#=GENOME_DIFF	1.0
#=CREATED	19:59:07 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9022_S31_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9022_S31_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9022_S31_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9022_S31_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9022_S31_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	507523567
#=CONVERTED-READS	1717373
#=INPUT-BASES	507641035
#=INPUT-READS	1717776
#=MAPPED-BASES	473517314
#=MAPPED-READS	1603257
SNP	1	143	NC_000913	70659	A
SNP	2	144	NC_000913	100946	C
SNP	3	147	NC_000913	246747	T
DEL	4	412,428	NC_000913	257908	776
SNP	5	149	NC_000913	284535	G
SNP	6	150	NC_000913	313543	A
DEL	7	413,479	NC_000913	366181	93
SUB	8	159,160	NC_000913	480295	2	AA
SNP	9	235	NC_000913	690948	A
SNP	10	236	NC_000913	700038	A
SUB	11	237,238	NC_000913	809217	2	AG
SNP	12	239	NC_000913	822527	T
SNP	13	242	NC_000913	883396	T
MOB	14	481,482	NC_000913	886412	IS2	-1	5
SNP	15	244	NC_000913	968837	A
SNP	16	246	NC_000913	1040126	T
SNP	17	247	NC_000913	1061935	A
SNP	18	249	NC_000913	1098620	A
SUB	19	250,251	NC_000913	1111727	2	TT
SNP	20	252	NC_000913	1169836	G
SNP	21	253	NC_000913	1189980	G
SNP	22	254	NC_000913	1194922	A
SNP	23	255	NC_000913	1196220	T
SNP	24	256	NC_000913	1196232	T
SNP	25	257	NC_000913	1196245	C
SNP	26	258	NC_000913	1196247	G
MOB	27	505,506	NC_000913	1223636	IS2	-1	5
SNP	28	267	NC_000913	1253002	T
MOB	29	429,510	NC_000913	1301050	IS1	1	9
SNP	30	269	NC_000913	1301992	T
SNP	31	270	NC_000913	1306736	G
SNP	32	271	NC_000913	1310770	G
SNP	33	273	NC_000913	1337394	G
SNP	34	274	NC_000913	1357202	T
SNP	35	275	NC_000913	1358859	C
SNP	36	277	NC_000913	1441038	A
SUB	37	278,279,280,281	NC_000913	1497385	4	CAA
SNP	38	285	NC_000913	1584092	A
MOB	39	513,529	NC_000913	1590536	IS2	1	5
SNP	40	286	NC_000913	1629247	T
SNP	41	288	NC_000913	1643679	T
SNP	42	289	NC_000913	1652331	C
SNP	43	290	NC_000913	1667460	A
SNP	44	291	NC_000913	1682459	G
SNP	45	293	NC_000913	1748841	T
SNP	46	294	NC_000913	1767014	T
SUB	47	296,297	NC_000913	1848300	2	TT
SNP	48	298	NC_000913	1849629	C
SNP	49	299	NC_000913	1894839	C
DEL	50	415,531	NC_000913	1978503	776
SNP	51	300	NC_000913	2040433	A
SNP	52	301	NC_000913	2041278	A
SNP	53	302	NC_000913	2052885	A
MOB	54	532,534	NC_000913	2089842	IS1	1	9
SNP	55	303	NC_000913	2104024	T
DEL	56	304	NC_000913	2111259	1
SNP	57	305	NC_000913	2142598	A
SNP	58	306	NC_000913	2155197	A
DEL	59	308,309	NC_000913	2173363	2
SNP	60	310	NC_000913	2173448	T
MOB	61	535,536	NC_000913	2176844	IS4	-1	13
SNP	62	312	NC_000913	2233609	T
MOB	63	537,538	NC_000913	2238948	IS186	-1	6	del_end=2	del_start=1
SNP	64	313	NC_000913	2242247	T
SNP	65	314	NC_000913	2247134	C
SNP	66	316	NC_000913	2307733	T
SUB	67	317,318	NC_000913	2310878	2	TT
SNP	68	319	NC_000913	2404402	A
INS	69	320	NC_000913	2405840	T
SNP	70	321	NC_000913	2446592	A
DEL	71	324	NC_000913	2485636	1
SNP	72	325	NC_000913	2485638	A
SNP	73	326	NC_000913	2522369	A
DEL	74	416,542	NC_000913	2558699	6790
SNP	75	327	NC_000913	2587112	T
SNP	76	328	NC_000913	2668977	T
SNP	77	329	NC_000913	2702363	A
INS	78	546	NC_000913	2765463	TATGGCAC	repeat_length=8	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=TATGGCAC
SNP	79	332	NC_000913	2774947	A
SNP	80	333	NC_000913	2867311	T
SNP	81	334	NC_000913	2880635	C
SNP	82	336	NC_000913	2926772	A
SNP	83	337	NC_000913	2936855	G
SNP	84	338	NC_000913	2937210	T
SNP	85	339	NC_000913	2938548	T
DEL	86	341	NC_000913	3025601	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	87	343	NC_000913	3070858	G
DEL	88	344	NC_000913	3207549	1
SNP	89	345	NC_000913	3279276	G
SNP	90	346	NC_000913	3296481	A
SNP	91	347	NC_000913	3324965	T
SNP	92	348	NC_000913	3326537	A
SNP	93	349	NC_000913	3329743	T
SNP	94	350	NC_000913	3388041	G
SNP	95	351	NC_000913	3411689	T
SNP	96	352	NC_000913	3433900	T
SNP	97	353	NC_000913	3439485	T
SNP	98	354	NC_000913	3474272	T
SNP	99	355	NC_000913	3474424	G
SNP	100	356	NC_000913	3486502	T
SNP	101	357	NC_000913	3486538	C
SNP	102	358	NC_000913	3511466	T
SNP	103	359	NC_000913	3520507	A
SNP	104	360	NC_000913	3555047	C
SNP	105	361	NC_000913	3560362	A
INS	106	362	NC_000913	3560455	G
SNP	107	364	NC_000913	3647428	T
SNP	108	365	NC_000913	3707947	A
SNP	109	366	NC_000913	3719429	A
SNP	110	367	NC_000913	3725176	G
SUB	111	368,369	NC_000913	3729440	2	TT
SNP	112	370	NC_000913	3730560	T
SNP	113	373	NC_000913	3770539	T
DEL	114	374	NC_000913	3773173	1
SNP	115	375	NC_000913	3773176	T
INS	116	376	NC_000913	3815883	C
SNP	117	379	NC_000913	3925834	T
SNP	118	380	NC_000913	3926991	A
SUB	119	381,382	NC_000913	3966530	2	TT
SNP	120	384	NC_000913	4003502	T
MOB	121	572,573	NC_000913	4123617	IS2	-1	5
SNP	122	386	NC_000913	4133311	A
SNP	123	388	NC_000913	4150418	G
SNP	124	389	NC_000913	4193996	G
SNP	125	390	NC_000913	4217310	G
SNP	126	391	NC_000913	4223638	C
INS	127	395,396	NC_000913	4296381	GC
SNP	128	397	NC_000913	4325644	T
SNP	129	398	NC_000913	4331890	T
SNP	130	401	NC_000913	4437890	T
SNP	131	402	NC_000913	4473900	T
SNP	132	403	NC_000913	4475493	C
SNP	133	404	NC_000913	4476605	A
SNP	134	405	NC_000913	4489016	T
SNP	135	406	NC_000913	4510238	G
SNP	136	407	NC_000913	4532409	G
SNP	137	408	NC_000913	4546601	T
SNP	138	409	NC_000913	4620610	A
SNP	139	410	NC_000913	4636925	C
SNP	140	411	NC_000913	4638240	A
MOB	141	578,579	NC_000913	4640418	IS30	-1	2
RA	142	.	NC_000913	58065	0	C	A	bias_e_value=0.00839613	bias_p_value=1.80887e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.4	fisher_strand_p_value=7.43718e-11	frequency=3.786e-01	ks_quality_p_value=1	major_base=C	major_cov=27/37	major_frequency=6.214e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=3.786e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=27/37	total_cov=66/37
RA	143	.	NC_000913	70659	0	G	A	bias_e_value=3685060	bias_p_value=0.793912	consensus_score=373.5	fisher_strand_p_value=0.431193	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/62	major_frequency=9.908e-01	minor_base=G	minor_cov=1/0	new_cov=46/62	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=47/62
RA	144	.	NC_000913	100946	0	T	C	consensus_score=277.3	frequency=1	major_base=C	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	145	.	NC_000913	147802	0	C	A	bias_e_value=0.0206001	bias_p_value=4.4381e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.9	fisher_strand_p_value=1.89783e-10	frequency=3.564e-01	ks_quality_p_value=1	major_base=C	major_cov=27/38	major_frequency=6.436e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.564e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=27/38	total_cov=63/38
RA	146	.	NC_000913	240066	0	C	A	bias_e_value=14.8383	bias_p_value=3.19678e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.3	fisher_strand_p_value=1.94287e-07	frequency=2.844e-01	ks_quality_p_value=1	major_base=C	major_cov=41/37	major_frequency=7.156e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.844e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=41/37	total_cov=72/37
RA	147	.	NC_000913	246747	0	G	T	consensus_score=660.5	frequency=1	major_base=T	major_cov=92/94	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=92/94	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=92/94
RA	148	.	NC_000913	265217	0	C	A	bias_e_value=0.0237388	bias_p_value=5.11429e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.4	fisher_strand_p_value=2.20093e-10	frequency=3.017e-01	ks_quality_p_value=1	major_base=C	major_cov=35/46	major_frequency=6.983e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.017e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=35/46	total_cov=70/46
RA	149	.	NC_000913	284535	0	T	G	consensus_score=232.2	frequency=1	major_base=G	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	150	.	NC_000913	313543	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=528.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=77/67	major_frequency=9.931e-01	minor_base=G	minor_cov=1/0	new_cov=77/67	polymorphism_frequency=9.931e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=78/67
RA	151	.	NC_000913	366705	0	G	T	bias_e_value=0.959363	bias_p_value=2.06686e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=353.8	fisher_strand_p_value=1.06787e-08	frequency=2.069e-01	ks_quality_p_value=1	major_base=G	major_cov=77/61	major_frequency=7.931e-01	minor_base=T	minor_cov=2/34	new_cov=2/34	polymorphism_frequency=2.069e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=77/61	total_cov=79/95
RA	152	.	NC_000913	367573	0	G	A	bias_e_value=3910180	bias_p_value=0.842411	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.3	fisher_strand_p_value=0.495361	frequency=5.571e-01	ks_quality_p_value=0.997345	major_base=A	major_cov=40/38	major_frequency=5.571e-01	minor_base=G	minor_cov=36/26	new_cov=40/38	polymorphism_frequency=5.571e-01	polymorphism_score=188.0	prediction=polymorphism	ref_cov=36/26	total_cov=77/64
RA	153	.	NC_000913	377402	0	G	A	bias_e_value=2301930	bias_p_value=0.49593	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.2	fisher_strand_p_value=0.184267	frequency=2.817e-01	ks_quality_p_value=1	major_base=G	major_cov=31/20	major_frequency=7.183e-01	minor_base=A	minor_cov=8/12	new_cov=8/12	polymorphism_frequency=2.817e-01	polymorphism_score=51.4	prediction=polymorphism	ref_cov=31/20	total_cov=39/32
RA	154	.	NC_000913	377407	0	C	T	bias_e_value=928894	bias_p_value=0.200122	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.7	fisher_strand_p_value=0.108905	frequency=2.899e-01	ks_quality_p_value=0.460142	major_base=C	major_cov=31/18	major_frequency=7.101e-01	minor_base=T	minor_cov=8/12	new_cov=8/12	polymorphism_frequency=2.899e-01	polymorphism_score=55.1	prediction=polymorphism	ref_cov=31/18	total_cov=39/30
RA	155	.	NC_000913	377423	0	G	T	bias_e_value=965152	bias_p_value=0.207933	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.5	fisher_strand_p_value=0.0987806	frequency=2.500e-01	ks_quality_p_value=0.533951	major_base=G	major_cov=33/18	major_frequency=7.500e-01	minor_base=T	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=2.500e-01	polymorphism_score=38.9	prediction=polymorphism	ref_cov=33/18	total_cov=41/28
RA	156	.	NC_000913	377425	0	C	T	bias_e_value=1399320	bias_p_value=0.301471	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.2	fisher_strand_p_value=0.0937905	frequency=2.361e-01	ks_quality_p_value=0.93648	major_base=C	major_cov=36/19	major_frequency=7.639e-01	minor_base=T	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=2.361e-01	polymorphism_score=45.3	prediction=polymorphism	ref_cov=36/19	total_cov=43/29
RA	157	.	NC_000913	377431	1	.	T	bias_e_value=1387810	bias_p_value=0.298991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.2	fisher_strand_p_value=0.0937905	frequency=2.361e-01	ks_quality_p_value=0.925637	major_base=.	major_cov=36/19	major_frequency=7.639e-01	minor_base=T	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=2.361e-01	polymorphism_score=82.6	prediction=polymorphism	ref_cov=36/19	total_cov=43/29
RA	158	.	NC_000913	377432	0	C	G	bias_e_value=1429510	bias_p_value=0.307974	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.4	fisher_strand_p_value=0.101477	frequency=2.329e-01	ks_quality_p_value=0.89206	major_base=C	major_cov=36/20	major_frequency=7.671e-01	minor_base=G	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=2.329e-01	polymorphism_score=52.0	prediction=polymorphism	ref_cov=36/20	total_cov=43/30
RA	159	.	NC_000913	480295	0	G	A	consensus_score=476.6	frequency=1	major_base=A	major_cov=65/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/78
RA	160	.	NC_000913	480296	0	G	A	bias_e_value=2437470	bias_p_value=0.525129	consensus_score=475.7	fisher_strand_p_value=0.20202	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=63/79	major_frequency=9.861e-01	minor_base=G	minor_cov=2/0	new_cov=63/79	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=65/79
RA	161	.	NC_000913	571586	0	G	T	bias_e_value=0.00249553	bias_p_value=5.37639e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=284.1	fisher_strand_p_value=2.10131e-11	frequency=2.344e-01	ks_quality_p_value=1	major_base=G	major_cov=64/34	major_frequency=7.656e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.344e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=64/34	total_cov=64/64
RA	162	.	NC_000913	581115	0	C	A	bias_e_value=2631450	bias_p_value=0.566922	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.1	fisher_strand_p_value=0.230993	frequency=2.500e-01	ks_quality_p_value=0.992453	major_base=C	major_cov=37/29	major_frequency=7.500e-01	minor_base=A	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=2.500e-01	polymorphism_score=49.5	prediction=polymorphism	ref_cov=37/29	total_cov=46/42
RA	163	.	NC_000913	581121	0	A	C	bias_e_value=1582600	bias_p_value=0.340957	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.1	fisher_strand_p_value=0.105549	frequency=2.766e-01	ks_quality_p_value=0.991898	major_base=A	major_cov=38/30	major_frequency=7.234e-01	minor_base=C	minor_cov=9/17	new_cov=9/17	polymorphism_frequency=2.766e-01	polymorphism_score=75.2	prediction=polymorphism	ref_cov=38/30	total_cov=47/47
RA	164	.	NC_000913	581127	0	G	A	bias_e_value=2895340	bias_p_value=0.623773	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.1	fisher_strand_p_value=0.270193	frequency=2.959e-01	ks_quality_p_value=1	major_base=G	major_cov=38/31	major_frequency=7.041e-01	minor_base=A	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=2.959e-01	polymorphism_score=81.5	prediction=polymorphism	ref_cov=38/31	total_cov=50/48
RA	165	.	NC_000913	581130	0	G	A	bias_e_value=3071630	bias_p_value=0.661753	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.4	fisher_strand_p_value=0.380305	frequency=2.959e-01	ks_quality_p_value=0.790067	major_base=G	major_cov=36/33	major_frequency=7.041e-01	minor_base=A	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=2.959e-01	polymorphism_score=83.6	prediction=polymorphism	ref_cov=36/33	total_cov=48/50
RA	166	.	NC_000913	581139	0	C	A	bias_e_value=2866580	bias_p_value=0.617577	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.4	fisher_strand_p_value=0.663027	frequency=3.000e-01	ks_quality_p_value=0.400421	major_base=C	major_cov=35/35	major_frequency=7.000e-01	minor_base=A	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=3.000e-01	polymorphism_score=73.9	prediction=polymorphism	ref_cov=35/35	total_cov=48/52
RA	167	.	NC_000913	581141	0	G	A	bias_e_value=3254800	bias_p_value=0.701215	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.4	fisher_strand_p_value=0.384521	frequency=2.990e-01	ks_quality_p_value=0.870858	major_base=G	major_cov=35/33	major_frequency=7.010e-01	minor_base=A	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=2.990e-01	polymorphism_score=82.1	prediction=polymorphism	ref_cov=35/33	total_cov=47/52
RA	168	.	NC_000913	581145	0	C	T	bias_e_value=4336040	bias_p_value=0.934158	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.6	fisher_strand_p_value=0.659802	frequency=2.800e-01	ks_quality_p_value=1	major_base=C	major_cov=35/37	major_frequency=7.200e-01	minor_base=T	minor_cov=12/16	new_cov=12/16	polymorphism_frequency=2.800e-01	polymorphism_score=69.7	prediction=polymorphism	ref_cov=35/37	total_cov=47/53
RA	169	.	NC_000913	581154	0	A	G	bias_e_value=3428790	bias_p_value=0.7387	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.6	fisher_strand_p_value=0.523139	frequency=2.913e-01	ks_quality_p_value=0.70886	major_base=A	major_cov=37/36	major_frequency=7.087e-01	minor_base=G	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.913e-01	polymorphism_score=85.0	prediction=polymorphism	ref_cov=37/36	total_cov=50/53
RA	170	.	NC_000913	581175	0	T	C	bias_e_value=2701030	bias_p_value=0.581912	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.0	fisher_strand_p_value=0.512783	frequency=2.816e-01	ks_quality_p_value=0.46722	major_base=T	major_cov=37/37	major_frequency=7.184e-01	minor_base=C	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=2.816e-01	polymorphism_score=83.9	prediction=polymorphism	ref_cov=37/37	total_cov=49/54
RA	171	.	NC_000913	581178	0	T	G	bias_e_value=4281550	bias_p_value=0.92242	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.7	fisher_strand_p_value=0.658409	frequency=2.929e-01	ks_quality_p_value=0.961271	major_base=T	major_cov=34/36	major_frequency=7.071e-01	minor_base=G	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=2.929e-01	polymorphism_score=85.7	prediction=polymorphism	ref_cov=34/36	total_cov=47/53
RA	172	.	NC_000913	581196	0	C	G	bias_e_value=3028330	bias_p_value=0.652424	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.9	fisher_strand_p_value=0.380388	frequency=3.298e-01	ks_quality_p_value=0.769714	major_base=C	major_cov=34/29	major_frequency=6.702e-01	minor_base=G	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.298e-01	polymorphism_score=104.6	prediction=polymorphism	ref_cov=34/29	total_cov=47/48
RA	173	.	NC_000913	581199	0	A	C	bias_e_value=2786650	bias_p_value=0.600357	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.7	fisher_strand_p_value=0.27082	frequency=3.158e-01	ks_quality_p_value=0.933237	major_base=A	major_cov=35/30	major_frequency=6.842e-01	minor_base=C	minor_cov=12/18	new_cov=12/18	polymorphism_frequency=3.158e-01	polymorphism_score=92.0	prediction=polymorphism	ref_cov=35/30	total_cov=47/48
RA	174	.	NC_000913	581202	0	T	A	bias_e_value=2096930	bias_p_value=0.451763	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.6	fisher_strand_p_value=0.380388	frequency=3.333e-01	ks_quality_p_value=0.418546	major_base=T	major_cov=33/29	major_frequency=6.667e-01	minor_base=A	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.333e-01	polymorphism_score=121.6	prediction=polymorphism	ref_cov=33/29	total_cov=46/49
RA	175	.	NC_000913	581206	0	A	G	bias_e_value=3102580	bias_p_value=0.668422	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.6	fisher_strand_p_value=0.392355	frequency=3.263e-01	ks_quality_p_value=0.78005	major_base=A	major_cov=33/31	major_frequency=6.737e-01	minor_base=G	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.263e-01	polymorphism_score=89.5	prediction=polymorphism	ref_cov=33/31	total_cov=46/49
RA	176	.	NC_000913	581208	0	T	A	bias_e_value=2917980	bias_p_value=0.628651	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.3	fisher_strand_p_value=0.392355	frequency=3.263e-01	ks_quality_p_value=0.698198	major_base=T	major_cov=33/31	major_frequency=6.737e-01	minor_base=A	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.263e-01	polymorphism_score=120.7	prediction=polymorphism	ref_cov=33/31	total_cov=46/49
RA	177	.	NC_000913	581214	0	T	C	bias_e_value=3111600	bias_p_value=0.670365	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.3	fisher_strand_p_value=0.511533	frequency=3.298e-01	ks_quality_p_value=0.601526	major_base=T	major_cov=32/31	major_frequency=6.702e-01	minor_base=C	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.298e-01	polymorphism_score=91.1	prediction=polymorphism	ref_cov=32/31	total_cov=45/49
RA	178	.	NC_000913	581220	0	C	T	bias_e_value=3348250	bias_p_value=0.721349	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.0	fisher_strand_p_value=0.511533	frequency=3.298e-01	ks_quality_p_value=0.691537	major_base=C	major_cov=32/31	major_frequency=6.702e-01	minor_base=T	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.298e-01	polymorphism_score=90.2	prediction=polymorphism	ref_cov=32/31	total_cov=45/49
RA	179	.	NC_000913	581223	0	C	T	bias_e_value=3690700	bias_p_value=0.795126	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.1	fisher_strand_p_value=0.511533	frequency=3.298e-01	ks_quality_p_value=0.845767	major_base=C	major_cov=32/31	major_frequency=6.702e-01	minor_base=T	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.298e-01	polymorphism_score=93.1	prediction=polymorphism	ref_cov=32/31	total_cov=45/49
RA	180	.	NC_000913	581226	0	G	A	bias_e_value=3334500	bias_p_value=0.718386	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.7	fisher_strand_p_value=0.511533	frequency=3.298e-01	ks_quality_p_value=0.685985	major_base=G	major_cov=32/31	major_frequency=6.702e-01	minor_base=A	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.298e-01	polymorphism_score=94.1	prediction=polymorphism	ref_cov=32/31	total_cov=45/49
RA	181	.	NC_000913	581227	0	A	G	bias_e_value=3373890	bias_p_value=0.726873	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.8	fisher_strand_p_value=0.513521	frequency=3.229e-01	ks_quality_p_value=0.699288	major_base=A	major_cov=33/32	major_frequency=6.771e-01	minor_base=G	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.229e-01	polymorphism_score=92.0	prediction=polymorphism	ref_cov=33/32	total_cov=47/50
RA	182	.	NC_000913	581229	0	C	T	bias_e_value=4201810	bias_p_value=0.905241	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.6	fisher_strand_p_value=0.657191	frequency=3.297e-01	ks_quality_p_value=0.909255	major_base=C	major_cov=28/33	major_frequency=6.703e-01	minor_base=T	minor_cov=12/18	new_cov=12/18	polymorphism_frequency=3.297e-01	polymorphism_score=89.9	prediction=polymorphism	ref_cov=28/33	total_cov=40/51
RA	183	.	NC_000913	581232	0	C	T	bias_e_value=4257240	bias_p_value=0.917181	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.0	fisher_strand_p_value=0.825333	frequency=3.370e-01	ks_quality_p_value=0.753243	major_base=C	major_cov=28/33	major_frequency=6.630e-01	minor_base=T	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.370e-01	polymorphism_score=92.0	prediction=polymorphism	ref_cov=28/33	total_cov=41/51
RA	184	.	NC_000913	581241	0	G	T	bias_e_value=4375090	bias_p_value=0.942572	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.0	fisher_strand_p_value=0.68086	frequency=3.776e-01	ks_quality_p_value=0.999964	major_base=G	major_cov=31/30	major_frequency=6.224e-01	minor_base=T	minor_cov=17/20	new_cov=17/20	polymorphism_frequency=3.776e-01	polymorphism_score=100.8	prediction=polymorphism	ref_cov=31/30	total_cov=48/50
RA	185	.	NC_000913	581250	0	T	C	bias_e_value=4217870	bias_p_value=0.908701	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.6	fisher_strand_p_value=0.833216	frequency=3.789e-01	ks_quality_p_value=0.72532	major_base=T	major_cov=30/29	major_frequency=6.211e-01	minor_base=C	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=3.789e-01	polymorphism_score=111.5	prediction=polymorphism	ref_cov=30/29	total_cov=47/48
RA	186	.	NC_000913	581253	0	T	C	bias_e_value=4573170	bias_p_value=0.985247	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.5	fisher_strand_p_value=0.833216	frequency=3.789e-01	ks_quality_p_value=1	major_base=T	major_cov=30/29	major_frequency=6.211e-01	minor_base=C	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=3.789e-01	polymorphism_score=89.8	prediction=polymorphism	ref_cov=30/29	total_cov=47/48
RA	187	.	NC_000913	581259	0	A	G	bias_e_value=4171980	bias_p_value=0.898814	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.7	fisher_strand_p_value=0.835233	frequency=3.750e-01	ks_quality_p_value=0.700784	major_base=A	major_cov=30/30	major_frequency=6.250e-01	minor_base=G	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=3.750e-01	polymorphism_score=108.3	prediction=polymorphism	ref_cov=30/30	total_cov=47/50
RA	188	.	NC_000913	581275	0	G	A	bias_e_value=4123620	bias_p_value=0.888395	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.9	fisher_strand_p_value=0.694121	frequency=4.019e-01	ks_quality_p_value=0.816051	major_base=G	major_cov=28/36	major_frequency=5.981e-01	minor_base=A	minor_cov=17/26	new_cov=17/26	polymorphism_frequency=4.019e-01	polymorphism_score=133.0	prediction=polymorphism	ref_cov=28/36	total_cov=45/62
RA	189	.	NC_000913	581286	0	G	C	bias_e_value=2569340	bias_p_value=0.55354	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.9	fisher_strand_p_value=0.220285	frequency=3.714e-01	ks_quality_p_value=1	major_base=G	major_cov=31/35	major_frequency=6.286e-01	minor_base=C	minor_cov=13/26	new_cov=13/26	polymorphism_frequency=3.714e-01	polymorphism_score=121.3	prediction=polymorphism	ref_cov=31/35	total_cov=48/62
RA	190	.	NC_000913	581289	0	A	G	bias_e_value=4097460	bias_p_value=0.882758	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.2	fisher_strand_p_value=0.556671	frequency=3.909e-01	ks_quality_p_value=1	major_base=A	major_cov=31/36	major_frequency=6.091e-01	minor_base=G	minor_cov=17/26	new_cov=17/26	polymorphism_frequency=3.909e-01	polymorphism_score=110.0	prediction=polymorphism	ref_cov=31/36	total_cov=48/62
RA	191	.	NC_000913	581290	0	C	A	bias_e_value=3849660	bias_p_value=0.829373	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.9	fisher_strand_p_value=0.553098	frequency=3.761e-01	ks_quality_p_value=0.860656	major_base=C	major_cov=31/37	major_frequency=6.239e-01	minor_base=A	minor_cov=16/25	new_cov=16/25	polymorphism_frequency=3.761e-01	polymorphism_score=111.4	prediction=polymorphism	ref_cov=31/37	total_cov=48/63
RA	192	.	NC_000913	581291	0	G	A	bias_e_value=4394650	bias_p_value=0.946786	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.0	fisher_strand_p_value=0.692036	frequency=3.853e-01	ks_quality_p_value=1	major_base=G	major_cov=31/36	major_frequency=6.147e-01	minor_base=A	minor_cov=17/25	new_cov=17/25	polymorphism_frequency=3.853e-01	polymorphism_score=110.0	prediction=polymorphism	ref_cov=31/36	total_cov=48/63
RA	193	.	NC_000913	581295	0	T	C	bias_e_value=4372670	bias_p_value=0.942049	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.4	fisher_strand_p_value=0.693555	frequency=3.909e-01	ks_quality_p_value=0.979705	major_base=T	major_cov=30/37	major_frequency=6.091e-01	minor_base=C	minor_cov=17/26	new_cov=17/26	polymorphism_frequency=3.909e-01	polymorphism_score=129.9	prediction=polymorphism	ref_cov=30/37	total_cov=47/63
RA	194	.	NC_000913	581301	0	C	T	bias_e_value=4079430	bias_p_value=0.878876	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.9	fisher_strand_p_value=0.550109	frequency=3.889e-01	ks_quality_p_value=1	major_base=C	major_cov=30/36	major_frequency=6.111e-01	minor_base=T	minor_cov=16/26	new_cov=16/26	polymorphism_frequency=3.889e-01	polymorphism_score=123.5	prediction=polymorphism	ref_cov=30/36	total_cov=46/62
RA	195	.	NC_000913	581322	0	C	T	bias_e_value=1982320	bias_p_value=0.427071	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.7	fisher_strand_p_value=0.465187	frequency=4.454e-01	ks_quality_p_value=0.314015	major_base=C	major_cov=32/34	major_frequency=5.546e-01	minor_base=T	minor_cov=22/31	new_cov=22/31	polymorphism_frequency=4.454e-01	polymorphism_score=167.8	prediction=polymorphism	ref_cov=32/34	total_cov=54/65
RA	196	.	NC_000913	581335	0	C	A	bias_e_value=3420610	bias_p_value=0.736938	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.5	fisher_strand_p_value=0.371891	frequency=4.488e-01	ks_quality_p_value=0.992388	major_base=C	major_cov=36/34	major_frequency=5.512e-01	minor_base=A	minor_cov=24/33	new_cov=24/33	polymorphism_frequency=4.488e-01	polymorphism_score=160.2	prediction=polymorphism	ref_cov=36/34	total_cov=60/67
RA	197	.	NC_000913	581337	0	G	A	bias_e_value=2718080	bias_p_value=0.585585	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.7	fisher_strand_p_value=0.284479	frequency=4.488e-01	ks_quality_p_value=0.851251	major_base=G	major_cov=37/33	major_frequency=5.512e-01	minor_base=A	minor_cov=24/33	new_cov=24/33	polymorphism_frequency=4.488e-01	polymorphism_score=184.4	prediction=polymorphism	ref_cov=37/33	total_cov=61/66
RA	198	.	NC_000913	581380	0	C	G	bias_e_value=3799340	bias_p_value=0.818532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.9	fisher_strand_p_value=0.477176	frequency=4.297e-01	ks_quality_p_value=0.967598	major_base=C	major_cov=37/36	major_frequency=5.703e-01	minor_base=G	minor_cov=24/31	new_cov=24/31	polymorphism_frequency=4.297e-01	polymorphism_score=186.1	prediction=polymorphism	ref_cov=37/36	total_cov=61/67
RA	199	.	NC_000913	581381	0	A	G	bias_e_value=3775860	bias_p_value=0.813472	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.2	fisher_strand_p_value=0.477176	frequency=4.297e-01	ks_quality_p_value=0.954002	major_base=A	major_cov=37/36	major_frequency=5.703e-01	minor_base=G	minor_cov=24/31	new_cov=24/31	polymorphism_frequency=4.297e-01	polymorphism_score=167.9	prediction=polymorphism	ref_cov=37/36	total_cov=61/67
RA	200	.	NC_000913	581388	0	G	A	bias_e_value=3065840	bias_p_value=0.660506	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.1	fisher_strand_p_value=0.524257	frequency=3.107e-01	ks_quality_p_value=0.571153	major_base=G	major_cov=37/34	major_frequency=6.893e-01	minor_base=A	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.107e-01	polymorphism_score=95.9	prediction=polymorphism	ref_cov=37/34	total_cov=51/54
RA	201	.	NC_000913	581392	0	T	C	bias_e_value=3956080	bias_p_value=0.8523	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.6	fisher_strand_p_value=0.675063	frequency=3.137e-01	ks_quality_p_value=0.753058	major_base=T	major_cov=34/36	major_frequency=6.863e-01	minor_base=C	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.137e-01	polymorphism_score=90.7	prediction=polymorphism	ref_cov=34/36	total_cov=48/54
RA	202	.	NC_000913	581394	0	T	C	bias_e_value=4364680	bias_p_value=0.940329	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.7	fisher_strand_p_value=0.675063	frequency=3.137e-01	ks_quality_p_value=1	major_base=T	major_cov=34/36	major_frequency=6.863e-01	minor_base=C	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.137e-01	polymorphism_score=87.0	prediction=polymorphism	ref_cov=34/36	total_cov=48/54
RA	203	.	NC_000913	581397	0	T	C	bias_e_value=4558260	bias_p_value=0.982034	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.2	fisher_strand_p_value=0.832386	frequency=3.077e-01	ks_quality_p_value=0.980953	major_base=T	major_cov=34/38	major_frequency=6.923e-01	minor_base=C	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.077e-01	polymorphism_score=89.9	prediction=polymorphism	ref_cov=34/38	total_cov=48/56
RA	204	.	NC_000913	581398	0	C	G	bias_e_value=4602460	bias_p_value=0.991557	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.2	fisher_strand_p_value=1	frequency=3.010e-01	ks_quality_p_value=0.872903	major_base=C	major_cov=34/38	major_frequency=6.990e-01	minor_base=G	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=3.010e-01	polymorphism_score=101.7	prediction=polymorphism	ref_cov=34/38	total_cov=48/55
RA	205	.	NC_000913	581404	0	C	G	bias_e_value=4364100	bias_p_value=0.940204	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.2	fisher_strand_p_value=1	frequency=3.137e-01	ks_quality_p_value=0.674747	major_base=C	major_cov=32/38	major_frequency=6.863e-01	minor_base=G	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.137e-01	polymorphism_score=104.4	prediction=polymorphism	ref_cov=32/38	total_cov=46/56
RA	206	.	NC_000913	581407	0	G	T	bias_e_value=4335800	bias_p_value=0.934107	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.2	fisher_strand_p_value=1	frequency=3.137e-01	ks_quality_p_value=0.659679	major_base=G	major_cov=32/38	major_frequency=6.863e-01	minor_base=T	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.137e-01	polymorphism_score=84.2	prediction=polymorphism	ref_cov=32/38	total_cov=46/56
RA	207	.	NC_000913	581410	0	T	A	bias_e_value=4639680	bias_p_value=0.999575	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.8	fisher_strand_p_value=1	frequency=3.137e-01	ks_quality_p_value=0.970983	major_base=T	major_cov=32/38	major_frequency=6.863e-01	minor_base=A	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.137e-01	polymorphism_score=125.1	prediction=polymorphism	ref_cov=32/38	total_cov=46/56
RA	208	.	NC_000913	581412	0	G	T	bias_e_value=4504630	bias_p_value=0.970479	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.4	fisher_strand_p_value=0.833162	frequency=3.168e-01	ks_quality_p_value=0.920672	major_base=G	major_cov=32/37	major_frequency=6.832e-01	minor_base=T	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.168e-01	polymorphism_score=82.9	prediction=polymorphism	ref_cov=32/37	total_cov=46/56
RA	209	.	NC_000913	581413	0	C	T	bias_e_value=4572200	bias_p_value=0.985037	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.9	fisher_strand_p_value=0.832072	frequency=3.235e-01	ks_quality_p_value=1	major_base=C	major_cov=32/37	major_frequency=6.765e-01	minor_base=T	minor_cov=14/19	new_cov=14/19	polymorphism_frequency=3.235e-01	polymorphism_score=90.4	prediction=polymorphism	ref_cov=32/37	total_cov=46/56
RA	210	.	NC_000913	581416	0	A	G	bias_e_value=4627340	bias_p_value=0.996916	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.2	fisher_strand_p_value=1	frequency=3.137e-01	ks_quality_p_value=0.922496	major_base=A	major_cov=32/38	major_frequency=6.863e-01	minor_base=G	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.137e-01	polymorphism_score=91.6	prediction=polymorphism	ref_cov=32/38	total_cov=46/56
RA	211	.	NC_000913	581421	0	T	A	bias_e_value=4360320	bias_p_value=0.93939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.4	fisher_strand_p_value=0.672684	frequency=3.019e-01	ks_quality_p_value=1	major_base=T	major_cov=37/37	major_frequency=6.981e-01	minor_base=A	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.019e-01	polymorphism_score=121.5	prediction=polymorphism	ref_cov=37/37	total_cov=51/55
RA	212	.	NC_000913	581423	0	A	C	bias_e_value=3908780	bias_p_value=0.842109	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.6	fisher_strand_p_value=0.671459	frequency=3.077e-01	ks_quality_p_value=0.735141	major_base=A	major_cov=36/36	major_frequency=6.923e-01	minor_base=C	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.077e-01	polymorphism_score=100.5	prediction=polymorphism	ref_cov=36/36	total_cov=50/54
RA	213	.	NC_000913	581425	0	G	A	bias_e_value=4352070	bias_p_value=0.937612	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.2	fisher_strand_p_value=0.671459	frequency=3.077e-01	ks_quality_p_value=0.995204	major_base=G	major_cov=36/36	major_frequency=6.923e-01	minor_base=A	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.077e-01	polymorphism_score=94.8	prediction=polymorphism	ref_cov=36/36	total_cov=50/54
RA	214	.	NC_000913	581428	0	G	T	bias_e_value=3893230	bias_p_value=0.838759	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.4	fisher_strand_p_value=0.522434	frequency=3.168e-01	ks_quality_p_value=0.935822	major_base=G	major_cov=36/33	major_frequency=6.832e-01	minor_base=T	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.168e-01	polymorphism_score=81.5	prediction=polymorphism	ref_cov=36/33	total_cov=50/51
RA	215	.	NC_000913	581434	0	A	G	bias_e_value=3992420	bias_p_value=0.860128	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.7	fisher_strand_p_value=0.520132	frequency=3.039e-01	ks_quality_p_value=1	major_base=A	major_cov=38/33	major_frequency=6.961e-01	minor_base=G	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=3.039e-01	polymorphism_score=83.4	prediction=polymorphism	ref_cov=38/33	total_cov=52/50
RA	216	.	NC_000913	581437	0	G	A	bias_e_value=3474450	bias_p_value=0.748537	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.3	fisher_strand_p_value=0.394455	frequency=3.107e-01	ks_quality_p_value=0.965599	major_base=G	major_cov=39/32	major_frequency=6.893e-01	minor_base=A	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.107e-01	polymorphism_score=93.8	prediction=polymorphism	ref_cov=39/32	total_cov=53/50
RA	217	.	NC_000913	581440	0	C	G	bias_e_value=3337800	bias_p_value=0.719097	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.5	fisher_strand_p_value=0.395545	frequency=3.039e-01	ks_quality_p_value=0.888859	major_base=C	major_cov=39/32	major_frequency=6.961e-01	minor_base=G	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=3.039e-01	polymorphism_score=100.8	prediction=polymorphism	ref_cov=39/32	total_cov=53/50
RA	218	.	NC_000913	581443	0	C	G	bias_e_value=1709020	bias_p_value=0.368193	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.4	fisher_strand_p_value=0.394455	frequency=3.107e-01	ks_quality_p_value=0.296801	major_base=C	major_cov=39/32	major_frequency=6.893e-01	minor_base=G	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.107e-01	polymorphism_score=106.6	prediction=polymorphism	ref_cov=39/32	total_cov=53/50
RA	219	.	NC_000913	581455	0	G	A	bias_e_value=3500970	bias_p_value=0.75425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.4	fisher_strand_p_value=0.396513	frequency=3.048e-01	ks_quality_p_value=0.975636	major_base=G	major_cov=40/33	major_frequency=6.952e-01	minor_base=A	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.048e-01	polymorphism_score=94.5	prediction=polymorphism	ref_cov=40/33	total_cov=54/51
RA	220	.	NC_000913	581458	0	T	C	bias_e_value=3034710	bias_p_value=0.653801	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.1	fisher_strand_p_value=0.29632	frequency=3.019e-01	ks_quality_p_value=0.991874	major_base=T	major_cov=41/33	major_frequency=6.981e-01	minor_base=C	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.019e-01	polymorphism_score=91.5	prediction=polymorphism	ref_cov=41/33	total_cov=55/51
RA	221	.	NC_000913	581460	0	C	A	bias_e_value=2950320	bias_p_value=0.635619	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.2	fisher_strand_p_value=0.29632	frequency=3.019e-01	ks_quality_p_value=0.942772	major_base=C	major_cov=41/33	major_frequency=6.981e-01	minor_base=A	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.019e-01	polymorphism_score=83.5	prediction=polymorphism	ref_cov=41/33	total_cov=55/51
RA	222	.	NC_000913	581476	0	G	C	bias_e_value=1250380	bias_p_value=0.269383	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.6	fisher_strand_p_value=0.19675	frequency=3.069e-01	ks_quality_p_value=0.381416	major_base=G	major_cov=40/30	major_frequency=6.931e-01	minor_base=C	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.069e-01	polymorphism_score=101.3	prediction=polymorphism	ref_cov=40/30	total_cov=53/51
RA	223	.	NC_000913	581482	0	A	G	bias_e_value=3496360	bias_p_value=0.753257	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.5	fisher_strand_p_value=0.385863	frequency=2.913e-01	ks_quality_p_value=0.999858	major_base=A	major_cov=40/33	major_frequency=7.087e-01	minor_base=G	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.913e-01	polymorphism_score=82.6	prediction=polymorphism	ref_cov=40/33	total_cov=53/50
RA	224	.	NC_000913	581485	0	C	G	bias_e_value=3500660	bias_p_value=0.754184	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.7	fisher_strand_p_value=0.389412	frequency=2.970e-01	ks_quality_p_value=0.993246	major_base=C	major_cov=38/33	major_frequency=7.030e-01	minor_base=G	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.970e-01	polymorphism_score=95.6	prediction=polymorphism	ref_cov=38/33	total_cov=52/50
RA	225	.	NC_000913	581488	0	A	C	bias_e_value=3495250	bias_p_value=0.753019	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.3	fisher_strand_p_value=0.386693	frequency=2.941e-01	ks_quality_p_value=0.997063	major_base=A	major_cov=39/33	major_frequency=7.059e-01	minor_base=C	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.941e-01	polymorphism_score=86.9	prediction=polymorphism	ref_cov=39/33	total_cov=52/50
RA	226	.	NC_000913	581512	0	A	G	bias_e_value=2371570	bias_p_value=0.510932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.8	fisher_strand_p_value=0.198836	frequency=2.736e-01	ks_quality_p_value=0.971976	major_base=A	major_cov=43/34	major_frequency=7.264e-01	minor_base=G	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=2.736e-01	polymorphism_score=82.4	prediction=polymorphism	ref_cov=43/34	total_cov=55/51
RA	227	.	NC_000913	581513	0	C	T	bias_e_value=2158110	bias_p_value=0.464945	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.2	fisher_strand_p_value=0.198836	frequency=2.736e-01	ks_quality_p_value=0.837233	major_base=C	major_cov=43/34	major_frequency=7.264e-01	minor_base=T	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=2.736e-01	polymorphism_score=85.0	prediction=polymorphism	ref_cov=43/34	total_cov=55/51
RA	228	.	NC_000913	581518	0	C	G	bias_e_value=2895970	bias_p_value=0.623909	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.8	fisher_strand_p_value=0.27809	frequency=2.736e-01	ks_quality_p_value=0.971976	major_base=C	major_cov=42/35	major_frequency=7.264e-01	minor_base=G	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=2.736e-01	polymorphism_score=93.3	prediction=polymorphism	ref_cov=42/35	total_cov=54/52
RA	229	.	NC_000913	581524	0	G	A	bias_e_value=1626360	bias_p_value=0.350383	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.2	fisher_strand_p_value=0.109572	frequency=2.404e-01	ks_quality_p_value=0.993933	major_base=G	major_cov=44/35	major_frequency=7.596e-01	minor_base=A	minor_cov=9/16	new_cov=9/16	polymorphism_frequency=2.404e-01	polymorphism_score=69.6	prediction=polymorphism	ref_cov=44/35	total_cov=53/51
RA	230	.	NC_000913	581527	0	G	C	bias_e_value=894222	bias_p_value=0.192652	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.8	fisher_strand_p_value=0.0616422	frequency=2.577e-01	ks_quality_p_value=0.772802	major_base=G	major_cov=43/29	major_frequency=7.423e-01	minor_base=C	minor_cov=9/16	new_cov=9/16	polymorphism_frequency=2.577e-01	polymorphism_score=78.3	prediction=polymorphism	ref_cov=43/29	total_cov=52/47
RA	231	.	NC_000913	581530	0	C	G	bias_e_value=1252070	bias_p_value=0.269746	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.9	fisher_strand_p_value=0.10589	frequency=2.551e-01	ks_quality_p_value=0.710017	major_base=C	major_cov=41/32	major_frequency=7.449e-01	minor_base=G	minor_cov=9/16	new_cov=9/16	polymorphism_frequency=2.551e-01	polymorphism_score=82.7	prediction=polymorphism	ref_cov=41/32	total_cov=50/48
RA	232	.	NC_000913	581548	0	C	T	bias_e_value=3075330	bias_p_value=0.662551	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.5	fisher_strand_p_value=0.329595	frequency=2.340e-01	ks_quality_p_value=0.913641	major_base=C	major_cov=40/32	major_frequency=7.660e-01	minor_base=T	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=2.340e-01	polymorphism_score=60.1	prediction=polymorphism	ref_cov=40/32	total_cov=49/45
RA	233	.	NC_000913	581550	0	G	A	bias_e_value=3222010	bias_p_value=0.694151	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.0	fisher_strand_p_value=0.329595	frequency=2.340e-01	ks_quality_p_value=0.996567	major_base=G	major_cov=40/32	major_frequency=7.660e-01	minor_base=A	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=2.340e-01	polymorphism_score=60.1	prediction=polymorphism	ref_cov=40/32	total_cov=49/45
RA	234	.	NC_000913	581554	0	C	T	bias_e_value=3304710	bias_p_value=0.711969	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.4	fisher_strand_p_value=0.344827	frequency=2.136e-01	ks_quality_p_value=1	major_base=C	major_cov=43/38	major_frequency=7.864e-01	minor_base=T	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=2.136e-01	polymorphism_score=59.1	prediction=polymorphism	ref_cov=43/38	total_cov=52/51
RA	235	.	NC_000913	690948	0	G	A	bias_e_value=4640580	bias_p_value=0.999769	consensus_score=303.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.978581	major_base=A	major_cov=35/51	major_frequency=9.885e-01	minor_base=G	minor_cov=0/1	new_cov=35/51	polymorphism_frequency=9.885e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=35/52
RA	236	.	NC_000913	700038	0	G	A	consensus_score=330.0	frequency=1	major_base=A	major_cov=51/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/41
RA	237	.	NC_000913	809217	0	C	A	consensus_score=264.3	frequency=1	major_base=A	major_cov=54/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/26
RA	238	.	NC_000913	809218	0	A	G	consensus_score=296.8	frequency=1	major_base=G	major_cov=54/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/26
RA	239	.	NC_000913	822527	0	C	T	bias_e_value=4641540	bias_p_value=0.999977	consensus_score=266.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993183	major_base=T	major_cov=40/45	major_frequency=9.884e-01	minor_base=C	minor_cov=0/1	new_cov=40/45	polymorphism_frequency=9.884e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=40/46
RA	240	.	NC_000913	847955	0	G	A	bias_e_value=0.00108478	bias_p_value=2.33706e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.4	fisher_strand_p_value=8.835e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=64/41	major_frequency=7.500e-01	minor_base=A	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.500e-01	polymorphism_score=35.6	prediction=polymorphism	ref_cov=64/41	total_cov=64/77
RA	241	.	NC_000913	848028	0	G	T	bias_e_value=0.00113742	bias_p_value=2.45047e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=284.3	fisher_strand_p_value=9.281e-12	frequency=2.574e-01	ks_quality_p_value=1	major_base=G	major_cov=61/40	major_frequency=7.426e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.574e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=61/40	total_cov=61/75
RA	242	.	NC_000913	883396	0	C	T	consensus_score=424.8	frequency=1	major_base=T	major_cov=58/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/65
RA	243	.	NC_000913	952453	0	G	T	bias_e_value=2.7416	bias_p_value=5.90653e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.6	fisher_strand_p_value=3.23717e-08	frequency=2.828e-01	ks_quality_p_value=1	major_base=G	major_cov=39/32	major_frequency=7.172e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.828e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=39/32	total_cov=39/60
RA	244	.	NC_000913	968837	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=199.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=37/25	major_frequency=9.841e-01	minor_base=C	minor_cov=1/0	new_cov=37/25	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	245	.	NC_000913	1001094	0	G	T	bias_e_value=0.102516	bias_p_value=2.20861e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.6	fisher_strand_p_value=1.01752e-09	frequency=3.058e-01	ks_quality_p_value=1	major_base=G	major_cov=44/40	major_frequency=6.942e-01	minor_base=T	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.058e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=44/40	total_cov=44/77
RA	246	.	NC_000913	1040126	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=277.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/41	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=39/41	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=39/42
RA	247	.	NC_000913	1061935	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=250.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/38	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=40/38	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=42/38
RA	248	.	NC_000913	1097118	0	C	A	bias_e_value=1796050	bias_p_value=0.386943	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.4	fisher_strand_p_value=0.128281	frequency=3.125e-01	ks_quality_p_value=0.981982	major_base=C	major_cov=8/14	major_frequency=6.875e-01	minor_base=A	minor_cov=7/3	new_cov=7/3	polymorphism_frequency=3.125e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=8/14	total_cov=15/17
RA	249	.	NC_000913	1098620	0	T	A	consensus_score=263.5	frequency=1	major_base=A	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	250	.	NC_000913	1111727	0	C	T	bias_e_value=1712890	bias_p_value=0.369026	consensus_score=309.5	fisher_strand_p_value=0.117463	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/46	major_frequency=9.596e-01	minor_base=G	minor_cov=0/4	new_cov=49/46	polymorphism_frequency=9.596e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=0/0	total_cov=49/50
RA	251	.	NC_000913	1111728	0	C	T	bias_e_value=4247160	bias_p_value=0.915011	consensus_score=325.1	fisher_strand_p_value=0.617146	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/46	major_frequency=9.592e-01	minor_base=C	minor_cov=1/3	new_cov=48/46	polymorphism_frequency=9.592e-01	polymorphism_score=0.9	prediction=consensus	ref_cov=1/3	total_cov=49/50
RA	252	.	NC_000913	1169836	0	A	G	consensus_score=315.2	frequency=1	major_base=G	major_cov=49/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/35
RA	253	.	NC_000913	1189980	0	A	G	consensus_score=350.3	frequency=1	major_base=G	major_cov=53/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	254	.	NC_000913	1194922	0	G	A	consensus_score=350.9	frequency=1	major_base=A	major_cov=45/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/54
RA	255	.	NC_000913	1196220	0	C	T	consensus_score=147.4	frequency=1	major_base=T	major_cov=24/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/24
RA	256	.	NC_000913	1196232	0	C	T	consensus_score=143.9	frequency=1	major_base=T	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	257	.	NC_000913	1196245	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=131.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=22/21	major_frequency=9.773e-01	minor_base=T	minor_cov=1/0	new_cov=22/21	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=23/21
RA	258	.	NC_000913	1196247	0	A	G	consensus_score=137.8	frequency=1	major_base=G	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	259	.	NC_000913	1196277	0	C	T	consensus_score=86.7	deleted=1	frequency=1	major_base=T	major_cov=21/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	260	.	NC_000913	1196280	0	G	C	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=83.3	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997986	major_base=C	major_cov=20/11	major_frequency=9.688e-01	minor_base=A	minor_cov=1/0	new_cov=20/11	polymorphism_frequency=9.688e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	261	.	NC_000913	1196283	0	A	G	consensus_score=90.2	deleted=1	frequency=1	major_base=G	major_cov=21/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	262	.	NC_000913	1196292	0	C	T	consensus_score=89.8	deleted=1	frequency=1	major_base=T	major_cov=21/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	263	.	NC_000913	1196304	0	G	A	consensus_score=73.3	deleted=1	frequency=1	major_base=A	major_cov=17/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/11
RA	264	.	NC_000913	1196316	0	T	A	consensus_score=58.9	deleted=1	frequency=1	major_base=A	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	265	.	NC_000913	1196325	0	A	G	consensus_score=37.1	deleted=1	frequency=1	major_base=G	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	266	.	NC_000913	1196352	0	C	A	consensus_score=19.1	deleted=1	frequency=1	major_base=A	major_cov=5/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/6
RA	267	.	NC_000913	1253002	0	C	T	consensus_score=327.7	frequency=1	major_base=T	major_cov=41/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/52
RA	268	.	NC_000913	1272420	0	C	A	bias_e_value=0.725499	bias_p_value=1.56302e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.0	fisher_strand_p_value=7.95449e-09	frequency=2.745e-01	ks_quality_p_value=1	major_base=C	major_cov=31/43	major_frequency=7.255e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.745e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=31/43	total_cov=59/43
RA	269	.	NC_000913	1301992	0	A	T	consensus_score=346.0	frequency=1	major_base=T	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	270	.	NC_000913	1306736	0	T	G	consensus_score=405.3	frequency=1	major_base=G	major_cov=64/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/42
RA	271	.	NC_000913	1310770	0	A	G	consensus_score=353.5	frequency=1	major_base=G	major_cov=60/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/33
RA	272	.	NC_000913	1334966	0	A	C	bias_e_value=0.000831109	bias_p_value=1.79055e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.3	fisher_strand_p_value=6.69887e-12	frequency=2.308e-01	ks_quality_p_value=1	major_base=A	major_cov=49/71	major_frequency=7.692e-01	minor_base=C	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.308e-01	polymorphism_score=20.5	prediction=polymorphism	ref_cov=49/71	total_cov=85/71
RA	273	.	NC_000913	1337394	0	A	G	bias_e_value=3549200	bias_p_value=0.764641	consensus_score=355.2	fisher_strand_p_value=0.397959	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=59/38	major_frequency=9.898e-01	minor_base=T	minor_cov=0/1	new_cov=59/38	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/39
RA	274	.	NC_000913	1357202	0	C	T	consensus_score=417.6	frequency=1	major_base=T	major_cov=58/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/56
RA	275	.	NC_000913	1358859	0	T	C	consensus_score=348.9	frequency=1	major_base=C	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	276	.	NC_000913	1372018	0	C	A	bias_e_value=2418.79	bias_p_value=0.000521106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.0	fisher_strand_p_value=4.75758e-05	frequency=2.143e-01	ks_quality_p_value=1	major_base=C	major_cov=35/53	major_frequency=7.857e-01	minor_base=A	minor_cov=21/3	new_cov=21/3	polymorphism_frequency=2.143e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=35/53	total_cov=56/56
RA	277	.	NC_000913	1441038	0	G	A	consensus_score=308.1	frequency=1	major_base=A	major_cov=37/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/51
RA	278	.	NC_000913	1497385	0	T	C	bias_e_value=3605830	bias_p_value=0.776843	consensus_score=222.7	fisher_strand_p_value=0.419355	frequency=1	ks_quality_p_value=0.981143	major_base=C	major_cov=25/36	major_frequency=9.839e-01	minor_base=T	minor_cov=1/0	new_cov=25/36	polymorphism_frequency=9.839e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=26/36
RA	279	.	NC_000913	1497386	0	T	.	bias_e_value=3615700	bias_p_value=0.778967	consensus_score=287.9	fisher_strand_p_value=0.419355	frequency=1	ks_quality_p_value=0.986866	major_base=.	major_cov=25/36	major_frequency=9.839e-01	minor_base=C	minor_cov=1/0	new_cov=25/36	polymorphism_frequency=9.839e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	280	.	NC_000913	1497387	0	C	A	consensus_score=210.5	frequency=1	major_base=A	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	281	.	NC_000913	1497388	0	T	A	consensus_score=216.2	frequency=1	major_base=A	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	282	.	NC_000913	1502768	0	G	A	bias_e_value=23.9588	bias_p_value=5.1617e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.4	fisher_strand_p_value=3.23754e-07	frequency=2.323e-01	ks_quality_p_value=1	major_base=G	major_cov=42/34	major_frequency=7.677e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.323e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=42/34	total_cov=42/57
RA	283	.	NC_000913	1502770	0	T	C	bias_e_value=0.00301497	bias_p_value=6.49547e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.6	fisher_strand_p_value=2.55837e-11	frequency=3.434e-01	ks_quality_p_value=1	major_base=T	major_cov=42/23	major_frequency=6.566e-01	minor_base=C	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.434e-01	polymorphism_score=37.1	prediction=polymorphism	ref_cov=42/23	total_cov=42/57
RA	284	.	NC_000913	1502772	0	G	A	bias_e_value=0.0232587	bias_p_value=5.01087e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.6	fisher_strand_p_value=2.15444e-10	frequency=3.125e-01	ks_quality_p_value=1	major_base=G	major_cov=42/24	major_frequency=6.875e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.125e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=42/24	total_cov=42/55
RA	285	.	NC_000913	1584092	0	G	A	bias_e_value=2658110	bias_p_value=0.572665	consensus_score=454.8	fisher_strand_p_value=0.233171	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/68	major_frequency=9.848e-01	minor_base=G	minor_cov=2/0	new_cov=62/68	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=64/68
RA	286	.	NC_000913	1629247	0	C	T	consensus_score=348.3	frequency=1	major_base=T	major_cov=47/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/50
RA	287	.	NC_000913	1631903	0	G	T	bias_e_value=122.279	bias_p_value=2.63439e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.1	fisher_strand_p_value=1.85555e-06	frequency=2.451e-01	ks_quality_p_value=1	major_base=G	major_cov=37/40	major_frequency=7.549e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.451e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=37/40	total_cov=37/65
RA	288	.	NC_000913	1643679	0	A	T	consensus_score=263.7	frequency=1	major_base=T	major_cov=34/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/44
RA	289	.	NC_000913	1652331	0	T	C	consensus_score=389.3	frequency=1	major_base=C	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	290	.	NC_000913	1667460	0	G	A	consensus_score=539.1	frequency=1	major_base=A	major_cov=60/85	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/85	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/85
RA	291	.	NC_000913	1682459	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=309.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=49/38	major_frequency=9.886e-01	minor_base=A	minor_cov=1/0	new_cov=49/38	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/39
RA	292	.	NC_000913	1708916	0	A	G	bias_e_value=2858180	bias_p_value=0.615767	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.2	fisher_strand_p_value=0.264128	frequency=2.162e-01	ks_quality_p_value=1	major_base=A	major_cov=32/26	major_frequency=7.838e-01	minor_base=G	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.162e-01	polymorphism_score=27.7	prediction=polymorphism	ref_cov=32/26	total_cov=38/36
RA	293	.	NC_000913	1748841	0	C	T	consensus_score=227.8	frequency=1	major_base=T	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	294	.	NC_000913	1767014	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=281.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999706	major_base=T	major_cov=41/41	major_frequency=9.880e-01	minor_base=G	minor_cov=0/1	new_cov=41/41	polymorphism_frequency=9.880e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	295	.	NC_000913	1812509	0	G	T	bias_e_value=0.0215451	bias_p_value=4.64169e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=304.9	fisher_strand_p_value=1.98887e-10	frequency=2.254e-01	ks_quality_p_value=1	major_base=G	major_cov=64/46	major_frequency=7.746e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.254e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=64/46	total_cov=64/78
RA	296	.	NC_000913	1848300	0	C	T	consensus_score=347.3	frequency=1	major_base=T	major_cov=50/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/52
RA	297	.	NC_000913	1848301	0	C	T	consensus_score=354.8	frequency=1	major_base=T	major_cov=50/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/52
RA	298	.	NC_000913	1849629	0	T	C	consensus_score=414.4	frequency=1	major_base=C	major_cov=66/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/45
RA	299	.	NC_000913	1894839	0	T	C	bias_e_value=3607140	bias_p_value=0.777125	consensus_score=315.1	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/34	major_frequency=9.882e-01	minor_base=T	minor_cov=0/1	new_cov=50/34	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=50/35
RA	300	.	NC_000913	2040433	0	C	A	consensus_score=306.1	frequency=1	major_base=A	major_cov=58/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/35
RA	301	.	NC_000913	2041278	0	G	A	bias_e_value=3691460	bias_p_value=0.795291	consensus_score=475.1	fisher_strand_p_value=0.432836	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=57/76	major_frequency=9.925e-01	minor_base=C	minor_cov=1/0	new_cov=57/76	polymorphism_frequency=9.925e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/76
RA	302	.	NC_000913	2052885	0	G	A	consensus_score=416.9	frequency=1	major_base=A	major_cov=71/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/52
RA	303	.	NC_000913	2104024	0	G	T	consensus_score=362.9	frequency=1	major_base=T	major_cov=49/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/49
RA	304	.	NC_000913	2111259	0	G	.	consensus_score=559.0	frequency=1	major_base=.	major_cov=37/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/78
RA	305	.	NC_000913	2142598	0	G	A	consensus_score=352.5	frequency=1	major_base=A	major_cov=40/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/62
RA	306	.	NC_000913	2155197	0	G	A	consensus_score=318.6	frequency=1	major_base=A	major_cov=33/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/54
RA	307	.	NC_000913	2171384	0	A	C	bias_e_value=1926000	bias_p_value=0.414938	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.0	fisher_strand_p_value=0.139838	frequency=2.273e-01	ks_quality_p_value=1	major_base=A	major_cov=30/21	major_frequency=7.727e-01	minor_base=C	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=2.273e-01	polymorphism_score=37.5	prediction=polymorphism	ref_cov=30/21	total_cov=35/31
RA	308	.	NC_000913	2173363	0	C	.	bias_e_value=4641610	bias_p_value=0.99999	consensus_score=399.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995632	major_base=.	major_cov=36/49	major_frequency=9.884e-01	minor_base=C	minor_cov=0/1	new_cov=36/49	polymorphism_frequency=9.884e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/1	total_cov=36/50
RA	309	.	NC_000913	2173364	0	C	.	bias_e_value=4636840	bias_p_value=0.998963	consensus_score=399.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.954815	major_base=.	major_cov=36/49	major_frequency=9.884e-01	minor_base=C	minor_cov=0/1	new_cov=36/49	polymorphism_frequency=9.884e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/1	total_cov=36/50
RA	310	.	NC_000913	2173448	0	C	T	consensus_score=306.7	frequency=1	major_base=T	major_cov=37/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/53
RA	311	.	NC_000913	2182407	0	G	T	bias_e_value=7.44511	bias_p_value=1.60398e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.1	fisher_strand_p_value=9.33241e-08	frequency=2.320e-01	ks_quality_p_value=1	major_base=G	major_cov=48/48	major_frequency=7.680e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.320e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=48/48	total_cov=48/77
RA	312	.	NC_000913	2233609	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=410.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=67/47	major_frequency=9.913e-01	minor_base=G	minor_cov=1/0	new_cov=67/47	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/47
RA	313	.	NC_000913	2242247	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=294.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/49	major_frequency=9.889e-01	minor_base=G	minor_cov=0/1	new_cov=40/49	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/50
RA	314	.	NC_000913	2247134	0	A	C	bias_e_value=3421400	bias_p_value=0.737108	consensus_score=487.5	fisher_strand_p_value=0.369231	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=47/82	major_frequency=9.923e-01	minor_base=A	minor_cov=1/0	new_cov=47/82	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/82
RA	315	.	NC_000913	2288418	0	G	T	bias_e_value=4.55131e-05	bias_p_value=9.80537e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.4	fisher_strand_p_value=3.29697e-13	frequency=2.977e-01	ks_quality_p_value=1	major_base=G	major_cov=58/34	major_frequency=7.023e-01	minor_base=T	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=2.977e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=58/34	total_cov=58/73
RA	316	.	NC_000913	2307733	0	C	T	bias_e_value=3609640	bias_p_value=0.777662	consensus_score=337.5	fisher_strand_p_value=0.412371	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/57	major_frequency=9.897e-01	minor_base=G	minor_cov=1/0	new_cov=39/57	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/57
RA	317	.	NC_000913	2310878	0	A	T	bias_e_value=4641470	bias_p_value=0.99996	consensus_score=286.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991052	major_base=T	major_cov=43/46	major_frequency=9.889e-01	minor_base=.	minor_cov=0/1	new_cov=43/46	polymorphism_frequency=9.889e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	318	.	NC_000913	2310879	0	C	T	bias_e_value=4217840	bias_p_value=0.908693	consensus_score=284.3	fisher_strand_p_value=0.604333	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/46	major_frequency=9.667e-01	minor_base=C	minor_cov=2/1	new_cov=41/46	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/1	total_cov=43/47
RA	319	.	NC_000913	2404402	0	G	A	consensus_score=386.8	frequency=1	major_base=A	major_cov=53/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/52
RA	320	.	NC_000913	2405840	1	.	T	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=235.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99683	major_base=T	major_cov=36/34	major_frequency=9.722e-01	minor_base=.	minor_cov=1/1	new_cov=36/34	polymorphism_frequency=9.722e-01	polymorphism_score=0.7	prediction=consensus	ref_cov=1/1	total_cov=37/35
RA	321	.	NC_000913	2446592	0	C	A	consensus_score=286.8	frequency=1	major_base=A	major_cov=32/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/50
RA	322	.	NC_000913	2466633	0	C	A	bias_e_value=0.233957	bias_p_value=5.04038e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.9	fisher_strand_p_value=2.4186e-09	frequency=2.578e-01	ks_quality_p_value=1	major_base=C	major_cov=44/51	major_frequency=7.422e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.578e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=44/51	total_cov=77/51
RA	323	.	NC_000913	2477265	0	A	C	bias_e_value=0.000121597	bias_p_value=2.6197e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.9	fisher_strand_p_value=9.12054e-13	frequency=2.095e-01	ks_quality_p_value=1	major_base=A	major_cov=16/67	major_frequency=7.905e-01	minor_base=C	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.095e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=16/67	total_cov=38/67
RA	324	.	NC_000913	2485636	0	A	.	bias_e_value=3883650	bias_p_value=0.836696	consensus_score=535.8	fisher_strand_p_value=0.486726	frequency=1	ks_quality_p_value=0.998579	major_base=.	major_cov=58/54	major_frequency=9.912e-01	minor_base=A	minor_cov=0/1	new_cov=58/54	polymorphism_frequency=9.912e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=0/1	total_cov=58/55
RA	325	.	NC_000913	2485638	0	T	A	consensus_score=407.3	frequency=1	major_base=A	major_cov=58/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/55
RA	326	.	NC_000913	2522369	0	G	A	consensus_score=462.3	frequency=1	major_base=A	major_cov=51/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/76
RA	327	.	NC_000913	2587112	0	C	T	consensus_score=295.8	frequency=1	major_base=T	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	328	.	NC_000913	2668977	0	C	T	bias_e_value=3955750	bias_p_value=0.852228	consensus_score=483.3	fisher_strand_p_value=0.508256	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=81/61	major_frequency=9.861e-01	minor_base=C	minor_cov=2/0	new_cov=81/61	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=83/61
RA	329	.	NC_000913	2702363	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=202.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=39/24	major_frequency=9.844e-01	minor_base=C	minor_cov=1/0	new_cov=39/24	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/24
RA	330	.	NC_000913	2722838	0	G	T	bias_e_value=3.08913e-06	bias_p_value=6.65524e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.9	fisher_strand_p_value=2.0465e-14	frequency=3.063e-01	ks_quality_p_value=1	major_base=G	major_cov=56/21	major_frequency=6.937e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.063e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=56/21	total_cov=56/55
RA	331	.	NC_000913	2767445	0	C	A	bias_e_value=2.51815e-07	bias_p_value=5.42512e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.0	fisher_strand_p_value=1.54547e-15	frequency=2.703e-01	ks_quality_p_value=1	major_base=C	major_cov=13/68	major_frequency=7.297e-01	minor_base=A	minor_cov=29/1	new_cov=29/1	polymorphism_frequency=2.703e-01	polymorphism_score=23.3	prediction=polymorphism	ref_cov=13/68	total_cov=42/69
RA	332	.	NC_000913	2774947	0	G	A	bias_e_value=3878410	bias_p_value=0.835567	consensus_score=557.7	fisher_strand_p_value=0.484472	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=83/77	major_frequency=9.938e-01	minor_base=G	minor_cov=0/1	new_cov=83/77	polymorphism_frequency=9.938e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=83/78
RA	333	.	NC_000913	2867311	0	G	T	bias_e_value=3347840	bias_p_value=0.72126	consensus_score=280.8	fisher_strand_p_value=0.353659	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=53/28	major_frequency=9.878e-01	minor_base=G	minor_cov=0/1	new_cov=53/28	polymorphism_frequency=9.878e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/1	total_cov=53/29
RA	334	.	NC_000913	2880635	0	T	C	bias_e_value=3876390	bias_p_value=0.835131	consensus_score=454.0	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=59/64	major_frequency=9.919e-01	minor_base=T	minor_cov=1/0	new_cov=59/64	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=61/64
RA	335	.	NC_000913	2905400	0	C	A	bias_e_value=10.1288	bias_p_value=2.18216e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.5	fisher_strand_p_value=1.29427e-07	frequency=2.465e-01	ks_quality_p_value=1	major_base=C	major_cov=61/46	major_frequency=7.535e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.465e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=61/46	total_cov=96/46
RA	336	.	NC_000913	2926772	0	C	A	bias_e_value=3740000	bias_p_value=0.805749	consensus_score=348.1	fisher_strand_p_value=0.445545	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/56	major_frequency=9.901e-01	minor_base=T	minor_cov=1/0	new_cov=44/56	polymorphism_frequency=9.901e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=45/56
RA	337	.	NC_000913	2936855	0	T	G	consensus_score=353.9	frequency=1	major_base=G	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	338	.	NC_000913	2937210	0	C	T	consensus_score=347.3	frequency=1	major_base=T	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	339	.	NC_000913	2938548	0	A	T	consensus_score=429.6	frequency=1	major_base=T	major_cov=72/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/52
RA	340	.	NC_000913	2990480	0	C	A	bias_e_value=0.00819673	bias_p_value=1.76591e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.3	fisher_strand_p_value=7.25308e-11	frequency=2.566e-01	ks_quality_p_value=1	major_base=C	major_cov=53/60	major_frequency=7.434e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.566e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=53/60	total_cov=92/60
RA	341	.	NC_000913	3025601	0	T	.	consensus_score=655.6	frequency=1	major_base=.	major_cov=70/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/66
RA	342	.	NC_000913	3054886	0	G	T	bias_e_value=0.00736937	bias_p_value=1.58766e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.6	fisher_strand_p_value=6.49139e-11	frequency=2.880e-01	ks_quality_p_value=1	major_base=G	major_cov=33/56	major_frequency=7.120e-01	minor_base=T	minor_cov=35/1	new_cov=35/1	polymorphism_frequency=2.880e-01	polymorphism_score=28.8	prediction=polymorphism	ref_cov=33/56	total_cov=68/57
RA	343	.	NC_000913	3070858	0	T	G	bias_e_value=3860600	bias_p_value=0.831729	consensus_score=312.5	fisher_strand_p_value=0.488095	frequency=1	ks_quality_p_value=0.981808	major_base=G	major_cov=40/43	major_frequency=9.881e-01	minor_base=T	minor_cov=1/0	new_cov=40/43	polymorphism_frequency=9.881e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=41/43
RA	344	.	NC_000913	3207549	0	G	.	consensus_score=641.3	frequency=1	major_base=.	major_cov=58/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/75
RA	345	.	NC_000913	3279276	0	C	G	consensus_score=317.0	frequency=1	major_base=G	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	346	.	NC_000913	3296481	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=299.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999733	major_base=A	major_cov=43/43	major_frequency=9.885e-01	minor_base=C	minor_cov=1/0	new_cov=43/43	polymorphism_frequency=9.885e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	347	.	NC_000913	3324965	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=230.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/28	major_frequency=9.848e-01	minor_base=C	minor_cov=1/0	new_cov=37/28	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/28
RA	348	.	NC_000913	3326537	0	C	A	consensus_score=410.6	frequency=1	major_base=A	major_cov=48/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/63
RA	349	.	NC_000913	3329743	0	G	T	consensus_score=362.5	frequency=1	major_base=T	major_cov=58/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/43
RA	350	.	NC_000913	3388041	0	T	G	consensus_score=274.9	frequency=1	major_base=G	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	351	.	NC_000913	3411689	0	G	T	consensus_score=413.1	frequency=1	major_base=T	major_cov=69/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/47
RA	352	.	NC_000913	3433900	0	C	T	consensus_score=438.8	frequency=1	major_base=T	major_cov=48/81	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/81	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/81
RA	353	.	NC_000913	3439485	0	C	T	consensus_score=391.3	frequency=1	major_base=T	major_cov=51/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/57
RA	354	.	NC_000913	3474272	0	C	T	bias_e_value=3905250	bias_p_value=0.841348	consensus_score=272.2	fisher_strand_p_value=0.495123	frequency=1	ks_quality_p_value=0.994787	major_base=T	major_cov=40/42	major_frequency=9.762e-01	minor_base=G	minor_cov=0/2	new_cov=40/42	polymorphism_frequency=9.762e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	355	.	NC_000913	3474424	0	T	G	consensus_score=332.9	frequency=1	major_base=G	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	356	.	NC_000913	3486502	0	C	T	consensus_score=425.6	frequency=1	major_base=T	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	357	.	NC_000913	3486538	0	T	C	consensus_score=423.7	frequency=1	major_base=C	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	358	.	NC_000913	3511466	0	C	T	consensus_score=400.1	frequency=1	major_base=T	major_cov=58/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/53
RA	359	.	NC_000913	3520507	0	G	A	consensus_score=357.8	frequency=1	major_base=A	major_cov=46/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/60
RA	360	.	NC_000913	3555047	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=347.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=47/46	major_frequency=9.894e-01	minor_base=.	minor_cov=1/0	new_cov=47/46	polymorphism_frequency=9.894e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	361	.	NC_000913	3560362	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=432.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/62	major_frequency=9.920e-01	minor_base=G	minor_cov=0/1	new_cov=62/62	polymorphism_frequency=9.920e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=62/63
RA	362	.	NC_000913	3560455	1	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=462.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999869	major_base=G	major_cov=61/62	major_frequency=9.919e-01	minor_base=.	minor_cov=0/1	new_cov=61/62	polymorphism_frequency=9.919e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=61/63
RA	363	.	NC_000913	3623537	0	G	A	bias_e_value=0.000210553	bias_p_value=4.53616e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=339.1	fisher_strand_p_value=1.61119e-12	frequency=2.061e-01	ks_quality_p_value=1	major_base=G	major_cov=82/49	major_frequency=7.939e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.061e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=82/49	total_cov=83/92
RA	364	.	NC_000913	3647428	0	C	T	consensus_score=319.8	frequency=1	major_base=T	major_cov=51/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/41
RA	365	.	NC_000913	3707947	0	C	A	consensus_score=517.4	frequency=1	major_base=A	major_cov=94/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=94/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=94/55
RA	366	.	NC_000913	3719429	0	G	A	consensus_score=385.6	frequency=1	major_base=A	major_cov=55/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/54
RA	367	.	NC_000913	3725176	0	T	G	consensus_score=350.8	frequency=1	major_base=G	major_cov=39/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/53
RA	368	.	NC_000913	3729440	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=307.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/40	major_frequency=9.889e-01	minor_base=G	minor_cov=1/0	new_cov=49/40	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	369	.	NC_000913	3729441	0	C	T	consensus_score=321.1	frequency=1	major_base=T	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	370	.	NC_000913	3730560	0	C	T	consensus_score=307.2	frequency=1	major_base=T	major_cov=40/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/53
RA	371	.	NC_000913	3741871	0	G	T	bias_e_value=9.75552e-05	bias_p_value=2.10173e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.3	fisher_strand_p_value=7.25956e-13	frequency=3.043e-01	ks_quality_p_value=1	major_base=G	major_cov=53/27	major_frequency=6.957e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=3.043e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=53/27	total_cov=53/62
RA	372	.	NC_000913	3768435	0	C	A	bias_e_value=1.38152e-08	bias_p_value=2.97636e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=333.4	fisher_strand_p_value=7.81443e-17	frequency=2.674e-01	ks_quality_p_value=1	major_base=C	major_cov=44/82	major_frequency=7.326e-01	minor_base=A	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=2.674e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=44/82	total_cov=90/82
RA	373	.	NC_000913	3770539	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=295.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/47	major_frequency=9.882e-01	minor_base=C	minor_cov=0/1	new_cov=37/47	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=37/48
RA	374	.	NC_000913	3773173	0	G	.	bias_e_value=4641650	bias_p_value=1	consensus_score=579.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=73/47	major_frequency=9.917e-01	minor_base=G	minor_cov=1/0	new_cov=73/47	polymorphism_frequency=9.917e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=74/47
RA	375	.	NC_000913	3773176	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=451.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=74/48	major_frequency=9.919e-01	minor_base=C	minor_cov=1/0	new_cov=74/48	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=75/48
RA	376	.	NC_000913	3815883	1	.	C	bias_e_value=3913010	bias_p_value=0.843021	consensus_score=415.9	fisher_strand_p_value=0.49558	frequency=1	ks_quality_p_value=0.998654	major_base=C	major_cov=54/54	major_frequency=9.818e-01	minor_base=A	minor_cov=2/0	new_cov=54/54	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=57/54
RA	377	.	NC_000913	3911533	0	C	A	bias_e_value=2.23097e-06	bias_p_value=4.80641e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.9	fisher_strand_p_value=1.46288e-14	frequency=3.964e-01	ks_quality_p_value=1	major_base=C	major_cov=19/48	major_frequency=6.036e-01	minor_base=A	minor_cov=43/1	new_cov=43/1	polymorphism_frequency=3.964e-01	polymorphism_score=22.9	prediction=polymorphism	ref_cov=19/48	total_cov=62/49
RA	378	.	NC_000913	3923539	0	C	A	bias_e_value=491.911	bias_p_value=0.000105978	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.9	fisher_strand_p_value=8.34906e-06	frequency=2.909e-01	ks_quality_p_value=1	major_base=C	major_cov=49/29	major_frequency=7.091e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.909e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=49/29	total_cov=81/29
RA	379	.	NC_000913	3925834	0	C	T	consensus_score=496.7	frequency=1	major_base=T	major_cov=57/81	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/81	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/81
RA	380	.	NC_000913	3926991	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=423.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998876	major_base=A	major_cov=80/46	major_frequency=9.921e-01	minor_base=.	minor_cov=1/0	new_cov=80/46	polymorphism_frequency=9.921e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=81/46
RA	381	.	NC_000913	3966530	0	C	T	consensus_score=405.0	frequency=1	major_base=T	major_cov=58/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/60
RA	382	.	NC_000913	3966531	0	C	T	consensus_score=390.8	frequency=1	major_base=T	major_cov=58/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/60
RA	383	.	NC_000913	3966709	0	C	A	bias_e_value=0.160827	bias_p_value=3.46488e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.3	fisher_strand_p_value=1.63179e-09	frequency=3.333e-01	ks_quality_p_value=1	major_base=C	major_cov=26/42	major_frequency=6.667e-01	minor_base=A	minor_cov=33/1	new_cov=33/1	polymorphism_frequency=3.333e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=26/42	total_cov=59/43
RA	384	.	NC_000913	4003502	0	G	T	bias_e_value=2431830	bias_p_value=0.523915	consensus_score=319.8	fisher_strand_p_value=0.201262	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/51	major_frequency=9.785e-01	minor_base=C	minor_cov=2/0	new_cov=40/51	polymorphism_frequency=9.785e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/51
RA	385	.	NC_000913	4037496	0	A	T	bias_e_value=1967700	bias_p_value=0.423923	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.4	fisher_strand_p_value=0.144444	frequency=4.920e-01	ks_quality_p_value=1	major_base=A	major_cov=53/42	major_frequency=5.080e-01	minor_base=T	minor_cov=41/51	new_cov=41/51	polymorphism_frequency=4.920e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=53/42	total_cov=95/94
RA	386	.	NC_000913	4133311	0	G	A	bias_e_value=4641540	bias_p_value=0.999976	consensus_score=506.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993058	major_base=A	major_cov=63/89	major_frequency=9.935e-01	minor_base=G	minor_cov=0/1	new_cov=63/89	polymorphism_frequency=9.935e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/1	total_cov=63/90
RA	387	.	NC_000913	4136467	0	A	C	bias_e_value=17.9016	bias_p_value=3.85674e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.0	fisher_strand_p_value=2.37279e-07	frequency=2.347e-01	ks_quality_p_value=1	major_base=A	major_cov=32/43	major_frequency=7.653e-01	minor_base=C	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.347e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=32/43	total_cov=56/43
RA	388	.	NC_000913	4150418	0	A	G	consensus_score=471.1	frequency=1	major_base=G	major_cov=61/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/75
RA	389	.	NC_000913	4193996	0	T	G	consensus_score=249.5	frequency=1	major_base=G	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	390	.	NC_000913	4217310	0	A	G	consensus_score=340.5	frequency=1	major_base=G	major_cov=58/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/36
RA	391	.	NC_000913	4223638	0	T	C	bias_e_value=3866390	bias_p_value=0.832977	consensus_score=484.9	fisher_strand_p_value=0.480916	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=62/68	major_frequency=9.924e-01	minor_base=A	minor_cov=1/0	new_cov=62/68	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/68
RA	392	.	NC_000913	4241875	0	G	T	bias_e_value=0.00529743	bias_p_value=1.14128e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.0	fisher_strand_p_value=4.60157e-11	frequency=2.768e-01	ks_quality_p_value=1	major_base=G	major_cov=56/25	major_frequency=7.232e-01	minor_base=T	minor_cov=1/30	new_cov=1/30	polymorphism_frequency=2.768e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=56/25	total_cov=57/55
RA	393	.	NC_000913	4261040	0	C	A	bias_e_value=6.48455e-06	bias_p_value=1.39704e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=367.9	fisher_strand_p_value=4.39946e-14	frequency=2.299e-01	ks_quality_p_value=1	major_base=C	major_cov=51/83	major_frequency=7.701e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.299e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=51/83	total_cov=91/83
RA	394	.	NC_000913	4296268	0	T	C	bias_e_value=3077070	bias_p_value=0.662925	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.6	fisher_strand_p_value=0.330407	frequency=2.800e-01	ks_quality_p_value=0.912337	major_base=T	major_cov=26/10	major_frequency=7.200e-01	minor_base=C	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=2.800e-01	polymorphism_score=30.6	prediction=polymorphism	ref_cov=26/10	total_cov=34/16
RA	395	.	NC_000913	4296380	1	.	C	bias_e_value=3294240	bias_p_value=0.709714	consensus_score=232.1	fisher_strand_p_value=0.342857	frequency=1	ks_quality_p_value=0.999586	major_base=C	major_cov=46/23	major_frequency=9.857e-01	minor_base=T	minor_cov=0/1	new_cov=46/23	polymorphism_frequency=9.857e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=47/24
RA	396	.	NC_000913	4296380	2	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=238.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=46/24	major_frequency=9.859e-01	minor_base=.	minor_cov=1/0	new_cov=46/24	polymorphism_frequency=9.859e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=47/24
RA	397	.	NC_000913	4325644	0	C	T	consensus_score=279.2	frequency=1	major_base=T	major_cov=34/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/44
RA	398	.	NC_000913	4331890	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=455.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/65	major_frequency=9.922e-01	minor_base=G	minor_cov=0/1	new_cov=63/65	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/66
RA	399	.	NC_000913	4360965	0	C	A	bias_e_value=2.67688e-05	bias_p_value=5.76708e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.1	fisher_strand_p_value=1.90398e-13	frequency=2.553e-01	ks_quality_p_value=1	major_base=C	major_cov=37/68	major_frequency=7.447e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.553e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=37/68	total_cov=73/69
RA	400	.	NC_000913	4427822	0	C	A	bias_e_value=0.00441995	bias_p_value=9.52237e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.5	fisher_strand_p_value=3.81036e-11	frequency=3.158e-01	ks_quality_p_value=1	major_base=C	major_cov=42/49	major_frequency=6.842e-01	minor_base=A	minor_cov=42/0	new_cov=42/0	polymorphism_frequency=3.158e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=42/49	total_cov=84/49
RA	401	.	NC_000913	4437890	0	C	T	bias_e_value=3918540	bias_p_value=0.844213	consensus_score=484.0	fisher_strand_p_value=0.496611	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=68/69	major_frequency=9.856e-01	minor_base=G	minor_cov=0/2	new_cov=68/69	polymorphism_frequency=9.856e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/71
RA	402	.	NC_000913	4473900	0	C	T	bias_e_value=2727450	bias_p_value=0.587604	consensus_score=391.0	fisher_strand_p_value=0.24359	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=59/56	major_frequency=9.829e-01	minor_base=G	minor_cov=0/2	new_cov=59/56	polymorphism_frequency=9.829e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/58
RA	403	.	NC_000913	4475493	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=547.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=76/70	major_frequency=9.932e-01	minor_base=A	minor_cov=1/0	new_cov=76/70	polymorphism_frequency=9.932e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/70
RA	404	.	NC_000913	4476605	0	G	A	consensus_score=562.8	frequency=1	major_base=A	major_cov=83/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/72
RA	405	.	NC_000913	4489016	0	C	T	consensus_score=332.1	frequency=1	major_base=T	major_cov=51/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	406	.	NC_000913	4510238	0	T	G	bias_e_value=169350	bias_p_value=0.0364849	consensus_score=466.6	fisher_strand_p_value=0.00595877	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=69/60	major_frequency=9.485e-01	minor_base=T	minor_cov=0/7	new_cov=69/60	polymorphism_frequency=9.485e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/7	total_cov=69/67
RA	407	.	NC_000913	4532409	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=344.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/47	major_frequency=9.895e-01	minor_base=A	minor_cov=1/0	new_cov=47/47	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	408	.	NC_000913	4546601	0	C	T	consensus_score=425.9	frequency=1	major_base=T	major_cov=64/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/58
RA	409	.	NC_000913	4620610	0	G	A	consensus_score=259.9	frequency=1	major_base=A	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	410	.	NC_000913	4636925	0	G	C	consensus_score=312.0	frequency=1	major_base=C	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	411	.	NC_000913	4638240	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=370.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998654	major_base=A	major_cov=60/48	major_frequency=9.818e-01	minor_base=G	minor_cov=1/1	new_cov=60/48	polymorphism_frequency=9.818e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/1	total_cov=62/49
MC	412	.	NC_000913	257908	258683	768	0	left_inside_cov=0	left_outside_cov=153	right_inside_cov=1	right_outside_cov=154
MC	413	.	NC_000913	366181	366273	0	0	left_inside_cov=0	left_outside_cov=169	right_inside_cov=0	right_outside_cov=169
MC	414	.	NC_000913	1196277	1211467	0	0	left_inside_cov=32	left_outside_cov=39	right_inside_cov=35	right_outside_cov=36
MC	415	.	NC_000913	1978503	1979278	766	0	left_inside_cov=0	left_outside_cov=142	right_inside_cov=4	right_outside_cov=144
MC	416	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=66	right_inside_cov=2	right_outside_cov=69
MC	417	.	NC_000913	2822674	2829630	0	0	left_inside_cov=34	left_outside_cov=36	right_inside_cov=33	right_outside_cov=39
MC	418	.	NC_000913	3423793	3424487	441	249	left_inside_cov=35	left_outside_cov=37	right_inside_cov=35	right_outside_cov=36
JC	419	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=73	coverage_plus=67	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=291	max_min_left=149	max_min_left_minus=149	max_min_left_plus=140	max_min_right=147	max_min_right_minus=147	max_min_right_plus=144	max_pos_hash_score=590	max_right=289	max_right_minus=287	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.41	new_junction_read_count=145	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=140
JC	420	.	NC_000913	126288	-1	NC_000913	126829	1	0	alignment_overlap=18	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.169e-02	junction_possible_overlap_registers=276	key=NC_000913__126288__-1__NC_000913__126811__1__18____300__300__0__0	max_left=75	max_left_minus=75	max_left_plus=75	max_min_left=75	max_min_left_minus=75	max_min_left_plus=75	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=554	max_right=123	max_right_minus=123	max_right_plus=123	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.169e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=18	side_1_possible_overlap_registers=294	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=4
JC	421	.	NC_000913	146734	1	NC_000913	271761	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=5.844e-02	junction_possible_overlap_registers=293	key=NC_000913__146734__1__NC_000913__271762__-1__1____300__300__0__0	max_left=253	max_left_minus=253	max_left_plus=199	max_min_left=136	max_min_left_minus=0	max_min_left_plus=136	max_min_right=111	max_min_right_minus=46	max_min_right_plus=111	max_pos_hash_score=588	max_right=163	max_right_minus=46	max_right_plus=163	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=5.844e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=1	side_1_possible_overlap_registers=294	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=6
JC	422	.	NC_000913	146734	1	NC_000913	280111	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=5.825e-02	junction_possible_overlap_registers=294	key=NC_000913__146734__1__NC_000913__280111__-1__0____300__300__0__0	max_left=254	max_left_minus=254	max_left_plus=200	max_min_left=137	max_min_left_minus=0	max_min_left_plus=137	max_min_right=111	max_min_right_minus=46	max_min_right_plus=111	max_pos_hash_score=590	max_right=163	max_right_minus=46	max_right_plus=163	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=5.825e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=6
JC	423	.	NC_000913	146734	1	NC_000913	1470516	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=9.346e-02	junction_possible_overlap_registers=294	key=NC_000913__146734__1__NC_000913__1470516__-1__0____300__300__0__1	max_left=254	max_left_minus=254	max_left_plus=200	max_min_left=137	max_min_left_minus=102	max_min_left_plus=137	max_min_right=111	max_min_right_minus=46	max_min_right_plus=111	max_pos_hash_score=590	max_right=273	max_right_minus=273	max_right_plus=258	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.10	new_junction_read_count=10	polymorphism_frequency=9.346e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10
JC	424	.	NC_000913	146735	-1	NC_000913	270541	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.250e-01	junction_possible_overlap_registers=294	key=NC_000913__146735__-1__NC_000913__270541__1__0____300__300__0__1	max_left=267	max_left_minus=267	max_left_plus=267	max_min_left=110	max_min_left_minus=62	max_min_left_plus=110	max_min_right=110	max_min_right_minus=110	max_min_right_plus=28	max_pos_hash_score=590	max_right=269	max_right_minus=269	max_right_plus=243	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.13	new_junction_read_count=13	polymorphism_frequency=1.250e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=13
JC	425	.	NC_000913	177240	-1	NC_000913	177502	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.467e-02	junction_possible_overlap_registers=284	key=NC_000913__177240__-1__NC_000913__177492__1__10____300__300__0__0	max_left=205	max_left_minus=205	max_left_plus=89	max_min_left=136	max_min_left_minus=136	max_min_left_plus=89	max_min_right=19	max_min_right_minus=19	max_min_right_plus=0	max_pos_hash_score=570	max_right=201	max_right_minus=154	max_right_plus=201	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.467e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=4
JC	426	.	NC_000913	248193	-1	NC_000913	248295	1	0	alignment_overlap=31	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.417e-02	junction_possible_overlap_registers=263	key=NC_000913__248193__-1__NC_000913__248264__1__31____300__300__0__0	max_left=97	max_left_minus=96	max_left_plus=97	max_min_left=97	max_min_left_minus=96	max_min_left_plus=97	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=528	max_right=233	max_right_minus=233	max_right_plus=172	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=2.417e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.75	side_1_overlap=31	side_1_possible_overlap_registers=294	side_1_read_count=180	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.76	side_2_overlap=0	side_2_possible_overlap_registers=263	side_2_read_count=162	side_2_redundant=0	total_non_overlap_reads=4
JC	427	.	NC_000913	256107	-1	NC_000913	371382	1	0	alignment_overlap=8	coverage_minus=39	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=3.783e-01	junction_possible_overlap_registers=286	key=NC_000913__256107__-1__NC_000913__371374__1__8____300__300__0__0	max_left=279	max_left_minus=279	max_left_plus=267	max_min_left=145	max_min_left_minus=145	max_min_left_plus=132	max_min_right=142	max_min_right_minus=142	max_min_right_plus=133	max_pos_hash_score=574	max_right=288	max_right_minus=288	max_right_plus=265	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.94	new_junction_read_count=94	polymorphism_frequency=3.783e-01	pos_hash_score=54	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.43	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=147	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.66	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=166	side_2_redundant=0	total_non_overlap_reads=92
JC	428	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=69	coverage_plus=80	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=287	max_min_left=137	max_min_left_minus=94	max_min_left_plus=137	max_min_right=145	max_min_right_minus=132	max_min_right_plus=145	max_pos_hash_score=574	max_right=287	max_right_minus=287	max_right_plus=279	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.53	new_junction_read_count=153	polymorphism_frequency=1.000e+00	pos_hash_score=87	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=149
JC	429	.	NC_000913	258675	-1	NC_000913	1301058	-1	0	alignment_overlap=0	coverage_minus=62	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__258675__-1__NC_000913__1301058__-1__0____300__300__1__0	max_left=291	max_left_minus=291	max_left_plus=261	max_min_left=148	max_min_left_minus=148	max_min_left_plus=138	max_min_right=147	max_min_right_minus=147	max_min_right_plus=102	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=296	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.00	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=101
JC	430	.	NC_000913	270541	1	NC_000913	538182	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.724e-01	junction_possible_overlap_registers=294	key=NC_000913__270541__1__NC_000913__538182__1__0____300__300__1__0	max_left=298	max_left_minus=253	max_left_plus=298	max_min_left=124	max_min_left_minus=89	max_min_left_plus=124	max_min_right=105	max_min_right_minus=105	max_min_right_plus=74	max_pos_hash_score=590	max_right=272	max_right_minus=272	max_right_plus=259	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.19	new_junction_read_count=20	polymorphism_frequency=1.724e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=20
JC	431	.	NC_000913	270541	1	NC_000913	1390230	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=2.121e-01	junction_possible_overlap_registers=294	key=NC_000913__270541__1__NC_000913__1390230__1__0____300__300__1__0	max_left=215	max_left_minus=215	max_left_plus=163	max_min_left=130	max_min_left_minus=0	max_min_left_plus=130	max_min_right=144	max_min_right_minus=131	max_min_right_plus=144	max_pos_hash_score=590	max_right=191	max_right_minus=131	max_right_plus=191	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.14	new_junction_read_count=14	polymorphism_frequency=2.121e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.51	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=12
JC	432	.	NC_000913	270541	1	NC_000913	1390231	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.333e-01	junction_possible_overlap_registers=294	key=NC_000913__270541__1__NC_000913__1390231__-1__0____300__300__1__0	max_left=232	max_left_minus=232	max_left_plus=230	max_min_left=93	max_min_left_minus=33	max_min_left_plus=93	max_min_right=126	max_min_right_minus=121	max_min_right_plus=126	max_pos_hash_score=590	max_right=267	max_right_minus=267	max_right_plus=204	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=1.333e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.51	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=8
JC	433	.	NC_000913	271761	-1	NC_000913	538183	-1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=13	flanking_left=300	flanking_right=300	frequency=1.574e-01	junction_possible_overlap_registers=292	key=NC_000913__271761__-1__NC_000913__538185__-1__2____300__300__0__0	max_left=148	max_left_minus=148	max_left_plus=148	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=273	max_right_minus=271	max_right_plus=273	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.17	new_junction_read_count=17	polymorphism_frequency=1.574e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=91	side_2_redundant=0	total_non_overlap_reads=16
JC	434	.	NC_000913	271761	-1	NC_000913	971729	-1	0	alignment_overlap=2	coverage_minus=9	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=1.341e-01	junction_possible_overlap_registers=292	key=NC_000913__271763__-1__NC_000913__971729__-1__2____300__300__0__0	max_left=173	max_left_minus=168	max_left_plus=173	max_min_left=135	max_min_left_minus=135	max_min_left_plus=121	max_min_right=138	max_min_right_minus=138	max_min_right_plus=124	max_pos_hash_score=586	max_right=293	max_right_minus=271	max_right_plus=293	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.18	new_junction_read_count=18	polymorphism_frequency=1.341e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=2	side_2_possible_overlap_registers=294	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=18
JC	435	.	NC_000913	271761	-1	NC_000913	1034135	-1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.999e-02	junction_possible_overlap_registers=293	key=NC_000913__271762__-1__NC_000913__1034135__-1__1____300__300__0__0	max_left=290	max_left_minus=290	max_left_plus=32	max_min_left=59	max_min_left_minus=59	max_min_left_plus=32	max_min_right=33	max_min_right_minus=33	max_min_right_plus=0	max_pos_hash_score=588	max_right=292	max_right_minus=292	max_right_plus=267	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=6.999e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=6
JC	436	.	NC_000913	271761	-1	NC_000913	1123837	-1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.636e-02	junction_possible_overlap_registers=292	key=NC_000913__271763__-1__NC_000913__1123837__-1__2____300__300__0__0	max_left=135	max_left_minus=135	max_left_plus=98	max_min_left=135	max_min_left_minus=135	max_min_left_plus=98	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=251	max_right_minus=251	max_right_plus=206	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=6.636e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=2	side_2_possible_overlap_registers=294	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=6
JC	437	.	NC_000913	271761	-1	NC_000913	1390230	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=12	flanking_left=300	flanking_right=300	frequency=2.245e-01	junction_possible_overlap_registers=293	key=NC_000913__271762__-1__NC_000913__1390230__1__1____300__300__0__0	max_left=174	max_left_minus=174	max_left_plus=169	max_min_left=135	max_min_left_minus=91	max_min_left_plus=135	max_min_right=143	max_min_right_minus=125	max_min_right_plus=143	max_pos_hash_score=588	max_right=263	max_right_minus=227	max_right_plus=263	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.15	new_junction_read_count=15	polymorphism_frequency=2.245e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.51	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=15
JC	438	.	NC_000913	271761	-1	NC_000913	1390231	-1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=25	flanking_left=300	flanking_right=300	frequency=4.477e-01	junction_possible_overlap_registers=293	key=NC_000913__271762__-1__NC_000913__1390231__-1__1____300__300__0__0	max_left=298	max_left_minus=290	max_left_plus=298	max_min_left=137	max_min_left_minus=121	max_min_left_plus=137	max_min_right=125	max_min_right_minus=124	max_min_right_plus=125	max_pos_hash_score=588	max_right=292	max_right_minus=292	max_right_plus=271	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.41	new_junction_read_count=42	polymorphism_frequency=4.477e-01	pos_hash_score=30	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.51	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=40
JC	439	.	NC_000913	271761	-1	NC_000913	1605514	-1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.737e-02	junction_possible_overlap_registers=292	key=NC_000913__271763__-1__NC_000913__1605514__-1__2____300__300__0__0	max_left=234	max_left_minus=155	max_left_plus=234	max_min_left=101	max_min_left_minus=101	max_min_left_plus=50	max_min_right=137	max_min_right_minus=133	max_min_right_plus=137	max_pos_hash_score=586	max_right=282	max_right_minus=272	max_right_plus=282	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=9.737e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=2	side_2_possible_overlap_registers=294	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=9
JC	440	.	NC_000913	271761	-1	NC_000913	1661229	-1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.451e-02	junction_possible_overlap_registers=291	key=NC_000913__271763__-1__NC_000913__1661230__-1__3____300__300__0__0	max_left=150	max_left_minus=127	max_left_plus=150	max_min_left=127	max_min_left_minus=127	max_min_left_plus=0	max_min_right=146	max_min_right_minus=0	max_min_right_plus=146	max_pos_hash_score=584	max_right=275	max_right_minus=275	max_right_plus=146	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=6.451e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=2	side_2_possible_overlap_registers=293	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=5
JC	441	.	NC_000913	271761	-1	NC_000913	2590459	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.649e-01	junction_possible_overlap_registers=294	key=NC_000913__271761__-1__NC_000913__2590459__-1__0____300__300__0__0	max_left=168	max_left_minus=168	max_left_plus=78	max_min_left=123	max_min_left_minus=123	max_min_left_plus=78	max_min_right=131	max_min_right_minus=131	max_min_right_plus=0	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=249	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.16	new_junction_read_count=16	polymorphism_frequency=1.649e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=15
JC	442	.	NC_000913	271761	-1	NC_000913	2698403	-1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.146e-02	junction_possible_overlap_registers=293	key=NC_000913__271762__-1__NC_000913__2698403__-1__1____300__300__0__0	max_left=168	max_left_minus=168	max_left_plus=102	max_min_left=135	max_min_left_minus=135	max_min_left_plus=102	max_min_right=131	max_min_right_minus=131	max_min_right_plus=0	max_pos_hash_score=588	max_right=229	max_right_minus=229	max_right_plus=197	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=4.146e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=116	side_2_redundant=0	total_non_overlap_reads=5
JC	443	.	NC_000913	271761	-1	NC_000913	2999636	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.375e-02	junction_possible_overlap_registers=294	key=NC_000913__271761__-1__NC_000913__2999636__-1__0____300__300__0__0	max_left=163	max_left_minus=163	max_left_plus=146	max_min_left=146	max_min_left_minus=135	max_min_left_plus=146	max_min_right=130	max_min_right_minus=130	max_min_right_plus=0	max_pos_hash_score=590	max_right=254	max_right_minus=174	max_right_plus=254	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=9.375e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=9
JC	444	.	NC_000913	271761	-1	NC_000913	3040633	-1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=7.890e-02	junction_possible_overlap_registers=293	key=NC_000913__271762__-1__NC_000913__3040633__-1__1____300__300__0__0	max_left=137	max_left_minus=76	max_left_plus=137	max_min_left=137	max_min_left_minus=76	max_min_left_plus=137	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=588	max_right=269	max_right_minus=230	max_right_plus=269	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=7.890e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=7
JC	445	.	NC_000913	271761	-1	NC_000913	3132444	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.170e-01	junction_possible_overlap_registers=294	key=NC_000913__271761__-1__NC_000913__3132444__1__0____300__300__0__0	max_left=150	max_left_minus=112	max_left_plus=150	max_min_left=121	max_min_left_minus=112	max_min_left_plus=121	max_min_right=150	max_min_right_minus=0	max_min_right_plus=150	max_pos_hash_score=590	max_right=291	max_right_minus=234	max_right_plus=291	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.11	new_junction_read_count=11	polymorphism_frequency=1.170e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=11
JC	446	.	NC_000913	271761	-1	NC_000913	3151653	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=6.250e-02	junction_possible_overlap_registers=293	key=NC_000913__271761__-1__NC_000913__3151654__-1__1____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=99	max_min_left=99	max_min_left_minus=0	max_min_left_plus=99	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_pos_hash_score=588	max_right=270	max_right_minus=6	max_right_plus=270	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=6.250e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=6
JC	447	.	NC_000913	271761	-1	NC_000913	3536952	-1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.574e-02	junction_possible_overlap_registers=293	key=NC_000913__271761__-1__NC_000913__3536953__-1__1____300__300__0__0	max_left=154	max_left_minus=154	max_left_plus=113	max_min_left=113	max_min_left_minus=110	max_min_left_plus=113	max_min_right=143	max_min_right_minus=143	max_min_right_plus=0	max_pos_hash_score=588	max_right=292	max_right_minus=292	max_right_plus=241	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=9.574e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=9
JC	448	.	NC_000913	271761	-1	NC_000913	3767095	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=6.941e-02	junction_possible_overlap_registers=292	key=NC_000913__271763__-1__NC_000913__3767095__1__2____300__300__0__0	max_left=165	max_left_minus=142	max_left_plus=165	max_min_left=142	max_min_left_minus=142	max_min_left_plus=98	max_min_right=133	max_min_right_minus=0	max_min_right_plus=133	max_pos_hash_score=586	max_right=292	max_right_minus=258	max_right_plus=292	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=6.941e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=2	side_2_possible_overlap_registers=294	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=8
JC	449	.	NC_000913	271761	-1	NC_000913	3978531	-1	0	alignment_overlap=3	coverage_minus=8	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=4.327e-01	junction_possible_overlap_registers=291	key=NC_000913__271762__-1__NC_000913__3978533__-1__3____300__300__0__0	max_left=126	max_left_minus=126	max_left_plus=122	max_min_left=126	max_min_left_minus=126	max_min_left_plus=122	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=584	max_right=276	max_right_minus=276	max_right_plus=238	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.19	new_junction_read_count=19	polymorphism_frequency=4.327e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.25	side_2_overlap=1	side_2_possible_overlap_registers=292	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=19
JC	450	.	NC_000913	271761	-1	NC_000913	3993262	1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.739e-02	junction_possible_overlap_registers=293	key=NC_000913__271762__-1__NC_000913__3993262__1__1____300__300__0__0	max_left=284	max_left_minus=284	max_left_plus=188	max_min_left=89	max_min_left_minus=89	max_min_left_plus=37	max_min_right=136	max_min_right_minus=136	max_min_right_plus=122	max_pos_hash_score=588	max_right=276	max_right_minus=276	max_right_plus=262	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.10	new_junction_read_count=10	polymorphism_frequency=9.739e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=10
JC	451	.	NC_000913	271761	-1	NC_000913	4000481	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.064e-01	junction_possible_overlap_registers=294	key=NC_000913__271761__-1__NC_000913__4000481__1__0____300__300__0__0	max_left=168	max_left_minus=168	max_left_plus=90	max_min_left=140	max_min_left_minus=140	max_min_left_plus=90	max_min_right=132	max_min_right_minus=132	max_min_right_plus=0	max_pos_hash_score=590	max_right=298	max_right_minus=295	max_right_plus=298	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.15	new_junction_read_count=15	polymorphism_frequency=1.064e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=15
JC	452	.	NC_000913	271761	-1	NC_000913	4117985	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.383e-02	junction_possible_overlap_registers=294	key=NC_000913__271761__-1__NC_000913__4117985__-1__0____300__300__0__0	max_left=259	max_left_minus=259	max_left_plus=241	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=120	max_min_right_minus=98	max_min_right_plus=120	max_pos_hash_score=590	max_right=120	max_right_minus=98	max_right_plus=120	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=6.383e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=6
JC	453	.	NC_000913	271761	-1	NC_000913	4349081	-1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=6.514e-02	junction_possible_overlap_registers=293	key=NC_000913__271762__-1__NC_000913__4349081__-1__1____300__300__0__0	max_left=135	max_left_minus=135	max_left_plus=126	max_min_left=135	max_min_left_minus=135	max_min_left_plus=126	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=588	max_right=286	max_right_minus=182	max_right_plus=286	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.10	new_junction_read_count=10	polymorphism_frequency=6.514e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.40	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=144	side_2_redundant=0	total_non_overlap_reads=10
JC	454	.	NC_000913	271763	-1	NC_000913	732867	1	-123	alignment_overlap=-123	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.149e-01	junction_possible_overlap_registers=171	key=NC_000913__271763__-1__NC_000913__732867__1__-123__TTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCAC__300__300__0__0	max_left=167	max_left_minus=144	max_left_plus=167	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=33	max_min_right_plus=77	max_pos_hash_score=344	max_right=77	max_right_minus=33	max_right_plus=77	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.07	new_junction_read_count=4	polymorphism_frequency=1.149e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.52	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=TTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCAC
JC	455	.	NC_000913	271763	-1	NC_000913	734738	1	-123	alignment_overlap=-123	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.437e-02	junction_possible_overlap_registers=171	key=NC_000913__271763__-1__NC_000913__734738__1__-123__TTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCAC__300__300__0__0	max_left=167	max_left_minus=144	max_left_plus=167	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=33	max_min_right_plus=77	max_pos_hash_score=344	max_right=77	max_right_minus=33	max_right_plus=77	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.07	new_junction_read_count=4	polymorphism_frequency=9.437e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=TTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCAC
JC	456	.	NC_000913	273955	1	NC_000913	362930	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=8.136e-02	junction_possible_overlap_registers=294	key=NC_000913__273955__1__NC_000913__362930__-1__0____300__300__1__0	max_left=273	max_left_minus=273	max_left_plus=223	max_min_left=132	max_min_left_minus=132	max_min_left_plus=98	max_min_right=130	max_min_right_minus=120	max_min_right_plus=130	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=288	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.23	new_junction_read_count=24	polymorphism_frequency=8.136e-02	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.64	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=271	side_2_redundant=0	total_non_overlap_reads=22
JC	457	.	NC_000913	280111	-1	NC_000913	538183	-1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=13	flanking_left=300	flanking_right=300	frequency=1.579e-01	junction_possible_overlap_registers=291	key=NC_000913__280112__-1__NC_000913__538185__-1__3____300__300__0__0	max_left=148	max_left_minus=148	max_left_plus=148	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=584	max_right=272	max_right_minus=270	max_right_plus=272	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.17	new_junction_read_count=17	polymorphism_frequency=1.579e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=1	side_2_possible_overlap_registers=292	side_2_read_count=91	side_2_redundant=0	total_non_overlap_reads=16
JC	458	.	NC_000913	280111	-1	NC_000913	732867	1	-125	alignment_overlap=-125	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.161e-01	junction_possible_overlap_registers=169	key=NC_000913__280111__-1__NC_000913__732867__1__-125__ACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCAC__300__300__0__0	max_left=165	max_left_minus=142	max_left_plus=165	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=33	max_min_right_plus=77	max_pos_hash_score=340	max_right=77	max_right_minus=33	max_right_plus=77	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=4	polymorphism_frequency=1.161e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.52	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=ACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCAC
JC	459	.	NC_000913	280111	-1	NC_000913	734738	1	-125	alignment_overlap=-125	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.538e-02	junction_possible_overlap_registers=169	key=NC_000913__280111__-1__NC_000913__734738__1__-125__ACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCAC__300__300__0__0	max_left=165	max_left_minus=142	max_left_plus=165	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=33	max_min_right_plus=77	max_pos_hash_score=340	max_right=77	max_right_minus=33	max_right_plus=77	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=4	polymorphism_frequency=9.538e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=ACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCAC
JC	460	.	NC_000913	280111	-1	NC_000913	971729	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=1.333e-01	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__971729__-1__0____300__300__0__0	max_left=173	max_left_minus=168	max_left_plus=173	max_min_left=135	max_min_left_minus=135	max_min_left_plus=121	max_min_right=140	max_min_right_minus=140	max_min_right_plus=126	max_pos_hash_score=590	max_right=295	max_right_minus=273	max_right_plus=295	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.18	new_junction_read_count=18	polymorphism_frequency=1.333e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=18
JC	461	.	NC_000913	280111	-1	NC_000913	1034135	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.977e-02	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__1034135__-1__0____300__300__0__0	max_left=179	max_left_minus=179	max_left_plus=32	max_min_left=59	max_min_left_minus=59	max_min_left_plus=32	max_min_right=118	max_min_right_minus=118	max_min_right_plus=0	max_pos_hash_score=590	max_right=293	max_right_minus=293	max_right_plus=268	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=6.977e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=6
JC	462	.	NC_000913	280111	-1	NC_000913	1123837	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.593e-02	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__1123837__-1__0____300__300__0__0	max_left=135	max_left_minus=135	max_left_plus=98	max_min_left=135	max_min_left_minus=135	max_min_left_plus=98	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=253	max_right_minus=253	max_right_plus=208	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=6.593e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=6
JC	463	.	NC_000913	280111	-1	NC_000913	1390230	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=12	flanking_left=300	flanking_right=300	frequency=2.239e-01	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__1390230__1__0____300__300__0__0	max_left=174	max_left_minus=174	max_left_plus=169	max_min_left=135	max_min_left_minus=91	max_min_left_plus=135	max_min_right=144	max_min_right_minus=126	max_min_right_plus=144	max_pos_hash_score=590	max_right=264	max_right_minus=228	max_right_plus=264	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.15	new_junction_read_count=15	polymorphism_frequency=2.239e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.51	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=15
JC	464	.	NC_000913	280111	-1	NC_000913	1605514	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.677e-02	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__1605514__-1__0____300__300__0__0	max_left=180	max_left_minus=155	max_left_plus=180	max_min_left=101	max_min_left_minus=101	max_min_left_plus=50	max_min_right=139	max_min_right_minus=135	max_min_right_plus=139	max_pos_hash_score=590	max_right=284	max_right_minus=274	max_right_plus=284	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=9.677e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=9
JC	465	.	NC_000913	280111	-1	NC_000913	1661229	-1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=8.750e-02	junction_possible_overlap_registers=293	key=NC_000913__280111__-1__NC_000913__1661230__-1__1____300__300__0__0	max_left=176	max_left_minus=176	max_left_plus=150	max_min_left=127	max_min_left_minus=127	max_min_left_plus=0	max_min_right=148	max_min_right_minus=124	max_min_right_plus=148	max_pos_hash_score=588	max_right=277	max_right_minus=277	max_right_plus=148	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=8.750e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=7
JC	466	.	NC_000913	280111	-1	NC_000913	2590459	-1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.654e-01	junction_possible_overlap_registers=293	key=NC_000913__280112__-1__NC_000913__2590459__-1__1____300__300__0__0	max_left=168	max_left_minus=168	max_left_plus=78	max_min_left=123	max_min_left_minus=123	max_min_left_plus=78	max_min_right=130	max_min_right_minus=130	max_min_right_plus=0	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=248	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.16	new_junction_read_count=16	polymorphism_frequency=1.654e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=15
JC	467	.	NC_000913	280111	-1	NC_000913	2698403	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.132e-02	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__2698403__-1__0____300__300__0__0	max_left=168	max_left_minus=168	max_left_plus=102	max_min_left=135	max_min_left_minus=135	max_min_left_plus=102	max_min_right=132	max_min_right_minus=132	max_min_right_plus=0	max_pos_hash_score=590	max_right=230	max_right_minus=230	max_right_plus=198	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=4.132e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=116	side_2_redundant=0	total_non_overlap_reads=5
JC	468	.	NC_000913	280111	-1	NC_000913	2999636	-1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.404e-02	junction_possible_overlap_registers=293	key=NC_000913__280112__-1__NC_000913__2999636__-1__1____300__300__0__0	max_left=163	max_left_minus=163	max_left_plus=146	max_min_left=146	max_min_left_minus=135	max_min_left_plus=146	max_min_right=129	max_min_right_minus=129	max_min_right_plus=0	max_pos_hash_score=588	max_right=253	max_right_minus=173	max_right_plus=253	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=9.404e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=9
JC	469	.	NC_000913	280111	-1	NC_000913	3040633	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=7.865e-02	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__3040633__-1__0____300__300__0__0	max_left=137	max_left_minus=76	max_left_plus=137	max_min_left=137	max_min_left_minus=76	max_min_left_plus=137	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=270	max_right_minus=231	max_right_plus=270	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=7.865e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=7
JC	470	.	NC_000913	280111	-1	NC_000913	3132444	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.170e-01	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__3132444__1__0____300__300__0__0	max_left=150	max_left_minus=112	max_left_plus=150	max_min_left=121	max_min_left_minus=112	max_min_left_plus=121	max_min_right=150	max_min_right_minus=0	max_min_right_plus=150	max_pos_hash_score=590	max_right=291	max_right_minus=234	max_right_plus=291	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.11	new_junction_read_count=11	polymorphism_frequency=1.170e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=11
JC	471	.	NC_000913	280111	-1	NC_000913	3151653	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=5.263e-02	junction_possible_overlap_registers=293	key=NC_000913__280111__-1__NC_000913__3151654__-1__1____300__300__0__0	max_left=99	max_left_minus=0	max_left_plus=99	max_min_left=99	max_min_left_minus=0	max_min_left_plus=99	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=588	max_right=270	max_right_minus=0	max_right_plus=270	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=5.263e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=5
JC	472	.	NC_000913	280111	-1	NC_000913	3536952	-1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.604e-02	junction_possible_overlap_registers=292	key=NC_000913__280112__-1__NC_000913__3536953__-1__2____300__300__0__0	max_left=154	max_left_minus=154	max_left_plus=113	max_min_left=113	max_min_left_minus=110	max_min_left_plus=113	max_min_right=142	max_min_right_minus=142	max_min_right_plus=0	max_pos_hash_score=586	max_right=291	max_right_minus=291	max_right_plus=240	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=9.604e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=1	side_2_possible_overlap_registers=293	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=9
JC	473	.	NC_000913	280111	-1	NC_000913	3767095	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=6.897e-02	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__3767095__1__0____300__300__0__0	max_left=165	max_left_minus=142	max_left_plus=165	max_min_left=142	max_min_left_minus=142	max_min_left_plus=98	max_min_right=135	max_min_right_minus=0	max_min_right_plus=135	max_pos_hash_score=590	max_right=294	max_right_minus=260	max_right_plus=294	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=6.897e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=8
JC	474	.	NC_000913	280111	-1	NC_000913	3978531	-1	0	alignment_overlap=2	coverage_minus=9	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=4.444e-01	junction_possible_overlap_registers=292	key=NC_000913__280111__-1__NC_000913__3978533__-1__2____300__300__0__0	max_left=177	max_left_minus=177	max_left_plus=122	max_min_left=126	max_min_left_minus=126	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=0	max_pos_hash_score=586	max_right=277	max_right_minus=277	max_right_plus=239	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.20	new_junction_read_count=20	polymorphism_frequency=4.444e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.25	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=20
JC	475	.	NC_000913	280111	-1	NC_000913	3993262	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=7.000e-02	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__3993262__1__0____300__300__0__0	max_left=163	max_left_minus=163	max_left_plus=37	max_min_left=89	max_min_left_minus=89	max_min_left_plus=37	max_min_right=137	max_min_right_minus=137	max_min_right_plus=0	max_pos_hash_score=590	max_right=277	max_right_minus=277	max_right_plus=263	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=7.000e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=7
JC	476	.	NC_000913	280111	-1	NC_000913	4000481	1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.067e-01	junction_possible_overlap_registers=293	key=NC_000913__280112__-1__NC_000913__4000481__1__1____300__300__0__0	max_left=168	max_left_minus=168	max_left_plus=90	max_min_left=140	max_min_left_minus=140	max_min_left_plus=90	max_min_right=131	max_min_right_minus=131	max_min_right_plus=0	max_pos_hash_score=588	max_right=297	max_right_minus=294	max_right_plus=297	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.15	new_junction_read_count=15	polymorphism_frequency=1.067e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=15
JC	477	.	NC_000913	280111	-1	NC_000913	4349081	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=6.494e-02	junction_possible_overlap_registers=294	key=NC_000913__280111__-1__NC_000913__4349081__-1__0____300__300__0__0	max_left=135	max_left_minus=135	max_left_plus=126	max_min_left=135	max_min_left_minus=135	max_min_left_plus=126	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=287	max_right_minus=183	max_right_plus=287	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.10	new_junction_read_count=10	polymorphism_frequency=6.494e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.40	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=144	side_2_redundant=0	total_non_overlap_reads=10
JC	478	.	NC_000913	362930	-1	NC_000913	2066159	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.166e-02	junction_possible_overlap_registers=294	key=NC_000913__362930__-1__NC_000913__2066159__1__0____300__300__0__0	max_left=298	max_left_minus=288	max_left_plus=298	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=13	max_pos_hash_score=590	max_right=15	max_right_minus=15	max_right_plus=13	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=2.166e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.64	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=271	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=6
JC	479	.	NC_000913	366180	-1	NC_000913	366274	1	0	alignment_overlap=0	coverage_minus=98	coverage_plus=63	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__366180__-1__NC_000913__366274__1__0____300__300__0__0	max_left=296	max_left_minus=295	max_left_plus=296	max_min_left=141	max_min_left_minus=136	max_min_left_plus=141	max_min_right=144	max_min_right_minus=141	max_min_right_plus=144	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=294	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.63	new_junction_read_count=167	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=161
JC	480	.	NC_000913	375817	-1	NC_000913	376250	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=1.870e-02	junction_possible_overlap_registers=284	key=NC_000913__375817__-1__NC_000913__376240__1__10____300__300__0__0	max_left=118	max_left_minus=118	max_left_plus=118	max_min_left=7	max_min_left_minus=7	max_min_left_plus=0	max_min_right=72	max_min_right_minus=72	max_min_right_plus=72	max_pos_hash_score=570	max_right=72	max_right_minus=72	max_right_plus=72	neg_log10_pos_hash_p_value=9.6	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.870e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.48	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=152	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.69	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=168	side_2_redundant=0	total_non_overlap_reads=3
JC	481	.	NC_000913	381260	1	NC_000913	886412	1	0	alignment_overlap=0	coverage_minus=40	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__381260__1__NC_000913__886412__1__0____300__300__1__0	max_left=296	max_left_minus=269	max_left_plus=296	max_min_left=147	max_min_left_minus=135	max_min_left_plus=147	max_min_right=137	max_min_right_minus=137	max_min_right_plus=135	max_pos_hash_score=590	max_right=295	max_right_minus=295	max_right_plus=288	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.79	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=81
JC	482	.	NC_000913	382590	-1	NC_000913	886416	-1	0	alignment_overlap=0	coverage_minus=40	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__382590__-1__NC_000913__886416__-1__0____300__300__1__0	max_left=286	max_left_minus=271	max_left_plus=286	max_min_left=146	max_min_left_minus=142	max_min_left_plus=146	max_min_right=140	max_min_right_minus=140	max_min_right_plus=125	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=298	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.81	new_junction_read_count=83	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=83
JC	483	.	NC_000913	523362	-1	NC_000913	523972	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.497e-02	junction_possible_overlap_registers=284	key=NC_000913__523362__-1__NC_000913__523962__1__10____300__300__0__0	max_left=98	max_left_minus=98	max_left_plus=34	max_min_left=34	max_min_left_minus=19	max_min_left_plus=34	max_min_right=44	max_min_right_minus=44	max_min_right_plus=0	max_pos_hash_score=570	max_right=217	max_right_minus=217	max_right_plus=217	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=6.497e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=4
JC	484	.	NC_000913	538183	-1	NC_000913	1470516	-1	0	alignment_overlap=2	coverage_minus=17	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=2.417e-01	junction_possible_overlap_registers=292	key=NC_000913__538185__-1__NC_000913__1470516__-1__2____300__300__0__1	max_left=273	max_left_minus=273	max_left_plus=271	max_min_left=99	max_min_left_minus=99	max_min_left_plus=41	max_min_right=148	max_min_right_minus=148	max_min_right_plus=148	max_pos_hash_score=586	max_right=283	max_right_minus=207	max_right_plus=283	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.28	new_junction_read_count=29	polymorphism_frequency=2.417e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=25
JC	485	.	NC_000913	696466	-1	NC_000913	696793	1	0	alignment_overlap=10	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.012e-01	junction_possible_overlap_registers=284	key=NC_000913__696466__-1__NC_000913__696783__1__10____300__300__0__0	max_left=187	max_left_minus=187	max_left_plus=176	max_min_left=88	max_min_left_minus=88	max_min_left_plus=88	max_min_right=119	max_min_right_minus=103	max_min_right_plus=119	max_pos_hash_score=570	max_right=145	max_right_minus=145	max_right_plus=145	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=1.012e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=8
JC	486	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.903e-02	junction_possible_overlap_registers=216	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=126	max_left_minus=126	max_left_plus=65	max_min_left=56	max_min_left_minus=0	max_min_left_plus=56	max_min_right=81	max_min_right_minus=81	max_min_right_plus=52	max_pos_hash_score=434	max_right=123	max_right_minus=81	max_right_plus=123	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.903e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=4
JC	487	.	NC_000913	732239	-1	NC_000913	3622029	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.505e-01	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0	max_left=196	max_left_minus=152	max_left_plus=196	max_min_left=71	max_min_left_minus=50	max_min_left_plus=71	max_min_right=137	max_min_right_minus=137	max_min_right_plus=92	max_pos_hash_score=566	max_right=238	max_right_minus=238	max_right_plus=217	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=1.505e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.44	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=4
JC	488	.	NC_000913	732239	-1	NC_000913	3765020	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.375e-01	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0	max_left=196	max_left_minus=152	max_left_plus=196	max_min_left=71	max_min_left_minus=50	max_min_left_plus=71	max_min_right=137	max_min_right_minus=137	max_min_right_plus=92	max_pos_hash_score=566	max_right=238	max_right_minus=238	max_right_plus=217	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=1.375e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.44	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=4
JC	489	.	NC_000913	732867	1	NC_000913	1470516	-1	-125	alignment_overlap=-125	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=1.161e-01	junction_possible_overlap_registers=169	key=NC_000913__732867__1__NC_000913__1470516__-1__-125__GTGCCGGCGGGAATCCCCCACTGTGCATAGGCAACTCACGCTATGAACGCTTCAGCTTATCAATAGCGGAAGTTATAATTTCATTGTCATCAAACTTGTACAACATAGTATCTAAAACAGGAAGT__300__300__0__1	max_left=77	max_left_minus=77	max_left_plus=33	max_min_left=77	max_min_left_minus=77	max_min_left_plus=33	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=340	max_right=165	max_right_minus=165	max_right_plus=142	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=4	polymorphism_frequency=1.161e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4	unique_read_sequence=GTGCCGGCGGGAATCCCCCACTGTGCATAGGCAACTCACGCTATGAACGCTTCAGCTTATCAATAGCGGAAGTTATAATTTCATTGTCATCAAACTTGTACAACATAGTATCTAAAACAGGAAGT
JC	490	.	NC_000913	734738	1	NC_000913	1470516	-1	-125	alignment_overlap=-125	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=9.538e-02	junction_possible_overlap_registers=169	key=NC_000913__734738__1__NC_000913__1470516__-1__-125__GTGCCGGCGGGAATCCCCCACTGTGCATAGGCAACTCACGCTATGAACGCTTCAGCTTATCAATAGCGGAAGTTATAATTTCATTGTCATCAAACTTGTACAACATAGTATCTAAAACAGGAAGT__300__300__0__1	max_left=77	max_left_minus=77	max_left_plus=33	max_min_left=77	max_min_left_minus=77	max_min_left_plus=33	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=340	max_right=165	max_right_minus=165	max_right_plus=142	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=4	polymorphism_frequency=9.538e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4	unique_read_sequence=GTGCCGGCGGGAATCCCCCACTGTGCATAGGCAACTCACGCTATGAACGCTTCAGCTTATCAATAGCGGAAGTTATAATTTCATTGTCATCAAACTTGTACAACATAGTATCTAAAACAGGAAGT
JC	491	.	NC_000913	781369	1	NC_000913	2521006	-1	-2	alignment_overlap=-2	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.765e-02	junction_possible_overlap_registers=292	key=NC_000913__781369__1__NC_000913__2521006__-1__-2__GG__300__300__0__0	max_left=138	max_left_minus=138	max_left_plus=138	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=586	max_right=47	max_right_minus=47	max_right_plus=47	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.765e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GG
JC	492	.	NC_000913	781369	1	NC_000913	2521127	-1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.155e-02	junction_possible_overlap_registers=293	key=NC_000913__781369__1__NC_000913__2521127__-1__-1__G__300__300__0__0	max_left=138	max_left_minus=138	max_left_plus=138	max_min_left=23	max_min_left_minus=23	max_min_left_plus=0	max_min_right=48	max_min_right_minus=48	max_min_right_plus=48	max_pos_hash_score=588	max_right=274	max_right_minus=274	max_right_plus=48	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=6.155e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=G
JC	493	.	NC_000913	781577	1	NC_000913	2521006	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.102e-02	junction_possible_overlap_registers=290	key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0	max_left=175	max_left_minus=175	max_left_plus=175	max_min_left=93	max_min_left_minus=25	max_min_left_plus=93	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=582	max_right=271	max_right_minus=271	max_right_plus=237	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=6.102e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=GAAG
JC	494	.	NC_000913	971728	1	NC_000913	1469296	1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=16	flanking_left=300	flanking_right=300	frequency=1.837e-01	junction_possible_overlap_registers=292	key=NC_000913__971726__1__NC_000913__1469296__1__2____300__300__0__1	max_left=273	max_left_minus=271	max_left_plus=273	max_min_left=121	max_min_left_minus=31	max_min_left_plus=121	max_min_right=132	max_min_right_minus=78	max_min_right_plus=132	max_pos_hash_score=586	max_right=275	max_right_minus=267	max_right_plus=275	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.26	new_junction_read_count=27	polymorphism_frequency=1.837e-01	pos_hash_score=20	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=120	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	495	.	NC_000913	971729	-1	NC_000913	1470516	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=16	flanking_left=300	flanking_right=300	frequency=2.252e-01	junction_possible_overlap_registers=294	key=NC_000913__971729__-1__NC_000913__1470516__-1__0____300__300__0__1	max_left=295	max_left_minus=295	max_left_plus=273	max_min_left=140	max_min_left_minus=126	max_min_left_plus=140	max_min_right=135	max_min_right_minus=121	max_min_right_plus=135	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=289	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.33	new_junction_read_count=34	polymorphism_frequency=2.252e-01	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=34
JC	496	.	NC_000913	1034134	1	NC_000913	1469296	1	0	alignment_overlap=2	coverage_minus=6	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.319e-01	junction_possible_overlap_registers=292	key=NC_000913__1034132__1__NC_000913__1469296__1__2____300__300__0__1	max_left=282	max_left_minus=282	max_left_plus=273	max_min_left=121	max_min_left_minus=116	max_min_left_plus=121	max_min_right=113	max_min_right_minus=113	max_min_right_plus=46	max_pos_hash_score=586	max_right=251	max_right_minus=250	max_right_plus=251	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.12	new_junction_read_count=12	polymorphism_frequency=1.319e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	497	.	NC_000913	1034135	-1	NC_000913	1470516	-1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=1.919e-01	junction_possible_overlap_registers=294	key=NC_000913__1034135__-1__NC_000913__1470516__-1__0____300__300__0__1	max_left=293	max_left_minus=268	max_left_plus=293	max_min_left=118	max_min_left_minus=116	max_min_left_plus=118	max_min_right=59	max_min_right_minus=32	max_min_right_plus=59	max_pos_hash_score=590	max_right=269	max_right_minus=269	max_right_plus=266	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.19	new_junction_read_count=19	polymorphism_frequency=1.919e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=17
JC	498	.	NC_000913	1095166	1	NC_000913	1470516	-1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=31	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=294	key=NC_000913__1095166__1__NC_000913__1470516__-1__0____300__300__1__1	max_left=297	max_left_minus=288	max_left_plus=297	max_min_left=145	max_min_left_minus=145	max_min_left_plus=114	max_min_right=150	max_min_right_minus=150	max_min_right_plus=132	max_pos_hash_score=590	max_right=289	max_right_minus=269	max_right_plus=289	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.50	new_junction_read_count=51	polymorphism_frequency=NA	pos_hash_score=39	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=50
JC	499	.	NC_000913	1095167	-1	NC_000913	1469296	1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=27	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=294	key=NC_000913__1095167__-1__NC_000913__1469296__1__0____300__300__1__1	max_left=284	max_left_minus=262	max_left_plus=284	max_min_left=138	max_min_left_minus=121	max_min_left_plus=138	max_min_right=144	max_min_right_minus=144	max_min_right_plus=129	max_pos_hash_score=590	max_right=297	max_right_minus=235	max_right_plus=297	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.47	new_junction_read_count=48	polymorphism_frequency=NA	pos_hash_score=30	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=48
JC	500	.	NC_000913	1123836	1	NC_000913	1469296	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=1.905e-01	junction_possible_overlap_registers=294	key=NC_000913__1123836__1__NC_000913__1469296__1__0____300__300__0__1	max_left=267	max_left_minus=262	max_left_plus=267	max_min_left=112	max_min_left_minus=42	max_min_left_plus=112	max_min_right=129	max_min_right_minus=117	max_min_right_plus=129	max_pos_hash_score=590	max_right=281	max_right_minus=281	max_right_plus=275	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.19	new_junction_read_count=20	polymorphism_frequency=1.905e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	501	.	NC_000913	1123837	-1	NC_000913	1470516	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.500e-01	junction_possible_overlap_registers=294	key=NC_000913__1123837__-1__NC_000913__1470516__-1__0____300__300__0__1	max_left=253	max_left_minus=208	max_left_plus=253	max_min_left=96	max_min_left_minus=74	max_min_left_plus=96	max_min_right=135	max_min_right_minus=98	max_min_right_plus=135	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=276	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.15	new_junction_read_count=15	polymorphism_frequency=1.500e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=15
JC	502	.	NC_000913	1134476	-1	NC_000913	1134847	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.743e-02	junction_possible_overlap_registers=284	key=NC_000913__1134476__-1__NC_000913__1134837__1__10____300__300__0__0	max_left=187	max_left_minus=187	max_left_plus=173	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=117	max_min_right_minus=103	max_min_right_plus=117	max_pos_hash_score=570	max_right=163	max_right_minus=103	max_right_plus=163	neg_log10_pos_hash_p_value=9.6	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.743e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=119	side_2_redundant=0	total_non_overlap_reads=3
JC	503	.	NC_000913	1166125	-1	NC_000913	1166621	1	0	alignment_overlap=15	coverage_minus=3	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=6.627e-02	junction_possible_overlap_registers=279	key=NC_000913__1166125__-1__NC_000913__1166606__1__15____300__300__0__0	max_left=151	max_left_minus=151	max_left_plus=151	max_min_left=24	max_min_left_minus=24	max_min_left_plus=24	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=560	max_right=65	max_right_minus=65	max_right_plus=65	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=6.627e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.26	side_1_overlap=15	side_1_possible_overlap_registers=294	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=8
JC	504	.	NC_000913	1166128	-1	NC_000913	1166624	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.388e-02	junction_possible_overlap_registers=292	key=NC_000913__1166128__-1__NC_000913__1166622__1__2____300__300__0__0	max_left=120	max_left_minus=120	max_left_plus=120	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=76	max_min_right_minus=76	max_min_right_plus=76	max_pos_hash_score=586	max_right=76	max_right_minus=76	max_right_plus=76	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.388e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.22	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=125	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=4
JC	505	.	NC_000913	1223636	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1223636__1__NC_000913__1469240__-1__0____300__300__0__1	max_left=294	max_left_minus=279	max_left_plus=294	max_min_left=149	max_min_left_minus=149	max_min_left_plus=138	max_min_right=148	max_min_right_minus=148	max_min_right_plus=147	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=297	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.78	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=80
JC	506	.	NC_000913	1223640	-1	NC_000913	1467910	1	0	alignment_overlap=1	coverage_minus=47	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1223641__-1__NC_000913__1467910__1__1____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=290	max_min_left=144	max_min_left_minus=144	max_min_left_plus=116	max_min_right=149	max_min_right_minus=149	max_min_right_plus=148	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=278	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.92	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=90
JC	507	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.310e-02	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=263	max_left_minus=263	max_left_plus=251	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=34	max_min_right_minus=27	max_min_right_plus=34	max_pos_hash_score=550	max_right=34	max_right_minus=27	max_right_plus=34	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=7.310e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=5
JC	508	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.980e-02	junction_possible_overlap_registers=274	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=231	max_min_left=135	max_min_left_minus=122	max_min_left_plus=135	max_min_right=127	max_min_right_minus=127	max_min_right_plus=49	max_pos_hash_score=550	max_right=202	max_right_minus=127	max_right_plus=202	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=8.980e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=7
JC	509	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=75	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=290	max_left_plus=294	max_min_left=146	max_min_left_minus=139	max_min_left_plus=146	max_min_right=140	max_min_right_minus=134	max_min_right_plus=140	max_pos_hash_score=582	max_right=295	max_right_minus=292	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.31	new_junction_read_count=133	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=131
JC	510	.	NC_000913	1301050	1	NC_000913	1978503	1	0	alignment_overlap=0	coverage_minus=39	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1301050__1__NC_000913__1978503__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=293	max_min_left=143	max_min_left_minus=143	max_min_left_plus=139	max_min_right=149	max_min_right_minus=145	max_min_right_plus=149	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=294	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=285	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=83
JC	511	.	NC_000913	1390230	1	NC_000913	1470516	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=3.247e-01	junction_possible_overlap_registers=294	key=NC_000913__1390230__1__NC_000913__1470516__-1__0____300__300__0__1	max_left=264	max_left_minus=264	max_left_plus=228	max_min_left=144	max_min_left_minus=144	max_min_left_plus=126	max_min_right=135	max_min_right_minus=135	max_min_right_plus=91	max_pos_hash_score=590	max_right=284	max_right_minus=278	max_right_plus=284	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.24	new_junction_read_count=25	polymorphism_frequency=3.247e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.51	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	512	.	NC_000913	1411899	1	NC_000913	1434958	-1	0	alignment_overlap=26	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.190e-02	junction_possible_overlap_registers=268	key=NC_000913__1411899__1__NC_000913__1434984__-1__26____300__300__0__0	max_left=255	max_left_minus=255	max_left_plus=102	max_min_left=102	max_min_left_minus=0	max_min_left_plus=102	max_min_right=107	max_min_right_minus=107	max_min_right_plus=0	max_pos_hash_score=538	max_right=172	max_right_minus=107	max_right_plus=172	neg_log10_pos_hash_p_value=9.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.190e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.22	side_1_overlap=26	side_1_possible_overlap_registers=294	side_1_read_count=125	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.65	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=154	side_2_redundant=0	total_non_overlap_reads=3
JC	513	.	NC_000913	1469240	-1	NC_000913	1590540	-1	0	alignment_overlap=0	coverage_minus=62	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1469240__-1__NC_000913__1590540__-1__0____300__300__1__0	max_left=297	max_left_minus=295	max_left_plus=297	max_min_left=144	max_min_left_minus=137	max_min_left_plus=144	max_min_right=137	max_min_right_minus=137	max_min_right_plus=104	max_pos_hash_score=590	max_right=299	max_right_minus=295	max_right_plus=299	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.30	new_junction_read_count=133	polymorphism_frequency=9.924e-01	pos_hash_score=71	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=119
JC	514	.	NC_000913	1469296	1	NC_000913	1593439	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=7.229e-02	junction_possible_overlap_registers=293	key=NC_000913__1469296__1__NC_000913__1593438__1__1____300__300__1__0	max_left=242	max_left_minus=242	max_left_plus=201	max_min_left=135	max_min_left_minus=135	max_min_left_plus=29	max_min_right=98	max_min_right_minus=57	max_min_right_plus=98	max_pos_hash_score=588	max_right=278	max_right_minus=151	max_right_plus=278	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=7.229e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=6
JC	515	.	NC_000913	1469296	1	NC_000913	1605513	1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.748e-01	junction_possible_overlap_registers=293	key=NC_000913__1469296__1__NC_000913__1605512__1__1____300__300__1__0	max_left=277	max_left_minus=252	max_left_plus=277	max_min_left=145	max_min_left_minus=125	max_min_left_plus=145	max_min_right=136	max_min_right_minus=109	max_min_right_plus=136	max_pos_hash_score=588	max_right=286	max_right_minus=211	max_right_plus=286	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.18	new_junction_read_count=18	polymorphism_frequency=1.748e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=18
JC	516	.	NC_000913	1469296	1	NC_000913	1661228	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=1.798e-01	junction_possible_overlap_registers=294	key=NC_000913__1469296__1__NC_000913__1661228__1__0____300__300__1__0	max_left=294	max_left_minus=243	max_left_plus=294	max_min_left=114	max_min_left_minus=108	max_min_left_plus=114	max_min_right=136	max_min_right_minus=136	max_min_right_plus=72	max_pos_hash_score=590	max_right=289	max_right_minus=285	max_right_plus=289	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.16	new_junction_read_count=16	polymorphism_frequency=1.798e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=16
JC	517	.	NC_000913	1469296	1	NC_000913	3132445	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=2.150e-01	junction_possible_overlap_registers=294	key=NC_000913__1469296__1__NC_000913__3132445__-1__0____300__300__1__0	max_left=253	max_left_minus=253	max_left_plus=214	max_min_left=134	max_min_left_minus=134	max_min_left_plus=92	max_min_right=121	max_min_right_minus=121	max_min_right_plus=95	max_pos_hash_score=590	max_right=253	max_right_minus=218	max_right_plus=253	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.22	new_junction_read_count=23	polymorphism_frequency=2.150e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=23
JC	518	.	NC_000913	1469296	1	NC_000913	3151652	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.300e-01	junction_possible_overlap_registers=294	key=NC_000913__1469296__1__NC_000913__3151652__1__0____300__300__1__0	max_left=242	max_left_minus=234	max_left_plus=242	max_min_left=134	max_min_left_minus=134	max_min_left_plus=94	max_min_right=134	max_min_right_minus=108	max_min_right_plus=134	max_pos_hash_score=590	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.13	new_junction_read_count=13	polymorphism_frequency=1.300e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=13
JC	519	.	NC_000913	1469296	1	NC_000913	3767096	-1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.508e-01	junction_possible_overlap_registers=293	key=NC_000913__1469296__1__NC_000913__3767097__-1__1____300__300__1__0	max_left=276	max_left_minus=252	max_left_plus=276	max_min_left=138	max_min_left_minus=138	max_min_left_plus=114	max_min_right=138	max_min_right_minus=138	max_min_right_plus=92	max_pos_hash_score=588	max_right=274	max_right_minus=273	max_right_plus=274	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.19	new_junction_read_count=19	polymorphism_frequency=1.508e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=19
JC	520	.	NC_000913	1469296	1	NC_000913	4117985	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.368e-02	junction_possible_overlap_registers=294	key=NC_000913__1469296__1__NC_000913__4117985__-1__0____300__300__1__0	max_left=253	max_left_minus=253	max_left_plus=190	max_min_left=116	max_min_left_minus=116	max_min_left_plus=13	max_min_right=68	max_min_right_minus=68	max_min_right_plus=2	max_pos_hash_score=590	max_right=286	max_right_minus=218	max_right_plus=286	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=7.368e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=7
JC	521	.	NC_000913	1470516	-1	NC_000913	1605514	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=13	flanking_left=300	flanking_right=300	frequency=2.000e-01	junction_possible_overlap_registers=294	key=NC_000913__1470516__-1__NC_000913__1605514__-1__0____300__300__1__0	max_left=298	max_left_minus=276	max_left_plus=298	max_min_left=101	max_min_left_minus=101	max_min_left_plus=50	max_min_right=139	max_min_right_minus=135	max_min_right_plus=139	max_pos_hash_score=590	max_right=284	max_right_minus=274	max_right_plus=284	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.20	new_junction_read_count=21	polymorphism_frequency=2.000e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=21
JC	522	.	NC_000913	1470516	-1	NC_000913	1661229	-1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=1.798e-01	junction_possible_overlap_registers=293	key=NC_000913__1470516__-1__NC_000913__1661230__-1__1____300__300__1__0	max_left=297	max_left_minus=275	max_left_plus=297	max_min_left=127	max_min_left_minus=127	max_min_left_plus=0	max_min_right=148	max_min_right_minus=124	max_min_right_plus=148	max_pos_hash_score=588	max_right=277	max_right_minus=277	max_right_plus=148	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.16	new_junction_read_count=16	polymorphism_frequency=1.798e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=16
JC	523	.	NC_000913	1470516	-1	NC_000913	2590459	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=2.358e-01	junction_possible_overlap_registers=294	key=NC_000913__1470516__-1__NC_000913__2590459__-1__0____300__300__1__0	max_left=284	max_left_minus=284	max_left_plus=260	max_min_left=123	max_min_left_minus=123	max_min_left_plus=78	max_min_right=131	max_min_right_minus=131	max_min_right_plus=84	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=249	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.24	new_junction_read_count=25	polymorphism_frequency=2.358e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=24
JC	524	.	NC_000913	1470516	-1	NC_000913	2698403	-1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.452e-02	junction_possible_overlap_registers=294	key=NC_000913__1470516__-1__NC_000913__2698403__-1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=102	max_min_left=135	max_min_left_minus=135	max_min_left_plus=102	max_min_right=132	max_min_right_minus=132	max_min_right_plus=0	max_pos_hash_score=590	max_right=230	max_right_minus=230	max_right_plus=198	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=6.452e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=116	side_2_redundant=0	total_non_overlap_reads=8
JC	525	.	NC_000913	1470516	-1	NC_000913	2999636	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.471e-01	junction_possible_overlap_registers=294	key=NC_000913__1470516__-1__NC_000913__2999636__-1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=146	max_min_left=146	max_min_left_minus=135	max_min_left_plus=146	max_min_right=130	max_min_right_minus=130	max_min_right_plus=0	max_pos_hash_score=590	max_right=254	max_right_minus=174	max_right_plus=254	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.15	new_junction_read_count=15	polymorphism_frequency=1.471e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=15
JC	526	.	NC_000913	1470516	-1	NC_000913	3536952	-1	0	alignment_overlap=1	coverage_minus=8	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.237e-01	junction_possible_overlap_registers=293	key=NC_000913__1470516__-1__NC_000913__3536953__-1__1____300__300__1__0	max_left=283	max_left_minus=283	max_left_plus=113	max_min_left=113	max_min_left_minus=110	max_min_left_plus=113	max_min_right=143	max_min_right_minus=143	max_min_right_plus=0	max_pos_hash_score=588	max_right=292	max_right_minus=292	max_right_plus=241	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.12	new_junction_read_count=12	polymorphism_frequency=1.237e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=12
JC	527	.	NC_000913	1470516	-1	NC_000913	4000481	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.656e-01	junction_possible_overlap_registers=294	key=NC_000913__1470516__-1__NC_000913__4000481__1__0____300__300__1__0	max_left=274	max_left_minus=245	max_left_plus=274	max_min_left=140	max_min_left_minus=140	max_min_left_plus=90	max_min_right=132	max_min_right_minus=132	max_min_right_plus=102	max_pos_hash_score=590	max_right=298	max_right_minus=295	max_right_plus=298	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.24	new_junction_read_count=25	polymorphism_frequency=1.656e-01	pos_hash_score=20	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=25
JC	528	.	NC_000913	1470516	-1	NC_000913	4117985	-1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=3.383e-01	junction_possible_overlap_registers=294	key=NC_000913__1470516__-1__NC_000913__4117985__-1__0____300__300__1__0	max_left=298	max_left_minus=284	max_left_plus=298	max_min_left=140	max_min_left_minus=140	max_min_left_plus=105	max_min_right=142	max_min_right_minus=125	max_min_right_plus=142	max_pos_hash_score=590	max_right=291	max_right_minus=291	max_right_plus=259	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.44	new_junction_read_count=45	polymorphism_frequency=3.383e-01	pos_hash_score=32	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=43
JC	529	.	NC_000913	1590536	1	NC_000913	1651548	-1	0	alignment_overlap=2	coverage_minus=41	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1590534__1__NC_000913__1651548__-1__2____300__300__0__1	max_left=269	max_left_minus=269	max_left_plus=265	max_min_left=133	max_min_left_minus=133	max_min_left_plus=119	max_min_right=139	max_min_right_minus=117	max_min_right_plus=139	max_pos_hash_score=586	max_right=282	max_right_minus=275	max_right_plus=282	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.72	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=287	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=71
JC	530	.	NC_000913	1740692	-1	NC_000913	1740909	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.732e-02	junction_possible_overlap_registers=284	key=NC_000913__1740692__-1__NC_000913__1740899__1__10____300__300__0__0	max_left=170	max_left_minus=170	max_left_plus=59	max_min_left=73	max_min_left_minus=73	max_min_left_plus=59	max_min_right=120	max_min_right_minus=120	max_min_right_plus=0	max_pos_hash_score=570	max_right=268	max_right_minus=217	max_right_plus=268	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.732e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=4
JC	531	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=82	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=291	max_left_minus=291	max_left_plus=255	max_min_left=144	max_min_left_minus=132	max_min_left_plus=144	max_min_right=143	max_min_right_minus=143	max_min_right_plus=135	max_pos_hash_score=574	max_right=291	max_right_minus=291	max_right_plus=286	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.40	new_junction_read_count=140	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=137
JC	532	.	NC_000913	1978503	1	NC_000913	2089842	1	0	alignment_overlap=1	coverage_minus=53	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1978503__1__NC_000913__2089841__1__1____300__300__1__0	max_left=292	max_left_minus=292	max_left_plus=290	max_min_left=141	max_min_left_minus=138	max_min_left_plus=141	max_min_right=147	max_min_right_minus=147	max_min_right_plus=146	max_pos_hash_score=588	max_right=290	max_right_minus=290	max_right_plus=285	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103
JC	533	.	NC_000913	2067353	-1	NC_000913	3656652	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.190e-02	junction_possible_overlap_registers=294	key=NC_000913__2067353__-1__NC_000913__3656652__1__0____300__300__0__0	max_left=53	max_left_minus=23	max_left_plus=53	max_min_left=53	max_min_left_minus=23	max_min_left_plus=53	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=285	max_right_minus=277	max_right_plus=285	neg_log10_pos_hash_p_value=9.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.190e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=3
JC	534	.	NC_000913	2089850	-1	NC_000913	3583428	1	0	alignment_overlap=1	coverage_minus=37	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2089851__-1__NC_000913__3583428__1__1____300__300__0__1	max_left=298	max_left_minus=293	max_left_plus=298	max_min_left=147	max_min_left_minus=133	max_min_left_plus=147	max_min_right=147	max_min_right_minus=144	max_min_right_plus=147	max_pos_hash_score=588	max_right=289	max_right_minus=289	max_right_plus=275	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.85	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=284	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=82
JC	535	.	NC_000913	2176844	1	NC_000913	4503515	-1	0	alignment_overlap=1	coverage_minus=50	coverage_plus=61	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2176843__1__NC_000913__4503515__-1__1____300__300__0__0	max_left=294	max_left_minus=280	max_left_plus=294	max_min_left=148	max_min_left_minus=148	max_min_left_plus=125	max_min_right=149	max_min_right_minus=144	max_min_right_plus=149	max_pos_hash_score=588	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.12	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	read_count_offset=13	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=280	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=111
JC	536	.	NC_000913	2176856	-1	NC_000913	4502090	1	0	alignment_overlap=0	coverage_minus=66	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2176856__-1__NC_000913__4502090__1__0____300__300__0__0	max_left=299	max_left_minus=296	max_left_plus=299	max_min_left=141	max_min_left_minus=138	max_min_left_plus=141	max_min_right=147	max_min_right_minus=147	max_min_right_plus=136	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=296	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.09	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	read_count_offset=13	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=281	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=108
JC	537	.	NC_000913	2238948	1	NC_000913	2514275	1	0	alignment_overlap=2	coverage_minus=30	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__2238946__1__NC_000913__2514275__1__2____300__300__0__1	max_left=293	max_left_minus=291	max_left_plus=293	max_min_left=148	max_min_left_minus=125	max_min_left_plus=148	max_min_right=138	max_min_right_minus=81	max_min_right_plus=138	max_pos_hash_score=586	max_right=296	max_right_minus=296	max_right_plus=291	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.89	new_junction_read_count=91	polymorphism_frequency=9.889e-01	pos_hash_score=54	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=286	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=90
JC	538	.	NC_000913	2238953	-1	NC_000913	2515616	-1	0	alignment_overlap=3	coverage_minus=38	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__2238956__-1__NC_000913__2515616__-1__3____300__300__0__1	max_left=290	max_left_minus=279	max_left_plus=290	max_min_left=130	max_min_left_minus=130	max_min_left_plus=130	max_min_right=142	max_min_right_minus=135	max_min_right_plus=142	max_pos_hash_score=584	max_right=296	max_right_minus=296	max_right_plus=292	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.91	new_junction_read_count=92	polymorphism_frequency=9.678e-01	pos_hash_score=55	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=285	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=3	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=89
JC	539	.	NC_000913	2290113	-1	NC_000913	3656652	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.944e-02	junction_possible_overlap_registers=294	key=NC_000913__2290113__-1__NC_000913__3656652__1__0____300__300__1__0	max_left=282	max_left_minus=282	max_left_plus=196	max_min_left=146	max_min_left_minus=146	max_min_left_plus=76	max_min_right=104	max_min_right_minus=89	max_min_right_plus=104	max_pos_hash_score=590	max_right=285	max_right_minus=277	max_right_plus=285	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.10	new_junction_read_count=10	polymorphism_frequency=6.944e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=10
JC	540	.	NC_000913	2521006	-1	NC_000913	2521127	1	0	alignment_overlap=76	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.719e-02	junction_possible_overlap_registers=218	key=NC_000913__2521006__-1__NC_000913__2521051__1__76____300__300__0__0	max_left=195	max_left_minus=195	max_left_plus=138	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=82	max_min_right_minus=29	max_min_right_plus=82	max_pos_hash_score=438	max_right=82	max_right_minus=29	max_right_plus=82	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.719e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=51	side_2_redundant=0	total_non_overlap_reads=4
JC	541	.	NC_000913	2521006	-1	NC_000913	2521249	1	0	alignment_overlap=76	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.933e-02	junction_possible_overlap_registers=218	key=NC_000913__2521006__-1__NC_000913__2521173__1__76____300__300__0__0	max_left=195	max_left_minus=161	max_left_plus=195	max_min_left=66	max_min_left_minus=0	max_min_left_plus=66	max_min_right=97	max_min_right_minus=97	max_min_right_plus=29	max_pos_hash_score=438	max_right=158	max_right_minus=97	max_right_plus=158	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.07	new_junction_read_count=5	polymorphism_frequency=7.933e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=5
JC	542	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=29	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=285	max_left_minus=269	max_left_plus=285	max_min_left=145	max_min_left_minus=145	max_min_left_plus=145	max_min_right=127	max_min_right_minus=119	max_min_right_plus=127	max_pos_hash_score=574	max_right=282	max_right_minus=282	max_right_plus=263	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.66	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=62
JC	543	.	NC_000913	2590458	1	NC_000913	4508679	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.075e-01	junction_possible_overlap_registers=294	key=NC_000913__2590458__1__NC_000913__4508679__-1__0____300__300__0__1	max_left=278	max_left_minus=278	max_left_plus=264	max_min_left=136	max_min_left_minus=136	max_min_left_plus=119	max_min_right=129	max_min_right_minus=111	max_min_right_plus=129	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=291	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.10	new_junction_read_count=10	polymorphism_frequency=1.075e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10
JC	544	.	NC_000913	2698402	1	NC_000913	4508679	-1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=8.065e-02	junction_possible_overlap_registers=292	key=NC_000913__2698400__1__NC_000913__4508679__-1__2____300__300__0__1	max_left=265	max_left_minus=198	max_left_plus=265	max_min_left=112	max_min_left_minus=55	max_min_left_plus=112	max_min_right=127	max_min_right_minus=100	max_min_right_plus=127	max_pos_hash_score=586	max_right=291	max_right_minus=242	max_right_plus=291	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.10	new_junction_read_count=10	polymorphism_frequency=8.065e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=114	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10
JC	545	.	NC_000913	2765412	1	NC_000913	2765418	-1	-1	alignment_overlap=-1	coverage_minus=6	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=1.308e-01	junction_possible_overlap_registers=293	key=NC_000913__2765412__1__NC_000913__2765418__-1__-1__A__300__300__0__0	max_left=227	max_left_minus=227	max_left_plus=0	max_min_left=113	max_min_left_minus=113	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=0	max_pos_hash_score=588	max_right=208	max_right_minus=208	max_right_plus=0	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=1.308e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.39	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.39	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=A
JC	546	.	NC_000913	2765412	1	NC_000913	2765419	-1	0	alignment_overlap=44	coverage_minus=57	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=250	key=NC_000913__2765412__1__NC_000913__2765463__-1__44____300__300__0__0	max_left=251	max_left_minus=220	max_left_plus=251	max_min_left=125	max_min_left_minus=125	max_min_left_plus=111	max_min_right=125	max_min_right_minus=121	max_min_right_plus=125	max_pos_hash_score=502	max_right=255	max_right_minus=255	max_right_plus=228	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.37	new_junction_read_count=120	polymorphism_frequency=8.301e-01	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.45	side_1_overlap=44	side_1_possible_overlap_registers=294	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.11	side_2_overlap=0	side_2_possible_overlap_registers=250	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=119
JC	547	.	NC_000913	2765420	1	NC_000913	2765426	-1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=6.472e-02	junction_possible_overlap_registers=293	key=NC_000913__2765420__1__NC_000913__2765426__-1__-1__A__300__300__0__0	max_left=202	max_left_minus=202	max_left_plus=0	max_min_left=136	max_min_left_minus=136	max_min_left_plus=0	max_min_right=97	max_min_right_minus=97	max_min_right_plus=0	max_pos_hash_score=588	max_right=178	max_right_minus=178	max_right_plus=0	neg_log10_pos_hash_p_value=9.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=6.472e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.42	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=A
JC	548	.	NC_000913	2999635	1	NC_000913	4508679	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=1.327e-01	junction_possible_overlap_registers=294	key=NC_000913__2999635__1__NC_000913__4508679__-1__0____300__300__0__1	max_left=294	max_left_minus=294	max_left_plus=292	max_min_left=111	max_min_left_minus=42	max_min_left_plus=111	max_min_right=118	max_min_right_minus=79	max_min_right_plus=118	max_pos_hash_score=590	max_right=294	max_right_minus=294	max_right_plus=190	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.13	new_junction_read_count=13	polymorphism_frequency=1.327e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=13
JC	549	.	NC_000913	3040632	1	NC_000913	4508679	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=8.791e-02	junction_possible_overlap_registers=294	key=NC_000913__3040632__1__NC_000913__4508679__-1__0____300__300__0__1	max_left=288	max_left_minus=288	max_left_plus=110	max_min_left=110	max_min_left_minus=83	max_min_left_plus=110	max_min_right=38	max_min_right_minus=38	max_min_right_plus=0	max_pos_hash_score=590	max_right=253	max_right_minus=222	max_right_plus=253	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=8.791e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=8
JC	550	.	NC_000913	3040633	-1	NC_000913	4507459	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.800e-01	junction_possible_overlap_registers=294	key=NC_000913__3040633__-1__NC_000913__4507459__1__0____300__300__0__1	max_left=270	max_left_minus=270	max_left_plus=231	max_min_left=99	max_min_left_minus=99	max_min_left_plus=87	max_min_right=137	max_min_right_minus=137	max_min_right_plus=76	max_pos_hash_score=590	max_right=279	max_right_minus=275	max_right_plus=279	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.18	new_junction_read_count=18	polymorphism_frequency=1.800e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	551	.	NC_000913	3132444	1	NC_000913	4507459	1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.863e-01	junction_possible_overlap_registers=294	key=NC_000913__3132444__1__NC_000913__4507459__1__0____300__300__0__1	max_left=291	max_left_minus=291	max_left_plus=234	max_min_left=106	max_min_left_minus=106	max_min_left_plus=83	max_min_right=150	max_min_right_minus=150	max_min_right_plus=112	max_pos_hash_score=590	max_right=284	max_right_minus=276	max_right_plus=284	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.19	new_junction_read_count=19	polymorphism_frequency=1.863e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19
JC	552	.	NC_000913	3151653	-1	NC_000913	4507459	1	0	alignment_overlap=1	coverage_minus=8	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.346e-01	junction_possible_overlap_registers=293	key=NC_000913__3151654__-1__NC_000913__4507459__1__1____300__300__0__1	max_left=270	max_left_minus=270	max_left_plus=39	max_min_left=112	max_min_left_minus=112	max_min_left_plus=39	max_min_right=99	max_min_right_minus=99	max_min_right_plus=0	max_pos_hash_score=588	max_right=288	max_right_minus=252	max_right_plus=288	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.14	new_junction_read_count=14	polymorphism_frequency=1.346e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=14
JC	553	.	NC_000913	3480265	-1	NC_000913	3480563	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.191e-02	junction_possible_overlap_registers=284	key=NC_000913__3480265__-1__NC_000913__3480553__1__10____300__300__0__0	max_left=211	max_left_minus=211	max_left_plus=197	max_min_left=14	max_min_left_minus=14	max_min_left_plus=14	max_min_right=93	max_min_right_minus=79	max_min_right_plus=93	max_pos_hash_score=570	max_right=211	max_right_minus=211	max_right_plus=211	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.191e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=4
JC	554	.	NC_000913	3536951	1	NC_000913	4508679	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=17	flanking_left=300	flanking_right=300	frequency=2.521e-01	junction_possible_overlap_registers=294	key=NC_000913__3536951__1__NC_000913__4508679__-1__0____300__300__0__1	max_left=287	max_left_minus=224	max_left_plus=287	max_min_left=139	max_min_left_minus=139	max_min_left_plus=83	max_min_right=139	max_min_right_minus=139	max_min_right_plus=118	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=253	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.29	new_junction_read_count=30	polymorphism_frequency=2.521e-01	pos_hash_score=20	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=29
JC	555	.	NC_000913	3547364	-1	NC_000913	3547668	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.949e-02	junction_possible_overlap_registers=284	key=NC_000913__3547364__-1__NC_000913__3547658__1__10____300__300__0__0	max_left=197	max_left_minus=197	max_left_plus=197	max_min_left=26	max_min_left_minus=26	max_min_left_plus=26	max_min_right=76	max_min_right_minus=76	max_min_right_plus=76	max_pos_hash_score=570	max_right=226	max_right_minus=226	max_right_plus=226	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.949e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=4
JC	556	.	NC_000913	3621836	-1	NC_000913	3622017	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.759e-01	junction_possible_overlap_registers=282	key=NC_000913__3621848__-1__NC_000913__3622017__1__12____300__300__1__0	max_left=196	max_left_minus=152	max_left_plus=196	max_min_left=71	max_min_left_minus=50	max_min_left_plus=71	max_min_right=137	max_min_right_minus=137	max_min_right_plus=92	max_pos_hash_score=566	max_right=238	max_right_minus=238	max_right_plus=217	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=6.759e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=12	side_2_possible_overlap_registers=294	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=4
JC	557	.	NC_000913	3622476	1	NC_000913	4507459	1	-125	alignment_overlap=-125	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.324e-01	junction_possible_overlap_registers=169	key=NC_000913__3622476__1__NC_000913__4507459__1__-125__GTGCCGGCGGGAATCCCCCACTGTGCATAGGCAACTCACGCTATGAACGCTTCAGCTTATCAATAGCGGAAGTTATAATTTCATTGTCATCAAACTTGTACAACATAGTATCTAAAACAGGAAGT__300__300__0__1	max_left=91	max_left_minus=77	max_left_plus=91	max_min_left=77	max_min_left_minus=77	max_min_left_plus=33	max_min_right=83	max_min_right_minus=0	max_min_right_plus=83	max_pos_hash_score=340	max_right=165	max_right_minus=165	max_right_plus=142	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.08	new_junction_read_count=5	polymorphism_frequency=1.324e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5	unique_read_sequence=GTGCCGGCGGGAATCCCCCACTGTGCATAGGCAACTCACGCTATGAACGCTTCAGCTTATCAATAGCGGAAGTTATAATTTCATTGTCATCAAACTTGTACAACATAGTATCTAAAACAGGAAGT
JC	558	.	NC_000913	3694072	-1	NC_000913	3694242	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.002e-02	junction_possible_overlap_registers=284	key=NC_000913__3694072__-1__NC_000913__3694232__1__10____300__300__0__0	max_left=105	max_left_minus=105	max_left_plus=47	max_min_left=105	max_min_left_minus=105	max_min_left_plus=47	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=268	max_right_minus=216	max_right_plus=268	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=5.002e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=5
JC	559	.	NC_000913	3764827	-1	NC_000913	3765008	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.733e-01	junction_possible_overlap_registers=282	key=NC_000913__3764839__-1__NC_000913__3765008__1__12____300__300__1__0	max_left=196	max_left_minus=152	max_left_plus=196	max_min_left=71	max_min_left_minus=50	max_min_left_plus=71	max_min_right=137	max_min_right_minus=137	max_min_right_plus=92	max_pos_hash_score=566	max_right=238	max_right_minus=238	max_right_plus=217	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.733e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=12	side_2_possible_overlap_registers=294	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=4
JC	560	.	NC_000913	3765467	1	NC_000913	4507459	1	-125	alignment_overlap=-125	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.266e-01	junction_possible_overlap_registers=169	key=NC_000913__3765467__1__NC_000913__4507459__1__-125__GTGCCGGCGGGAATCCCCCACTGTGCATAGGCAACTCACGCTATGAACGCTTCAGCTTATCAATAGCGGAAGTTATAATTTCATTGTCATCAAACTTGTACAACATAGTATCTAAAACAGGAAGT__300__300__0__1	max_left=91	max_left_minus=77	max_left_plus=91	max_min_left=77	max_min_left_minus=77	max_min_left_plus=33	max_min_right=83	max_min_right_minus=0	max_min_right_plus=83	max_pos_hash_score=340	max_right=165	max_right_minus=165	max_right_plus=142	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.08	new_junction_read_count=5	polymorphism_frequency=1.266e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5	unique_read_sequence=GTGCCGGCGGGAATCCCCCACTGTGCATAGGCAACTCACGCTATGAACGCTTCAGCTTATCAATAGCGGAAGTTATAATTTCATTGTCATCAAACTTGTACAACATAGTATCTAAAACAGGAAGT
JC	561	.	NC_000913	3767095	1	NC_000913	4507459	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=1.692e-01	junction_possible_overlap_registers=294	key=NC_000913__3767095__1__NC_000913__4507459__1__0____300__300__0__1	max_left=294	max_left_minus=294	max_left_plus=260	max_min_left=135	max_min_left_minus=135	max_min_left_plus=88	max_min_right=142	max_min_right_minus=98	max_min_right_plus=142	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=290	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.21	new_junction_read_count=22	polymorphism_frequency=1.692e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=22
JC	562	.	NC_000913	3978530	1	NC_000913	4507459	1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=29	flanking_left=300	flanking_right=300	frequency=6.364e-01	junction_possible_overlap_registers=294	key=NC_000913__3978530__1__NC_000913__4507459__1__0____300__300__0__1	max_left=285	max_left_minus=238	max_left_plus=285	max_min_left=133	max_min_left_minus=133	max_min_left_plus=131	max_min_right=146	max_min_right_minus=146	max_min_right_plus=140	max_pos_hash_score=590	max_right=284	max_right_minus=272	max_right_plus=284	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.48	new_junction_read_count=49	polymorphism_frequency=6.364e-01	pos_hash_score=34	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.27	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=48
JC	563	.	NC_000913	3978530	1	NC_000913	4508679	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=32	flanking_left=300	flanking_right=300	frequency=6.456e-01	junction_possible_overlap_registers=294	key=NC_000913__3978530__1__NC_000913__4508679__-1__0____300__300__0__1	max_left=273	max_left_minus=270	max_left_plus=273	max_min_left=148	max_min_left_minus=148	max_min_left_plus=121	max_min_right=136	max_min_right_minus=104	max_min_right_plus=136	max_pos_hash_score=590	max_right=288	max_right_minus=288	max_right_plus=278	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.50	new_junction_read_count=51	polymorphism_frequency=6.456e-01	pos_hash_score=36	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.27	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=50
JC	564	.	NC_000913	3978531	-1	NC_000913	4507459	1	0	alignment_overlap=2	coverage_minus=17	coverage_plus=18	flanking_left=300	flanking_right=300	frequency=5.902e-01	junction_possible_overlap_registers=292	key=NC_000913__3978533__-1__NC_000913__4507459__1__2____300__300__0__1	max_left=277	max_left_minus=239	max_left_plus=277	max_min_left=121	max_min_left_minus=108	max_min_left_plus=121	max_min_right=126	max_min_right_minus=122	max_min_right_plus=126	max_pos_hash_score=586	max_right=282	max_right_minus=274	max_right_plus=282	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.35	new_junction_read_count=36	polymorphism_frequency=5.902e-01	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.25	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=35
JC	565	.	NC_000913	3978531	-1	NC_000913	4508679	-1	0	alignment_overlap=2	coverage_minus=21	coverage_plus=31	flanking_left=300	flanking_right=300	frequency=6.795e-01	junction_possible_overlap_registers=292	key=NC_000913__3978533__-1__NC_000913__4508679__-1__2____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=271	max_min_left=148	max_min_left_minus=137	max_min_left_plus=148	max_min_right=139	max_min_right_minus=120	max_min_right_plus=139	max_pos_hash_score=586	max_right=274	max_right_minus=274	max_right_plus=251	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.52	new_junction_read_count=53	polymorphism_frequency=6.795e-01	pos_hash_score=35	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.25	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=52
JC	566	.	NC_000913	3993262	1	NC_000913	4507459	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=7.000e-02	junction_possible_overlap_registers=294	key=NC_000913__3993262__1__NC_000913__4507459__1__0____300__300__0__1	max_left=277	max_left_minus=263	max_left_plus=277	max_min_left=137	max_min_left_minus=0	max_min_left_plus=137	max_min_right=89	max_min_right_minus=37	max_min_right_plus=89	max_pos_hash_score=590	max_right=163	max_right_minus=37	max_right_plus=163	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=7.000e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	567	.	NC_000913	3993263	-1	NC_000913	4508679	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=8.654e-02	junction_possible_overlap_registers=294	key=NC_000913__3993263__-1__NC_000913__4508679__-1__0____300__300__0__1	max_left=291	max_left_minus=215	max_left_plus=291	max_min_left=109	max_min_left_minus=31	max_min_left_plus=109	max_min_right=136	max_min_right_minus=136	max_min_right_plus=30	max_pos_hash_score=590	max_right=277	max_right_minus=277	max_right_plus=260	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=8.654e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=9
JC	568	.	NC_000913	4000482	-1	NC_000913	4508679	-1	0	alignment_overlap=1	coverage_minus=13	coverage_plus=19	flanking_left=300	flanking_right=300	frequency=2.037e-01	junction_possible_overlap_registers=293	key=NC_000913__4000483__-1__NC_000913__4508679__-1__1____300__300__0__1	max_left=288	max_left_minus=283	max_left_plus=288	max_min_left=124	max_min_left_minus=124	max_min_left_plus=112	max_min_right=128	max_min_right_minus=78	max_min_right_plus=128	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=263	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.32	new_junction_read_count=33	polymorphism_frequency=2.037e-01	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.26	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=32
JC	569	.	NC_000913	4094350	-1	NC_000913	4094719	1	0	alignment_overlap=41	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.371e-02	junction_possible_overlap_registers=253	key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0	max_left=215	max_left_minus=215	max_left_plus=117	max_min_left=117	max_min_left_minus=0	max_min_left_plus=117	max_min_right=107	max_min_right_minus=107	max_min_right_plus=0	max_pos_hash_score=508	max_right=185	max_right_minus=107	max_right_plus=185	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.371e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=41	side_1_possible_overlap_registers=294	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.53	side_2_overlap=0	side_2_possible_overlap_registers=253	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=4
JC	570	.	NC_000913	4117984	1	NC_000913	4507459	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=7.447e-02	junction_possible_overlap_registers=292	key=NC_000913__4117982__1__NC_000913__4507459__1__2____300__300__0__1	max_left=210	max_left_minus=182	max_left_plus=210	max_min_left=96	max_min_left_minus=0	max_min_left_plus=96	max_min_right=115	max_min_right_minus=115	max_min_right_plus=87	max_pos_hash_score=586	max_right=287	max_right_minus=115	max_right_plus=287	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=7.447e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	571	.	NC_000913	4117984	1	NC_000913	4508679	-1	0	alignment_overlap=2	coverage_minus=23	coverage_plus=23	flanking_left=300	flanking_right=300	frequency=3.459e-01	junction_possible_overlap_registers=292	key=NC_000913__4117982__1__NC_000913__4508679__-1__2____300__300__0__1	max_left=291	max_left_minus=291	max_left_plus=288	max_min_left=144	max_min_left_minus=143	max_min_left_plus=144	max_min_right=143	max_min_right_minus=143	max_min_right_plus=127	max_pos_hash_score=586	max_right=296	max_right_minus=296	max_right_plus=245	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.45	new_junction_read_count=46	polymorphism_frequency=3.459e-01	pos_hash_score=28	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=46
JC	572	.	NC_000913	4123617	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__4123617__1__NC_000913__4498181__1__0____300__300__0__1	max_left=285	max_left_minus=285	max_left_plus=282	max_min_left=147	max_min_left_minus=140	max_min_left_plus=147	max_min_right=147	max_min_right_minus=135	max_min_right_plus=147	max_pos_hash_score=590	max_right=297	max_right_minus=283	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.95	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=98
JC	573	.	NC_000913	4123621	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=52	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__4123621__-1__NC_000913__4499511__-1__0____300__300__0__1	max_left=299	max_left_minus=299	max_left_plus=271	max_min_left=149	max_min_left_minus=149	max_min_left_plus=140	max_min_right=149	max_min_right_minus=144	max_min_right_plus=149	max_pos_hash_score=590	max_right=287	max_right_minus=287	max_right_plus=276	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.07	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=107
JC	574	.	NC_000913	4176887	-1	NC_000913	4177077	1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.234e-02	junction_possible_overlap_registers=281	key=NC_000913__4176900__-1__NC_000913__4177077__1__13____300__300__1__0	max_left=266	max_left_minus=266	max_left_plus=221	max_min_left=117	max_min_left_minus=0	max_min_left_plus=117	max_min_right=66	max_min_right_minus=21	max_min_right_plus=66	max_pos_hash_score=564	max_right=170	max_right_minus=21	max_right_plus=170	neg_log10_pos_hash_p_value=9.5	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.234e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=13	side_2_possible_overlap_registers=294	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3
JC	575	.	NC_000913	4349080	1	NC_000913	4508679	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=1.037e-01	junction_possible_overlap_registers=294	key=NC_000913__4349080__1__NC_000913__4508679__-1__0____300__300__0__1	max_left=266	max_left_minus=266	max_left_plus=221	max_min_left=148	max_min_left_minus=100	max_min_left_plus=148	max_min_right=134	max_min_right_minus=134	max_min_right_plus=94	max_pos_hash_score=590	max_right=288	max_right_minus=288	max_right_plus=277	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.17	new_junction_read_count=17	polymorphism_frequency=1.037e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.43	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=147	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=17
JC	576	.	NC_000913	4349081	-1	NC_000913	4507459	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=1.166e-01	junction_possible_overlap_registers=294	key=NC_000913__4349081__-1__NC_000913__4507459__1__0____300__300__0__1	max_left=287	max_left_minus=287	max_left_plus=183	max_min_left=113	max_min_left_minus=113	max_min_left_plus=89	max_min_right=135	max_min_right_minus=126	max_min_right_plus=135	max_pos_hash_score=590	max_right=284	max_right_minus=266	max_right_plus=284	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.19	new_junction_read_count=19	polymorphism_frequency=1.166e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.40	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=144	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19
JC	577	.	NC_000913	4392437	-1	NC_000913	4392661	1	0	alignment_overlap=78	coverage_minus=4	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.320e-01	junction_possible_overlap_registers=216	key=NC_000913__4392437__-1__NC_000913__4392583__1__78____300__300__0__0	max_left=138	max_left_minus=123	max_left_plus=138	max_min_left=50	max_min_left_minus=50	max_min_left_plus=11	max_min_right=107	max_min_right_minus=105	max_min_right_plus=107	max_pos_hash_score=434	max_right=211	max_right_minus=172	max_right_plus=211	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.13	new_junction_read_count=10	polymorphism_frequency=1.320e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=9
JC	578	.	NC_000913	4507459	1	NC_000913	4640419	-1	0	alignment_overlap=2	coverage_minus=77	coverage_plus=54	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__4507459__1__NC_000913__4640421__-1__2____300__300__1__0	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=146	max_min_left_minus=146	max_min_left_plus=142	max_min_right=149	max_min_right_minus=145	max_min_right_plus=149	max_pos_hash_score=586	max_right=295	max_right_minus=277	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.29	new_junction_read_count=132	polymorphism_frequency=9.924e-01	pos_hash_score=82	prediction=consensus	read_count_offset=2	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=131
JC	579	.	NC_000913	4508679	-1	NC_000913	4640418	1	0	alignment_overlap=1	coverage_minus=59	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__4508679__-1__NC_000913__4640417__1__1____300__300__1__0	max_left=297	max_left_minus=275	max_left_plus=297	max_min_left=149	max_min_left_minus=149	max_min_left_plus=137	max_min_right=145	max_min_right_minus=119	max_min_right_plus=145	max_pos_hash_score=588	max_right=292	max_right_minus=292	max_right_plus=288	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.96	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=2	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97
JC	580	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=4.451e-02	junction_possible_overlap_registers=285	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=253	max_left_minus=13	max_left_plus=253	max_min_left=119	max_min_left_minus=13	max_min_left_plus=119	max_min_right=87	max_min_right_minus=0	max_min_right_plus=87	max_pos_hash_score=572	max_right=277	max_right_minus=277	max_right_plus=172	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=4.451e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.40	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=144	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=6
JC	581	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=6	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=4.139e-02	junction_possible_overlap_registers=285	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=212	max_left_minus=212	max_left_plus=0	max_min_left=144	max_min_left_minus=144	max_min_left_plus=0	max_min_right=145	max_min_right_minus=145	max_min_right_plus=0	max_pos_hash_score=572	max_right=146	max_right_minus=146	max_right_plus=0	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=4.139e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.61	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=165	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=6
JC	582	.	NC_000913	4606140	-1	NC_000913	4606378	1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.431e-02	junction_possible_overlap_registers=293	key=NC_000913__4606140__-1__NC_000913__4606378__1__-1__A__300__300__0__0	max_left=282	max_left_minus=282	max_left_plus=184	max_min_left=71	max_min_left_minus=0	max_min_left_plus=71	max_min_right=148	max_min_right_minus=94	max_min_right_plus=148	max_pos_hash_score=588	max_right=228	max_right_minus=94	max_right_plus=228	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=7.431e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=A
UN	583	.	NC_000913	15655	15656
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UN	590	.	NC_000913	225327	225327
UN	591	.	NC_000913	225330	225330
UN	592	.	NC_000913	227273	228427
UN	593	.	NC_000913	257908	258683
UN	594	.	NC_000913	270791	271007
UN	595	.	NC_000913	271009	271009
UN	596	.	NC_000913	271011	271011
UN	597	.	NC_000913	271018	271018
UN	598	.	NC_000913	271020	271020
UN	599	.	NC_000913	274248	274863
UN	600	.	NC_000913	279448	279658
UN	601	.	NC_000913	290918	291128
UN	602	.	NC_000913	315510	316215
UN	603	.	NC_000913	316218	316218
UN	604	.	NC_000913	366181	366273
UN	605	.	NC_000913	381513	381513
UN	606	.	NC_000913	381521	382314
UN	607	.	NC_000913	391984	392688
UN	608	.	NC_000913	392691	392691
UN	609	.	NC_000913	392697	392697
UN	610	.	NC_000913	392699	392699
UN	611	.	NC_000913	526107	526451
UN	612	.	NC_000913	567034	567034
UN	613	.	NC_000913	567042	567764
UN	614	.	NC_000913	574869	575503
UN	615	.	NC_000913	608298	609089
UN	616	.	NC_000913	609097	609097
UN	617	.	NC_000913	688131	688759
UN	618	.	NC_000913	1094528	1095224
UN	619	.	NC_000913	1095228	1095228
UN	620	.	NC_000913	1095245	1095245
UN	621	.	NC_000913	1196370	1211413
UN	622	.	NC_000913	1299499	1300697
UN	623	.	NC_000913	1396315	1396315
UN	624	.	NC_000913	1396321	1396968
UN	625	.	NC_000913	1468180	1468954
UN	626	.	NC_000913	1469564	1470226
UN	627	.	NC_000913	1528580	1528581
UN	628	.	NC_000913	1528583	1528584
UN	629	.	NC_000913	1528586	1528587
UN	630	.	NC_000913	1528589	1528590
UN	631	.	NC_000913	1528592	1528923
UN	632	.	NC_000913	1528925	1528928
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UN	634	.	NC_000913	1651113	1651284
UN	635	.	NC_000913	1651290	1651290
UN	636	.	NC_000913	1978503	1979278
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UN	638	.	NC_000913	2069217	2069217
UN	639	.	NC_000913	2069219	2069985
UN	640	.	NC_000913	2069991	2069991
UN	641	.	NC_000913	2070001	2070001
UN	642	.	NC_000913	2102014	2102014
UN	643	.	NC_000913	2102018	2102663
UN	644	.	NC_000913	2170428	2170428
UN	645	.	NC_000913	2170437	2170438
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UN	647	.	NC_000913	2171144	2171144
UN	648	.	NC_000913	2289193	2289193
UN	649	.	NC_000913	2289198	2289827
UN	650	.	NC_000913	2514537	2514537
UN	651	.	NC_000913	2514540	2515359
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UN	653	.	NC_000913	2726336	2729010
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UN	655	.	NC_000913	2822736	2829588
UN	656	.	NC_000913	2996636	2997405
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UN	659	.	NC_000913	3130426	3131066
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UN	661	.	NC_000913	3131072	3131072
UN	662	.	NC_000913	3131075	3131075
UN	663	.	NC_000913	3186385	3187146
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UN	669	.	NC_000913	3427216	3428292
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UN	673	.	NC_000913	3620821	3620821
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UN	675	.	NC_000913	3621340	3622057
UN	676	.	NC_000913	3652313	3652966
UN	677	.	NC_000913	3652970	3652970
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UN	679	.	NC_000913	3762537	3762537
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UN	697	.	NC_000913	4038408	4038408
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UN	700	.	NC_000913	4039645	4039645
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UN	703	.	NC_000913	4166551	4166570
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UN	706	.	NC_000913	4176835	4176837
UN	707	.	NC_000913	4176839	4176839
UN	708	.	NC_000913	4176841	4176841
UN	709	.	NC_000913	4176845	4176845
UN	710	.	NC_000913	4176848	4176849
UN	711	.	NC_000913	4208390	4209503
UN	712	.	NC_000913	4209511	4209511
UN	713	.	NC_000913	4210304	4212845
UN	714	.	NC_000913	4212849	4212849
UN	715	.	NC_000913	4498476	4499231
UN	716	.	NC_000913	4507747	4508411
UN	717	.	NC_000913	4508422	4508422
UN	718	.	NC_000913	4508425	4508425