	.	NC_012971	519071	0	G	A	consensus_score=184.3	frequency=1	major_base=A	major_cov=33/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/21
RA	132	.	NC_012971	537641	0	G	A	consensus_score=427.7	frequency=1	major_base=A	major_cov=49/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/71
RA	133	.	NC_012971	543888	0	G	T	consensus_score=56.8	deleted=1	frequency=1	major_base=T	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	134	.	NC_012971	550505	0	G	T	consensus_score=50.6	deleted=1	frequency=1	major_base=T	major_cov=12/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/5
RA	135	.	NC_012971	550507	0	T	.	consensus_score=75.3	deleted=1	frequency=1	major_base=.	major_cov=12/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/5
RA	136	.	NC_012971	550515	0	C	T	consensus_score=53.2	deleted=1	frequency=1	major_base=T	major_cov=12/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/5
RA	137	.	NC_012971	550524	0	G	A	consensus_score=41.2	deleted=1	frequency=1	major_base=A	major_cov=12/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/4
RA	138	.	NC_012971	550559	0	C	A	consensus_score=193.9	frequency=1	major_base=A	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	139	.	NC_012971	550561	0	G	A	consensus_score=192.3	frequency=1	major_base=A	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	140	.	NC_012971	550564	0	T	C	consensus_score=197.6	frequency=1	major_base=C	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	141	.	NC_012971	550663	0	G	A	bias_e_value=3571080	bias_p_value=0.78331	consensus_score=394.7	fisher_strand_p_value=0.418803	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=68/48	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=68/48	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=68/49
RA	142	.	NC_012971	550708	0	T	C	bias_e_value=3713220	bias_p_value=0.814489	consensus_score=502.4	fisher_strand_p_value=0.456522	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=75/62	major_frequency=9.928e-01	minor_base=G	minor_cov=0/1	new_cov=75/62	polymorphism_frequency=9.928e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=75/63
RA	143	.	NC_012971	550712	0	C	T	bias_e_value=2401060	bias_p_value=0.526668	consensus_score=472.9	fisher_strand_p_value=0.202984	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=75/60	major_frequency=9.854e-01	minor_base=G	minor_cov=0/2	new_cov=75/60	polymorphism_frequency=9.854e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=75/63
RA	144	.	NC_012971	550798	0	A	T	consensus_score=548.2	frequency=1	major_base=T	major_cov=89/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=89/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=89/69
RA	145	.	NC_012971	550888	0	G	A	consensus_score=511.8	frequency=1	major_base=A	major_cov=88/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=88/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=88/61
RA	146	.	NC_012971	550900	0	C	T	bias_e_value=3548040	bias_p_value=0.778258	consensus_score=490.2	fisher_strand_p_value=0.413043	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=81/56	major_frequency=9.928e-01	minor_base=G	minor_cov=0/1	new_cov=81/56	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=82/57
RA	147	.	NC_012971	550927	0	G	A	consensus_score=494.4	frequency=1	major_base=A	major_cov=83/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/59
RA	148	.	NC_012971	550939	0	C	A	consensus_score=493.4	frequency=1	major_base=A	major_cov=78/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/61
RA	149	.	NC_012971	550945	0	T	A	bias_e_value=3733080	bias_p_value=0.818846	consensus_score=455.6	fisher_strand_p_value=0.462121	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=71/60	major_frequency=9.924e-01	minor_base=G	minor_cov=0/1	new_cov=71/60	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/61
RA	150	.	NC_012971	550957	0	A	G	bias_e_value=4482470	bias_p_value=0.983223	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.1	fisher_strand_p_value=0.822506	frequency=2.083e-01	ks_quality_p_value=1	major_base=A	major_cov=53/42	major_frequency=7.917e-01	minor_base=G	minor_cov=13/12	new_cov=13/12	polymorphism_frequency=2.083e-01	polymorphism_score=58.5	prediction=polymorphism	ref_cov=53/42	total_cov=66/54
RA	151	.	NC_012971	550960	0	G	C	bias_e_value=4014930	bias_p_value=0.88067	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.6	fisher_strand_p_value=0.825167	frequency=2.000e-01	ks_quality_p_value=0.67032	major_base=G	major_cov=55/45	major_frequency=8.000e-01	minor_base=C	minor_cov=13/12	new_cov=13/12	polymorphism_frequency=2.000e-01	polymorphism_score=77.6	prediction=polymorphism	ref_cov=55/45	total_cov=69/58
RA	152	.	NC_012971	550988	0	A	C	bias_e_value=4476770	bias_p_value=0.981973	consensus_score=352.3	fisher_strand_p_value=0.818887	frequency=1	ks_quality_p_value=0.996754	major_base=C	major_cov=56/52	major_frequency=8.244e-01	minor_base=A	minor_cov=13/10	new_cov=56/52	polymorphism_frequency=8.244e-01	polymorphism_score=42.0	prediction=consensus	ref_cov=13/10	total_cov=70/62
RA	153	.	NC_012971	642526	0	A	T	consensus_score=263.3	frequency=1	major_base=T	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	154	.	NC_012971	670704	0	G	T	bias_e_value=0.000219187	bias_p_value=4.80783e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.4	fisher_strand_p_value=1.71135e-12	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=51/39	major_frequency=6.667e-01	minor_base=T	minor_cov=0/45	new_cov=0/45	polymorphism_frequency=3.333e-01	polymorphism_score=28.1	prediction=polymorphism	ref_cov=51/39	total_cov=53/85
RA	155	.	NC_012971	689994	0	C	G	bias_e_value=3908040	bias_p_value=0.857224	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.3	fisher_strand_p_value=0.526682	frequency=3.261e-01	ks_quality_p_value=0.979182	major_base=C	major_cov=12/19	major_frequency=6.739e-01	minor_base=G	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=3.261e-01	polymorphism_score=45.8	prediction=polymorphism	ref_cov=12/19	total_cov=20/26
RA	156	.	NC_012971	689997	0	C	T	bias_e_value=3908040	bias_p_value=0.857224	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.1	fisher_strand_p_value=0.526682	frequency=3.261e-01	ks_quality_p_value=0.979182	major_base=C	major_cov=12/19	major_frequency=6.739e-01	minor_base=T	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=3.261e-01	polymorphism_score=40.6	prediction=polymorphism	ref_cov=12/19	total_cov=20/26
RA	157	.	NC_012971	690002	0	A	G	bias_e_value=3637090	bias_p_value=0.79779	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.1	fisher_strand_p_value=0.526682	frequency=3.261e-01	ks_quality_p_value=0.827504	major_base=A	major_cov=12/19	major_frequency=6.739e-01	minor_base=G	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=3.261e-01	polymorphism_score=36.6	prediction=polymorphism	ref_cov=12/19	total_cov=20/26
RA	158	.	NC_012971	690056	0	C	A	bias_e_value=4558160	bias_p_value=0.999826	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.1	fisher_strand_p_value=1	frequency=2.632e-01	ks_quality_p_value=0.981379	major_base=C	major_cov=15/13	major_frequency=7.368e-01	minor_base=A	minor_cov=6/4	new_cov=6/4	polymorphism_frequency=2.632e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=15/13	total_cov=21/17
RA	159	.	NC_012971	740602	0	T	G	bias_e_value=0.1759	bias_p_value=3.85835e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.3	fisher_strand_p_value=1.82681e-09	frequency=2.263e-01	ks_quality_p_value=1	major_base=T	major_cov=59/47	major_frequency=7.737e-01	minor_base=G	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.263e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=59/47	total_cov=59/78
RA	160	.	NC_012971	753173	0	G	A	consensus_score=412.2	frequency=1	major_base=A	major_cov=74/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/48
RA	161	.	NC_012971	753248	0	T	C	consensus_score=520.0	frequency=1	major_base=C	major_cov=80/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=80/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/58
RA	162	.	NC_012971	753262	0	T	C	bias_e_value=2771760	bias_p_value=0.607981	consensus_score=468.1	fisher_strand_p_value=0.258328	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=72/57	major_frequency=9.773e-01	minor_base=A	minor_cov=3/0	new_cov=72/57	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/57
RA	163	.	NC_012971	753271	0	C	T	consensus_score=434.1	frequency=1	major_base=T	major_cov=65/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/56
RA	164	.	NC_012971	753513	0	T	G	bias_e_value=4558950	bias_p_value=1	consensus_score=393.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=33/73	major_frequency=9.907e-01	minor_base=T	minor_cov=0/1	new_cov=33/73	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/74
RA	165	.	NC_012971	753674	0	A	C	consensus_score=308.8	frequency=1	major_base=C	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	166	.	NC_012971	753778	0	A	G	consensus_score=331.6	frequency=1	major_base=G	major_cov=51/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/37
RA	167	.	NC_012971	753860	0	A	G	bias_e_value=4558950	bias_p_value=1	consensus_score=375.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=49/50	major_frequency=9.900e-01	minor_base=T	minor_cov=0/1	new_cov=49/50	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	168	.	NC_012971	754025	0	C	T	consensus_score=323.4	frequency=1	major_base=T	major_cov=47/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/48
RA	169	.	NC_012971	754080	0	C	T	consensus_score=332.0	frequency=1	major_base=T	major_cov=50/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/47
RA	170	.	NC_012971	754104	0	T	A	consensus_score=326.2	frequency=1	major_base=A	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	171	.	NC_012971	754122	0	C	G	consensus_score=374.6	frequency=1	major_base=G	major_cov=54/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/46
RA	172	.	NC_012971	754125	0	A	C	consensus_score=377.0	frequency=1	major_base=C	major_cov=54/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/46
RA	173	.	NC_012971	754158	0	A	G	consensus_score=314.4	frequency=1	major_base=G	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	174	.	NC_012971	754170	0	T	A	bias_e_value=4558950	bias_p_value=1	consensus_score=316.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/43	major_frequency=9.885e-01	minor_base=C	minor_cov=1/0	new_cov=43/43	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	175	.	NC_012971	754247	0	C	A	bias_e_value=4558950	bias_p_value=1	consensus_score=330.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=50/41	major_frequency=9.785e-01	minor_base=G	minor_cov=1/1	new_cov=50/41	polymorphism_frequency=9.785e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=51/42
RA	176	.	NC_012971	754286	0	C	T	bias_e_value=4558950	bias_p_value=1	consensus_score=277.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/37	major_frequency=9.753e-01	minor_base=C	minor_cov=1/1	new_cov=42/37	polymorphism_frequency=9.753e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=43/38
RA	177	.	NC_012971	754371	0	C	T	consensus_score=179.4	frequency=1	major_base=T	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	178	.	NC_012971	754386	0	T	A	bias_e_value=4558950	bias_p_value=1	consensus_score=171.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/20	major_frequency=9.796e-01	minor_base=C	minor_cov=1/0	new_cov=28/20	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/20
RA	179	.	NC_012971	754430	0	C	T	consensus_score=84.6	deleted=1	frequency=1	major_base=T	major_cov=20/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/7
RA	180	.	NC_012971	754454	0	T	G	consensus_score=86.7	deleted=1	frequency=1	major_base=G	major_cov=19/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/6
RA	181	.	NC_012971	762867	0	T	G	consensus_score=440.7	frequency=1	major_base=G	major_cov=60/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/56
RA	182	.	NC_012971	762873	0	T	C	bias_e_value=3846840	bias_p_value=0.8438	consensus_score=430.5	fisher_strand_p_value=0.496021	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=58/57	major_frequency=9.829e-01	minor_base=A	minor_cov=2/0	new_cov=58/57	polymorphism_frequency=9.829e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=60/57
RA	183	.	NC_012971	762885	0	C	G	consensus_score=403.1	frequency=1	major_base=G	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	184	.	NC_012971	762888	0	T	C	bias_e_value=3810550	bias_p_value=0.835839	consensus_score=377.0	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=47/51	major_frequency=9.899e-01	minor_base=T	minor_cov=1/0	new_cov=47/51	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/51
RA	185	.	NC_012971	762894	0	C	T	consensus_score=328.4	frequency=1	major_base=T	major_cov=45/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/47
RA	186	.	NC_012971	762897	0	A	C	bias_e_value=4558950	bias_p_value=1	consensus_score=324.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=44/45	major_frequency=9.889e-01	minor_base=T	minor_cov=1/0	new_cov=44/45	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=46/45
RA	187	.	NC_012971	762903	0	G	A	consensus_score=307.4	frequency=1	major_base=A	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	188	.	NC_012971	762905	0	T	.	bias_e_value=4558950	bias_p_value=1	consensus_score=344.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=38/39	major_frequency=8.750e-01	minor_base=T	minor_cov=5/6	new_cov=38/39	polymorphism_frequency=8.750e-01	polymorphism_score=47.4	prediction=consensus	ref_cov=5/6	total_cov=43/45
RA	189	.	NC_012971	762910	1	.	T	bias_e_value=3822990	bias_p_value=0.838567	consensus_score=317.4	fisher_strand_p_value=0.488636	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/45	major_frequency=9.886e-01	minor_base=.	minor_cov=1/0	new_cov=42/45	polymorphism_frequency=9.886e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=43/45
RA	190	.	NC_012971	762911	0	A	G	bias_e_value=3822990	bias_p_value=0.838567	consensus_score=329.9	fisher_strand_p_value=0.488636	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=42/45	major_frequency=9.886e-01	minor_base=T	minor_cov=1/0	new_cov=42/45	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	191	.	NC_012971	762918	0	T	C	bias_e_value=4558950	bias_p_value=1	consensus_score=395.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=52/52	major_frequency=9.905e-01	minor_base=T	minor_cov=1/0	new_cov=52/52	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/52
RA	192	.	NC_012971	762922	0	A	C	consensus_score=390.7	frequency=1	major_base=C	major_cov=53/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/52
RA	193	.	NC_012971	762945	0	C	A	consensus_score=393.6	frequency=1	major_base=A	major_cov=55/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/62
RA	194	.	NC_012971	763051	0	G	T	consensus_score=355.3	frequency=1	major_base=T	major_cov=55/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/62
RA	195	.	NC_012971	763103	0	T	G	consensus_score=275.5	frequency=1	major_base=G	major_cov=40/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/50
RA	196	.	NC_012971	763115	0	G	A	consensus_score=229.3	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	197	.	NC_012971	763117	0	C	A	consensus_score=232.5	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	198	.	NC_012971	763131	0	C	G	consensus_score=237.6	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	199	.	NC_012971	763139	0	C	T	consensus_score=206.3	frequency=1	major_base=T	major_cov=37/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/39
RA	200	.	NC_012971	763145	0	A	C	consensus_score=197.9	frequency=1	major_base=C	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	201	.	NC_012971	763166	0	C	T	consensus_score=177.1	frequency=1	major_base=T	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	202	.	NC_012971	763181	0	A	G	consensus_score=174.1	frequency=1	major_base=G	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	203	.	NC_012971	763190	0	T	A	consensus_score=116.1	frequency=1	major_base=A	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	204	.	NC_012971	763191	0	C	A	consensus_score=114.7	frequency=1	major_base=A	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	205	.	NC_012971	763193	0	T	C	consensus_score=120.0	frequency=1	major_base=C	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	206	.	NC_012971	763199	0	T	C	consensus_score=116.2	frequency=1	major_base=C	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	207	.	NC_012971	763200	0	A	G	consensus_score=120.0	frequency=1	major_base=G	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	208	.	NC_012971	763202	0	C	T	consensus_score=115.2	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	209	.	NC_012971	763205	0	A	T	consensus_score=112.6	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	210	.	NC_012971	763238	0	T	C	consensus_score=55.2	deleted=1	frequency=1	major_base=C	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	211	.	NC_012971	763247	0	G	A	consensus_score=48.9	deleted=1	frequency=1	major_base=A	major_cov=16/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/10
RA	212	.	NC_012971	763266	0	A	G	consensus_score=40.9	deleted=1	frequency=1	major_base=G	major_cov=14/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/8
RA	213	.	NC_012971	763277	0	C	T	bias_e_value=4558950	bias_p_value=1	consensus_score=27.0	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/6	major_frequency=9.444e-01	minor_base=C	minor_cov=1/0	new_cov=11/6	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=12/6
RA	214	.	NC_012971	767788	0	T	G	consensus_score=94.6	deleted=1	frequency=1	major_base=G	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	215	.	NC_012971	767792	0	A	G	consensus_score=87.1	deleted=1	frequency=1	major_base=G	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	216	.	NC_012971	767800	0	T	G	consensus_score=98.4	deleted=1	frequency=1	major_base=G	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	217	.	NC_012971	767828	0	A	C	consensus_score=138.1	frequency=1	major_base=C	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	218	.	NC_012971	767830	0	G	A	consensus_score=127.0	frequency=1	major_base=A	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	219	.	NC_012971	767851	0	A	G	bias_e_value=4558950	bias_p_value=1	consensus_score=166.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=23/23	major_frequency=9.787e-01	minor_base=T	minor_cov=0/1	new_cov=23/23	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	220	.	NC_012971	767863	0	A	C	consensus_score=199.2	frequency=1	major_base=C	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	221	.	NC_012971	767869	0	G	A	consensus_score=185.1	frequency=1	major_base=A	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	222	.	NC_012971	767872	0	G	A	consensus_score=180.2	frequency=1	major_base=A	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	223	.	NC_012971	767884	0	T	G	consensus_score=205.4	frequency=1	major_base=G	major_cov=27/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/32
RA	224	.	NC_012971	767889	0	T	C	consensus_score=224.8	frequency=1	major_base=C	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	225	.	NC_012971	767934	0	T	C	consensus_score=321.3	frequency=1	major_base=C	major_cov=40/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/46
RA	226	.	NC_012971	788012	0	C	T	consensus_score=29.4	deleted=1	frequency=1	major_base=T	major_cov=10/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/1
RA	227	.	NC_012971	788021	0	T	C	consensus_score=44.1	deleted=1	frequency=1	major_base=C	major_cov=11/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/2
RA	228	.	NC_012971	788030	0	A	T	bias_e_value=4558950	bias_p_value=1	consensus_score=42.3	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/3	major_frequency=9.333e-01	minor_base=G	minor_cov=1/0	new_cov=11/3	polymorphism_frequency=9.333e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=12/3
RA	229	.	NC_012971	788039	0	T	G	consensus_score=53.8	deleted=1	frequency=1	major_base=G	major_cov=12/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/4
RA	230	.	NC_012971	788042	0	G	T	bias_e_value=4558950	bias_p_value=1	consensus_score=46.4	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/4	major_frequency=9.375e-01	minor_base=G	minor_cov=1/0	new_cov=11/4	polymorphism_frequency=9.375e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=1/0	total_cov=12/4
RA	231	.	NC_012971	788097	0	A	T	consensus_score=109.3	deleted=1	frequency=1	major_base=T	major_cov=22/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/10
RA	232	.	NC_012971	788098	0	A	T	consensus_score=107.9	deleted=1	frequency=1	major_base=T	major_cov=22/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/10
RA	233	.	NC_012971	788100	0	C	A	consensus_score=108.0	deleted=1	frequency=1	major_base=A	major_cov=22/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/10
RA	234	.	NC_012971	788103	0	T	C	consensus_score=114.2	deleted=1	frequency=1	major_base=C	major_cov=22/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/10
RA	235	.	NC_012971	788118	0	G	A	bias_e_value=4558940	bias_p_value=0.999998	consensus_score=104.7	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997986	major_base=A	major_cov=21/10	major_frequency=9.688e-01	minor_base=G	minor_cov=1/0	new_cov=21/10	polymorphism_frequency=9.688e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=22/10
RA	236	.	NC_012971	788122	0	A	G	bias_e_value=3976970	bias_p_value=0.872343	consensus_score=115.0	fisher_strand_p_value=0.539356	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=22/11	major_frequency=9.167e-01	minor_base=A	minor_cov=1/2	new_cov=22/11	polymorphism_frequency=9.167e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/2	total_cov=23/13
RA	237	.	NC_012971	791152	0	A	G	consensus_score=46.1	deleted=1	frequency=1	major_base=G	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	238	.	NC_012971	791160	1	.	A	consensus_score=46.3	deleted=1	frequency=1	major_base=A	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	239	.	NC_012971	791198	0	C	T	consensus_score=158.4	frequency=1	major_base=T	major_cov=24/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	240	.	NC_012971	791250	0	A	T	bias_e_value=3834910	bias_p_value=0.841182	consensus_score=228.7	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/31	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=33/31	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	241	.	NC_012971	831947	0	G	A	bias_e_value=0.00184106	bias_p_value=4.03833e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.5	fisher_strand_p_value=1.56019e-11	frequency=3.162e-01	ks_quality_p_value=1	major_base=G	major_cov=55/38	major_frequency=6.838e-01	minor_base=A	minor_cov=1/42	new_cov=1/42	polymorphism_frequency=3.162e-01	polymorphism_score=45.8	prediction=polymorphism	ref_cov=55/38	total_cov=56/80
RA	242	.	NC_012971	855155	0	G	A	consensus_score=234.7	frequency=1	major_base=A	major_cov=41/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/30
RA	243	.	NC_012971	862724	0	T	C	bias_e_value=3804920	bias_p_value=0.834604	consensus_score=331.8	fisher_strand_p_value=0.483146	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=42/46	major_frequency=9.888e-01	minor_base=A	minor_cov=1/0	new_cov=42/46	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	244	.	NC_012971	875191	0	G	T	bias_e_value=2942120	bias_p_value=0.645351	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.2	fisher_strand_p_value=0.288276	frequency=6.250e-01	ks_quality_p_value=0.995842	major_base=T	major_cov=6/14	major_frequency=6.250e-01	minor_base=G	minor_cov=6/6	new_cov=6/14	polymorphism_frequency=6.250e-01	polymorphism_score=31.3	prediction=polymorphism	ref_cov=6/6	total_cov=12/20
RA	245	.	NC_012971	931389	0	G	T	bias_e_value=3440910	bias_p_value=0.754759	consensus_score=380.6	fisher_strand_p_value=0.387387	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/68	major_frequency=9.910e-01	minor_base=C	minor_cov=1/0	new_cov=42/68	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/68
RA	246	.	NC_012971	969482	0	G	T	bias_e_value=0.14088	bias_p_value=3.09019e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.9	fisher_strand_p_value=1.44715e-09	frequency=2.708e-01	ks_quality_p_value=1	major_base=G	major_cov=51/54	major_frequency=7.292e-01	minor_base=T	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=2.708e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=51/54	total_cov=51/93
RA	247	.	NC_012971	992215	0	C	T	consensus_score=401.2	frequency=1	major_base=T	major_cov=75/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/40
RA	248	.	NC_012971	1002731	0	G	A	bias_e_value=4558950	bias_p_value=1	consensus_score=616.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=81/87	major_frequency=9.941e-01	minor_base=C	minor_cov=0/1	new_cov=81/87	polymorphism_frequency=9.941e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/88
RA	249	.	NC_012971	1026045	0	A	G	consensus_score=611.0	frequency=1	major_base=G	major_cov=104/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=104/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=104/58
RA	250	.	NC_012971	1100143	0	G	A	bias_e_value=4558950	bias_p_value=1	consensus_score=183.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/15	major_frequency=9.672e-01	minor_base=G	minor_cov=2/0	new_cov=44/15	polymorphism_frequency=9.672e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=46/15
RA	251	.	NC_012971	1112199	0	G	A	bias_e_value=2.66538e-05	bias_p_value=5.84647e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=260.0	fisher_strand_p_value=1.93109e-13	frequency=2.391e-01	ks_quality_p_value=1	major_base=G	major_cov=71/34	major_frequency=7.609e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.391e-01	polymorphism_score=35.1	prediction=polymorphism	ref_cov=71/34	total_cov=71/68
RA	252	.	NC_012971	1127969	0	G	T	bias_e_value=0.0370208	bias_p_value=8.12046e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=268.9	fisher_strand_p_value=3.56887e-10	frequency=2.319e-01	ks_quality_p_value=1	major_base=G	major_cov=60/46	major_frequency=7.681e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.319e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=60/46	total_cov=60/78
RA	253	.	NC_012971	1137851	0	A	C	consensus_score=290.8	frequency=1	major_base=C	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	254	.	NC_012971	1173770	0	G	A	consensus_score=266.3	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	255	.	NC_012971	1260567	0	C	A	bias_e_value=50.2706	bias_p_value=1.10268e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.0	fisher_strand_p_value=7.28707e-07	frequency=2.529e-01	ks_quality_p_value=1	major_base=C	major_cov=29/36	major_frequency=7.471e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.529e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=29/36	total_cov=51/36
RA	256	.	NC_012971	1308529	0	G	A	bias_e_value=3858410	bias_p_value=0.846337	consensus_score=431.3	fisher_strand_p_value=0.499658	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=70/61	major_frequency=9.850e-01	minor_base=C	minor_cov=2/0	new_cov=70/61	polymorphism_frequency=9.850e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/61
RA	257	.	NC_012971	1321336	0	A	C	bias_e_value=1.31722	bias_p_value=2.88931e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.4	fisher_strand_p_value=1.52056e-08	frequency=2.028e-01	ks_quality_p_value=1	major_base=A	major_cov=54/60	major_frequency=7.972e-01	minor_base=C	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.028e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=54/60	total_cov=83/60
RA	258	.	NC_012971	1384274	0	A	G	consensus_score=322.5	frequency=1	major_base=G	major_cov=45/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/41
RA	259	.	NC_012971	1403229	0	A	G	bias_e_value=4238530	bias_p_value=0.929715	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.8	fisher_strand_p_value=0.81131	frequency=2.000e-01	ks_quality_p_value=0.800333	major_base=A	major_cov=47/41	major_frequency=8.000e-01	minor_base=G	minor_cov=13/9	new_cov=13/9	polymorphism_frequency=2.000e-01	polymorphism_score=57.6	prediction=polymorphism	ref_cov=47/41	total_cov=60/50
RA	260	.	NC_012971	1403241	0	G	A	bias_e_value=4496620	bias_p_value=0.986328	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.7	fisher_strand_p_value=0.839261	frequency=2.705e-01	ks_quality_p_value=1	major_base=G	major_cov=53/36	major_frequency=7.295e-01	minor_base=A	minor_cov=19/14	new_cov=19/14	polymorphism_frequency=2.705e-01	polymorphism_score=90.0	prediction=polymorphism	ref_cov=53/36	total_cov=72/50
RA	261	.	NC_012971	1403242	0	C	T	bias_e_value=4494040	bias_p_value=0.98576	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.8	fisher_strand_p_value=0.836214	frequency=2.619e-01	ks_quality_p_value=0.999814	major_base=C	major_cov=57/36	major_frequency=7.381e-01	minor_base=T	minor_cov=19/14	new_cov=19/14	polymorphism_frequency=2.619e-01	polymorphism_score=90.3	prediction=polymorphism	ref_cov=57/36	total_cov=76/50
RA	262	.	NC_012971	1403256	0	G	A	bias_e_value=4047840	bias_p_value=0.887887	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.0	fisher_strand_p_value=0.565547	frequency=3.259e-01	ks_quality_p_value=1	major_base=G	major_cov=61/30	major_frequency=6.741e-01	minor_base=A	minor_cov=27/17	new_cov=27/17	polymorphism_frequency=3.259e-01	polymorphism_score=130.1	prediction=polymorphism	ref_cov=61/30	total_cov=88/47
RA	263	.	NC_012971	1403263	0	C	A	bias_e_value=4051170	bias_p_value=0.888618	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.3	fisher_strand_p_value=0.704502	frequency=3.431e-01	ks_quality_p_value=0.804585	major_base=C	major_cov=61/29	major_frequency=6.569e-01	minor_base=A	minor_cov=30/17	new_cov=30/17	polymorphism_frequency=3.431e-01	polymorphism_score=111.1	prediction=polymorphism	ref_cov=61/29	total_cov=91/46
RA	264	.	NC_012971	1403266	0	T	C	bias_e_value=3858880	bias_p_value=0.846439	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.3	fisher_strand_p_value=0.566489	frequency=3.381e-01	ks_quality_p_value=0.882288	major_base=T	major_cov=64/28	major_frequency=6.619e-01	minor_base=C	minor_cov=30/17	new_cov=30/17	polymorphism_frequency=3.381e-01	polymorphism_score=139.1	prediction=polymorphism	ref_cov=64/28	total_cov=94/46
RA	265	.	NC_012971	1403307	0	T	C	bias_e_value=4350430	bias_p_value=0.95426	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.8	fisher_strand_p_value=0.71321	frequency=3.451e-01	ks_quality_p_value=1	major_base=T	major_cov=61/32	major_frequency=6.549e-01	minor_base=C	minor_cov=30/19	new_cov=30/19	polymorphism_frequency=3.451e-01	polymorphism_score=139.9	prediction=polymorphism	ref_cov=61/32	total_cov=91/51
RA	266	.	NC_012971	1403309	0	A	G	bias_e_value=3776300	bias_p_value=0.828325	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.9	fisher_strand_p_value=0.71321	frequency=3.451e-01	ks_quality_p_value=0.665469	major_base=A	major_cov=61/32	major_frequency=6.549e-01	minor_base=G	minor_cov=30/19	new_cov=30/19	polymorphism_frequency=3.451e-01	polymorphism_score=141.7	prediction=polymorphism	ref_cov=61/32	total_cov=91/51
RA	267	.	NC_012971	1403322	0	A	G	bias_e_value=4503480	bias_p_value=0.987831	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.9	fisher_strand_p_value=1	frequency=3.548e-01	ks_quality_p_value=0.848105	major_base=A	major_cov=64/36	major_frequency=6.452e-01	minor_base=G	minor_cov=35/20	new_cov=35/20	polymorphism_frequency=3.548e-01	polymorphism_score=150.3	prediction=polymorphism	ref_cov=64/36	total_cov=99/56
RA	268	.	NC_012971	1403323	0	C	A	bias_e_value=4546290	bias_p_value=0.997223	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.1	fisher_strand_p_value=1	frequency=3.526e-01	ks_quality_p_value=0.926401	major_base=C	major_cov=64/37	major_frequency=6.474e-01	minor_base=A	minor_cov=35/20	new_cov=35/20	polymorphism_frequency=3.526e-01	polymorphism_score=130.8	prediction=polymorphism	ref_cov=64/37	total_cov=99/57
RA	269	.	NC_012971	1403325	0	G	A	bias_e_value=4418740	bias_p_value=0.969244	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.5	fisher_strand_p_value=1	frequency=3.548e-01	ks_quality_p_value=0.762462	major_base=G	major_cov=64/36	major_frequency=6.452e-01	minor_base=A	minor_cov=35/20	new_cov=35/20	polymorphism_frequency=3.548e-01	polymorphism_score=154.8	prediction=polymorphism	ref_cov=64/36	total_cov=99/57
RA	270	.	NC_012971	1403336	0	T	C	bias_e_value=4475050	bias_p_value=0.981596	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.2	fisher_strand_p_value=1	frequency=3.554e-01	ks_quality_p_value=0.814386	major_base=T	major_cov=68/39	major_frequency=6.446e-01	minor_base=C	minor_cov=37/22	new_cov=37/22	polymorphism_frequency=3.554e-01	polymorphism_score=179.2	prediction=polymorphism	ref_cov=68/39	total_cov=105/62
RA	271	.	NC_012971	1403348	0	A	G	bias_e_value=4558630	bias_p_value=0.999929	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.3	fisher_strand_p_value=1	frequency=3.697e-01	ks_quality_p_value=0.988146	major_base=A	major_cov=65/39	major_frequency=6.303e-01	minor_base=G	minor_cov=38/23	new_cov=38/23	polymorphism_frequency=3.697e-01	polymorphism_score=175.9	prediction=polymorphism	ref_cov=65/39	total_cov=103/62
RA	272	.	NC_012971	1403360	0	A	G	bias_e_value=1803660	bias_p_value=0.39563	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.6	fisher_strand_p_value=0.867348	frequency=3.851e-01	ks_quality_p_value=0.150109	major_base=A	major_cov=62/37	major_frequency=6.149e-01	minor_base=G	minor_cov=40/22	new_cov=40/22	polymorphism_frequency=3.851e-01	polymorphism_score=186.2	prediction=polymorphism	ref_cov=62/37	total_cov=103/61
RA	273	.	NC_012971	1403371	0	G	A	bias_e_value=3704960	bias_p_value=0.812679	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.9	fisher_strand_p_value=0.516326	frequency=4.132e-01	ks_quality_p_value=0.879715	major_base=G	major_cov=60/38	major_frequency=5.868e-01	minor_base=A	minor_cov=46/23	new_cov=46/23	polymorphism_frequency=4.132e-01	polymorphism_score=219.2	prediction=polymorphism	ref_cov=60/38	total_cov=106/61
RA	274	.	NC_012971	1403372	0	A	G	bias_e_value=3522180	bias_p_value=0.772585	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.8	fisher_strand_p_value=0.626535	frequency=4.192e-01	ks_quality_p_value=0.649099	major_base=A	major_cov=59/38	major_frequency=5.808e-01	minor_base=G	minor_cov=46/24	new_cov=46/24	polymorphism_frequency=4.192e-01	polymorphism_score=213.4	prediction=polymorphism	ref_cov=59/38	total_cov=105/62
RA	275	.	NC_012971	1403377	0	C	T	bias_e_value=3526010	bias_p_value=0.773426	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.9	fisher_strand_p_value=0.747649	frequency=4.142e-01	ks_quality_p_value=0.545201	major_base=C	major_cov=60/39	major_frequency=5.858e-01	minor_base=T	minor_cov=45/25	new_cov=45/25	polymorphism_frequency=4.142e-01	polymorphism_score=220.8	prediction=polymorphism	ref_cov=60/39	total_cov=105/66
RA	276	.	NC_012971	1403405	0	T	G	bias_e_value=3960520	bias_p_value=0.868734	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.7	fisher_strand_p_value=0.534506	frequency=4.386e-01	ks_quality_p_value=0.998233	major_base=T	major_cov=54/42	major_frequency=5.614e-01	minor_base=G	minor_cov=46/29	new_cov=46/29	polymorphism_frequency=4.386e-01	polymorphism_score=245.3	prediction=polymorphism	ref_cov=54/42	total_cov=100/71
RA	277	.	NC_012971	1403410	0	G	C	bias_e_value=3291660	bias_p_value=0.722022	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.0	fisher_strand_p_value=0.354393	frequency=4.540e-01	ks_quality_p_value=1	major_base=G	major_cov=53/42	major_frequency=5.460e-01	minor_base=C	minor_cov=50/29	new_cov=50/29	polymorphism_frequency=4.540e-01	polymorphism_score=270.7	prediction=polymorphism	ref_cov=53/42	total_cov=104/71
RA	278	.	NC_012971	1403415	0	G	A	bias_e_value=2467.72	bias_p_value=0.000541291	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.9	fisher_strand_p_value=0.634786	frequency=4.731e-01	ks_quality_p_value=7.81493e-05	major_base=G	major_cov=52/36	major_frequency=5.269e-01	minor_base=A	minor_cov=50/29	new_cov=50/29	polymorphism_frequency=4.731e-01	polymorphism_score=263.3	prediction=polymorphism	ref_cov=52/36	total_cov=102/67
RA	279	.	NC_012971	1403423	0	A	G	bias_e_value=1439610	bias_p_value=0.315776	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.4	fisher_strand_p_value=0.214916	frequency=4.509e-01	ks_quality_p_value=0.43643	major_base=A	major_cov=51/44	major_frequency=5.491e-01	minor_base=G	minor_cov=50/28	new_cov=50/28	polymorphism_frequency=4.509e-01	polymorphism_score=245.2	prediction=polymorphism	ref_cov=51/44	total_cov=101/72
RA	280	.	NC_012971	1403446	0	A	T	bias_e_value=650299	bias_p_value=0.142642	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.4	fisher_strand_p_value=0.0574692	frequency=4.417e-01	ks_quality_p_value=0.559337	major_base=A	major_cov=44/47	major_frequency=5.583e-01	minor_base=T	minor_cov=46/26	new_cov=46/26	polymorphism_frequency=4.417e-01	polymorphism_score=287.2	prediction=polymorphism	ref_cov=44/47	total_cov=92/74
RA	281	.	NC_012971	1403448	0	A	G	bias_e_value=877140	bias_p_value=0.192399	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.8	fisher_strand_p_value=0.0574692	frequency=4.417e-01	ks_quality_p_value=0.827476	major_base=A	major_cov=44/47	major_frequency=5.583e-01	minor_base=G	minor_cov=46/26	new_cov=46/26	polymorphism_frequency=4.417e-01	polymorphism_score=222.1	prediction=polymorphism	ref_cov=44/47	total_cov=92/74
RA	282	.	NC_012971	1403455	0	C	T	bias_e_value=919699	bias_p_value=0.201735	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.8	fisher_strand_p_value=0.0537686	frequency=4.161e-01	ks_quality_p_value=0.942031	major_base=C	major_cov=45/49	major_frequency=5.839e-01	minor_base=T	minor_cov=43/24	new_cov=43/24	polymorphism_frequency=4.161e-01	polymorphism_score=212.3	prediction=polymorphism	ref_cov=45/49	total_cov=88/73
RA	283	.	NC_012971	1403456	0	A	G	bias_e_value=693059	bias_p_value=0.152022	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.4	fisher_strand_p_value=0.0537686	frequency=4.161e-01	ks_quality_p_value=0.649203	major_base=A	major_cov=45/49	major_frequency=5.839e-01	minor_base=G	minor_cov=43/24	new_cov=43/24	polymorphism_frequency=4.161e-01	polymorphism_score=205.4	prediction=polymorphism	ref_cov=45/49	total_cov=88/73
RA	284	.	NC_012971	1403459	0	T	G	bias_e_value=439964	bias_p_value=0.0965055	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.4	fisher_strand_p_value=0.0353157	frequency=4.151e-01	ks_quality_p_value=0.553798	major_base=T	major_cov=44/49	major_frequency=5.849e-01	minor_base=G	minor_cov=43/23	new_cov=43/23	polymorphism_frequency=4.151e-01	polymorphism_score=213.8	prediction=polymorphism	ref_cov=44/49	total_cov=88/73
RA	285	.	NC_012971	1403461	0	G	C	bias_e_value=1222620	bias_p_value=0.268179	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.7	fisher_strand_p_value=0.0745793	frequency=3.938e-01	ks_quality_p_value=1	major_base=G	major_cov=47/50	major_frequency=6.062e-01	minor_base=C	minor_cov=40/23	new_cov=40/23	polymorphism_frequency=3.938e-01	polymorphism_score=206.2	prediction=polymorphism	ref_cov=47/50	total_cov=90/74
RA	286	.	NC_012971	1403462	0	C	A	bias_e_value=432970	bias_p_value=0.0949713	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.9	fisher_strand_p_value=0.0269693	frequency=4.000e-01	ks_quality_p_value=0.710764	major_base=C	major_cov=47/52	major_frequency=6.000e-01	minor_base=A	minor_cov=43/23	new_cov=43/23	polymorphism_frequency=4.000e-01	polymorphism_score=162.2	prediction=polymorphism	ref_cov=47/52	total_cov=90/75
RA	287	.	NC_012971	1403479	0	T	A	bias_e_value=316472	bias_p_value=0.0694178	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.0	fisher_strand_p_value=0.0158441	frequency=3.795e-01	ks_quality_p_value=0.81993	major_base=T	major_cov=48/55	major_frequency=6.205e-01	minor_base=A	minor_cov=42/21	new_cov=42/21	polymorphism_frequency=3.795e-01	polymorphism_score=244.2	prediction=polymorphism	ref_cov=48/55	total_cov=91/76
RA	288	.	NC_012971	1403482	0	C	T	bias_e_value=196163	bias_p_value=0.0430282	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.8	fisher_strand_p_value=0.0101841	frequency=3.988e-01	ks_quality_p_value=0.713076	major_base=C	major_cov=44/54	major_frequency=6.012e-01	minor_base=T	minor_cov=43/22	new_cov=43/22	polymorphism_frequency=3.988e-01	polymorphism_score=202.8	prediction=polymorphism	ref_cov=44/54	total_cov=91/76
RA	289	.	NC_012971	1403548	0	A	C	bias_e_value=72281.7	bias_p_value=0.0158549	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.8	fisher_strand_p_value=0.00224245	frequency=2.500e-01	ks_quality_p_value=0.99511	major_base=A	major_cov=34/68	major_frequency=7.500e-01	minor_base=C	minor_cov=22/12	new_cov=22/12	polymorphism_frequency=2.500e-01	polymorphism_score=94.3	prediction=polymorphism	ref_cov=34/68	total_cov=56/80
RA	290	.	NC_012971	1403575	0	A	G	bias_e_value=80489.5	bias_p_value=0.0176553	consensus_reject=FREQUENCY_CUTOFF	consensus_score=296.8	fisher_strand_p_value=0.00350472	frequency=2.174e-01	ks_quality_p_value=0.721742	major_base=A	major_cov=39/69	major_frequency=7.826e-01	minor_base=G	minor_cov=20/10	new_cov=20/10	polymorphism_frequency=2.174e-01	polymorphism_score=82.5	prediction=polymorphism	ref_cov=39/69	total_cov=59/79
RA	291	.	NC_012971	1404263	0	T	C	bias_e_value=1717370	bias_p_value=0.376702	consensus_reject=FREQUENCY_CUTOFF	consensus_score=295.8	fisher_strand_p_value=0.123052	frequency=2.047e-01	ks_quality_p_value=0.983915	major_base=T	major_cov=47/54	major_frequency=7.953e-01	minor_base=C	minor_cov=17/9	new_cov=17/9	polymorphism_frequency=2.047e-01	polymorphism_score=63.7	prediction=polymorphism	ref_cov=47/54	total_cov=64/63
RA	292	.	NC_012971	1404269	0	A	G	bias_e_value=850481	bias_p_value=0.186552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.4	fisher_strand_p_value=0.0479194	frequency=2.131e-01	ks_quality_p_value=0.952585	major_base=A	major_cov=41/55	major_frequency=7.869e-01	minor_base=G	minor_cov=17/9	new_cov=17/9	polymorphism_frequency=2.131e-01	polymorphism_score=68.7	prediction=polymorphism	ref_cov=41/55	total_cov=58/64
RA	293	.	NC_012971	1404272	0	T	G	bias_e_value=1290910	bias_p_value=0.283158	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.8	fisher_strand_p_value=0.0827772	frequency=2.213e-01	ks_quality_p_value=0.971718	major_base=T	major_cov=41/54	major_frequency=7.787e-01	minor_base=G	minor_cov=17/10	new_cov=17/10	polymorphism_frequency=2.213e-01	polymorphism_score=76.3	prediction=polymorphism	ref_cov=41/54	total_cov=58/64
RA	294	.	NC_012971	1404305	0	T	A	bias_e_value=761077	bias_p_value=0.166941	consensus_reject=FREQUENCY_CUTOFF	consensus_score=335.6	fisher_strand_p_value=0.0782446	frequency=2.047e-01	ks_quality_p_value=0.504031	major_base=T	major_cov=45/56	major_frequency=7.953e-01	minor_base=A	minor_cov=17/9	new_cov=17/9	polymorphism_frequency=2.047e-01	polymorphism_score=92.5	prediction=polymorphism	ref_cov=45/56	total_cov=63/65
RA	295	.	NC_012971	1404311	0	A	T	bias_e_value=1388640	bias_p_value=0.304595	consensus_reject=FREQUENCY_CUTOFF	consensus_score=332.7	fisher_strand_p_value=0.123052	frequency=2.031e-01	ks_quality_p_value=0.724256	major_base=A	major_cov=47/55	major_frequency=7.969e-01	minor_base=T	minor_cov=17/9	new_cov=17/9	polymorphism_frequency=2.031e-01	polymorphism_score=91.3	prediction=polymorphism	ref_cov=47/55	total_cov=64/64
RA	296	.	NC_012971	1404323	0	A	G	bias_e_value=1260510	bias_p_value=0.27649	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.4	fisher_strand_p_value=0.0812117	frequency=2.080e-01	ks_quality_p_value=0.958082	major_base=A	major_cov=45/54	major_frequency=7.920e-01	minor_base=G	minor_cov=17/9	new_cov=17/9	polymorphism_frequency=2.080e-01	polymorphism_score=68.3	prediction=polymorphism	ref_cov=45/54	total_cov=64/63
RA	297	.	NC_012971	1404335	0	G	C	bias_e_value=1749410	bias_p_value=0.383731	consensus_reject=FREQUENCY_CUTOFF	consensus_score=318.9	fisher_strand_p_value=0.128965	frequency=2.031e-01	ks_quality_p_value=0.964789	major_base=G	major_cov=49/53	major_frequency=7.969e-01	minor_base=C	minor_cov=17/9	new_cov=17/9	polymorphism_frequency=2.031e-01	polymorphism_score=77.2	prediction=polymorphism	ref_cov=49/53	total_cov=66/64
RA	298	.	NC_012971	1404350	0	T	C	bias_e_value=995694	bias_p_value=0.218404	consensus_reject=FREQUENCY_CUTOFF	consensus_score=285.3	fisher_strand_p_value=0.0782446	frequency=2.047e-01	ks_quality_p_value=0.720097	major_base=T	major_cov=45/56	major_frequency=7.953e-01	minor_base=C	minor_cov=17/9	new_cov=17/9	polymorphism_frequency=2.047e-01	polymorphism_score=69.6	prediction=polymorphism	ref_cov=45/56	total_cov=62/65
RA	299	.	NC_012971	1456835	0	G	A	bias_e_value=0.0722694	bias_p_value=1.58522e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.3	fisher_strand_p_value=7.18808e-10	frequency=2.212e-01	ks_quality_p_value=1	major_base=G	major_cov=57/31	major_frequency=7.788e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.212e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=57/31	total_cov=57/57
RA	300	.	NC_012971	1581200	0	G	T	bias_e_value=0.000725293	bias_p_value=1.59092e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.2	fisher_strand_p_value=5.9248e-12	frequency=3.182e-01	ks_quality_p_value=1	major_base=G	major_cov=48/27	major_frequency=6.818e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=3.182e-01	polymorphism_score=27.2	prediction=polymorphism	ref_cov=48/27	total_cov=48/62
RA	301	.	NC_012971	1756922	0	G	T	bias_e_value=4.92832e-08	bias_p_value=1.08102e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=302.3	fisher_strand_p_value=2.94053e-16	frequency=2.617e-01	ks_quality_p_value=1	major_base=G	major_cov=77/33	major_frequency=7.383e-01	minor_base=T	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=2.617e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=77/33	total_cov=77/72
RA	302	.	NC_012971	1765176	0	G	T	bias_e_value=0.411464	bias_p_value=9.02541e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.0	fisher_strand_p_value=4.46191e-09	frequency=3.148e-01	ks_quality_p_value=1	major_base=G	major_cov=39/35	major_frequency=6.852e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.148e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=39/35	total_cov=39/69
RA	303	.	NC_012971	1814885	0	C	T	consensus_score=458.4	frequency=1	major_base=T	major_cov=72/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/61
RA	304	.	NC_012971	1822910	0	A	C	bias_e_value=3893280	bias_p_value=0.853986	consensus_score=330.9	fisher_strand_p_value=0.510862	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=39/54	major_frequency=9.789e-01	minor_base=A	minor_cov=0/2	new_cov=39/54	polymorphism_frequency=9.789e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=39/56
RA	305	.	NC_012971	1834871	0	G	A	bias_e_value=4558950	bias_p_value=1	consensus_score=280.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=37/43	major_frequency=9.877e-01	minor_base=C	minor_cov=0/1	new_cov=37/43	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=37/45
RA	306	.	NC_012971	1859990	0	A	C	bias_e_value=0.0159673	bias_p_value=3.5024e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.0	fisher_strand_p_value=1.48203e-10	frequency=3.600e-01	ks_quality_p_value=1	major_base=A	major_cov=26/38	major_frequency=6.400e-01	minor_base=C	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.600e-01	polymorphism_score=25.4	prediction=polymorphism	ref_cov=26/38	total_cov=62/38
RA	307	.	NC_012971	1868540	0	C	A	bias_e_value=61584.4	bias_p_value=0.0135085	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.6	fisher_strand_p_value=0.00185273	frequency=2.843e-01	ks_quality_p_value=1	major_base=C	major_cov=27/46	major_frequency=7.157e-01	minor_base=A	minor_cov=21/8	new_cov=21/8	polymorphism_frequency=2.843e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=27/46	total_cov=48/54
RA	308	.	NC_012971	1949161	0	T	G	bias_e_value=3804580	bias_p_value=0.83453	consensus_score=339.7	fisher_strand_p_value=0.483516	frequency=1	ks_quality_p_value=0.999024	major_base=G	major_cov=47/43	major_frequency=9.890e-01	minor_base=T	minor_cov=0/1	new_cov=47/43	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/44
RA	309	.	NC_012971	1952366	0	C	A	bias_e_value=0.0132822	bias_p_value=2.91344e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.9	fisher_strand_p_value=1.22287e-10	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=25/55	major_frequency=7.273e-01	minor_base=A	minor_cov=29/1	new_cov=29/1	polymorphism_frequency=2.727e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=25/55	total_cov=54/56
RA	310	.	NC_012971	1973596	0	T	C	consensus_score=15.3	frequency=1	major_base=C	major_cov=6/0	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/0	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/0
RA	311	.	NC_012971	2007879	0	A	T	consensus_score=556.3	frequency=1	major_base=T	major_cov=73/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/88
RA	312	.	NC_012971	2051825	0	A	C	bias_e_value=3191260	bias_p_value=0.699998	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.4	fisher_strand_p_value=0.333753	frequency=2.647e-01	ks_quality_p_value=1	major_base=A	major_cov=48/52	major_frequency=7.353e-01	minor_base=C	minor_cov=21/15	new_cov=21/15	polymorphism_frequency=2.647e-01	polymorphism_score=79.5	prediction=polymorphism	ref_cov=48/52	total_cov=69/67
RA	313	.	NC_012971	2051872	0	A	G	bias_e_value=3968410	bias_p_value=0.870464	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.4	fisher_strand_p_value=0.536326	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=49/44	major_frequency=7.500e-01	minor_base=G	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=2.500e-01	polymorphism_score=65.9	prediction=polymorphism	ref_cov=49/44	total_cov=64/61
RA	314	.	NC_012971	2051885	0	T	G	bias_e_value=4313280	bias_p_value=0.946111	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.9	fisher_strand_p_value=0.690209	frequency=2.893e-01	ks_quality_p_value=1	major_base=T	major_cov=46/40	major_frequency=7.107e-01	minor_base=G	minor_cov=17/18	new_cov=17/18	polymorphism_frequency=2.893e-01	polymorphism_score=82.6	prediction=polymorphism	ref_cov=46/40	total_cov=63/58
RA	315	.	NC_012971	2051887	0	T	C	bias_e_value=4284210	bias_p_value=0.939736	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.9	fisher_strand_p_value=0.673559	frequency=2.437e-01	ks_quality_p_value=1	major_base=T	major_cov=45/45	major_frequency=7.563e-01	minor_base=C	minor_cov=16/13	new_cov=16/13	polymorphism_frequency=2.437e-01	polymorphism_score=61.7	prediction=polymorphism	ref_cov=45/45	total_cov=62/58
RA	316	.	NC_012971	2052070	0	T	G	bias_e_value=114079	bias_p_value=0.025023	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.3	fisher_strand_p_value=0.00380835	frequency=2.118e-01	ks_quality_p_value=1	major_base=T	major_cov=37/30	major_frequency=7.882e-01	minor_base=G	minor_cov=3/15	new_cov=3/15	polymorphism_frequency=2.118e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=37/30	total_cov=40/45
RA	317	.	NC_012971	2052245	0	T	A	bias_e_value=2917150	bias_p_value=0.639873	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.1	fisher_strand_p_value=0.287861	frequency=2.143e-01	ks_quality_p_value=0.982124	major_base=T	major_cov=33/33	major_frequency=7.857e-01	minor_base=A	minor_cov=12/6	new_cov=12/6	polymorphism_frequency=2.143e-01	polymorphism_score=56.6	prediction=polymorphism	ref_cov=33/33	total_cov=55/49
RA	318	.	NC_012971	2052318	0	T	G	bias_e_value=3431560	bias_p_value=0.752707	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.3	fisher_strand_p_value=0.476182	frequency=2.300e-01	ks_quality_p_value=0.808998	major_base=T	major_cov=42/35	major_frequency=7.700e-01	minor_base=G	minor_cov=10/13	new_cov=10/13	polymorphism_frequency=2.300e-01	polymorphism_score=50.1	prediction=polymorphism	ref_cov=42/35	total_cov=52/48
RA	319	.	NC_012971	2052319	0	C	T	bias_e_value=3101950	bias_p_value=0.680408	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.4	fisher_strand_p_value=0.639024	frequency=2.212e-01	ks_quality_p_value=0.49501	major_base=C	major_cov=40/41	major_frequency=7.788e-01	minor_base=T	minor_cov=13/10	new_cov=13/10	polymorphism_frequency=2.212e-01	polymorphism_score=49.8	prediction=polymorphism	ref_cov=40/41	total_cov=53/52
RA	320	.	NC_012971	2052320	0	C	A	bias_e_value=4251930	bias_p_value=0.932656	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.4	fisher_strand_p_value=0.656213	frequency=2.571e-01	ks_quality_p_value=1	major_base=C	major_cov=38/40	major_frequency=7.429e-01	minor_base=A	minor_cov=15/12	new_cov=15/12	polymorphism_frequency=2.571e-01	polymorphism_score=55.2	prediction=polymorphism	ref_cov=38/40	total_cov=53/52
RA	321	.	NC_012971	2075017	0	A	C	bias_e_value=4558950	bias_p_value=1	consensus_score=308.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=39/46	major_frequency=9.884e-01	minor_base=T	minor_cov=0/1	new_cov=39/46	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=39/48
RA	322	.	NC_012971	2183267	0	G	T	bias_e_value=1.93264e-06	bias_p_value=4.23922e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.3	fisher_strand_p_value=1.28518e-14	frequency=2.840e-01	ks_quality_p_value=1	major_base=G	major_cov=69/47	major_frequency=7.160e-01	minor_base=T	minor_cov=0/46	new_cov=0/46	polymorphism_frequency=2.840e-01	polymorphism_score=24.9	prediction=polymorphism	ref_cov=69/47	total_cov=69/93
RA	323	.	NC_012971	2209947	0	C	A	bias_e_value=1244030	bias_p_value=0.272875	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.8	fisher_strand_p_value=0.162954	frequency=2.874e-01	ks_quality_p_value=0.468826	major_base=C	major_cov=29/33	major_frequency=7.126e-01	minor_base=A	minor_cov=16/9	new_cov=16/9	polymorphism_frequency=2.874e-01	polymorphism_score=68.0	prediction=polymorphism	ref_cov=29/33	total_cov=45/42
RA	324	.	NC_012971	2227497	0	G	A	consensus_score=242.7	frequency=1	major_base=A	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	325	.	NC_012971	2227498	0	G	A	consensus_score=248.0	frequency=1	major_base=A	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	326	.	NC_012971	2275119	0	A	T	consensus_score=466.0	frequency=1	major_base=T	major_cov=83/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/53
RA	327	.	NC_012971	2275120	0	A	G	bias_e_value=4558950	bias_p_value=1	consensus_score=495.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=82/53	major_frequency=9.926e-01	minor_base=A	minor_cov=1/0	new_cov=82/53	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=83/53
RA	328	.	NC_012971	2355153	0	A	C	bias_e_value=1.19997e-05	bias_p_value=2.63212e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.9	fisher_strand_p_value=8.4633e-14	frequency=2.651e-01	ks_quality_p_value=1	major_base=A	major_cov=8/53	major_frequency=7.349e-01	minor_base=C	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.651e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=8/53	total_cov=30/53
RA	329	.	NC_012971	2373775	0	C	T	consensus_score=312.3	frequency=1	major_base=T	major_cov=35/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/52
RA	330	.	NC_012971	2413824	0	G	A	bias_e_value=1533580	bias_p_value=0.336389	consensus_score=264.1	fisher_strand_p_value=0.102678	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/42	major_frequency=9.625e-01	minor_base=C	minor_cov=3/0	new_cov=35/42	polymorphism_frequency=9.625e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	331	.	NC_012971	2477975	0	T	C	consensus_score=236.6	frequency=1	major_base=C	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	332	.	NC_012971	2567019	0	C	T	consensus_score=271.8	frequency=1	major_base=T	major_cov=44/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/28
RA	333	.	NC_012971	2657957	0	A	C	bias_e_value=2446070	bias_p_value=0.536543	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.8	fisher_strand_p_value=0.209236	frequency=2.034e-01	ks_quality_p_value=1	major_base=A	major_cov=21/26	major_frequency=7.966e-01	minor_base=C	minor_cov=8/4	new_cov=8/4	polymorphism_frequency=2.034e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=21/26	total_cov=29/31
RA	334	.	NC_012971	2696054	0	G	T	bias_e_value=5.99903	bias_p_value=1.31588e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.2	fisher_strand_p_value=7.56368e-08	frequency=3.019e-01	ks_quality_p_value=1	major_base=G	major_cov=36/38	major_frequency=6.981e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.019e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=36/38	total_cov=36/70
RA	335	.	NC_012971	2764352	0	C	T	consensus_score=334.3	frequency=1	major_base=T	major_cov=43/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/60
RA	336	.	NC_012971	2855775	0	C	A	bias_e_value=5.76931e-07	bias_p_value=1.26549e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=281.1	fisher_strand_p_value=3.69688e-15	frequency=2.574e-01	ks_quality_p_value=1	major_base=C	major_cov=29/72	major_frequency=7.426e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.574e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=29/72	total_cov=64/72
RA	337	.	NC_012971	2879376	0	C	A	consensus_score=243.5	frequency=1	major_base=A	major_cov=29/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/43
RA	338	.	NC_012971	2880243	0	C	T	bias_e_value=4558950	bias_p_value=1	consensus_score=302.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/37	major_frequency=9.889e-01	minor_base=C	minor_cov=1/0	new_cov=52/37	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/37
RA	339	.	NC_012971	2880800	0	T	C	consensus_score=324.0	frequency=1	major_base=C	major_cov=37/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/52
RA	340	.	NC_012971	2885744	0	G	T	bias_e_value=0.153409	bias_p_value=3.365e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.9	fisher_strand_p_value=1.58247e-09	frequency=2.178e-01	ks_quality_p_value=1	major_base=G	major_cov=25/54	major_frequency=7.822e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.178e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=25/54	total_cov=47/54
RA	341	.	NC_012971	2885752	0	G	T	bias_e_value=0.587725	bias_p_value=1.28917e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.2	fisher_strand_p_value=6.49375e-09	frequency=2.159e-01	ks_quality_p_value=1	major_base=G	major_cov=15/54	major_frequency=7.841e-01	minor_base=T	minor_cov=18/1	new_cov=18/1	polymorphism_frequency=2.159e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=15/54	total_cov=33/55
RA	342	.	NC_012971	2891803	0	G	A	bias_e_value=4558950	bias_p_value=1	consensus_score=358.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/66	major_frequency=9.903e-01	minor_base=G	minor_cov=0/1	new_cov=36/66	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/67
RA	343	.	NC_012971	2891814	0	A	C	consensus_score=372.2	frequency=1	major_base=C	major_cov=33/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/68
RA	344	.	NC_012971	3057477	0	G	T	bias_e_value=5.17832	bias_p_value=1.13586e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.6	fisher_strand_p_value=6.47088e-08	frequency=2.128e-01	ks_quality_p_value=1	major_base=G	major_cov=54/57	major_frequency=7.872e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.128e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=54/57	total_cov=54/87
RA	345	.	NC_012971	3162393	0	C	T	consensus_score=308.0	frequency=1	major_base=T	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	346	.	NC_012971	3197975	0	A	G	consensus_score=290.6	frequency=1	major_base=G	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	347	.	NC_012971	3197976	0	A	T	bias_e_value=3838780	bias_p_value=0.84203	consensus_score=256.1	fisher_strand_p_value=0.493506	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/39	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=37/39	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	348	.	NC_012971	3443292	0	G	A	bias_e_value=4558950	bias_p_value=1	consensus_score=339.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/43	major_frequency=9.895e-01	minor_base=C	minor_cov=1/0	new_cov=51/43	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/43
RA	349	.	NC_012971	3481728	0	G	C	bias_e_value=4558770	bias_p_value=0.999959	consensus_reject=FREQUENCY_CUTOFF	consensus_score=241.6	fisher_strand_p_value=1	frequency=2.062e-01	ks_quality_p_value=0.99099	major_base=G	major_cov=31/46	major_frequency=7.938e-01	minor_base=C	minor_cov=8/12	new_cov=8/12	polymorphism_frequency=2.062e-01	polymorphism_score=55.3	prediction=polymorphism	ref_cov=31/46	total_cov=39/59
RA	350	.	NC_012971	3481765	0	A	C	bias_e_value=3927440	bias_p_value=0.861479	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.5	fisher_strand_p_value=0.522205	frequency=2.743e-01	ks_quality_p_value=1	major_base=A	major_cov=31/51	major_frequency=7.257e-01	minor_base=C	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=2.743e-01	polymorphism_score=82.2	prediction=polymorphism	ref_cov=31/51	total_cov=45/68
RA	351	.	NC_012971	3481767	0	C	T	bias_e_value=3936290	bias_p_value=0.86342	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.4	fisher_strand_p_value=0.525205	frequency=2.768e-01	ks_quality_p_value=1	major_base=C	major_cov=31/50	major_frequency=7.232e-01	minor_base=T	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=2.768e-01	polymorphism_score=83.7	prediction=polymorphism	ref_cov=31/50	total_cov=45/67
RA	352	.	NC_012971	3481778	0	C	G	bias_e_value=3486950	bias_p_value=0.764857	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.6	fisher_strand_p_value=0.398193	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=30/50	major_frequency=7.143e-01	minor_base=G	minor_cov=15/17	new_cov=15/17	polymorphism_frequency=2.857e-01	polymorphism_score=102.0	prediction=polymorphism	ref_cov=30/50	total_cov=45/67
RA	353	.	NC_012971	3482990	0	A	G	bias_e_value=22086.5	bias_p_value=0.00484464	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.2	fisher_strand_p_value=0.00122868	frequency=4.488e-01	ks_quality_p_value=0.465746	major_base=A	major_cov=43/27	major_frequency=5.512e-01	minor_base=G	minor_cov=18/39	new_cov=18/39	polymorphism_frequency=4.488e-01	polymorphism_score=165.1	prediction=polymorphism	ref_cov=43/27	total_cov=62/66
RA	354	.	NC_012971	3483028	0	T	A	bias_e_value=167390	bias_p_value=0.0367168	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.8	fisher_strand_p_value=0.00680116	frequency=4.640e-01	ks_quality_p_value=0.8828	major_base=T	major_cov=36/31	major_frequency=5.360e-01	minor_base=A	minor_cov=17/41	new_cov=17/41	polymorphism_frequency=4.640e-01	polymorphism_score=233.6	prediction=polymorphism	ref_cov=36/31	total_cov=53/72
RA	355	.	NC_012971	3483030	0	G	A	bias_e_value=185317	bias_p_value=0.0406491	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.6	fisher_strand_p_value=0.00680116	frequency=4.640e-01	ks_quality_p_value=0.997221	major_base=G	major_cov=36/31	major_frequency=5.360e-01	minor_base=A	minor_cov=17/41	new_cov=17/41	polymorphism_frequency=4.640e-01	polymorphism_score=177.6	prediction=polymorphism	ref_cov=36/31	total_cov=53/72
RA	356	.	NC_012971	3483093	0	T	C	bias_e_value=1113310	bias_p_value=0.244203	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.0	fisher_strand_p_value=0.0837974	frequency=4.454e-01	ks_quality_p_value=0.782389	major_base=T	major_cov=28/38	major_frequency=5.546e-01	minor_base=C	minor_cov=14/39	new_cov=14/39	polymorphism_frequency=4.454e-01	polymorphism_score=165.4	prediction=polymorphism	ref_cov=28/38	total_cov=42/77
RA	357	.	NC_012971	3483975	0	C	T	bias_e_value=4067050	bias_p_value=0.892103	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.7	fisher_strand_p_value=0.840683	frequency=6.019e-01	ks_quality_p_value=0.681624	major_base=T	major_cov=31/31	major_frequency=6.019e-01	minor_base=C	minor_cov=19/22	new_cov=31/31	polymorphism_frequency=6.019e-01	polymorphism_score=123.3	prediction=polymorphism	ref_cov=19/22	total_cov=50/53
RA	358	.	NC_012971	3483977	0	G	A	bias_e_value=4497750	bias_p_value=0.986576	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.9	fisher_strand_p_value=0.840683	frequency=6.019e-01	ks_quality_p_value=1	major_base=A	major_cov=31/31	major_frequency=6.019e-01	minor_base=G	minor_cov=19/22	new_cov=31/31	polymorphism_frequency=6.019e-01	polymorphism_score=121.7	prediction=polymorphism	ref_cov=19/22	total_cov=50/53
RA	359	.	NC_012971	3483978	0	G	C	bias_e_value=4498160	bias_p_value=0.986665	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.2	fisher_strand_p_value=0.841197	frequency=5.980e-01	ks_quality_p_value=1	major_base=C	major_cov=30/31	major_frequency=5.980e-01	minor_base=G	minor_cov=19/22	new_cov=30/31	polymorphism_frequency=5.980e-01	polymorphism_score=144.4	prediction=polymorphism	ref_cov=19/22	total_cov=50/53
RA	360	.	NC_012971	3483982	0	T	G	bias_e_value=4245620	bias_p_value=0.931271	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.9	fisher_strand_p_value=0.695921	frequency=5.849e-01	ks_quality_p_value=0.938248	major_base=G	major_cov=31/31	major_frequency=5.849e-01	minor_base=T	minor_cov=20/24	new_cov=31/31	polymorphism_frequency=5.849e-01	polymorphism_score=121.2	prediction=polymorphism	ref_cov=20/24	total_cov=51/55
RA	361	.	NC_012971	3484075	0	T	A	bias_e_value=4509080	bias_p_value=0.989061	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.1	fisher_strand_p_value=0.856332	frequency=5.574e-01	ks_quality_p_value=0.999357	major_base=A	major_cov=33/35	major_frequency=5.574e-01	minor_base=T	minor_cov=25/29	new_cov=33/35	polymorphism_frequency=5.574e-01	polymorphism_score=214.3	prediction=polymorphism	ref_cov=25/29	total_cov=58/65
RA	362	.	NC_012971	3484086	0	C	T	bias_e_value=4484710	bias_p_value=0.983715	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.9	fisher_strand_p_value=0.860357	frequency=5.625e-01	ks_quality_p_value=0.958952	major_base=T	major_cov=36/36	major_frequency=5.625e-01	minor_base=C	minor_cov=27/29	new_cov=36/36	polymorphism_frequency=5.625e-01	polymorphism_score=171.3	prediction=polymorphism	ref_cov=27/29	total_cov=63/65
RA	363	.	NC_012971	3484130	0	A	T	bias_e_value=3547500	bias_p_value=0.778139	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.5	fisher_strand_p_value=0.466895	frequency=5.537e-01	ks_quality_p_value=0.884374	major_base=T	major_cov=31/36	major_frequency=5.537e-01	minor_base=A	minor_cov=29/25	new_cov=31/36	polymorphism_frequency=5.537e-01	polymorphism_score=216.3	prediction=polymorphism	ref_cov=29/25	total_cov=60/61
RA	364	.	NC_012971	3484133	0	A	C	bias_e_value=3261860	bias_p_value=0.715484	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.0	fisher_strand_p_value=0.353936	frequency=5.641e-01	ks_quality_p_value=0.983636	major_base=C	major_cov=30/36	major_frequency=5.641e-01	minor_base=A	minor_cov=28/23	new_cov=30/36	polymorphism_frequency=5.641e-01	polymorphism_score=143.3	prediction=polymorphism	ref_cov=28/23	total_cov=59/59
RA	365	.	NC_012971	3484234	0	A	G	bias_e_value=3411530	bias_p_value=0.748315	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.1	fisher_strand_p_value=0.475655	frequency=5.079e-01	ks_quality_p_value=0.800276	major_base=G	major_cov=28/36	major_frequency=5.079e-01	minor_base=A	minor_cov=32/30	new_cov=28/36	polymorphism_frequency=5.079e-01	polymorphism_score=200.8	prediction=polymorphism	ref_cov=32/30	total_cov=60/68
RA	366	.	NC_012971	3484399	0	T	C	bias_e_value=2802430	bias_p_value=0.614709	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.9	fisher_strand_p_value=0.613141	frequency=3.239e-01	ks_quality_p_value=0.429483	major_base=T	major_cov=27/21	major_frequency=6.761e-01	minor_base=C	minor_cov=11/12	new_cov=11/12	polymorphism_frequency=3.239e-01	polymorphism_score=62.6	prediction=polymorphism	ref_cov=27/21	total_cov=38/33
RA	367	.	NC_012971	3484464	0	C	G	bias_e_value=4558950	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.8	fisher_strand_p_value=1	frequency=2.143e-01	ks_quality_p_value=1	major_base=C	major_cov=17/16	major_frequency=7.857e-01	minor_base=G	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.143e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=17/16	total_cov=21/21
RA	368	.	NC_012971	3484467	0	C	T	bias_e_value=4558950	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.8	fisher_strand_p_value=1	frequency=2.143e-01	ks_quality_p_value=1	major_base=C	major_cov=17/16	major_frequency=7.857e-01	minor_base=T	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.143e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=17/16	total_cov=21/21
RA	369	.	NC_012971	3484472	0	A	G	bias_e_value=4364860	bias_p_value=0.957425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.6	fisher_strand_p_value=1	frequency=2.143e-01	ks_quality_p_value=0.722762	major_base=A	major_cov=17/16	major_frequency=7.857e-01	minor_base=G	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.143e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=17/16	total_cov=21/21
RA	370	.	NC_012971	3484526	0	C	A	bias_e_value=2579450	bias_p_value=0.565799	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.4	fisher_strand_p_value=0.233179	frequency=3.393e-01	ks_quality_p_value=0.979884	major_base=C	major_cov=22/15	major_frequency=6.607e-01	minor_base=A	minor_cov=15/4	new_cov=15/4	polymorphism_frequency=3.393e-01	polymorphism_score=40.5	prediction=polymorphism	ref_cov=22/15	total_cov=37/19
RA	371	.	NC_012971	3484590	0	A	G	bias_e_value=3275750	bias_p_value=0.718531	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.0	fisher_strand_p_value=0.351069	frequency=4.026e-01	ks_quality_p_value=0.999927	major_base=A	major_cov=26/20	major_frequency=5.974e-01	minor_base=G	minor_cov=21/10	new_cov=21/10	polymorphism_frequency=4.026e-01	polymorphism_score=87.7	prediction=polymorphism	ref_cov=26/20	total_cov=47/30
RA	372	.	NC_012971	3484596	0	A	G	bias_e_value=3348460	bias_p_value=0.73448	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.5	fisher_strand_p_value=0.366602	frequency=3.951e-01	ks_quality_p_value=1	major_base=A	major_cov=27/22	major_frequency=6.049e-01	minor_base=G	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.951e-01	polymorphism_score=94.5	prediction=polymorphism	ref_cov=27/22	total_cov=48/33
RA	373	.	NC_012971	3484642	0	G	C	bias_e_value=4031240	bias_p_value=0.884247	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.5	fisher_strand_p_value=0.66513	frequency=4.205e-01	ks_quality_p_value=0.840771	major_base=G	major_cov=29/22	major_frequency=5.795e-01	minor_base=C	minor_cov=23/14	new_cov=23/14	polymorphism_frequency=4.205e-01	polymorphism_score=134.0	prediction=polymorphism	ref_cov=29/22	total_cov=52/36
RA	374	.	NC_012971	3484804	0	A	G	bias_e_value=2991110	bias_p_value=0.656095	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.2	fisher_strand_p_value=0.30301	frequency=5.259e-01	ks_quality_p_value=0.976175	major_base=G	major_cov=39/32	major_frequency=5.259e-01	minor_base=A	minor_cov=29/35	new_cov=39/32	polymorphism_frequency=5.259e-01	polymorphism_score=205.0	prediction=polymorphism	ref_cov=29/35	total_cov=69/67
RA	375	.	NC_012971	3484806	0	C	G	bias_e_value=3440420	bias_p_value=0.754652	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.5	fisher_strand_p_value=0.387275	frequency=5.188e-01	ks_quality_p_value=1	major_base=G	major_cov=37/32	major_frequency=5.188e-01	minor_base=C	minor_cov=29/35	new_cov=37/32	polymorphism_frequency=5.188e-01	polymorphism_score=232.3	prediction=polymorphism	ref_cov=29/35	total_cov=68/67
RA	376	.	NC_012971	3484950	0	T	C	bias_e_value=4381360	bias_p_value=0.961044	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.3	fisher_strand_p_value=0.74292	frequency=5.667e-01	ks_quality_p_value=0.988245	major_base=C	major_cov=42/43	major_frequency=5.667e-01	minor_base=T	minor_cov=30/35	new_cov=42/43	polymorphism_frequency=5.667e-01	polymorphism_score=197.2	prediction=polymorphism	ref_cov=30/35	total_cov=72/78
RA	377	.	NC_012971	3485921	0	G	A	bias_e_value=0.0264619	bias_p_value=5.80439e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.9	fisher_strand_p_value=2.51221e-10	frequency=2.609e-01	ks_quality_p_value=1	major_base=G	major_cov=55/47	major_frequency=7.391e-01	minor_base=A	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.609e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=55/47	total_cov=55/89
RA	378	.	NC_012971	3496959	0	C	T	consensus_score=489.1	frequency=1	major_base=T	major_cov=64/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/79
RA	379	.	NC_012971	3530903	0	G	T	bias_e_value=0.0447277	bias_p_value=9.81095e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.7	fisher_strand_p_value=4.34964e-10	frequency=2.920e-01	ks_quality_p_value=1	major_base=G	major_cov=46/34	major_frequency=7.080e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.920e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=46/34	total_cov=46/67
RA	380	.	NC_012971	3561504	0	G	A	bias_e_value=1820410	bias_p_value=0.399304	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.3	fisher_strand_p_value=0.132005	frequency=2.059e-01	ks_quality_p_value=1	major_base=G	major_cov=24/30	major_frequency=7.941e-01	minor_base=A	minor_cov=10/4	new_cov=10/4	polymorphism_frequency=2.059e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=24/30	total_cov=34/35
RA	381	.	NC_012971	3604023	0	G	T	bias_e_value=0.0683403	bias_p_value=1.49903e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.0	fisher_strand_p_value=6.77929e-10	frequency=2.542e-01	ks_quality_p_value=1	major_base=G	major_cov=52/36	major_frequency=7.458e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.542e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=52/36	total_cov=52/66
RA	382	.	NC_012971	3732117	0	C	A	bias_e_value=6.4848	bias_p_value=1.42243e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.1	fisher_strand_p_value=8.21517e-08	frequency=2.685e-01	ks_quality_p_value=1	major_base=C	major_cov=65/44	major_frequency=7.315e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.685e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=65/44	total_cov=105/44
RA	383	.	NC_012971	3733869	0	T	G	consensus_score=258.2	frequency=1	major_base=G	major_cov=44/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/27
RA	384	.	NC_012971	3757620	0	G	A	consensus_score=270.1	frequency=1	major_base=A	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	385	.	NC_012971	3764190	0	G	A	bias_e_value=5.9907	bias_p_value=1.31405e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.1	fisher_strand_p_value=7.55254e-08	frequency=2.315e-01	ks_quality_p_value=1	major_base=G	major_cov=46/37	major_frequency=7.685e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.315e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=46/37	total_cov=46/65
RA	386	.	NC_012971	3764192	0	G	A	bias_e_value=6.78329	bias_p_value=1.4879e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.4	fisher_strand_p_value=8.61707e-08	frequency=2.321e-01	ks_quality_p_value=1	major_base=G	major_cov=47/39	major_frequency=7.679e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.321e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=47/39	total_cov=47/66
RA	387	.	NC_012971	3817054	0	T	C	consensus_score=275.7	frequency=1	major_base=C	major_cov=47/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/27
RA	388	.	NC_012971	3981159	0	C	A	bias_e_value=6.19088	bias_p_value=1.35796e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.7	fisher_strand_p_value=7.82059e-08	frequency=3.000e-01	ks_quality_p_value=1	major_base=C	major_cov=35/42	major_frequency=7.000e-01	minor_base=A	minor_cov=32/1	new_cov=32/1	polymorphism_frequency=3.000e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=35/42	total_cov=67/43
RA	389	.	NC_012971	3997577	0	A	G	consensus_score=343.2	frequency=1	major_base=G	major_cov=50/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/43
RA	390	.	NC_012971	4045014	0	A	C	bias_e_value=15303	bias_p_value=0.0033567	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.9	fisher_strand_p_value=0.000377978	frequency=2.195e-01	ks_quality_p_value=1	major_base=A	major_cov=37/27	major_frequency=7.805e-01	minor_base=C	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.195e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=37/27	total_cov=56/27
RA	391	.	NC_012971	4072111	0	T	C	bias_e_value=3849140	bias_p_value=0.844303	consensus_score=342.2	fisher_strand_p_value=0.496739	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/46	major_frequency=9.796e-01	minor_base=T	minor_cov=2/0	new_cov=50/46	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=52/46
RA	392	.	NC_012971	4108278	0	C	T	consensus_score=348.4	frequency=1	major_base=T	major_cov=54/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/38
RA	393	.	NC_012971	4179097	0	C	.	consensus_score=391.6	frequency=1	major_base=.	major_cov=48/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/33
RA	394	.	NC_012971	4181483	0	C	T	bias_e_value=3661390	bias_p_value=0.80312	consensus_score=367.7	fisher_strand_p_value=0.442308	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=58/45	major_frequency=9.904e-01	minor_base=G	minor_cov=0/1	new_cov=58/45	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/46
RA	395	.	NC_012971	4268051	0	C	A	bias_e_value=1.69527e-06	bias_p_value=3.71855e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.6	fisher_strand_p_value=1.12274e-14	frequency=2.553e-01	ks_quality_p_value=1	major_base=C	major_cov=33/72	major_frequency=7.447e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.553e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=33/72	total_cov=69/72
RA	396	.	NC_012971	4395355	0	G	T	bias_e_value=3728360	bias_p_value=0.817812	consensus_score=360.5	fisher_strand_p_value=0.460784	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=55/46	major_frequency=9.902e-01	minor_base=G	minor_cov=0/1	new_cov=55/46	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=55/47
RA	397	.	NC_012971	4536521	0	G	T	bias_e_value=46.9001	bias_p_value=1.02875e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.2	fisher_strand_p_value=6.76527e-07	frequency=2.299e-01	ks_quality_p_value=1	major_base=G	major_cov=40/27	major_frequency=7.701e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.299e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=40/27	total_cov=40/47
MC	398	.	NC_012971	543877	549187	528	0	left_inside_cov=32	left_outside_cov=33	right_inside_cov=0	right_outside_cov=121
MC	399	.	NC_012971	550423	550552	0	0	left_inside_cov=32	left_outside_cov=33	right_inside_cov=0	right_outside_cov=53
MC	400	.	NC_012971	550998	597471	0	575	left_inside_cov=0	left_outside_cov=130	right_inside_cov=32	right_outside_cov=35
MC	401	.	NC_012971	748650	753098	0	0	left_inside_cov=1	left_outside_cov=124	right_inside_cov=4	right_outside_cov=125
MC	402	.	NC_012971	754416	762860	0	0	left_inside_cov=32	left_outside_cov=33	right_inside_cov=10	right_outside_cov=118
MC	403	.	NC_012971	763233	767816	0	0	left_inside_cov=31	left_outside_cov=40	right_inside_cov=32	right_outside_cov=36
MC	404	.	NC_012971	767940	788118	0	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=32	right_outside_cov=33
MC	405	.	NC_012971	788131	791178	0	0	left_inside_cov=0	left_outside_cov=53	right_inside_cov=31	right_outside_cov=34
MC	406	.	NC_012971	1586962	1588051	0	1088	left_inside_cov=0	left_outside_cov=129	right_inside_cov=32	right_outside_cov=35
MC	407	.	NC_012971	2068532	2069307	768	0	left_inside_cov=0	left_outside_cov=90	right_inside_cov=2	right_outside_cov=92
MC	408	.	NC_012971	2517851	2519295	0	0	left_inside_cov=0	left_outside_cov=72	right_inside_cov=0	right_outside_cov=72
MC	409	.	NC_012971	2820977	2822422	0	0	left_inside_cov=0	left_outside_cov=97	right_inside_cov=0	right_outside_cov=96
MC	410	.	NC_012971	2943444	2963014	0	0	left_inside_cov=32	left_outside_cov=33	right_inside_cov=32	right_outside_cov=33
MC	411	.	NC_012971	2969387	2970056	0	0	left_inside_cov=0	left_outside_cov=59	right_inside_cov=0	right_outside_cov=59
MC	412	.	NC_012971	3628812	3628930	0	0	left_inside_cov=32	left_outside_cov=34	right_inside_cov=32	right_outside_cov=33
MC	413	.	NC_012971	3822341	3823781	0	1437	left_inside_cov=0	left_outside_cov=81	right_inside_cov=3	right_outside_cov=84
MC	414	.	NC_012971	3944669	3946333	1135	95	left_inside_cov=32	left_outside_cov=33	right_inside_cov=31	right_outside_cov=34
MC	415	.	NC_012971	4153661	4159658	0	0	left_inside_cov=0	left_outside_cov=134	right_inside_cov=0	right_outside_cov=80
JC	416	.	NC_012971	1	1	NC_012971	4558953	-1	0	alignment_overlap=0	coverage_minus=78	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_012971__1__1__NC_012971__4558953__-1__0____300__300__0__0	max_left=294	max_left_minus=294	max_left_plus=291	max_min_left=149	max_min_left_minus=149	max_min_left_plus=144	max_min_right=144	max_min_right_minus=141	max_min_right_plus=144	max_pos_hash_score=590	max_right=289	max_right_minus=281	max_right_plus=289	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.43	new_junction_read_count=138	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=134
JC	417	.	NC_012971	536615	-1	NC_012971	762861	1	0	alignment_overlap=17	coverage_minus=54	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=277	key=NC_012971__536615__-1__NC_012971__762844__1__17____300__300__0__0	max_left=278	max_left_minus=270	max_left_plus=278	max_min_left=140	max_min_left_minus=140	max_min_left_plus=138	max_min_right=136	max_min_right_minus=136	max_min_right_plus=133	max_pos_hash_score=556	max_right=277	max_right_minus=274	max_right_plus=277	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.19	new_junction_read_count=108	polymorphism_frequency=9.459e-01	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.11	side_1_overlap=17	side_1_possible_overlap_registers=294	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=87
JC	418	.	NC_012971	549188	1	NC_012971	2827816	1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=6.366e-01	junction_possible_overlap_registers=294	key=NC_012971__549188__1__NC_012971__2827816__1__0____300__300__0__0	max_left=289	max_left_minus=250	max_left_plus=289	max_min_left=149	max_min_left_minus=147	max_min_left_plus=149	max_min_right=142	max_min_right_minus=134	max_min_right_plus=142	max_pos_hash_score=590	max_right=291	max_right_minus=279	max_right_plus=291	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.25	new_junction_read_count=120	polymorphism_frequency=6.366e-01	pos_hash_score=64	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.42	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=137	side_2_redundant=0	total_non_overlap_reads=118
JC	419	.	NC_012971	550553	1	NC_012971	788130	-1	0	alignment_overlap=1	coverage_minus=27	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_012971__550553__1__NC_012971__788131__-1__1____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=289	max_min_left=143	max_min_left_minus=143	max_min_left_plus=0	max_min_right=144	max_min_right_minus=144	max_min_right_plus=123	max_pos_hash_score=588	max_right=144	max_right_minus=144	max_right_plus=123	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.55	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=38
JC	420	.	NC_012971	550997	-1	NC_012971	1586961	-1	0	alignment_overlap=2	coverage_minus=63	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_012971__550997__-1__NC_012971__1586963__-1__2____300__300__0__0	max_left=296	max_left_minus=293	max_left_plus=296	max_min_left=147	max_min_left_minus=122	max_min_left_plus=147	max_min_right=147	max_min_right_minus=147	max_min_right_plus=142	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.35	new_junction_read_count=129	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=118
JC	421	.	NC_012971	656380	-1	NC_012971	656930	1	-45	alignment_overlap=-45	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.527e-02	junction_possible_overlap_registers=249	key=NC_012971__656380__-1__NC_012971__656930__1__-45__AAATTGGTTTTGAATTTGCCGAACATATTCGACACATTCAGAATT__300__300__0__0	max_left=176	max_left_minus=71	max_left_plus=176	max_min_left=71	max_min_left_minus=71	max_min_left_plus=70	max_min_right=78	max_min_right_minus=0	max_min_right_plus=78	max_pos_hash_score=500	max_right=199	max_right_minus=184	max_right_plus=199	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=8.527e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=AAATTGGTTTTGAATTTGCCGAACATATTCGACACATTCAGAATT
JC	422	.	NC_012971	656490	-1	NC_012971	656814	1	0	alignment_overlap=29	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.585e-02	junction_possible_overlap_registers=265	key=NC_012971__656490__-1__NC_012971__656785__1__29____300__300__0__0	max_left=107	max_left_minus=107	max_left_plus=107	max_min_left=107	max_min_left_minus=107	max_min_left_plus=107	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=532	max_right=176	max_right_minus=176	max_right_plus=176	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.585e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=29	side_1_possible_overlap_registers=294	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=265	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=4
JC	423	.	NC_012971	656615	-1	NC_012971	657008	1	0	alignment_overlap=78	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.377e-01	junction_possible_overlap_registers=216	key=NC_012971__656615__-1__NC_012971__656930__1__78____300__300__0__0	max_left=141	max_left_minus=141	max_left_plus=115	max_min_left=101	max_min_left_minus=0	max_min_left_plus=101	max_min_right=106	max_min_right_minus=106	max_min_right_plus=55	max_pos_hash_score=434	max_right=121	max_right_minus=106	max_right_plus=121	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.11	new_junction_read_count=8	polymorphism_frequency=1.377e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=51	side_2_redundant=0	total_non_overlap_reads=8
JC	424	.	NC_012971	656704	-1	NC_012971	656814	1	0	alignment_overlap=77	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.486e-02	junction_possible_overlap_registers=217	key=NC_012971__656704__-1__NC_012971__656737__1__77____300__300__0__0	max_left=100	max_left_minus=75	max_left_plus=100	max_min_left=100	max_min_left_minus=0	max_min_left_plus=100	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=436	max_right=123	max_right_minus=47	max_right_plus=123	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=6.486e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=77	side_1_possible_overlap_registers=294	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=217	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	425	.	NC_012971	739290	-1	NC_012971	739580	1	0	alignment_overlap=76	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.419e-02	junction_possible_overlap_registers=218	key=NC_012971__739290__-1__NC_012971__739504__1__76____300__300__0__0	max_left=184	max_left_minus=170	max_left_plus=184	max_min_left=55	max_min_left_minus=55	max_min_left_plus=55	max_min_right=87	max_min_right_minus=51	max_min_right_plus=87	max_pos_hash_score=438	max_right=143	max_right_minus=143	max_right_plus=143	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=9.419e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=6
JC	426	.	NC_012971	739425	1	NC_012971	2397543	-1	-45	alignment_overlap=-45	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.425e-02	junction_possible_overlap_registers=249	key=NC_012971__739425__1__NC_012971__2397543__-1__-45__CTTCGGTACTTCACATTTTTACAAGAAATTTAGCTGGCGAGAAAG__300__300__0__0	max_left=44	max_left_minus=44	max_left_plus=44	max_min_left=44	max_min_left_minus=44	max_min_left_plus=44	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=500	max_right=225	max_right_minus=225	max_right_plus=100	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.425e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=CTTCGGTACTTCACATTTTTACAAGAAATTTAGCTGGCGAGAAAG
JC	427	.	NC_012971	739579	-1	NC_012971	740008	1	0	alignment_overlap=76	coverage_minus=7	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=2.131e-01	junction_possible_overlap_registers=218	key=NC_012971__739579__-1__NC_012971__739932__1__76____300__300__0__0	max_left=221	max_left_minus=221	max_left_plus=93	max_min_left=92	max_min_left_minus=83	max_min_left_plus=92	max_min_right=96	max_min_right_minus=96	max_min_right_plus=22	max_pos_hash_score=438	max_right=132	max_right_minus=116	max_right_plus=132	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.18	new_junction_read_count=13	polymorphism_frequency=2.131e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=12
JC	428	.	NC_012971	739631	1	NC_012971	2397543	-1	-46	alignment_overlap=-46	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.902e-02	junction_possible_overlap_registers=248	key=NC_012971__739631__1__NC_012971__2397543__-1__-46__ACTTCGGTACTTCACATTTTTACAAGAAATTTAGCTGGCGAGAAAG__300__300__0__0	max_left=43	max_left_minus=43	max_left_plus=43	max_min_left=43	max_min_left_minus=43	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=498	max_right=225	max_right_minus=225	max_right_plus=100	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.902e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=ACTTCGGTACTTCACATTTTTACAAGAAATTTAGCTGGCGAGAAAG
JC	429	.	NC_012971	739785	-1	NC_012971	740008	1	0	alignment_overlap=76	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.732e-01	junction_possible_overlap_registers=218	key=NC_012971__739785__-1__NC_012971__739932__1__76____300__300__0__0	max_left=119	max_left_minus=119	max_left_plus=110	max_min_left=89	max_min_left_minus=89	max_min_left_plus=50	max_min_right=64	max_min_right_minus=53	max_min_right_plus=64	max_pos_hash_score=438	max_right=192	max_right_minus=166	max_right_plus=192	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.17	new_junction_read_count=12	polymorphism_frequency=1.732e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=10
JC	430	.	NC_012971	739932	1	NC_012971	2397543	-1	-2	alignment_overlap=-2	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.823e-02	junction_possible_overlap_registers=292	key=NC_012971__739932__1__NC_012971__2397543__-1__-2__GG__300__300__0__0	max_left=192	max_left_minus=192	max_left_plus=192	max_min_left=48	max_min_left_minus=0	max_min_left_plus=48	max_min_right=67	max_min_right_minus=67	max_min_right_plus=67	max_pos_hash_score=586	max_right=247	max_right_minus=67	max_right_plus=247	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=6.823e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=GG
JC	431	.	NC_012971	739932	1	NC_012971	2397664	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.688e-02	junction_possible_overlap_registers=293	key=NC_012971__739932__1__NC_012971__2397664__-1__-1__G__300__300__0__0	max_left=192	max_left_minus=192	max_left_plus=192	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=588	max_right=68	max_right_minus=68	max_right_plus=68	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=6.688e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=G
JC	432	.	NC_012971	748649	-1	NC_012971	753099	1	0	alignment_overlap=7	coverage_minus=69	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=287	key=NC_012971__748649__-1__NC_012971__753092__1__7____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=282	max_min_left=141	max_min_left_minus=141	max_min_left_plus=136	max_min_right=146	max_min_right_minus=108	max_min_right_plus=146	max_pos_hash_score=576	max_right=287	max_right_minus=287	max_right_plus=287	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.29	new_junction_read_count=121	polymorphism_frequency=9.960e-01	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=7	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=118
JC	433	.	NC_012971	767939	-1	NC_012971	1427848	-1	-99	alignment_overlap=-99	coverage_minus=24	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=195	key=NC_012971__767939__-1__NC_012971__1427848__-1__-99__TGACCATTTCACAAGTGACAGAGTCAATATCGTATTCTGTCACTGTCAGGCTAATACAGCAATGCAATTCAACTACAGCAATGCCTCGTATTTAGGTGA__300__300__0__1	max_left=186	max_left_minus=170	max_left_plus=186	max_min_left=88	max_min_left_minus=60	max_min_left_plus=88	max_min_right=96	max_min_right_minus=96	max_min_right_plus=91	max_pos_hash_score=392	max_right=188	max_right_minus=188	max_right_plus=183	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.25	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=67	unique_read_sequence=TGACCATTTCACAAGTGACAGAGTCAATATCGTATTCTGTCACTGTCAGGCTAATACAGCAATGCAATTCAACTACAGCAATGCCTCGTATTTAGGTGA
JC	434	.	NC_012971	930604	-1	NC_012971	930960	1	0	alignment_overlap=59	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=9.492e-02	junction_possible_overlap_registers=235	key=NC_012971__930604__-1__NC_012971__930901__1__59____300__300__0__0	max_left=58	max_left_minus=58	max_left_plus=58	max_min_left=58	max_min_left_minus=58	max_min_left_plus=58	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=472	max_right=217	max_right_minus=217	max_right_plus=196	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=9.492e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=59	side_1_possible_overlap_registers=294	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=5
JC	435	.	NC_012971	2068531	-1	NC_012971	2069308	1	0	alignment_overlap=9	coverage_minus=49	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_012971__2068531__-1__NC_012971__2069299__1__9____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=279	max_min_left=142	max_min_left_minus=142	max_min_left_plus=126	max_min_right=144	max_min_right_minus=144	max_min_right_plus=131	max_pos_hash_score=572	max_right=289	max_right_minus=260	max_right_plus=289	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=87
JC	436	.	NC_012971	2135130	-1	NC_012971	2135131	1	-5	alignment_overlap=-5	coverage_minus=57	coverage_plus=54	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_012971__2135130__-1__NC_012971__2135131__1__-5__GACAT__300__300__0__0	max_left=287	max_left_minus=287	max_left_plus=283	max_min_left=145	max_min_left_minus=134	max_min_left_plus=145	max_min_right=145	max_min_right_minus=145	max_min_right_plus=145	max_pos_hash_score=580	max_right=288	max_right_minus=288	max_right_plus=287	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.18	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=111	unique_read_sequence=GACAT
JC	437	.	NC_012971	2388451	-1	NC_012971	2388920	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.170e-02	junction_possible_overlap_registers=285	key=NC_012971__2388451__-1__NC_012971__2388911__1__9____300__300__0__0	max_left=88	max_left_minus=88	max_left_plus=88	max_min_left=56	max_min_left_minus=56	max_min_left_plus=56	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=572	max_right=148	max_right_minus=148	max_right_plus=148	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.170e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=116	side_2_redundant=0	total_non_overlap_reads=4
JC	438	.	NC_012971	2397468	1	NC_012971	2397543	-1	-46	alignment_overlap=-46	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.039e-02	junction_possible_overlap_registers=248	key=NC_012971__2397468__1__NC_012971__2397543__-1__-46__ACTTCGGTACTTCACATTTTTACAAGAAATTTAGCTGGCGAGAAAG__300__300__0__0	max_left=43	max_left_minus=43	max_left_plus=43	max_min_left=43	max_min_left_minus=43	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=498	max_right=225	max_right_minus=225	max_right_plus=100	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.039e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=ACTTCGGTACTTCACATTTTTACAAGAAATTTAGCTGGCGAGAAAG
JC	439	.	NC_012971	2517850	-1	NC_012971	2519296	1	0	alignment_overlap=3	coverage_minus=40	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_012971__2517850__-1__NC_012971__2519293__1__3____300__300__0__0	max_left=292	max_left_minus=292	max_left_plus=280	max_min_left=136	max_min_left_minus=136	max_min_left_plus=123	max_min_right=144	max_min_right_minus=144	max_min_right_plus=129	max_pos_hash_score=584	max_right=279	max_right_minus=245	max_right_plus=279	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.76	new_junction_read_count=72	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=70
JC	440	.	NC_012971	2517850	-1	NC_012971	2519624	1	-2	alignment_overlap=-2	coverage_minus=4	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.631e-01	junction_possible_overlap_registers=292	key=NC_012971__2517850__-1__NC_012971__2519624__1__-2__TT__300__300__0__0	max_left=157	max_left_minus=157	max_left_plus=157	max_min_left=121	max_min_left_minus=121	max_min_left_plus=121	max_min_right=94	max_min_right_minus=94	max_min_right_plus=94	max_pos_hash_score=586	max_right=229	max_right_minus=201	max_right_plus=229	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=1.631e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=TT
JC	441	.	NC_012971	2657768	-1	NC_012971	2658324	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.392e-02	junction_possible_overlap_registers=274	key=NC_012971__2657768__-1__NC_012971__2658304__1__20____300__300__0__0	max_left=27	max_left_minus=27	max_left_plus=27	max_min_left=2	max_min_left_minus=2	max_min_left_plus=0	max_min_right=14	max_min_right_minus=14	max_min_right_plus=14	max_pos_hash_score=550	max_right=275	max_right_minus=275	max_right_plus=14	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.392e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=3
JC	442	.	NC_012971	2736630	-1	NC_012971	2736997	1	0	alignment_overlap=29	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.782e-02	junction_possible_overlap_registers=265	key=NC_012971__2736630__-1__NC_012971__2736968__1__29____300__300__0__0	max_left=134	max_left_minus=134	max_left_plus=132	max_min_left=26	max_min_left_minus=26	max_min_left_plus=26	max_min_right=111	max_min_right_minus=110	max_min_right_plus=111	max_pos_hash_score=532	max_right=137	max_right_minus=137	max_right_plus=137	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.782e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=29	side_1_possible_overlap_registers=294	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=265	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=4
JC	443	.	NC_012971	2820976	-1	NC_012971	2822423	1	0	alignment_overlap=4	coverage_minus=47	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_012971__2820976__-1__NC_012971__2822419__1__4____300__300__0__0	max_left=295	max_left_minus=286	max_left_plus=295	max_min_left=144	max_min_left_minus=144	max_min_left_plus=142	max_min_right=145	max_min_right_minus=141	max_min_right_plus=145	max_pos_hash_score=582	max_right=292	max_right_minus=292	max_right_plus=263	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.01	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	444	.	NC_012971	2934978	-1	NC_012971	2935292	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.189e-02	junction_possible_overlap_registers=284	key=NC_012971__2934978__-1__NC_012971__2935282__1__10____300__300__0__0	max_left=243	max_left_minus=243	max_left_plus=222	max_min_left=27	max_min_left_minus=0	max_min_left_plus=27	max_min_right=114	max_min_right_minus=114	max_min_right_plus=68	max_pos_hash_score=570	max_right=115	max_right_minus=114	max_right_plus=115	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.189e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=4
JC	445	.	NC_012971	2969386	-1	NC_012971	2970057	1	0	alignment_overlap=2	coverage_minus=26	coverage_plus=32	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_012971__2969386__-1__NC_012971__2970055__1__2____300__300__0__0	max_left=294	max_left_minus=294	max_left_plus=290	max_min_left=148	max_min_left_minus=86	max_min_left_plus=148	max_min_right=145	max_min_right_minus=141	max_min_right_plus=145	max_pos_hash_score=586	max_right=297	max_right_minus=297	max_right_plus=276	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.62	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=58
JC	446	.	NC_012971	3018114	-1	NC_012971	3018228	1	0	alignment_overlap=39	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.600e-02	junction_possible_overlap_registers=255	key=NC_012971__3018114__-1__NC_012971__3018189__1__39____300__300__0__0	max_left=251	max_left_minus=178	max_left_plus=251	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=129	max_min_right_minus=104	max_min_right_plus=129	max_pos_hash_score=512	max_right=129	max_right_minus=104	max_right_plus=129	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.600e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=39	side_1_possible_overlap_registers=294	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=255	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=4
JC	447	.	NC_012971	3253254	-1	NC_012971	3253529	1	0	alignment_overlap=29	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.211e-02	junction_possible_overlap_registers=265	key=NC_012971__3253254__-1__NC_012971__3253500__1__29____300__300__0__0	max_left=254	max_left_minus=254	max_left_plus=168	max_min_left=120	max_min_left_minus=0	max_min_left_plus=120	max_min_right=102	max_min_right_minus=17	max_min_right_plus=102	max_pos_hash_score=532	max_right=188	max_right_minus=17	max_right_plus=188	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.211e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=29	side_1_possible_overlap_registers=294	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=265	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=4
JC	448	.	NC_012971	3365925	-1	NC_012971	4153660	-1	0	alignment_overlap=0	coverage_minus=80	coverage_plus=54	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_012971__3365925__-1__NC_012971__4153660__-1__0____300__300__1__0	max_left=294	max_left_minus=280	max_left_plus=294	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=147	max_min_right_minus=147	max_min_right_plus=135	max_pos_hash_score=590	max_right=295	max_right_minus=295	max_right_plus=294	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.39	new_junction_read_count=134	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=134
JC	449	.	NC_012971	3485246	-1	NC_012971	3628983	1	0	alignment_overlap=108	coverage_minus=35	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=6.782e-01	junction_possible_overlap_registers=186	key=NC_012971__3485246__-1__NC_012971__3628875__1__108____300__300__0__0	max_left=178	max_left_minus=164	max_left_plus=178	max_min_left=93	max_min_left_minus=93	max_min_left_plus=92	max_min_right=96	max_min_right_minus=96	max_min_right_plus=86	max_pos_hash_score=374	max_right=189	max_right_minus=189	max_right_plus=185	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.08	new_junction_read_count=66	polymorphism_frequency=6.782e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=108	side_1_possible_overlap_registers=294	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=186	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=65
JC	450	.	NC_012971	3510532	-1	NC_012971	3510764	1	0	alignment_overlap=58	coverage_minus=7	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.244e-01	junction_possible_overlap_registers=236	key=NC_012971__3510532__-1__NC_012971__3510706__1__58____300__300__0__0	max_left=207	max_left_minus=207	max_left_plus=183	max_min_left=100	max_min_left_minus=100	max_min_left_plus=27	max_min_right=85	max_min_right_minus=53	max_min_right_plus=85	max_pos_hash_score=474	max_right=230	max_right_minus=230	max_right_plus=125	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.14	new_junction_read_count=11	polymorphism_frequency=1.244e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=58	side_1_possible_overlap_registers=294	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=11
JC	451	.	NC_012971	3643247	-1	NC_012971	3643503	1	0	alignment_overlap=28	coverage_minus=4	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=8.955e-02	junction_possible_overlap_registers=266	key=NC_012971__3643247__-1__NC_012971__3643475__1__28____300__300__0__0	max_left=205	max_left_minus=205	max_left_plus=189	max_min_left=47	max_min_left_minus=46	max_min_left_plus=47	max_min_right=109	max_min_right_minus=109	max_min_right_plus=99	max_pos_hash_score=534	max_right=244	max_right_minus=216	max_right_plus=244	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=8.955e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=28	side_1_possible_overlap_registers=294	side_1_read_count=112	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=266	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=10
JC	452	.	NC_012971	3822340	-1	NC_012971	3823782	1	0	alignment_overlap=5	coverage_minus=33	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_012971__3822340__-1__NC_012971__3823777__1__5____300__300__0__0	max_left=294	max_left_minus=294	max_left_plus=292	max_min_left=145	max_min_left_minus=141	max_min_left_plus=145	max_min_right=127	max_min_right_minus=126	max_min_right_plus=127	max_pos_hash_score=580	max_right=294	max_right_minus=294	max_right_plus=283	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.86	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=77
JC	453	.	NC_012971	4159659	1	NC_012971	4449936	1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_012971__4159659__1__NC_012971__4449936__1__0____300__300__0__1	max_left=292	max_left_minus=292	max_left_plus=291	max_min_left=141	max_min_left_minus=141	max_min_left_plus=138	max_min_right=140	max_min_right_minus=140	max_min_right_plus=139	max_pos_hash_score=590	max_right=294	max_right_minus=289	max_right_plus=294	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.83	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=79
JC	454	.	NC_012971	4302990	1	NC_012971	4302986	-1	0	alignment_overlap=5	coverage_minus=27	coverage_plus=23	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_012971__4302990__1__NC_012971__4302991__-1__5____300__300__0__0	max_left=290	max_left_minus=288	max_left_plus=290	max_min_left=125	max_min_left_minus=125	max_min_left_plus=107	max_min_right=142	max_min_right_minus=142	max_min_right_plus=136	max_pos_hash_score=580	max_right=290	max_right_minus=290	max_right_plus=290	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.53	new_junction_read_count=50	polymorphism_frequency=9.903e-01	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=5	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=50
JC	455	.	NC_012971	4487090	-1	NC_012971	4487867	1	0	alignment_overlap=8	coverage_minus=84	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_012971__4487090__-1__NC_012971__4487859__1__8____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=278	max_min_left=130	max_min_left_minus=112	max_min_left_plus=130	max_min_right=142	max_min_right_minus=135	max_min_right_plus=142	max_pos_hash_score=574	max_right=288	max_right_minus=275	max_right_plus=288	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.47	new_junction_read_count=138	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=135
UN	456	.	NC_012971	15638	15640
UN	457	.	NC_012971	15642	16450
UN	458	.	NC_012971	16453	16454
UN	459	.	NC_012971	16456	16456
UN	460	.	NC_012971	16460	16462
UN	461	.	NC_012971	16465	16465
UN	462	.	NC_012971	23541	23787
UN	463	.	NC_012971	227286	228252
UN	464	.	NC_012971	228822	231557
UN	465	.	NC_012971	231562	231562
UN	466	.	NC_012971	231567	231568
UN	467	.	NC_012971	241529	241530
UN	468	.	NC_012971	241532	241743
UN	469	.	NC_012971	263072	263280
UN	470	.	NC_012971	263282	263283
UN	471	.	NC_012971	285477	285505
UN	472	.	NC_012971	285509	285509
UN	473	.	NC_012971	336220	336837
UN	474	.	NC_012971	336841	336841
UN	475	.	NC_012971	336848	336849
UN	476	.	NC_012971	350528	350738
UN	477	.	NC_012971	374012	374233
UN	478	.	NC_012971	426734	426734
UN	479	.	NC_012971	426736	426737
UN	480	.	NC_012971	426741	426741
UN	481	.	NC_012971	426743	426743
UN	482	.	NC_012971	426747	427553
UN	483	.	NC_012971	493251	495081
UN	484	.	NC_012971	495541	495576
UN	485	.	NC_012971	543912	549187
UN	486	.	NC_012971	550536	550552
UN	487	.	NC_012971	550998	597387
UN	488	.	NC_012971	612014	612014
UN	489	.	NC_012971	612023	612023
UN	490	.	NC_012971	612029	612029
UN	491	.	NC_012971	612032	612032
UN	492	.	NC_012971	612038	612038
UN	493	.	NC_012971	612040	612251
UN	494	.	NC_012971	642741	643635
UN	495	.	NC_012971	748650	753098
UN	496	.	NC_012971	754482	762848
UN	497	.	NC_012971	763279	767766
UN	498	.	NC_012971	767940	788002
UN	499	.	NC_012971	788005	788005
UN	500	.	NC_012971	788131	791133
UN	501	.	NC_012971	1098808	1098808
UN	502	.	NC_012971	1098810	1099509
UN	503	.	NC_012971	1099513	1099513
UN	504	.	NC_012971	1099515	1099515
UN	505	.	NC_012971	1181871	1181871
UN	506	.	NC_012971	1181873	1181874
UN	507	.	NC_012971	1181876	1182115
UN	508	.	NC_012971	1310991	1311203
UN	509	.	NC_012971	1400784	1400787
UN	510	.	NC_012971	1426862	1426862
UN	511	.	NC_012971	1426866	1427578
UN	512	.	NC_012971	1427581	1427581
UN	513	.	NC_012971	1444385	1444597
UN	514	.	NC_012971	1444599	1444599
UN	515	.	NC_012971	1482382	1484465
UN	516	.	NC_012971	1484467	1484468
UN	517	.	NC_012971	1484471	1484471
UN	518	.	NC_012971	1484474	1484474
UN	519	.	NC_012971	1484477	1484477
UN	520	.	NC_012971	1484481	1484482
UN	521	.	NC_012971	1484484	1484484
UN	522	.	NC_012971	1484486	1484486
UN	523	.	NC_012971	1484491	1484491
UN	524	.	NC_012971	1484958	1484978
UN	525	.	NC_012971	1484980	1484980
UN	526	.	NC_012971	1484982	1484982
UN	527	.	NC_012971	1484985	1484994
UN	528	.	NC_012971	1484996	1484997
UN	529	.	NC_012971	1485001	1485001
UN	530	.	NC_012971	1485006	1485006
UN	531	.	NC_012971	1485009	1485009
UN	532	.	NC_012971	1485012	1485012
UN	533	.	NC_012971	1586962	1587924
UN	534	.	NC_012971	1591546	1591549
UN	535	.	NC_012971	1824480	1825264
UN	536	.	NC_012971	1940689	1940690
UN	537	.	NC_012971	1940692	1940905
UN	538	.	NC_012971	1940909	1940909
UN	539	.	NC_012971	1940917	1940917
UN	540	.	NC_012971	1940920	1940920
UN	541	.	NC_012971	1940925	1940925
UN	542	.	NC_012971	2000412	2000626
UN	543	.	NC_012971	2000630	2000630
UN	544	.	NC_012971	2000633	2000634
UN	545	.	NC_012971	2068532	2069307
UN	546	.	NC_012971	2087015	2087219
UN	547	.	NC_012971	2087221	2087223
UN	548	.	NC_012971	2206676	2206895
UN	549	.	NC_012971	2276027	2276933
UN	550	.	NC_012971	2351364	2351601
UN	551	.	NC_012971	2517851	2519295
UN	552	.	NC_012971	2563408	2563618
UN	553	.	NC_012971	2592939	2597556
UN	554	.	NC_012971	2628114	2628206
UN	555	.	NC_012971	2718231	2719037
UN	556	.	NC_012971	2766116	2766116
UN	557	.	NC_012971	2766121	2766353
UN	558	.	NC_012971	2820977	2822422
UN	559	.	NC_012971	2828302	2828798
UN	560	.	NC_012971	2828803	2828803
UN	561	.	NC_012971	2828808	2828808
UN	562	.	NC_012971	2943535	2962977
UN	563	.	NC_012971	2969387	2970056
UN	564	.	NC_012971	3285203	3287272
UN	565	.	NC_012971	3287964	3287964
UN	566	.	NC_012971	3287972	3287984
UN	567	.	NC_012971	3288290	3289577
UN	568	.	NC_012971	3289579	3289580
UN	569	.	NC_012971	3289583	3289583
UN	570	.	NC_012971	3365422	3365648
UN	571	.	NC_012971	3484234	3484234
UN	572	.	NC_012971	3583063	3583063
UN	573	.	NC_012971	3583066	3583066
UN	574	.	NC_012971	3583068	3583961
UN	575	.	NC_012971	3628880	3628896
UN	576	.	NC_012971	3669900	3670137
UN	577	.	NC_012971	3822341	3823781
UN	578	.	NC_012971	3832178	3836792
UN	579	.	NC_012971	3942346	3942346
UN	580	.	NC_012971	3942350	3942351
UN	581	.	NC_012971	3942353	3942353
UN	582	.	NC_012971	3942355	3943785
UN	583	.	NC_012971	3944299	3944299
UN	584	.	NC_012971	3944316	3944318
UN	585	.	NC_012971	3944320	3944321
UN	586	.	NC_012971	3944326	3944328
UN	587	.	NC_012971	3944726	3946239
UN	588	.	NC_012971	3946793	3947305
UN	589	.	NC_012971	4074976	4076287
UN	590	.	NC_012971	4077091	4079721
UN	591	.	NC_012971	4116210	4116210
UN	592	.	NC_012971	4116224	4121003
UN	593	.	NC_012971	4121005	4121005
UN	594	.	NC_012971	4121038	4121038
UN	595	.	NC_012971	4153661	4159658
UN	596	.	NC_012971	4302987	4302989
UN	597	.	NC_012971	4433985	4434201
UN	598	.	NC_012971	4450211	4450211
UN	599	.	NC_012971	4450216	4450453
UN	600	.	NC_012971	4479305	4479528
UN	601	.	NC_012971	4487091	4487866