#=GENOME_DIFF 1.0 #=CREATED 13:45:11 22 Dec 2025 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG_16samples-rerun/ME9016_S28_R1R2_RMDUP_BOTH-RM1andRM2-DUP.cutadapt -r /ld1/E.coli_BL21_DE3_ref/ncbi_dataset/data/GCF_000022665.1/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9016_S28_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9016_S28_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=REFSEQ /ld1/E.coli_BL21_DE3_ref/ncbi_dataset/data/GCF_000022665.1/genomic.gbff #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9016_S28_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9016_S28_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=CONVERTED-BASES 473475962 #=CONVERTED-READS 1602161 #=INPUT-BASES 473599250 #=INPUT-READS 1602582 #=MAPPED-BASES 450397744 #=MAPPED-READS 1525108 SNP 1 125 NC_012971 226969 A SNP 2 129 NC_012971 405802 T SNP 3 131 NC_012971 519071 A SNP 4 132 NC_012971 537641 A SNP 5 134 NC_012971 550505 T DEL 6 135 NC_012971 550507 1 SNP 7 136 NC_012971 550515 T SNP 8 137 NC_012971 550524 A SNP 9 138 NC_012971 550663 A SNP 10 139 NC_012971 550708 C SNP 11 140 NC_012971 550712 T SNP 12 141 NC_012971 550798 T SNP 13 142 NC_012971 550888 A SNP 14 143 NC_012971 550900 T SNP 15 144 NC_012971 550927 A SNP 16 145 NC_012971 550939 A SNP 17 146 NC_012971 550945 A SNP 18 147 NC_012971 550988 C SNP 19 148 NC_012971 642526 T DEL 20 447,476 NC_012971 748650 4449 SNP 21 154 NC_012971 753173 A SNP 22 155 NC_012971 753248 C SNP 23 156 NC_012971 753262 C SNP 24 157 NC_012971 753271 T SNP 25 158 NC_012971 753513 G SNP 26 159 NC_012971 753674 C SNP 27 160 NC_012971 753778 G SNP 28 161 NC_012971 753860 G SNP 29 162 NC_012971 754025 T SNP 30 163 NC_012971 754080 T SNP 31 164 NC_012971 754104 A SNP 32 165 NC_012971 754122 G SNP 33 166 NC_012971 754125 C SNP 34 167 NC_012971 754158 G SNP 35 168 NC_012971 754170 A SNP 36 169 NC_012971 754247 A SNP 37 170 NC_012971 754286 T SNP 38 171 NC_012971 754371 T SNP 39 172 NC_012971 754386 A SNP 40 175 NC_012971 762867 G SNP 41 176 NC_012971 762873 C SNP 42 177 NC_012971 762885 G SNP 43 178 NC_012971 762888 C SNP 44 179 NC_012971 762894 T SNP 45 180 NC_012971 762897 C SNP 46 181 NC_012971 762903 A DEL 47 182 NC_012971 762906 1 SUB 48 183,184 NC_012971 762911 1 TG SNP 49 185 NC_012971 762918 C SNP 50 186 NC_012971 762922 C SNP 51 187 NC_012971 762945 A SNP 52 188 NC_012971 763051 T SNP 53 189 NC_012971 763103 G SNP 54 190 NC_012971 763115 A SNP 55 191 NC_012971 763117 A SNP 56 192 NC_012971 763131 G SNP 57 193 NC_012971 763139 T SNP 58 194 NC_012971 763145 C SNP 59 195 NC_012971 763166 T SNP 60 196 NC_012971 763181 G SNP 61 212 NC_012971 767828 C SNP 62 213 NC_012971 767830 A SNP 63 214 NC_012971 767851 G SNP 64 215 NC_012971 767863 C SNP 65 216 NC_012971 767869 A SNP 66 217 NC_012971 767872 A SNP 67 218 NC_012971 767884 G SNP 68 219 NC_012971 767889 C SNP 69 220 NC_012971 767934 C SNP 70 223 NC_012971 791198 T SNP 71 224 NC_012971 791250 T SNP 72 227 NC_012971 855155 A SNP 73 228 NC_012971 862724 C SNP 74 230 NC_012971 931389 T SNP 75 231 NC_012971 992215 T SNP 76 232 NC_012971 1002731 A SNP 77 234 NC_012971 1026045 G SNP 78 235 NC_012971 1100143 A SNP 79 237 NC_012971 1137851 C SNP 80 239 NC_012971 1173770 A SNP 81 241 NC_012971 1308529 A SNP 82 245 NC_012971 1384274 G SNP 83 283 NC_012971 1527829 G SNP 84 284 NC_012971 1544449 T SNP 85 285 NC_012971 1559313 T SNP 86 286 NC_012971 1814885 T SNP 87 287 NC_012971 1822910 C SNP 88 288 NC_012971 1834871 A SNP 89 291 NC_012971 1949161 G SNP 90 292 NC_012971 1973596 C SNP 91 294 NC_012971 2007879 T DEL 92 452,481 NC_012971 2068532 776 SNP 93 304 NC_012971 2075017 C INS 94 482 NC_012971 2135130 GACAT SUB 95 306,307 NC_012971 2227497 2 AA SUB 96 308,309 NC_012971 2275119 2 TG SNP 97 313 NC_012971 2356080 T SNP 98 314 NC_012971 2477975 C DEL 99 453,483 NC_012971 2517851 1445 SNP 100 315 NC_012971 2567019 T SNP 101 317 NC_012971 2764352 T DEL 102 454,494 NC_012971 2820977 1446 SNP 103 318 NC_012971 2879376 A SNP 104 319 NC_012971 2880243 T SNP 105 320 NC_012971 2880800 C SNP 106 323 NC_012971 2891803 A SNP 107 324 NC_012971 2891814 C SNP 108 325 NC_012971 2900353 G SNP 109 328 NC_012971 3162393 T SUB 110 329,330 NC_012971 3197975 2 GT SNP 111 332 NC_012971 3443292 A SNP 112 361 NC_012971 3496959 T SNP 113 433 NC_012971 3733869 G SNP 114 434 NC_012971 3757620 A SNP 115 436 NC_012971 3817054 C DEL 116 456,502 NC_012971 3822341 1441 SNP 117 437 NC_012971 3997577 G SNP 118 439 NC_012971 4072111 C SNP 119 440 NC_012971 4108278 T DEL 120 441 NC_012971 4179097 1 SNP 121 444 NC_012971 4395355 T RA 122 . NC_012971 36 0 C A bias_e_value=2.30679 bias_p_value=5.05991e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=246.2 fisher_strand_p_value=2.74851e-08 frequency=2.564e-01 ks_quality_p_value=1 major_base=C major_cov=62/25 major_frequency=7.436e-01 minor_base=A minor_cov=4/26 new_cov=4/26 polymorphism_frequency=2.564e-01 polymorphism_score=28.7 prediction=polymorphism ref_cov=62/25 total_cov=66/51 RA 123 . NC_012971 12150 0 G T bias_e_value=0.542029 bias_p_value=1.18893e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=124.7 fisher_strand_p_value=5.96326e-09 frequency=4.019e-01 ks_quality_p_value=1 major_base=G major_cov=30/34 major_frequency=5.981e-01 minor_base=T minor_cov=0/43 new_cov=0/43 polymorphism_frequency=4.019e-01 polymorphism_score=19.2 prediction=polymorphism ref_cov=30/34 total_cov=30/77 RA 124 . NC_012971 144653 0 C A bias_e_value=0.000280653 bias_p_value=6.15608e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=225.7 fisher_strand_p_value=2.21144e-12 frequency=2.977e-01 ks_quality_p_value=1 major_base=C major_cov=37/55 major_frequency=7.023e-01 minor_base=A minor_cov=39/0 new_cov=39/0 polymorphism_frequency=2.977e-01 polymorphism_score=15.6 prediction=polymorphism ref_cov=37/55 total_cov=76/55 RA 125 . NC_012971 226969 0 G A consensus_score=93.9 frequency=1 major_base=A major_cov=34/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/18 RA 126 . NC_012971 284777 0 G T bias_e_value=0.000202348 bias_p_value=4.43847e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=230.2 fisher_strand_p_value=1.57523e-12 frequency=2.773e-01 ks_quality_p_value=1 major_base=G major_cov=57/29 major_frequency=7.227e-01 minor_base=T minor_cov=0/33 new_cov=0/33 polymorphism_frequency=2.773e-01 polymorphism_score=14.9 prediction=polymorphism ref_cov=57/29 total_cov=57/62 RA 127 . NC_012971 302603 0 C A bias_e_value=0.0155921 bias_p_value=3.4201e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=163.6 fisher_strand_p_value=1.44569e-10 frequency=3.458e-01 ks_quality_p_value=1 major_base=C major_cov=30/40 major_frequency=6.542e-01 minor_base=A minor_cov=37/0 new_cov=37/0 polymorphism_frequency=3.458e-01 polymorphism_score=10.9 prediction=polymorphism ref_cov=30/40 total_cov=67/40 RA 128 . NC_012971 318708 0 C A bias_e_value=1.23061 bias_p_value=2.69932e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=191.2 fisher_strand_p_value=1.41523e-08 frequency=2.762e-01 ks_quality_p_value=1 major_base=C major_cov=34/42 major_frequency=7.238e-01 minor_base=A minor_cov=29/0 new_cov=29/0 polymorphism_frequency=2.762e-01 polymorphism_score=11.0 prediction=polymorphism ref_cov=34/42 total_cov=63/42 RA 129 . NC_012971 405802 0 G T bias_e_value=4558950 bias_p_value=1 consensus_score=317.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99975 major_base=T major_cov=48/41 major_frequency=9.889e-01 minor_base=C minor_cov=1/0 new_cov=48/41 polymorphism_frequency=9.889e-01 polymorphism_score=-6.0 prediction=consensus ref_cov=0/0 total_cov=49/41 RA 130 . NC_012971 479356 0 C A bias_e_value=446.107 bias_p_value=9.78529e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=142.5 fisher_strand_p_value=7.65677e-06 frequency=2.500e-01 ks_quality_p_value=1 major_base=C major_cov=28/32 major_frequency=7.500e-01 minor_base=A minor_cov=20/0 new_cov=20/0 polymorphism_frequency=2.500e-01 polymorphism_score=11.5 prediction=polymorphism ref_cov=28/32 total_cov=48/32 RA 131 . NC_012971 519071 0 G A consensus_score=154.3 frequency=1 major_base=A major_cov=24/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/21 RA 132 . NC_012971 537641 0 G A bias_e_value=3722100 bias_p_value=0.816438 consensus_score=427.9 fisher_strand_p_value=0.459016 frequency=1 ks_quality_p_value=1 major_base=A major_cov=55/66 major_frequency=9.918e-01 minor_base=C minor_cov=1/0 new_cov=55/66 polymorphism_frequency=9.918e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/66 RA 133 . NC_012971 543888 0 G T bias_e_value=4558950 bias_p_value=1 consensus_score=41.8 deleted=1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=7/10 major_frequency=9.444e-01 minor_base=G minor_cov=0/1 new_cov=7/10 polymorphism_frequency=9.444e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=7/11 RA 134 . NC_012971 550505 0 G T bias_e_value=4558950 bias_p_value=1 consensus_score=50.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=12/4 major_frequency=9.412e-01 minor_base=C minor_cov=1/0 new_cov=12/4 polymorphism_frequency=9.412e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/4 RA 135 . NC_012971 550507 0 T . bias_e_value=4557020 bias_p_value=0.999576 consensus_score=67.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.971017 major_base=. major_cov=12/4 major_frequency=9.412e-01 minor_base=A minor_cov=1/0 new_cov=12/4 polymorphism_frequency=9.412e-01 polymorphism_score=-2.1 prediction=consensus ref_cov=0/0 total_cov=13/4 RA 136 . NC_012971 550515 0 C T consensus_score=47.3 frequency=1 major_base=T major_cov=11/4 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/4 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/4 RA 137 . NC_012971 550524 0 G A consensus_score=34.4 frequency=1 major_base=A major_cov=9/4 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=9/4 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=9/4 RA 138 . NC_012971 550663 0 G A consensus_score=218.1 frequency=1 major_base=A major_cov=46/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/20 RA 139 . NC_012971 550708 0 T C bias_e_value=3455610 bias_p_value=0.757984 consensus_score=312.8 fisher_strand_p_value=0.390805 frequency=1 ks_quality_p_value=1 major_base=C major_cov=53/33 major_frequency=9.885e-01 minor_base=T minor_cov=0/1 new_cov=53/33 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=53/34 RA 140 . NC_012971 550712 0 C T consensus_score=302.1 frequency=1 major_base=T major_cov=53/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/34 RA 141 . NC_012971 550798 0 A T bias_e_value=1651150 bias_p_value=0.362178 consensus_score=491.5 fisher_strand_p_value=0.114286 frequency=1 ks_quality_p_value=1 major_base=T major_cov=93/46 major_frequency=9.858e-01 minor_base=C minor_cov=0/2 new_cov=93/46 polymorphism_frequency=9.858e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=93/49 RA 142 . NC_012971 550888 0 G A bias_e_value=4558950 bias_p_value=1 consensus_score=449.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=85/46 major_frequency=9.924e-01 minor_base=C minor_cov=1/0 new_cov=85/46 polymorphism_frequency=9.924e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=86/46 RA 143 . NC_012971 550900 0 C T consensus_score=485.2 frequency=1 major_base=T major_cov=87/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=87/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=87/47 RA 144 . NC_012971 550927 0 G A consensus_score=460.8 frequency=1 major_base=A major_cov=89/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=89/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=89/46 RA 145 . NC_012971 550939 0 C A consensus_score=442.4 frequency=1 major_base=A major_cov=82/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=82/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=82/48 RA 146 . NC_012971 550945 0 T A bias_e_value=3480640 bias_p_value=0.763474 consensus_score=416.3 fisher_strand_p_value=0.396694 frequency=1 ks_quality_p_value=1 major_base=A major_cov=73/47 major_frequency=9.917e-01 minor_base=C minor_cov=0/1 new_cov=73/47 polymorphism_frequency=9.917e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=73/48 RA 147 . NC_012971 550988 0 A C bias_e_value=133216 bias_p_value=0.0292208 consensus_score=350.4 fisher_strand_p_value=0.00458644 frequency=1 ks_quality_p_value=0.997489 major_base=C major_cov=57/45 major_frequency=8.718e-01 minor_base=A minor_cov=14/1 new_cov=57/45 polymorphism_frequency=8.718e-01 polymorphism_score=26.3 prediction=consensus ref_cov=14/1 total_cov=71/46 RA 148 . NC_012971 642526 0 A T consensus_score=245.1 frequency=1 major_base=T major_cov=36/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/37 RA 149 . NC_012971 689994 0 C G bias_e_value=4536350 bias_p_value=0.995042 consensus_reject=FREQUENCY_CUTOFF consensus_score=52.8 fisher_strand_p_value=1 frequency=3.585e-01 ks_quality_p_value=0.902088 major_base=C major_cov=20/14 major_frequency=6.415e-01 minor_base=G minor_cov=11/8 new_cov=11/8 polymorphism_frequency=3.585e-01 polymorphism_score=60.7 prediction=polymorphism ref_cov=20/14 total_cov=31/22 RA 150 . NC_012971 689997 0 C T bias_e_value=4558950 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=49.3 fisher_strand_p_value=1 frequency=3.585e-01 ks_quality_p_value=1 major_base=C major_cov=20/14 major_frequency=6.415e-01 minor_base=T minor_cov=11/8 new_cov=11/8 polymorphism_frequency=3.585e-01 polymorphism_score=54.1 prediction=polymorphism ref_cov=20/14 total_cov=31/22 RA 151 . NC_012971 690002 0 A G bias_e_value=4556820 bias_p_value=0.999532 consensus_reject=FREQUENCY_CUTOFF consensus_score=49.8 fisher_strand_p_value=1 frequency=3.585e-01 ks_quality_p_value=0.969571 major_base=A major_cov=20/14 major_frequency=6.415e-01 minor_base=G minor_cov=11/8 new_cov=11/8 polymorphism_frequency=3.585e-01 polymorphism_score=52.8 prediction=polymorphism ref_cov=20/14 total_cov=31/22 RA 152 . NC_012971 690056 0 C A bias_e_value=4558950 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=53.3 fisher_strand_p_value=1 frequency=3.276e-01 ks_quality_p_value=1 major_base=C major_cov=24/15 major_frequency=6.724e-01 minor_base=A minor_cov=11/8 new_cov=11/8 polymorphism_frequency=3.276e-01 polymorphism_score=40.4 prediction=polymorphism ref_cov=24/15 total_cov=35/23 RA 153 . NC_012971 690120 0 A G bias_e_value=2670420 bias_p_value=0.585753 consensus_reject=FREQUENCY_CUTOFF consensus_score=65.8 fisher_strand_p_value=0.242282 frequency=2.045e-01 ks_quality_p_value=1 major_base=A major_cov=23/12 major_frequency=7.955e-01 minor_base=G minor_cov=8/1 new_cov=8/1 polymorphism_frequency=2.045e-01 polymorphism_score=15.4 prediction=polymorphism ref_cov=23/12 total_cov=31/13 RA 154 . NC_012971 753173 0 G A consensus_score=393.7 frequency=1 major_base=A major_cov=69/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=69/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/50 RA 155 . NC_012971 753248 0 T C bias_e_value=3782880 bias_p_value=0.82977 consensus_score=474.5 fisher_strand_p_value=0.476562 frequency=1 ks_quality_p_value=1 major_base=C major_cov=67/60 major_frequency=9.922e-01 minor_base=T minor_cov=0/1 new_cov=67/60 polymorphism_frequency=9.922e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=67/62 RA 156 . NC_012971 753262 0 T C bias_e_value=4558950 bias_p_value=1 consensus_score=478.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=70/60 major_frequency=9.924e-01 minor_base=A minor_cov=1/0 new_cov=70/60 polymorphism_frequency=9.924e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=71/60 RA 157 . NC_012971 753271 0 C T bias_e_value=4558950 bias_p_value=1 consensus_score=427.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=61/60 major_frequency=9.837e-01 minor_base=G minor_cov=1/1 new_cov=61/60 polymorphism_frequency=9.837e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/0 total_cov=62/61 RA 158 . NC_012971 753513 0 T G bias_e_value=2681500 bias_p_value=0.588183 consensus_score=464.5 fisher_strand_p_value=0.244 frequency=1 ks_quality_p_value=1 major_base=G major_cov=63/60 major_frequency=9.840e-01 minor_base=T minor_cov=0/2 new_cov=63/60 polymorphism_frequency=9.840e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=63/62 RA 159 . NC_012971 753674 0 A C consensus_score=434.1 frequency=1 major_base=C major_cov=64/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=64/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/52 RA 160 . NC_012971 753778 0 A G consensus_score=409.5 frequency=1 major_base=G major_cov=53/57 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/57 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/57 RA 161 . NC_012971 753860 0 A G bias_e_value=2677400 bias_p_value=0.587284 consensus_score=401.6 fisher_strand_p_value=0.243363 frequency=1 ks_quality_p_value=1 major_base=G major_cov=57/54 major_frequency=9.823e-01 minor_base=T minor_cov=0/2 new_cov=57/54 polymorphism_frequency=9.823e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/56 RA 162 . NC_012971 754025 0 C T consensus_score=408.7 frequency=1 major_base=T major_cov=54/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/61 RA 163 . NC_012971 754080 0 C T consensus_score=393.7 frequency=1 major_base=T major_cov=53/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/60 RA 164 . NC_012971 754104 0 T A consensus_score=405.8 frequency=1 major_base=A major_cov=54/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/62 RA 165 . NC_012971 754122 0 C G consensus_score=404.2 frequency=1 major_base=G major_cov=51/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/55 RA 166 . NC_012971 754125 0 A C consensus_score=400.1 frequency=1 major_base=C major_cov=51/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/55 RA 167 . NC_012971 754158 0 A G bias_e_value=4558950 bias_p_value=1 consensus_score=394.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=51/52 major_frequency=9.904e-01 minor_base=T minor_cov=0/1 new_cov=51/52 polymorphism_frequency=9.904e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/53 RA 168 . NC_012971 754170 0 T A consensus_score=375.4 frequency=1 major_base=A major_cov=52/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/51 RA 169 . NC_012971 754247 0 C A consensus_score=314.6 frequency=1 major_base=A major_cov=47/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/43 RA 170 . NC_012971 754286 0 C T consensus_score=267.4 frequency=1 major_base=T major_cov=42/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/38 RA 171 . NC_012971 754371 0 C T consensus_score=164.3 frequency=1 major_base=T major_cov=28/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/22 RA 172 . NC_012971 754386 0 T A consensus_score=121.2 frequency=1 major_base=A major_cov=23/13 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/13 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/13 RA 173 . NC_012971 754430 0 C T consensus_score=85.3 deleted=1 frequency=1 major_base=T major_cov=15/11 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/11 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/11 RA 174 . NC_012971 754454 0 T G consensus_score=85.8 deleted=1 frequency=1 major_base=G major_cov=14/10 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=14/10 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/10 RA 175 . NC_012971 762867 0 T G consensus_score=413.0 frequency=1 major_base=G major_cov=49/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/59 RA 176 . NC_012971 762873 0 T C bias_e_value=3703100 bias_p_value=0.812271 consensus_score=399.5 fisher_strand_p_value=0.453704 frequency=1 ks_quality_p_value=1 major_base=C major_cov=48/59 major_frequency=9.907e-01 minor_base=A minor_cov=1/0 new_cov=48/59 polymorphism_frequency=9.907e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/59 RA 177 . NC_012971 762885 0 C G consensus_score=392.5 frequency=1 major_base=G major_cov=46/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/59 RA 178 . NC_012971 762888 0 T C consensus_score=381.0 frequency=1 major_base=C major_cov=46/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/53 RA 179 . NC_012971 762894 0 C T consensus_score=342.2 frequency=1 major_base=T major_cov=46/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/51 RA 180 . NC_012971 762897 0 A C consensus_score=360.3 frequency=1 major_base=C major_cov=46/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/50 RA 181 . NC_012971 762903 0 G A consensus_score=323.7 frequency=1 major_base=A major_cov=43/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/48 RA 182 . NC_012971 762905 0 T . bias_e_value=4558950 bias_p_value=1 consensus_score=344.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=37/42 major_frequency=8.681e-01 minor_base=T minor_cov=6/6 new_cov=37/42 polymorphism_frequency=8.681e-01 polymorphism_score=53.6 prediction=consensus ref_cov=6/6 total_cov=43/48 RA 183 . NC_012971 762910 1 . T consensus_score=326.8 frequency=1 major_base=T major_cov=43/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/48 RA 184 . NC_012971 762911 0 A G consensus_score=346.3 frequency=1 major_base=G major_cov=43/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/48 RA 185 . NC_012971 762918 0 T C consensus_score=417.9 frequency=1 major_base=C major_cov=58/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/52 RA 186 . NC_012971 762922 0 A C consensus_score=414.0 frequency=1 major_base=C major_cov=58/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/52 RA 187 . NC_012971 762945 0 C A consensus_score=376.5 frequency=1 major_base=A major_cov=57/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=57/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/54 RA 188 . NC_012971 763051 0 G T consensus_score=322.1 frequency=1 major_base=T major_cov=54/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/46 RA 189 . NC_012971 763103 0 T G bias_e_value=3710220 bias_p_value=0.813831 consensus_score=261.0 fisher_strand_p_value=0.457831 frequency=1 ks_quality_p_value=0.995309 major_base=G major_cov=45/37 major_frequency=9.880e-01 minor_base=A minor_cov=0/1 new_cov=45/37 polymorphism_frequency=9.880e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/0 total_cov=45/38 RA 190 . NC_012971 763115 0 G A consensus_score=187.2 frequency=1 major_base=A major_cov=40/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/27 RA 191 . NC_012971 763117 0 C A consensus_score=189.2 frequency=1 major_base=A major_cov=40/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/27 RA 192 . NC_012971 763131 0 C G consensus_score=187.3 frequency=1 major_base=G major_cov=37/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/26 RA 193 . NC_012971 763139 0 C T consensus_score=177.8 frequency=1 major_base=T major_cov=37/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/24 RA 194 . NC_012971 763145 0 A C consensus_score=167.9 frequency=1 major_base=C major_cov=36/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/23 RA 195 . NC_012971 763166 0 C T consensus_score=131.1 frequency=1 major_base=T major_cov=30/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/18 RA 196 . NC_012971 763181 0 A G consensus_score=126.8 frequency=1 major_base=G major_cov=28/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/18 RA 197 . NC_012971 763190 0 T A consensus_score=68.1 deleted=1 frequency=1 major_base=A major_cov=16/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/15 RA 198 . NC_012971 763191 0 C A consensus_score=70.0 deleted=1 frequency=1 major_base=A major_cov=16/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/15 RA 199 . NC_012971 763193 0 T C consensus_score=71.9 deleted=1 frequency=1 major_base=C major_cov=16/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/15 RA 200 . NC_012971 763199 0 T C consensus_score=65.2 deleted=1 frequency=1 major_base=C major_cov=16/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/15 RA 201 . NC_012971 763200 0 A G bias_e_value=4558950 bias_p_value=1 consensus_score=68.2 deleted=1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=15/15 major_frequency=9.677e-01 minor_base=A minor_cov=1/0 new_cov=15/15 polymorphism_frequency=9.677e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=16/15 RA 202 . NC_012971 763202 0 C T consensus_score=68.2 deleted=1 frequency=1 major_base=T major_cov=16/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/15 RA 203 . NC_012971 763205 0 A T consensus_score=67.6 deleted=1 frequency=1 major_base=T major_cov=16/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/15 RA 204 . NC_012971 763238 0 T C consensus_score=43.9 deleted=1 frequency=1 major_base=C major_cov=13/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/9 RA 205 . NC_012971 763247 0 G A consensus_score=41.1 deleted=1 frequency=1 major_base=A major_cov=12/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/9 RA 206 . NC_012971 763266 0 A G consensus_score=38.6 deleted=1 frequency=1 major_base=G major_cov=12/8 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/8 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/8 RA 207 . NC_012971 763277 0 C T consensus_score=20.4 deleted=1 frequency=1 major_base=T major_cov=7/6 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/6 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/6 RA 208 . NC_012971 767766 0 A C consensus_score=10.5 deleted=1 frequency=1 major_base=C major_cov=0/5 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=0/5 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=0/5 RA 209 . NC_012971 767788 0 T G consensus_score=93.0 deleted=1 frequency=1 major_base=G major_cov=2/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=2/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=2/26 RA 210 . NC_012971 767792 0 A G bias_e_value=4558950 bias_p_value=1 consensus_score=88.5 deleted=1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=2/24 major_frequency=9.286e-01 minor_base=T minor_cov=0/2 new_cov=2/24 polymorphism_frequency=9.286e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=2/26 RA 211 . NC_012971 767800 0 T G consensus_score=84.7 deleted=1 frequency=1 major_base=G major_cov=4/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=4/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=4/26 RA 212 . NC_012971 767828 0 A C consensus_score=174.0 frequency=1 major_base=C major_cov=15/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/34 RA 213 . NC_012971 767830 0 G A consensus_score=175.7 frequency=1 major_base=A major_cov=15/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/34 RA 214 . NC_012971 767851 0 A G bias_e_value=3005000 bias_p_value=0.659143 consensus_score=173.8 fisher_strand_p_value=0.320755 frequency=1 ks_quality_p_value=0.930002 major_base=G major_cov=16/36 major_frequency=9.811e-01 minor_base=A minor_cov=1/0 new_cov=16/36 polymorphism_frequency=9.811e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/0 total_cov=17/37 RA 215 . NC_012971 767863 0 A C consensus_score=206.6 frequency=1 major_base=C major_cov=19/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/37 RA 216 . NC_012971 767869 0 G A consensus_score=205.5 frequency=1 major_base=A major_cov=19/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/38 RA 217 . NC_012971 767872 0 G A consensus_score=200.8 frequency=1 major_base=A major_cov=19/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/38 RA 218 . NC_012971 767884 0 T G bias_e_value=4558950 bias_p_value=1 consensus_score=230.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=25/42 major_frequency=9.853e-01 minor_base=A minor_cov=0/1 new_cov=25/42 polymorphism_frequency=9.853e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/43 RA 219 . NC_012971 767889 0 T C consensus_score=254.4 frequency=1 major_base=C major_cov=25/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/43 RA 220 . NC_012971 767934 0 T C bias_e_value=2106400 bias_p_value=0.462036 consensus_score=302.3 fisher_strand_p_value=0.164855 frequency=1 ks_quality_p_value=1 major_base=C major_cov=32/49 major_frequency=9.759e-01 minor_base=A minor_cov=2/0 new_cov=32/49 polymorphism_frequency=9.759e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=34/50 RA 221 . NC_012971 791152 0 A G consensus_score=46.6 deleted=1 frequency=1 major_base=G major_cov=7/7 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/7 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/7 RA 222 . NC_012971 791160 1 . A consensus_score=45.6 deleted=1 frequency=1 major_base=A major_cov=7/7 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/7 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/7 RA 223 . NC_012971 791198 0 C T consensus_score=146.8 frequency=1 major_base=T major_cov=29/13 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/13 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/13 RA 224 . NC_012971 791250 0 A T consensus_score=234.5 frequency=1 major_base=T major_cov=40/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/28 RA 225 . NC_012971 831947 0 G A bias_e_value=0.00343745 bias_p_value=7.54e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=164.5 fisher_strand_p_value=2.98805e-11 frequency=3.165e-01 ks_quality_p_value=1 major_base=G major_cov=54/41 major_frequency=6.835e-01 minor_base=A minor_cov=1/43 new_cov=1/43 polymorphism_frequency=3.165e-01 polymorphism_score=69.5 prediction=polymorphism ref_cov=54/41 total_cov=55/84 RA 226 . NC_012971 832020 0 G T bias_e_value=0.0963915 bias_p_value=2.11433e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=267.0 fisher_strand_p_value=9.72035e-10 frequency=2.500e-01 ks_quality_p_value=1 major_base=G major_cov=54/45 major_frequency=7.500e-01 minor_base=T minor_cov=0/33 new_cov=0/33 polymorphism_frequency=2.500e-01 polymorphism_score=10.3 prediction=polymorphism ref_cov=54/45 total_cov=54/78 RA 227 . NC_012971 855155 0 G A consensus_score=308.3 frequency=1 major_base=A major_cov=46/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/47 RA 228 . NC_012971 862724 0 T C consensus_score=290.3 frequency=1 major_base=C major_cov=40/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/36 RA 229 . NC_012971 875191 0 G T bias_e_value=4553740 bias_p_value=0.998856 consensus_reject=FREQUENCY_CUTOFF consensus_score=12.4 fisher_strand_p_value=1 frequency=4.375e-01 ks_quality_p_value=0.952551 major_base=G major_cov=7/11 major_frequency=5.625e-01 minor_base=T minor_cov=6/8 new_cov=6/8 polymorphism_frequency=4.375e-01 polymorphism_score=32.1 prediction=polymorphism ref_cov=7/11 total_cov=14/19 RA 230 . NC_012971 931389 0 G T bias_e_value=3868050 bias_p_value=0.848451 consensus_score=483.8 fisher_strand_p_value=0.50272 frequency=1 ks_quality_p_value=1 major_base=T major_cov=64/78 major_frequency=9.861e-01 minor_base=G minor_cov=0/2 new_cov=64/78 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=64/80 RA 231 . NC_012971 992215 0 C T consensus_score=516.9 frequency=1 major_base=T major_cov=100/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=100/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=100/40 RA 232 . NC_012971 1002731 0 G A bias_e_value=4558950 bias_p_value=1 consensus_score=555.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=79/80 major_frequency=9.938e-01 minor_base=C minor_cov=1/0 new_cov=79/80 polymorphism_frequency=9.938e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=80/80 RA 233 . NC_012971 1006183 0 G T bias_e_value=45.6285 bias_p_value=1.00086e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=186.7 fisher_strand_p_value=6.56914e-07 frequency=2.524e-01 ks_quality_p_value=1 major_base=G major_cov=39/38 major_frequency=7.476e-01 minor_base=T minor_cov=0/26 new_cov=0/26 polymorphism_frequency=2.524e-01 polymorphism_score=11.2 prediction=polymorphism ref_cov=39/38 total_cov=39/64 RA 234 . NC_012971 1026045 0 A G consensus_score=470.0 frequency=1 major_base=G major_cov=77/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=77/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=77/50 RA 235 . NC_012971 1100143 0 G A bias_e_value=4558950 bias_p_value=1 consensus_score=188.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=39/22 major_frequency=9.839e-01 minor_base=G minor_cov=1/0 new_cov=39/22 polymorphism_frequency=9.839e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=40/22 RA 236 . NC_012971 1112199 0 G A bias_e_value=1.06556e-05 bias_p_value=2.3373e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=288.2 fisher_strand_p_value=7.48577e-14 frequency=2.168e-01 ks_quality_p_value=1 major_base=G major_cov=79/33 major_frequency=7.832e-01 minor_base=A minor_cov=0/31 new_cov=0/31 polymorphism_frequency=2.168e-01 polymorphism_score=29.6 prediction=polymorphism ref_cov=79/33 total_cov=79/65 RA 237 . NC_012971 1137851 0 A C consensus_score=285.9 frequency=1 major_base=C major_cov=41/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/38 RA 238 . NC_012971 1156533 0 C A bias_e_value=42.4379 bias_p_value=9.30869e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=243.4 fisher_strand_p_value=6.07884e-07 frequency=2.406e-01 ks_quality_p_value=1 major_base=C major_cov=52/49 major_frequency=7.594e-01 minor_base=A minor_cov=31/1 new_cov=31/1 polymorphism_frequency=2.406e-01 polymorphism_score=12.2 prediction=polymorphism ref_cov=52/49 total_cov=83/50 RA 239 . NC_012971 1173770 0 G A consensus_score=192.2 frequency=1 major_base=A major_cov=21/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/34 RA 240 . NC_012971 1202785 0 G T bias_e_value=41.6024 bias_p_value=9.12543e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=226.0 fisher_strand_p_value=5.95089e-07 frequency=2.301e-01 ks_quality_p_value=1 major_base=G major_cov=50/37 major_frequency=7.699e-01 minor_base=T minor_cov=1/25 new_cov=1/25 polymorphism_frequency=2.301e-01 polymorphism_score=10.1 prediction=polymorphism ref_cov=50/37 total_cov=51/62 RA 241 . NC_012971 1308529 0 G A bias_e_value=4558950 bias_p_value=1 consensus_score=311.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=62/33 major_frequency=9.896e-01 minor_base=C minor_cov=1/0 new_cov=62/33 polymorphism_frequency=9.896e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=63/33 RA 242 . NC_012971 1321336 0 A C bias_e_value=0.0438998 bias_p_value=9.62937e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=293.6 fisher_strand_p_value=4.26544e-10 frequency=2.364e-01 ks_quality_p_value=1 major_base=A major_cov=64/62 major_frequency=7.636e-01 minor_base=C minor_cov=39/0 new_cov=39/0 polymorphism_frequency=2.364e-01 polymorphism_score=23.2 prediction=polymorphism ref_cov=64/62 total_cov=103/62 RA 243 . NC_012971 1375645 0 G T bias_e_value=108737 bias_p_value=0.0238514 consensus_reject=FREQUENCY_CUTOFF consensus_score=104.8 fisher_strand_p_value=0.00359908 frequency=2.917e-01 ks_quality_p_value=1 major_base=G major_cov=20/31 major_frequency=7.083e-01 minor_base=T minor_cov=1/20 new_cov=1/20 polymorphism_frequency=2.917e-01 polymorphism_score=15.6 prediction=polymorphism ref_cov=20/31 total_cov=22/51 RA 244 . NC_012971 1376974 0 C A bias_e_value=0.33684 bias_p_value=7.38854e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=224.8 fisher_strand_p_value=3.61507e-09 frequency=2.847e-01 ks_quality_p_value=1 major_base=C major_cov=52/46 major_frequency=7.153e-01 minor_base=A minor_cov=39/0 new_cov=39/0 polymorphism_frequency=2.847e-01 polymorphism_score=15.7 prediction=polymorphism ref_cov=52/46 total_cov=91/46 RA 245 . NC_012971 1384274 0 A G bias_e_value=4558950 bias_p_value=1 consensus_score=417.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999379 major_base=G major_cov=56/57 major_frequency=9.912e-01 minor_base=T minor_cov=0/1 new_cov=56/57 polymorphism_frequency=9.912e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/58 RA 246 . NC_012971 1385762 0 G A bias_e_value=1175.66 bias_p_value=0.000257879 consensus_reject=FREQUENCY_CUTOFF consensus_score=162.4 fisher_strand_p_value=2.19945e-05 frequency=2.474e-01 ks_quality_p_value=1 major_base=G major_cov=37/36 major_frequency=7.526e-01 minor_base=A minor_cov=1/23 new_cov=1/23 polymorphism_frequency=2.474e-01 polymorphism_score=19.6 prediction=polymorphism ref_cov=37/36 total_cov=38/62 RA 247 . NC_012971 1403229 0 A G bias_e_value=2760640 bias_p_value=0.605542 consensus_reject=FREQUENCY_CUTOFF consensus_score=297.9 fisher_strand_p_value=0.257591 frequency=2.063e-01 ks_quality_p_value=0.995882 major_base=A major_cov=59/41 major_frequency=7.937e-01 minor_base=G minor_cov=19/7 new_cov=19/7 polymorphism_frequency=2.063e-01 polymorphism_score=62.6 prediction=polymorphism ref_cov=59/41 total_cov=78/48 RA 248 . NC_012971 1403241 0 G A bias_e_value=3178030 bias_p_value=0.697096 consensus_reject=FREQUENCY_CUTOFF consensus_score=259.5 fisher_strand_p_value=0.411469 frequency=2.409e-01 ks_quality_p_value=0.804721 major_base=G major_cov=63/41 major_frequency=7.591e-01 minor_base=A minor_cov=23/10 new_cov=23/10 polymorphism_frequency=2.409e-01 polymorphism_score=92.8 prediction=polymorphism ref_cov=63/41 total_cov=86/51 RA 249 . NC_012971 1403242 0 C T bias_e_value=3018470 bias_p_value=0.662097 consensus_reject=FREQUENCY_CUTOFF consensus_score=280.9 fisher_strand_p_value=0.304752 frequency=2.270e-01 ks_quality_p_value=0.986874 major_base=C major_cov=67/42 major_frequency=7.730e-01 minor_base=T minor_cov=23/9 new_cov=23/9 polymorphism_frequency=2.270e-01 polymorphism_score=86.2 prediction=polymorphism ref_cov=67/42 total_cov=90/51 RA 250 . NC_012971 1403256 0 G A bias_e_value=1723000 bias_p_value=0.377938 consensus_reject=FREQUENCY_CUTOFF consensus_score=260.7 fisher_strand_p_value=0.121659 frequency=2.715e-01 ks_quality_p_value=1 major_base=G major_cov=71/39 major_frequency=7.285e-01 minor_base=A minor_cov=32/9 new_cov=32/9 polymorphism_frequency=2.715e-01 polymorphism_score=114.1 prediction=polymorphism ref_cov=71/39 total_cov=103/48 RA 251 . NC_012971 1403263 0 C A bias_e_value=552548 bias_p_value=0.121201 consensus_reject=FREQUENCY_CUTOFF consensus_score=294.1 fisher_strand_p_value=0.0840556 frequency=2.628e-01 ks_quality_p_value=0.310329 major_base=C major_cov=72/43 major_frequency=7.372e-01 minor_base=A minor_cov=32/9 new_cov=32/9 polymorphism_frequency=2.628e-01 polymorphism_score=98.0 prediction=polymorphism ref_cov=72/43 total_cov=104/52 RA 252 . NC_012971 1403266 0 T C bias_e_value=711424 bias_p_value=0.15605 consensus_reject=FREQUENCY_CUTOFF consensus_score=256.1 fisher_strand_p_value=0.121007 frequency=2.692e-01 ks_quality_p_value=0.298443 major_base=T major_cov=73/41 major_frequency=7.308e-01 minor_base=C minor_cov=33/9 new_cov=33/9 polymorphism_frequency=2.692e-01 polymorphism_score=121.7 prediction=polymorphism ref_cov=73/41 total_cov=106/51 RA 253 . NC_012971 1403307 0 T C bias_e_value=616066 bias_p_value=0.135133 consensus_reject=FREQUENCY_CUTOFF consensus_score=242.9 fisher_strand_p_value=0.0299819 frequency=3.057e-01 ks_quality_p_value=1 major_base=T major_cov=63/46 major_frequency=6.943e-01 minor_base=C minor_cov=37/11 new_cov=37/11 polymorphism_frequency=3.057e-01 polymorphism_score=134.0 prediction=polymorphism ref_cov=63/46 total_cov=100/57 RA 254 . NC_012971 1403309 0 A G bias_e_value=792366 bias_p_value=0.173804 consensus_reject=FREQUENCY_CUTOFF consensus_score=246.6 fisher_strand_p_value=0.0448119 frequency=3.013e-01 ks_quality_p_value=0.927838 major_base=A major_cov=64/45 major_frequency=6.987e-01 minor_base=G minor_cov=36/11 new_cov=36/11 polymorphism_frequency=3.013e-01 polymorphism_score=133.6 prediction=polymorphism ref_cov=64/45 total_cov=100/56 RA 255 . NC_012971 1403322 0 A G bias_e_value=98729.8 bias_p_value=0.0216563 consensus_reject=FREQUENCY_CUTOFF consensus_score=259.3 fisher_strand_p_value=0.00652171 frequency=3.017e-01 ks_quality_p_value=0.492632 major_base=A major_cov=73/52 major_frequency=6.983e-01 minor_base=G minor_cov=43/11 new_cov=43/11 polymorphism_frequency=3.017e-01 polymorphism_score=151.0 prediction=polymorphism ref_cov=73/52 total_cov=118/64 RA 256 . NC_012971 1403323 0 C A bias_e_value=151007 bias_p_value=0.0331232 consensus_reject=FREQUENCY_CUTOFF consensus_score=280.7 fisher_strand_p_value=0.0114961 frequency=3.060e-01 ks_quality_p_value=0.461872 major_base=C major_cov=74/53 major_frequency=6.940e-01 minor_base=A minor_cov=44/12 new_cov=44/12 polymorphism_frequency=3.060e-01 polymorphism_score=136.0 prediction=polymorphism ref_cov=74/53 total_cov=118/65 RA 257 . NC_012971 1403325 0 G A bias_e_value=85714.7 bias_p_value=0.0188014 consensus_reject=FREQUENCY_CUTOFF consensus_score=217.6 fisher_strand_p_value=0.0176052 frequency=3.039e-01 ks_quality_p_value=0.154634 major_base=G major_cov=75/51 major_frequency=6.961e-01 minor_base=A minor_cov=43/12 new_cov=43/12 polymorphism_frequency=3.039e-01 polymorphism_score=154.4 prediction=polymorphism ref_cov=75/51 total_cov=118/65 RA 258 . NC_012971 1403336 0 T C bias_e_value=1697620 bias_p_value=0.37237 consensus_reject=FREQUENCY_CUTOFF consensus_score=266.3 fisher_strand_p_value=0.124195 frequency=3.317e-01 ks_quality_p_value=0.958408 major_base=T major_cov=79/56 major_frequency=6.683e-01 minor_base=C minor_cov=47/20 new_cov=47/20 polymorphism_frequency=3.317e-01 polymorphism_score=197.2 prediction=polymorphism ref_cov=79/56 total_cov=126/76 RA 259 . NC_012971 1403348 0 A G bias_e_value=404124 bias_p_value=0.088644 consensus_reject=FREQUENCY_CUTOFF consensus_score=234.1 fisher_strand_p_value=0.0507773 frequency=3.448e-01 ks_quality_p_value=0.346332 major_base=A major_cov=74/59 major_frequency=6.552e-01 minor_base=G minor_cov=49/21 new_cov=49/21 polymorphism_frequency=3.448e-01 polymorphism_score=208.2 prediction=polymorphism ref_cov=74/59 total_cov=123/80 RA 260 . NC_012971 1403360 0 A G bias_e_value=220421 bias_p_value=0.048349 consensus_reject=FREQUENCY_CUTOFF consensus_score=224.7 fisher_strand_p_value=0.0112124 frequency=3.544e-01 ks_quality_p_value=0.745458 major_base=A major_cov=72/61 major_frequency=6.456e-01 minor_base=G minor_cov=53/20 new_cov=53/20 polymorphism_frequency=3.544e-01 polymorphism_score=210.7 prediction=polymorphism ref_cov=72/61 total_cov=125/82 RA 261 . NC_012971 1403371 0 G A bias_e_value=152792 bias_p_value=0.0335146 consensus_reject=FREQUENCY_CUTOFF consensus_score=176.0 fisher_strand_p_value=0.00614701 frequency=3.780e-01 ks_quality_p_value=0.875962 major_base=G major_cov=67/63 major_frequency=6.220e-01 minor_base=A minor_cov=56/23 new_cov=56/23 polymorphism_frequency=3.780e-01 polymorphism_score=248.2 prediction=polymorphism ref_cov=67/63 total_cov=123/86 RA 262 . NC_012971 1403372 0 A G bias_e_value=149744 bias_p_value=0.0328462 consensus_reject=FREQUENCY_CUTOFF consensus_score=204.8 fisher_strand_p_value=0.00547705 frequency=3.750e-01 ks_quality_p_value=0.959805 major_base=A major_cov=67/63 major_frequency=6.250e-01 minor_base=G minor_cov=56/22 new_cov=56/22 polymorphism_frequency=3.750e-01 polymorphism_score=234.1 prediction=polymorphism ref_cov=67/63 total_cov=123/85 RA 263 . NC_012971 1403377 0 C T bias_e_value=111183 bias_p_value=0.0243878 consensus_reject=FREQUENCY_CUTOFF consensus_score=157.2 fisher_strand_p_value=0.00384573 frequency=3.883e-01 ks_quality_p_value=0.960709 major_base=C major_cov=64/62 major_frequency=6.117e-01 minor_base=T minor_cov=57/23 new_cov=57/23 polymorphism_frequency=3.883e-01 polymorphism_score=247.1 prediction=polymorphism ref_cov=64/62 total_cov=122/85 RA 264 . NC_012971 1403405 0 T G bias_e_value=381484 bias_p_value=0.083678 consensus_reject=FREQUENCY_CUTOFF consensus_score=95.1 fisher_strand_p_value=0.0166597 frequency=3.953e-01 ks_quality_p_value=0.982456 major_base=T major_cov=65/65 major_frequency=6.047e-01 minor_base=G minor_cov=57/28 new_cov=57/28 polymorphism_frequency=3.953e-01 polymorphism_score=272.4 prediction=polymorphism ref_cov=65/65 total_cov=122/93 RA 265 . NC_012971 1403410 0 G C bias_e_value=715825 bias_p_value=0.157015 consensus_reject=FREQUENCY_CUTOFF consensus_score=179.7 fisher_strand_p_value=0.0364046 frequency=4.101e-01 ks_quality_p_value=1 major_base=G major_cov=66/62 major_frequency=5.899e-01 minor_base=C minor_cov=59/30 new_cov=59/30 polymorphism_frequency=4.101e-01 polymorphism_score=300.6 prediction=polymorphism ref_cov=66/62 total_cov=127/92 RA 266 . NC_012971 1403415 0 G A bias_e_value=39.8777 bias_p_value=8.74711e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=30.0 fisher_strand_p_value=0.116709 frequency=4.381e-01 ks_quality_p_value=4.87312e-06 major_base=G major_cov=66/52 major_frequency=5.619e-01 minor_base=A minor_cov=62/30 new_cov=62/30 polymorphism_frequency=4.381e-01 polymorphism_score=297.0 prediction=polymorphism ref_cov=66/52 total_cov=128/89 RA 267 . NC_012971 1403423 0 A G bias_e_value=226677 bias_p_value=0.0497214 consensus_reject=FREQUENCY_CUTOFF consensus_score=169.1 fisher_strand_p_value=0.00905228 frequency=4.054e-01 ks_quality_p_value=0.955146 major_base=A major_cov=66/66 major_frequency=5.946e-01 minor_base=G minor_cov=61/29 new_cov=61/29 polymorphism_frequency=4.054e-01 polymorphism_score=270.9 prediction=polymorphism ref_cov=66/66 total_cov=127/95 RA 268 . NC_012971 1403446 0 A T bias_e_value=179126 bias_p_value=0.0392911 consensus_reject=FREQUENCY_CUTOFF consensus_score=214.7 fisher_strand_p_value=0.0102832 frequency=3.828e-01 ks_quality_p_value=0.633206 major_base=A major_cov=58/71 major_frequency=6.172e-01 minor_base=T minor_cov=51/29 new_cov=51/29 polymorphism_frequency=3.828e-01 polymorphism_score=308.2 prediction=polymorphism ref_cov=58/71 total_cov=117/100 RA 269 . NC_012971 1403448 0 A G bias_e_value=665580 bias_p_value=0.145994 consensus_reject=FREQUENCY_CUTOFF consensus_score=220.2 fisher_strand_p_value=0.048036 frequency=3.624e-01 ks_quality_p_value=0.689567 major_base=A major_cov=68/71 major_frequency=6.376e-01 minor_base=G minor_cov=50/29 new_cov=50/29 polymorphism_frequency=3.624e-01 polymorphism_score=233.5 prediction=polymorphism ref_cov=68/71 total_cov=118/100 RA 270 . NC_012971 1403455 0 C T bias_e_value=290403 bias_p_value=0.0636995 consensus_reject=FREQUENCY_CUTOFF consensus_score=201.3 fisher_strand_p_value=0.0127441 frequency=3.561e-01 ks_quality_p_value=0.917295 major_base=C major_cov=62/70 major_frequency=6.439e-01 minor_base=T minor_cov=48/25 new_cov=48/25 polymorphism_frequency=3.561e-01 polymorphism_score=224.2 prediction=polymorphism ref_cov=62/70 total_cov=111/95 RA 271 . NC_012971 1403456 0 A G bias_e_value=235484 bias_p_value=0.051653 consensus_reject=FREQUENCY_CUTOFF consensus_score=218.1 fisher_strand_p_value=0.0127441 frequency=3.561e-01 ks_quality_p_value=0.710513 major_base=A major_cov=62/70 major_frequency=6.439e-01 minor_base=G minor_cov=48/25 new_cov=48/25 polymorphism_frequency=3.561e-01 polymorphism_score=213.3 prediction=polymorphism ref_cov=62/70 total_cov=111/95 RA 272 . NC_012971 1403459 0 T G bias_e_value=287907 bias_p_value=0.063152 consensus_reject=FREQUENCY_CUTOFF consensus_score=150.4 fisher_strand_p_value=0.0131394 frequency=3.544e-01 ks_quality_p_value=0.880341 major_base=T major_cov=63/70 major_frequency=6.456e-01 minor_base=G minor_cov=48/25 new_cov=48/25 polymorphism_frequency=3.544e-01 polymorphism_score=236.4 prediction=polymorphism ref_cov=63/70 total_cov=111/95 RA 273 . NC_012971 1403461 0 G C bias_e_value=1005170 bias_p_value=0.220482 consensus_reject=FREQUENCY_CUTOFF consensus_score=326.5 fisher_strand_p_value=0.0570676 frequency=3.302e-01 ks_quality_p_value=1 major_base=G major_cov=71/71 major_frequency=6.698e-01 minor_base=C minor_cov=45/25 new_cov=45/25 polymorphism_frequency=3.302e-01 polymorphism_score=210.9 prediction=polymorphism ref_cov=71/71 total_cov=119/97 RA 274 . NC_012971 1403462 0 C A bias_e_value=468143 bias_p_value=0.102687 consensus_reject=FREQUENCY_CUTOFF consensus_score=293.7 fisher_strand_p_value=0.0211448 frequency=3.426e-01 ks_quality_p_value=1 major_base=C major_cov=70/72 major_frequency=6.574e-01 minor_base=A minor_cov=49/25 new_cov=49/25 polymorphism_frequency=3.426e-01 polymorphism_score=177.9 prediction=polymorphism ref_cov=70/72 total_cov=119/97 RA 275 . NC_012971 1403479 0 T A bias_e_value=817134 bias_p_value=0.179237 consensus_reject=FREQUENCY_CUTOFF consensus_score=352.3 fisher_strand_p_value=0.0432976 frequency=3.273e-01 ks_quality_p_value=1 major_base=T major_cov=77/71 major_frequency=6.727e-01 minor_base=A minor_cov=48/24 new_cov=48/24 polymorphism_frequency=3.273e-01 polymorphism_score=275.7 prediction=polymorphism ref_cov=77/71 total_cov=125/95 RA 276 . NC_012971 1403482 0 C T bias_e_value=199009 bias_p_value=0.0436523 consensus_reject=FREQUENCY_CUTOFF consensus_score=230.6 fisher_strand_p_value=0.0289235 frequency=3.349e-01 ks_quality_p_value=0.255466 major_base=C major_cov=72/71 major_frequency=6.651e-01 minor_base=T minor_cov=48/24 new_cov=48/24 polymorphism_frequency=3.349e-01 polymorphism_score=217.4 prediction=polymorphism ref_cov=72/71 total_cov=124/95 RA 277 . NC_012971 1403548 0 A C bias_e_value=659019 bias_p_value=0.144555 consensus_reject=FREQUENCY_CUTOFF consensus_score=274.9 fisher_strand_p_value=0.0327025 frequency=2.889e-01 ks_quality_p_value=1 major_base=A major_cov=51/77 major_frequency=7.111e-01 minor_base=C minor_cov=30/22 new_cov=30/22 polymorphism_frequency=2.889e-01 polymorphism_score=146.0 prediction=polymorphism ref_cov=51/77 total_cov=81/99 RA 278 . NC_012971 1403575 0 A G bias_e_value=1429950 bias_p_value=0.313657 consensus_reject=FREQUENCY_CUTOFF consensus_score=350.0 fisher_strand_p_value=0.0969455 frequency=2.581e-01 ks_quality_p_value=0.958293 major_base=A major_cov=61/77 major_frequency=7.419e-01 minor_base=G minor_cov=28/20 new_cov=28/20 polymorphism_frequency=2.581e-01 polymorphism_score=134.0 prediction=polymorphism ref_cov=61/77 total_cov=89/97 RA 279 . NC_012971 1403609 0 G A bias_e_value=3302640 bias_p_value=0.72443 consensus_reject=FREQUENCY_CUTOFF consensus_score=382.5 fisher_strand_p_value=0.35941 frequency=2.123e-01 ks_quality_p_value=0.992521 major_base=G major_cov=58/83 major_frequency=7.877e-01 minor_base=A minor_cov=19/19 new_cov=19/19 polymorphism_frequency=2.123e-01 polymorphism_score=105.6 prediction=polymorphism ref_cov=58/83 total_cov=77/102 RA 280 . NC_012971 1403610 0 G A bias_e_value=2371290 bias_p_value=0.520139 consensus_reject=FREQUENCY_CUTOFF consensus_score=366.9 fisher_strand_p_value=0.271997 frequency=2.159e-01 ks_quality_p_value=0.731314 major_base=G major_cov=55/83 major_frequency=7.841e-01 minor_base=A minor_cov=19/19 new_cov=19/19 polymorphism_frequency=2.159e-01 polymorphism_score=108.7 prediction=polymorphism ref_cov=55/83 total_cov=74/102 RA 281 . NC_012971 1456833 0 T C bias_e_value=3.13377 bias_p_value=6.87388e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=145.8 fisher_strand_p_value=3.80077e-08 frequency=3.000e-01 ks_quality_p_value=1 major_base=T major_cov=37/33 major_frequency=7.000e-01 minor_base=C minor_cov=0/30 new_cov=0/30 polymorphism_frequency=3.000e-01 polymorphism_score=26.9 prediction=polymorphism ref_cov=37/33 total_cov=37/63 RA 282 . NC_012971 1456835 0 G A bias_e_value=3299.12 bias_p_value=0.000723657 consensus_reject=FREQUENCY_CUTOFF consensus_score=172.7 fisher_strand_p_value=6.83262e-05 frequency=2.376e-01 ks_quality_p_value=1 major_base=G major_cov=36/41 major_frequency=7.624e-01 minor_base=A minor_cov=1/23 new_cov=1/23 polymorphism_frequency=2.376e-01 polymorphism_score=17.0 prediction=polymorphism ref_cov=36/41 total_cov=37/64 RA 283 . NC_012971 1527829 0 A G consensus_score=439.4 frequency=1 major_base=G major_cov=51/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/65 RA 284 . NC_012971 1544449 0 C T consensus_score=451.8 frequency=1 major_base=T major_cov=61/69 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/69 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/69 RA 285 . NC_012971 1559313 0 C T consensus_score=386.4 frequency=1 major_base=T major_cov=59/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/51 RA 286 . NC_012971 1814885 0 C T consensus_score=433.6 frequency=1 major_base=T major_cov=65/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=65/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=65/60 RA 287 . NC_012971 1822910 0 A C bias_e_value=4558950 bias_p_value=1 consensus_score=319.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=49/42 major_frequency=9.891e-01 minor_base=T minor_cov=1/0 new_cov=49/42 polymorphism_frequency=9.891e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/42 RA 288 . NC_012971 1834871 0 G A bias_e_value=4558950 bias_p_value=1 consensus_score=348.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=42/54 major_frequency=9.897e-01 minor_base=G minor_cov=0/1 new_cov=42/54 polymorphism_frequency=9.897e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=42/55 RA 289 . NC_012971 1848340 0 C A bias_e_value=0.0255922 bias_p_value=5.61361e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=230.4 fisher_strand_p_value=2.42597e-10 frequency=2.243e-01 ks_quality_p_value=1 major_base=C major_cov=26/57 major_frequency=7.757e-01 minor_base=A minor_cov=24/0 new_cov=24/0 polymorphism_frequency=2.243e-01 polymorphism_score=12.8 prediction=polymorphism ref_cov=26/57 total_cov=50/57 RA 290 . NC_012971 1859990 0 A C bias_e_value=3.81684e-07 bias_p_value=8.37219e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=171.2 fisher_strand_p_value=2.41574e-15 frequency=3.196e-01 ks_quality_p_value=1 major_base=A major_cov=13/53 major_frequency=6.804e-01 minor_base=C minor_cov=31/0 new_cov=31/0 polymorphism_frequency=3.196e-01 polymorphism_score=18.6 prediction=polymorphism ref_cov=13/53 total_cov=45/53 RA 291 . NC_012971 1949161 0 T G consensus_score=415.4 frequency=1 major_base=G major_cov=62/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/51 RA 292 . NC_012971 1973596 0 T C consensus_score=34.9 frequency=1 major_base=C major_cov=6/5 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=6/5 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=6/5 RA 293 . NC_012971 1980248 0 G T bias_e_value=3.29795 bias_p_value=7.234e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=182.8 fisher_strand_p_value=4.01188e-08 frequency=2.957e-01 ks_quality_p_value=1 major_base=G major_cov=39/42 major_frequency=7.043e-01 minor_base=T minor_cov=0/34 new_cov=0/34 polymorphism_frequency=2.957e-01 polymorphism_score=12.1 prediction=polymorphism ref_cov=39/42 total_cov=39/76 RA 294 . NC_012971 2007879 0 A T consensus_score=460.7 frequency=1 major_base=T major_cov=66/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=66/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/65 RA 295 . NC_012971 2016684 0 G T bias_e_value=0.0994688 bias_p_value=2.18183e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=227.8 fisher_strand_p_value=1.00459e-09 frequency=2.613e-01 ks_quality_p_value=1 major_base=G major_cov=50/32 major_frequency=7.387e-01 minor_base=T minor_cov=0/29 new_cov=0/29 polymorphism_frequency=2.613e-01 polymorphism_score=11.9 prediction=polymorphism ref_cov=50/32 total_cov=50/61 RA 296 . NC_012971 2051872 0 A G bias_e_value=4384600 bias_p_value=0.961755 consensus_reject=FREQUENCY_CUTOFF consensus_score=169.2 fisher_strand_p_value=1 frequency=2.396e-01 ks_quality_p_value=0.736498 major_base=A major_cov=35/38 major_frequency=7.604e-01 minor_base=G minor_cov=11/12 new_cov=11/12 polymorphism_frequency=2.396e-01 polymorphism_score=55.3 prediction=polymorphism ref_cov=35/38 total_cov=46/50 RA 297 . NC_012971 2051885 0 T G bias_e_value=2835030 bias_p_value=0.62186 consensus_reject=FREQUENCY_CUTOFF consensus_score=125.2 fisher_strand_p_value=0.327713 frequency=2.500e-01 ks_quality_p_value=0.820031 major_base=T major_cov=28/35 major_frequency=7.500e-01 minor_base=G minor_cov=12/9 new_cov=12/9 polymorphism_frequency=2.500e-01 polymorphism_score=48.5 prediction=polymorphism ref_cov=28/35 total_cov=40/44 RA 298 . NC_012971 2051887 0 T C bias_e_value=1062030 bias_p_value=0.232955 consensus_reject=FREQUENCY_CUTOFF consensus_score=125.1 fisher_strand_p_value=0.0614816 frequency=3.140e-01 ks_quality_p_value=1 major_base=T major_cov=23/36 major_frequency=6.860e-01 minor_base=C minor_cov=17/10 new_cov=17/10 polymorphism_frequency=3.140e-01 polymorphism_score=56.6 prediction=polymorphism ref_cov=23/36 total_cov=40/46 RA 299 . NC_012971 2052245 0 T A bias_e_value=1577630 bias_p_value=0.34605 consensus_reject=FREQUENCY_CUTOFF consensus_score=170.4 fisher_strand_p_value=0.112479 frequency=2.381e-01 ks_quality_p_value=0.950946 major_base=T major_cov=43/21 major_frequency=7.619e-01 minor_base=A minor_cov=9/11 new_cov=9/11 polymorphism_frequency=2.381e-01 polymorphism_score=66.9 prediction=polymorphism ref_cov=43/21 total_cov=55/36 RA 300 . NC_012971 2052283 0 C T bias_e_value=244950 bias_p_value=0.0537294 consensus_reject=FREQUENCY_CUTOFF consensus_score=173.9 fisher_strand_p_value=0.0094985 frequency=2.078e-01 ks_quality_p_value=1 major_base=C major_cov=39/22 major_frequency=7.922e-01 minor_base=T minor_cov=4/12 new_cov=4/12 polymorphism_frequency=2.078e-01 polymorphism_score=20.0 prediction=polymorphism ref_cov=39/22 total_cov=51/35 RA 301 . NC_012971 2052318 0 T G bias_e_value=3728150 bias_p_value=0.817766 consensus_reject=FREQUENCY_CUTOFF consensus_score=163.7 fisher_strand_p_value=0.460725 frequency=2.366e-01 ks_quality_p_value=1 major_base=T major_cov=43/28 major_frequency=7.634e-01 minor_base=G minor_cov=11/11 new_cov=11/11 polymorphism_frequency=2.366e-01 polymorphism_score=43.8 prediction=polymorphism ref_cov=43/28 total_cov=55/39 RA 302 . NC_012971 2052319 0 C T bias_e_value=4218970 bias_p_value=0.925426 consensus_reject=FREQUENCY_CUTOFF consensus_score=150.9 fisher_strand_p_value=0.639556 frequency=2.604e-01 ks_quality_p_value=1 major_base=C major_cov=42/29 major_frequency=7.396e-01 minor_base=T minor_cov=13/12 new_cov=13/12 polymorphism_frequency=2.604e-01 polymorphism_score=52.0 prediction=polymorphism ref_cov=42/29 total_cov=56/41 RA 303 . NC_012971 2052320 0 C A bias_e_value=1372620 bias_p_value=0.301083 consensus_reject=FREQUENCY_CUTOFF consensus_score=179.3 fisher_strand_p_value=0.0876737 frequency=2.268e-01 ks_quality_p_value=1 major_base=C major_cov=47/28 major_frequency=7.732e-01 minor_base=A minor_cov=9/13 new_cov=9/13 polymorphism_frequency=2.268e-01 polymorphism_score=41.8 prediction=polymorphism ref_cov=47/28 total_cov=56/41 RA 304 . NC_012971 2075017 0 A C consensus_score=354.7 frequency=1 major_base=C major_cov=53/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/45 RA 305 . NC_012971 2183267 0 G T bias_e_value=0.000898551 bias_p_value=1.97096e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=280.3 fisher_strand_p_value=7.40146e-12 frequency=2.394e-01 ks_quality_p_value=1 major_base=G major_cov=66/42 major_frequency=7.606e-01 minor_base=T minor_cov=0/34 new_cov=0/34 polymorphism_frequency=2.394e-01 polymorphism_score=18.2 prediction=polymorphism ref_cov=66/42 total_cov=66/76 RA 306 . NC_012971 2227497 0 G A bias_e_value=4558950 bias_p_value=1 consensus_score=298.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=52/33 major_frequency=9.884e-01 minor_base=C minor_cov=1/0 new_cov=52/33 polymorphism_frequency=9.884e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/33 RA 307 . NC_012971 2227498 0 G A bias_e_value=4558950 bias_p_value=1 consensus_score=287.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=52/33 major_frequency=9.884e-01 minor_base=C minor_cov=1/0 new_cov=52/33 polymorphism_frequency=9.884e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/33 RA 308 . NC_012971 2275119 0 A T bias_e_value=3644780 bias_p_value=0.799477 consensus_score=599.9 fisher_strand_p_value=0.43787 frequency=1 ks_quality_p_value=1 major_base=T major_cov=95/73 major_frequency=9.941e-01 minor_base=G minor_cov=0/1 new_cov=95/73 polymorphism_frequency=9.941e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=96/74 RA 309 . NC_012971 2275120 0 A G bias_e_value=4558950 bias_p_value=1 consensus_score=610.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=94/72 major_frequency=9.765e-01 minor_base=A minor_cov=2/2 new_cov=94/72 polymorphism_frequency=9.765e-01 polymorphism_score=NA prediction=consensus ref_cov=2/2 total_cov=96/74 RA 310 . NC_012971 2332077 0 G T bias_e_value=22.5814 bias_p_value=4.95319e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=101.6 fisher_strand_p_value=3.09821e-07 frequency=2.973e-01 ks_quality_p_value=1 major_base=G major_cov=31/21 major_frequency=7.027e-01 minor_base=T minor_cov=0/22 new_cov=0/22 polymorphism_frequency=2.973e-01 polymorphism_score=11.4 prediction=polymorphism ref_cov=31/21 total_cov=31/43 RA 311 . NC_012971 2353119 0 C A bias_e_value=2.90367 bias_p_value=6.36916e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=207.9 fisher_strand_p_value=3.50605e-08 frequency=2.586e-01 ks_quality_p_value=1 major_base=C major_cov=42/44 major_frequency=7.414e-01 minor_base=A minor_cov=30/0 new_cov=30/0 polymorphism_frequency=2.586e-01 polymorphism_score=12.2 prediction=polymorphism ref_cov=42/44 total_cov=72/44 RA 312 . NC_012971 2355153 0 A C bias_e_value=0.000666321 bias_p_value=1.46157e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=146.5 fisher_strand_p_value=5.42527e-12 frequency=3.026e-01 ks_quality_p_value=1 major_base=A major_cov=10/43 major_frequency=6.974e-01 minor_base=C minor_cov=23/0 new_cov=23/0 polymorphism_frequency=3.026e-01 polymorphism_score=12.9 prediction=polymorphism ref_cov=10/43 total_cov=33/43 RA 313 . NC_012971 2356080 0 C T consensus_score=369.3 frequency=1 major_base=T major_cov=53/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/52 RA 314 . NC_012971 2477975 0 T C consensus_score=296.8 frequency=1 major_base=C major_cov=34/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/47 RA 315 . NC_012971 2567019 0 C T consensus_score=397.1 frequency=1 major_base=T major_cov=59/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/56 RA 316 . NC_012971 2657957 0 A C bias_e_value=1011910 bias_p_value=0.221962 consensus_reject=FREQUENCY_CUTOFF consensus_score=116.6 fisher_strand_p_value=0.0575854 frequency=2.466e-01 ks_quality_p_value=1 major_base=A major_cov=19/36 major_frequency=7.534e-01 minor_base=C minor_cov=11/7 new_cov=11/7 polymorphism_frequency=2.466e-01 polymorphism_score=40.0 prediction=polymorphism ref_cov=19/36 total_cov=30/43 RA 317 . NC_012971 2764352 0 C T consensus_score=294.3 frequency=1 major_base=T major_cov=26/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/66 RA 318 . NC_012971 2879376 0 C A consensus_score=297.1 frequency=1 major_base=A major_cov=37/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/47 RA 319 . NC_012971 2880243 0 C T bias_e_value=2374610 bias_p_value=0.520868 consensus_score=261.3 fisher_strand_p_value=0.199367 frequency=1 ks_quality_p_value=1 major_base=T major_cov=44/34 major_frequency=9.750e-01 minor_base=G minor_cov=0/2 new_cov=44/34 polymorphism_frequency=9.750e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/36 RA 320 . NC_012971 2880800 0 T C consensus_score=374.4 frequency=1 major_base=C major_cov=55/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/47 RA 321 . NC_012971 2885744 0 G T bias_e_value=0.012026 bias_p_value=2.63789e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=135.1 fisher_strand_p_value=1.10241e-10 frequency=3.434e-01 ks_quality_p_value=1 major_base=G major_cov=25/40 major_frequency=6.566e-01 minor_base=T minor_cov=34/0 new_cov=34/0 polymorphism_frequency=3.434e-01 polymorphism_score=35.8 prediction=polymorphism ref_cov=25/40 total_cov=59/40 RA 322 . NC_012971 2885752 0 G T bias_e_value=24.9654 bias_p_value=5.47612e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=125.8 fisher_strand_p_value=3.4484e-07 frequency=3.000e-01 ks_quality_p_value=1 major_base=G major_cov=26/37 major_frequency=7.000e-01 minor_base=T minor_cov=26/1 new_cov=26/1 polymorphism_frequency=3.000e-01 polymorphism_score=20.7 prediction=polymorphism ref_cov=26/37 total_cov=52/38 RA 323 . NC_012971 2891803 0 G A consensus_score=457.0 frequency=1 major_base=A major_cov=46/82 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/82 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/82 RA 324 . NC_012971 2891814 0 A C bias_e_value=3121950 bias_p_value=0.684795 consensus_score=472.3 fisher_strand_p_value=0.320313 frequency=1 ks_quality_p_value=0.999508 major_base=C major_cov=40/87 major_frequency=9.922e-01 minor_base=A minor_cov=1/0 new_cov=40/87 polymorphism_frequency=9.922e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=41/87 RA 325 . NC_012971 2900353 0 A G consensus_score=387.7 frequency=1 major_base=G major_cov=57/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=57/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/53 RA 326 . NC_012971 2940412 0 C A bias_e_value=9.84648 bias_p_value=2.15981e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=192.2 fisher_strand_p_value=1.28018e-07 frequency=2.712e-01 ks_quality_p_value=1 major_base=C major_cov=46/40 major_frequency=7.288e-01 minor_base=A minor_cov=32/0 new_cov=32/0 polymorphism_frequency=2.712e-01 polymorphism_score=11.1 prediction=polymorphism ref_cov=46/40 total_cov=78/40 RA 327 . NC_012971 2958510 0 C T bias_e_value=1.33785e-05 bias_p_value=2.93455e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=226.4 fisher_strand_p_value=9.46992e-14 frequency=2.734e-01 ks_quality_p_value=1 major_base=C major_cov=36/65 major_frequency=7.266e-01 minor_base=T minor_cov=38/0 new_cov=38/0 polymorphism_frequency=2.734e-01 polymorphism_score=28.9 prediction=polymorphism ref_cov=36/65 total_cov=83/65 RA 328 . NC_012971 3162393 0 C T consensus_score=284.8 frequency=1 major_base=T major_cov=39/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/41 RA 329 . NC_012971 3197975 0 A G bias_e_value=4558950 bias_p_value=1 consensus_score=293.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=27/51 major_frequency=9.873e-01 minor_base=T minor_cov=0/1 new_cov=27/51 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/52 RA 330 . NC_012971 3197976 0 A T consensus_score=266.2 frequency=1 major_base=T major_cov=27/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/52 RA 331 . NC_012971 3262501 0 G T bias_e_value=1.65978 bias_p_value=3.64071e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=145.7 fisher_strand_p_value=1.94093e-08 frequency=3.398e-01 ks_quality_p_value=1 major_base=G major_cov=34/34 major_frequency=6.602e-01 minor_base=T minor_cov=0/35 new_cov=0/35 polymorphism_frequency=3.398e-01 polymorphism_score=15.4 prediction=polymorphism ref_cov=34/34 total_cov=34/69 RA 332 . NC_012971 3443292 0 G A bias_e_value=4558950 bias_p_value=1 consensus_score=348.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=56/44 major_frequency=9.901e-01 minor_base=C minor_cov=1/0 new_cov=56/44 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/44 RA 333 . NC_012971 3481701 0 G A bias_e_value=2034030 bias_p_value=0.446162 consensus_reject=FREQUENCY_CUTOFF consensus_score=210.7 fisher_strand_p_value=0.157167 frequency=2.400e-01 ks_quality_p_value=0.993704 major_base=G major_cov=28/48 major_frequency=7.600e-01 minor_base=A minor_cov=13/11 new_cov=13/11 polymorphism_frequency=2.400e-01 polymorphism_score=61.6 prediction=polymorphism ref_cov=28/48 total_cov=41/59 RA 334 . NC_012971 3481728 0 G C bias_e_value=4246280 bias_p_value=0.931416 consensus_reject=FREQUENCY_CUTOFF consensus_score=201.8 fisher_strand_p_value=0.653286 frequency=2.913e-01 ks_quality_p_value=1 major_base=G major_cov=25/48 major_frequency=7.087e-01 minor_base=C minor_cov=12/18 new_cov=12/18 polymorphism_frequency=2.913e-01 polymorphism_score=89.2 prediction=polymorphism ref_cov=25/48 total_cov=37/66 RA 335 . NC_012971 3481765 0 A C bias_e_value=4558850 bias_p_value=0.999978 consensus_reject=FREQUENCY_CUTOFF consensus_score=140.0 fisher_strand_p_value=1 frequency=3.163e-01 ks_quality_p_value=0.99338 major_base=A major_cov=27/40 major_frequency=6.837e-01 minor_base=C minor_cov=13/18 new_cov=13/18 polymorphism_frequency=3.163e-01 polymorphism_score=91.7 prediction=polymorphism ref_cov=27/40 total_cov=40/58 RA 336 . NC_012971 3481767 0 C T bias_e_value=4558950 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=150.1 fisher_strand_p_value=1 frequency=3.163e-01 ks_quality_p_value=1 major_base=C major_cov=27/40 major_frequency=6.837e-01 minor_base=T minor_cov=13/18 new_cov=13/18 polymorphism_frequency=3.163e-01 polymorphism_score=86.7 prediction=polymorphism ref_cov=27/40 total_cov=40/58 RA 337 . NC_012971 3481778 0 C G bias_e_value=4468630 bias_p_value=0.980187 consensus_reject=FREQUENCY_CUTOFF consensus_score=130.5 fisher_strand_p_value=0.827568 frequency=3.511e-01 ks_quality_p_value=0.975942 major_base=C major_cov=24/37 major_frequency=6.489e-01 minor_base=G minor_cov=14/19 new_cov=14/19 polymorphism_frequency=3.511e-01 polymorphism_score=111.7 prediction=polymorphism ref_cov=24/37 total_cov=39/56 RA 338 . NC_012971 3482990 0 A G bias_e_value=4512450 bias_p_value=0.989799 consensus_reject=FREQUENCY_CUTOFF consensus_score=74.1 fisher_strand_p_value=0.86061 frequency=5.802e-01 ks_quality_p_value=1 major_base=G major_cov=40/36 major_frequency=5.802e-01 minor_base=A minor_cov=30/25 new_cov=40/36 polymorphism_frequency=5.802e-01 polymorphism_score=152.5 prediction=polymorphism ref_cov=30/25 total_cov=71/61 RA 339 . NC_012971 3483028 0 T A bias_e_value=3305090 bias_p_value=0.724968 consensus_reject=FREQUENCY_CUTOFF consensus_score=83.5 fisher_strand_p_value=0.357494 frequency=5.798e-01 ks_quality_p_value=0.999299 major_base=A major_cov=31/38 major_frequency=5.798e-01 minor_base=T minor_cov=27/23 new_cov=31/38 polymorphism_frequency=5.798e-01 polymorphism_score=194.7 prediction=polymorphism ref_cov=27/23 total_cov=59/61 RA 340 . NC_012971 3483030 0 G A bias_e_value=3959800 bias_p_value=0.868576 consensus_reject=FREQUENCY_CUTOFF consensus_score=80.6 fisher_strand_p_value=0.574892 frequency=5.932e-01 ks_quality_p_value=0.927669 major_base=A major_cov=32/38 major_frequency=5.932e-01 minor_base=G minor_cov=25/23 new_cov=32/38 polymorphism_frequency=5.932e-01 polymorphism_score=140.8 prediction=polymorphism ref_cov=25/23 total_cov=57/61 RA 341 . NC_012971 3483093 0 T C bias_e_value=3549380 bias_p_value=0.778551 consensus_reject=FREQUENCY_CUTOFF consensus_score=61.0 fisher_strand_p_value=0.429714 frequency=5.872e-01 ks_quality_p_value=0.96198 major_base=C major_cov=24/40 major_frequency=5.872e-01 minor_base=T minor_cov=21/24 new_cov=24/40 polymorphism_frequency=5.872e-01 polymorphism_score=137.9 prediction=polymorphism ref_cov=21/24 total_cov=46/64 RA 342 . NC_012971 3483975 0 C T bias_e_value=573363 bias_p_value=0.125766 consensus_reject=FREQUENCY_CUTOFF consensus_score=29.4 fisher_strand_p_value=0.0529825 frequency=4.352e-01 ks_quality_p_value=0.516117 major_base=C major_cov=22/39 major_frequency=5.648e-01 minor_base=T minor_cov=26/21 new_cov=26/21 polymorphism_frequency=4.352e-01 polymorphism_score=145.4 prediction=polymorphism ref_cov=22/39 total_cov=48/60 RA 343 . NC_012971 3483977 0 G A bias_e_value=840044 bias_p_value=0.184262 consensus_reject=FREQUENCY_CUTOFF consensus_score=33.5 fisher_strand_p_value=0.0529825 frequency=4.352e-01 ks_quality_p_value=0.847592 major_base=G major_cov=22/39 major_frequency=5.648e-01 minor_base=A minor_cov=26/21 new_cov=26/21 polymorphism_frequency=4.352e-01 polymorphism_score=138.0 prediction=polymorphism ref_cov=22/39 total_cov=48/60 RA 344 . NC_012971 3483978 0 G C bias_e_value=780296 bias_p_value=0.171157 consensus_reject=FREQUENCY_CUTOFF consensus_score=56.1 fisher_strand_p_value=0.0493988 frequency=4.299e-01 ks_quality_p_value=0.824885 major_base=G major_cov=22/39 major_frequency=5.701e-01 minor_base=C minor_cov=26/20 new_cov=26/20 polymorphism_frequency=4.299e-01 polymorphism_score=159.1 prediction=polymorphism ref_cov=22/39 total_cov=48/60 RA 345 . NC_012971 3483982 0 T G bias_e_value=411368 bias_p_value=0.090233 consensus_reject=FREQUENCY_CUTOFF consensus_score=27.7 fisher_strand_p_value=0.0338508 frequency=4.234e-01 ks_quality_p_value=0.531157 major_base=T major_cov=22/42 major_frequency=5.766e-01 minor_base=G minor_cov=26/21 new_cov=26/21 polymorphism_frequency=4.234e-01 polymorphism_score=153.7 prediction=polymorphism ref_cov=22/42 total_cov=48/63 RA 346 . NC_012971 3484075 0 T A bias_e_value=2323140 bias_p_value=0.509577 consensus_reject=FREQUENCY_CUTOFF consensus_score=23.0 fisher_strand_p_value=0.192441 frequency=4.831e-01 ks_quality_p_value=1 major_base=T major_cov=22/39 major_frequency=5.169e-01 minor_base=A minor_cov=28/29 new_cov=28/29 polymorphism_frequency=4.831e-01 polymorphism_score=225.0 prediction=polymorphism ref_cov=22/39 total_cov=50/68 RA 347 . NC_012971 3484086 0 C T bias_e_value=2842980 bias_p_value=0.623604 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-3.1 fisher_strand_p_value=0.274098 frequency=4.918e-01 ks_quality_p_value=0.985285 major_base=C major_cov=24/38 major_frequency=5.082e-01 minor_base=T minor_cov=30/30 new_cov=30/30 polymorphism_frequency=4.918e-01 polymorphism_score=191.6 prediction=polymorphism ref_cov=24/38 total_cov=54/68 RA 348 . NC_012971 3484130 0 A T bias_e_value=2874210 bias_p_value=0.630454 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-6.5 fisher_strand_p_value=0.27981 frequency=5.083e-01 ks_quality_p_value=0.984009 major_base=T major_cov=32/29 major_frequency=5.083e-01 minor_base=A minor_cov=25/34 new_cov=32/29 polymorphism_frequency=5.083e-01 polymorphism_score=236.9 prediction=polymorphism ref_cov=25/34 total_cov=57/63 RA 349 . NC_012971 3484133 0 A C bias_e_value=1540460 bias_p_value=0.337898 consensus_reject=FREQUENCY_CUTOFF consensus_score=18.1 fisher_strand_p_value=0.274898 frequency=5.169e-01 ks_quality_p_value=0.375927 major_base=C major_cov=32/29 major_frequency=5.169e-01 minor_base=A minor_cov=24/33 new_cov=32/29 polymorphism_frequency=5.169e-01 polymorphism_score=166.6 prediction=polymorphism ref_cov=24/33 total_cov=56/62 RA 350 . NC_012971 3484234 0 A G bias_e_value=2948140 bias_p_value=0.646671 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=3.3 fisher_strand_p_value=0.449974 frequency=5.310e-01 ks_quality_p_value=0.64034 major_base=G major_cov=30/30 major_frequency=5.310e-01 minor_base=A minor_cov=22/31 new_cov=30/30 polymorphism_frequency=5.310e-01 polymorphism_score=166.8 prediction=polymorphism ref_cov=22/31 total_cov=53/61 RA 351 . NC_012971 3484399 0 T C bias_e_value=4539520 bias_p_value=0.995738 consensus_reject=FREQUENCY_CUTOFF consensus_score=73.5 fisher_strand_p_value=1 frequency=2.647e-01 ks_quality_p_value=0.909106 major_base=T major_cov=25/25 major_frequency=7.353e-01 minor_base=C minor_cov=9/9 new_cov=9/9 polymorphism_frequency=2.647e-01 polymorphism_score=42.9 prediction=polymorphism ref_cov=25/25 total_cov=34/34 RA 352 . NC_012971 3484526 0 C A bias_e_value=4150940 bias_p_value=0.910504 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.2 fisher_strand_p_value=0.607962 frequency=3.377e-01 ks_quality_p_value=0.99998 major_base=C major_cov=33/18 major_frequency=6.623e-01 minor_base=A minor_cov=19/7 new_cov=19/7 polymorphism_frequency=3.377e-01 polymorphism_score=57.7 prediction=polymorphism ref_cov=33/18 total_cov=52/25 RA 353 . NC_012971 3484590 0 A G bias_e_value=4490010 bias_p_value=0.984877 consensus_reject=FREQUENCY_CUTOFF consensus_score=30.1 fisher_strand_p_value=0.831205 frequency=4.787e-01 ks_quality_p_value=1 major_base=A major_cov=32/17 major_frequency=5.213e-01 minor_base=G minor_cov=28/17 new_cov=28/17 polymorphism_frequency=4.787e-01 polymorphism_score=134.6 prediction=polymorphism ref_cov=32/17 total_cov=60/35 RA 354 . NC_012971 3484596 0 A G bias_e_value=4476570 bias_p_value=0.98193 consensus_reject=FREQUENCY_CUTOFF consensus_score=27.3 fisher_strand_p_value=0.832487 frequency=4.896e-01 ks_quality_p_value=0.980215 major_base=A major_cov=32/17 major_frequency=5.104e-01 minor_base=G minor_cov=29/18 new_cov=29/18 polymorphism_frequency=4.896e-01 polymorphism_score=140.3 prediction=polymorphism ref_cov=32/17 total_cov=61/35 RA 355 . NC_012971 3484642 0 G C bias_e_value=4486590 bias_p_value=0.984127 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=4.6 fisher_strand_p_value=0.836946 frequency=5.408e-01 ks_quality_p_value=0.988354 major_base=C major_cov=33/20 major_frequency=5.408e-01 minor_base=G minor_cov=29/16 new_cov=33/20 polymorphism_frequency=5.408e-01 polymorphism_score=153.2 prediction=polymorphism ref_cov=29/16 total_cov=62/36 RA 356 . NC_012971 3484804 0 A G bias_e_value=4551370 bias_p_value=0.998336 consensus_reject=FREQUENCY_CUTOFF consensus_score=65.0 fisher_strand_p_value=1 frequency=5.000e-01 ks_quality_p_value=0.942873 major_base=A major_cov=36/32 major_frequency=5.000e-01 minor_base=G minor_cov=35/33 new_cov=35/33 polymorphism_frequency=5.000e-01 polymorphism_score=213.2 prediction=polymorphism ref_cov=36/32 total_cov=71/65 RA 357 . NC_012971 3484806 0 C G bias_e_value=4558950 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=74.5 fisher_strand_p_value=1 frequency=5.037e-01 ks_quality_p_value=1 major_base=G major_cov=35/33 major_frequency=5.037e-01 minor_base=C minor_cov=35/32 new_cov=35/33 polymorphism_frequency=5.037e-01 polymorphism_score=249.3 prediction=polymorphism ref_cov=35/32 total_cov=70/65 RA 358 . NC_012971 3484950 0 T C bias_e_value=3576180 bias_p_value=0.784431 consensus_reject=FREQUENCY_CUTOFF consensus_score=73.8 fisher_strand_p_value=0.420093 frequency=4.805e-01 ks_quality_p_value=1 major_base=T major_cov=43/37 major_frequency=5.195e-01 minor_base=C minor_cov=34/40 new_cov=34/40 polymorphism_frequency=4.805e-01 polymorphism_score=227.4 prediction=polymorphism ref_cov=43/37 total_cov=77/77 RA 359 . NC_012971 3485921 0 G A bias_e_value=12.2489 bias_p_value=2.68677e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=216.9 fisher_strand_p_value=1.61475e-07 frequency=2.231e-01 ks_quality_p_value=1 major_base=G major_cov=48/46 major_frequency=7.769e-01 minor_base=A minor_cov=0/27 new_cov=0/27 polymorphism_frequency=2.231e-01 polymorphism_score=12.2 prediction=polymorphism ref_cov=48/46 total_cov=48/80 RA 360 . NC_012971 3485922 0 G A bias_e_value=21.7035 bias_p_value=4.76064e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=193.0 fisher_strand_p_value=2.96991e-07 frequency=2.087e-01 ks_quality_p_value=1 major_base=G major_cov=48/43 major_frequency=7.913e-01 minor_base=A minor_cov=0/24 new_cov=0/24 polymorphism_frequency=2.087e-01 polymorphism_score=14.1 prediction=polymorphism ref_cov=48/43 total_cov=48/80 RA 361 . NC_012971 3496959 0 C T bias_e_value=3737620 bias_p_value=0.819842 consensus_score=561.0 fisher_strand_p_value=0.463415 frequency=1 ks_quality_p_value=1 major_base=T major_cov=88/75 major_frequency=9.939e-01 minor_base=G minor_cov=0/1 new_cov=88/75 polymorphism_frequency=9.939e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=88/76 RA 362 . NC_012971 3503080 0 C T bias_e_value=0.0294194 bias_p_value=6.4531e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=264.6 fisher_strand_p_value=2.80644e-10 frequency=2.074e-01 ks_quality_p_value=1 major_base=C major_cov=41/66 major_frequency=7.926e-01 minor_base=T minor_cov=28/0 new_cov=28/0 polymorphism_frequency=2.074e-01 polymorphism_score=12.5 prediction=polymorphism ref_cov=41/66 total_cov=71/66 RA 363 . NC_012971 3561605 0 T C bias_e_value=4432160 bias_p_value=0.972188 consensus_reject=FREQUENCY_CUTOFF consensus_score=122.7 fisher_strand_p_value=0.773617 frequency=2.113e-01 ks_quality_p_value=1 major_base=T major_cov=30/26 major_frequency=7.887e-01 minor_base=C minor_cov=9/6 new_cov=9/6 polymorphism_frequency=2.113e-01 polymorphism_score=28.3 prediction=polymorphism ref_cov=30/26 total_cov=39/32 RA 364 . NC_012971 3562088 0 C T bias_e_value=2589180 bias_p_value=0.567934 consensus_reject=FREQUENCY_CUTOFF consensus_score=186.0 fisher_strand_p_value=0.229938 frequency=2.245e-01 ks_quality_p_value=1 major_base=C major_cov=46/30 major_frequency=7.755e-01 minor_base=T minor_cov=10/12 new_cov=10/12 polymorphism_frequency=2.245e-01 polymorphism_score=44.3 prediction=polymorphism ref_cov=46/30 total_cov=56/42 RA 365 . NC_012971 3604023 0 G T bias_e_value=0.00363996 bias_p_value=7.98421e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=215.2 fisher_strand_p_value=3.17158e-11 frequency=3.008e-01 ks_quality_p_value=1 major_base=G major_cov=50/36 major_frequency=6.992e-01 minor_base=T minor_cov=0/37 new_cov=0/37 polymorphism_frequency=3.008e-01 polymorphism_score=12.6 prediction=polymorphism ref_cov=50/36 total_cov=51/73 RA 366 . NC_012971 3631564 0 C A bias_e_value=2.78963e-10 bias_p_value=6.11902e-17 consensus_reject=FREQUENCY_CUTOFF consensus_score=417.7 fisher_strand_p_value=1.45442e-18 frequency=2.475e-01 ks_quality_p_value=1 major_base=C major_cov=51/98 major_frequency=7.525e-01 minor_base=A minor_cov=49/0 new_cov=49/0 polymorphism_frequency=2.475e-01 polymorphism_score=19.6 prediction=polymorphism ref_cov=51/98 total_cov=100/98 RA 367 . NC_012971 3706612 0 G T bias_e_value=0.0121578 bias_p_value=2.66681e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=315.5 fisher_strand_p_value=1.11503e-10 frequency=2.544e-01 ks_quality_p_value=1 major_base=G major_cov=61/65 major_frequency=7.456e-01 minor_base=T minor_cov=0/43 new_cov=0/43 polymorphism_frequency=2.544e-01 polymorphism_score=12.4 prediction=polymorphism ref_cov=61/65 total_cov=62/108 RA 368 . NC_012971 3722606 0 C G bias_e_value=1382280 bias_p_value=0.303202 consensus_reject=FREQUENCY_CUTOFF consensus_score=290.3 fisher_strand_p_value=0.088546 frequency=2.266e-01 ks_quality_p_value=1 major_base=C major_cov=39/60 major_frequency=7.734e-01 minor_base=G minor_cov=17/12 new_cov=17/12 polymorphism_frequency=2.266e-01 polymorphism_score=89.7 prediction=polymorphism ref_cov=39/60 total_cov=57/72 RA 369 . NC_012971 3722607 0 A T bias_e_value=1034890 bias_p_value=0.227001 consensus_reject=FREQUENCY_CUTOFF consensus_score=328.1 fisher_strand_p_value=0.05936 frequency=2.326e-01 ks_quality_p_value=1 major_base=A major_cov=39/60 major_frequency=7.674e-01 minor_base=T minor_cov=18/12 new_cov=18/12 polymorphism_frequency=2.326e-01 polymorphism_score=104.6 prediction=polymorphism ref_cov=39/60 total_cov=57/72 RA 370 . NC_012971 3722615 0 G A bias_e_value=1162400 bias_p_value=0.254971 consensus_reject=FREQUENCY_CUTOFF consensus_score=217.0 fisher_strand_p_value=0.0695579 frequency=2.742e-01 ks_quality_p_value=1 major_base=G major_cov=38/52 major_frequency=7.258e-01 minor_base=A minor_cov=21/13 new_cov=21/13 polymorphism_frequency=2.742e-01 polymorphism_score=89.1 prediction=polymorphism ref_cov=38/52 total_cov=59/65 RA 371 . NC_012971 3722620 0 A G bias_e_value=1242530 bias_p_value=0.272546 consensus_reject=FREQUENCY_CUTOFF consensus_score=248.6 fisher_strand_p_value=0.0766856 frequency=2.615e-01 ks_quality_p_value=0.994566 major_base=A major_cov=42/54 major_frequency=7.385e-01 minor_base=G minor_cov=21/13 new_cov=21/13 polymorphism_frequency=2.615e-01 polymorphism_score=89.3 prediction=polymorphism ref_cov=42/54 total_cov=63/67 RA 372 . NC_012971 3722627 0 C T bias_e_value=1258410 bias_p_value=0.27603 consensus_reject=FREQUENCY_CUTOFF consensus_score=242.6 fisher_strand_p_value=0.0776272 frequency=2.576e-01 ks_quality_p_value=1 major_base=C major_cov=43/55 major_frequency=7.424e-01 minor_base=T minor_cov=21/13 new_cov=21/13 polymorphism_frequency=2.576e-01 polymorphism_score=91.1 prediction=polymorphism ref_cov=43/55 total_cov=64/68 RA 373 . NC_012971 3722636 0 C T bias_e_value=2095190 bias_p_value=0.459577 consensus_reject=FREQUENCY_CUTOFF consensus_score=200.9 fisher_strand_p_value=0.166248 frequency=2.734e-01 ks_quality_p_value=0.983429 major_base=C major_cov=42/51 major_frequency=7.266e-01 minor_base=T minor_cov=21/14 new_cov=21/14 polymorphism_frequency=2.734e-01 polymorphism_score=89.2 prediction=polymorphism ref_cov=42/51 total_cov=64/65 RA 374 . NC_012971 3722639 0 G A bias_e_value=2001850 bias_p_value=0.439102 consensus_reject=FREQUENCY_CUTOFF consensus_score=228.5 fisher_strand_p_value=0.159751 frequency=2.538e-01 ks_quality_p_value=0.953987 major_base=G major_cov=44/53 major_frequency=7.462e-01 minor_base=A minor_cov=20/13 new_cov=20/13 polymorphism_frequency=2.538e-01 polymorphism_score=95.4 prediction=polymorphism ref_cov=44/53 total_cov=65/66 RA 375 . NC_012971 3722660 0 T C bias_e_value=4103500 bias_p_value=0.900097 consensus_reject=FREQUENCY_CUTOFF consensus_score=191.9 fisher_strand_p_value=0.587722 frequency=3.212e-01 ks_quality_p_value=1 major_base=T major_cov=48/45 major_frequency=6.788e-01 minor_base=C minor_cov=25/19 new_cov=25/19 polymorphism_frequency=3.212e-01 polymorphism_score=120.5 prediction=polymorphism ref_cov=48/45 total_cov=74/64 RA 376 . NC_012971 3722690 0 G A bias_e_value=4008930 bias_p_value=0.879353 consensus_reject=FREQUENCY_CUTOFF consensus_score=161.0 fisher_strand_p_value=0.718408 frequency=3.357e-01 ks_quality_p_value=0.766848 major_base=G major_cov=51/42 major_frequency=6.643e-01 minor_base=A minor_cov=28/19 new_cov=28/19 polymorphism_frequency=3.357e-01 polymorphism_score=139.3 prediction=polymorphism ref_cov=51/42 total_cov=79/62 RA 377 . NC_012971 3722693 0 A T bias_e_value=4058120 bias_p_value=0.890142 consensus_reject=FREQUENCY_CUTOFF consensus_score=210.0 fisher_strand_p_value=0.588799 frequency=3.381e-01 ks_quality_p_value=0.967272 major_base=A major_cov=49/43 major_frequency=6.619e-01 minor_base=T minor_cov=28/19 new_cov=28/19 polymorphism_frequency=3.381e-01 polymorphism_score=178.5 prediction=polymorphism ref_cov=49/43 total_cov=77/62 RA 378 . NC_012971 3722696 0 G C bias_e_value=3822280 bias_p_value=0.838412 consensus_reject=FREQUENCY_CUTOFF consensus_score=194.5 fisher_strand_p_value=0.588799 frequency=3.381e-01 ks_quality_p_value=0.829521 major_base=G major_cov=49/43 major_frequency=6.619e-01 minor_base=C minor_cov=28/19 new_cov=28/19 polymorphism_frequency=3.381e-01 polymorphism_score=159.2 prediction=polymorphism ref_cov=49/43 total_cov=77/62 RA 379 . NC_012971 3722729 0 T G bias_e_value=2894960 bias_p_value=0.635006 consensus_reject=FREQUENCY_CUTOFF consensus_score=120.3 fisher_strand_p_value=0.278883 frequency=3.407e-01 ks_quality_p_value=1 major_base=T major_cov=45/44 major_frequency=6.593e-01 minor_base=G minor_cov=28/18 new_cov=28/18 polymorphism_frequency=3.407e-01 polymorphism_score=133.4 prediction=polymorphism ref_cov=45/44 total_cov=73/62 RA 380 . NC_012971 3722747 0 A G bias_e_value=4558950 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=128.4 fisher_strand_p_value=1 frequency=3.780e-01 ks_quality_p_value=1 major_base=A major_cov=46/33 major_frequency=6.220e-01 minor_base=G minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.780e-01 polymorphism_score=141.9 prediction=polymorphism ref_cov=46/33 total_cov=74/53 RA 381 . NC_012971 3722761 0 T C bias_e_value=4339600 bias_p_value=0.951886 consensus_reject=FREQUENCY_CUTOFF consensus_score=136.8 fisher_strand_p_value=0.706284 frequency=3.548e-01 ks_quality_p_value=1 major_base=T major_cov=47/33 major_frequency=6.452e-01 minor_base=C minor_cov=24/20 new_cov=24/20 polymorphism_frequency=3.548e-01 polymorphism_score=127.1 prediction=polymorphism ref_cov=47/33 total_cov=74/53 RA 382 . NC_012971 3722772 0 G A bias_e_value=4549930 bias_p_value=0.998021 consensus_reject=FREQUENCY_CUTOFF consensus_score=86.7 fisher_strand_p_value=1 frequency=3.934e-01 ks_quality_p_value=0.937758 major_base=G major_cov=44/30 major_frequency=6.066e-01 minor_base=A minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.934e-01 polymorphism_score=152.6 prediction=polymorphism ref_cov=44/30 total_cov=72/50 RA 383 . NC_012971 3722774 0 A T bias_e_value=4551230 bias_p_value=0.998305 consensus_reject=FREQUENCY_CUTOFF consensus_score=128.2 fisher_strand_p_value=1 frequency=3.852e-01 ks_quality_p_value=0.942345 major_base=A major_cov=44/31 major_frequency=6.148e-01 minor_base=T minor_cov=28/19 new_cov=28/19 polymorphism_frequency=3.852e-01 polymorphism_score=182.8 prediction=polymorphism ref_cov=44/31 total_cov=72/51 RA 384 . NC_012971 3722775 0 G T bias_e_value=4341540 bias_p_value=0.952311 consensus_reject=FREQUENCY_CUTOFF consensus_score=110.2 fisher_strand_p_value=0.710545 frequency=4.065e-01 ks_quality_p_value=0.995728 major_base=G major_cov=44/29 major_frequency=5.935e-01 minor_base=T minor_cov=28/22 new_cov=28/22 polymorphism_frequency=4.065e-01 polymorphism_score=138.1 prediction=polymorphism ref_cov=44/29 total_cov=72/51 RA 385 . NC_012971 3722777 0 A . bias_e_value=4505210 bias_p_value=0.988211 consensus_reject=FREQUENCY_CUTOFF consensus_score=253.7 fisher_strand_p_value=0.85053 frequency=3.802e-01 ks_quality_p_value=0.99988 major_base=A major_cov=44/31 major_frequency=6.198e-01 minor_base=. minor_cov=28/18 new_cov=28/18 polymorphism_frequency=3.802e-01 polymorphism_score=206.2 prediction=polymorphism ref_cov=44/31 total_cov=72/51 RA 386 . NC_012971 3722778 0 G T bias_e_value=4558950 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=122.4 fisher_strand_p_value=1 frequency=3.934e-01 ks_quality_p_value=1 major_base=G major_cov=44/30 major_frequency=6.066e-01 minor_base=T minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.934e-01 polymorphism_score=131.0 prediction=polymorphism ref_cov=44/30 total_cov=72/51 RA 387 . NC_012971 3722783 1 . C bias_e_value=3019890 bias_p_value=0.662409 consensus_reject=FREQUENCY_CUTOFF consensus_score=119.1 fisher_strand_p_value=1 frequency=3.770e-01 ks_quality_p_value=0.301012 major_base=. major_cov=44/32 major_frequency=6.230e-01 minor_base=C minor_cov=27/19 new_cov=27/19 polymorphism_frequency=3.770e-01 polymorphism_score=218.3 prediction=polymorphism ref_cov=44/32 total_cov=72/51 RA 388 . NC_012971 3722786 0 G T bias_e_value=4507900 bias_p_value=0.988802 consensus_reject=FREQUENCY_CUTOFF consensus_score=142.1 fisher_strand_p_value=0.854129 frequency=3.780e-01 ks_quality_p_value=1 major_base=G major_cov=44/35 major_frequency=6.220e-01 minor_base=T minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.780e-01 polymorphism_score=131.6 prediction=polymorphism ref_cov=44/35 total_cov=72/55 RA 389 . NC_012971 3722795 0 C A bias_e_value=4334310 bias_p_value=0.950726 consensus_reject=FREQUENCY_CUTOFF consensus_score=118.5 fisher_strand_p_value=0.710324 frequency=3.902e-01 ks_quality_p_value=0.989647 major_base=C major_cov=40/35 major_frequency=6.098e-01 minor_base=A minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.902e-01 polymorphism_score=137.7 prediction=polymorphism ref_cov=40/35 total_cov=68/55 RA 390 . NC_012971 3722801 0 C T bias_e_value=4338950 bias_p_value=0.951743 consensus_reject=FREQUENCY_CUTOFF consensus_score=100.5 fisher_strand_p_value=0.712803 frequency=3.810e-01 ks_quality_p_value=0.99028 major_base=C major_cov=42/36 major_frequency=6.190e-01 minor_base=T minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.810e-01 polymorphism_score=146.4 prediction=polymorphism ref_cov=42/36 total_cov=70/56 RA 391 . NC_012971 3722810 0 T C bias_e_value=4348290 bias_p_value=0.953791 consensus_reject=FREQUENCY_CUTOFF consensus_score=120.0 fisher_strand_p_value=0.712803 frequency=3.810e-01 ks_quality_p_value=0.998627 major_base=T major_cov=42/36 major_frequency=6.190e-01 minor_base=C minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.810e-01 polymorphism_score=139.3 prediction=polymorphism ref_cov=42/36 total_cov=70/56 RA 392 . NC_012971 3722823 0 A C bias_e_value=4354590 bias_p_value=0.955172 consensus_reject=FREQUENCY_CUTOFF consensus_score=129.9 fisher_strand_p_value=0.715924 frequency=3.643e-01 ks_quality_p_value=1 major_base=A major_cov=44/38 major_frequency=6.357e-01 minor_base=C minor_cov=27/20 new_cov=27/20 polymorphism_frequency=3.643e-01 polymorphism_score=121.5 prediction=polymorphism ref_cov=44/38 total_cov=71/58 RA 393 . NC_012971 3722846 0 G C bias_e_value=4319390 bias_p_value=0.947453 consensus_reject=FREQUENCY_CUTOFF consensus_score=205.4 fisher_strand_p_value=0.698132 frequency=3.058e-01 ks_quality_p_value=0.993871 major_base=G major_cov=42/42 major_frequency=6.942e-01 minor_base=C minor_cov=17/20 new_cov=17/20 polymorphism_frequency=3.058e-01 polymorphism_score=118.1 prediction=polymorphism ref_cov=42/42 total_cov=59/62 RA 394 . NC_012971 3722847 0 A G bias_e_value=4475960 bias_p_value=0.981795 consensus_reject=FREQUENCY_CUTOFF consensus_score=166.5 fisher_strand_p_value=0.844036 frequency=3.109e-01 ks_quality_p_value=0.966019 major_base=A major_cov=40/42 major_frequency=6.891e-01 minor_base=G minor_cov=17/20 new_cov=17/20 polymorphism_frequency=3.109e-01 polymorphism_score=102.5 prediction=polymorphism ref_cov=40/42 total_cov=57/62 RA 395 . NC_012971 3722860 0 T C bias_e_value=4558950 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=190.2 fisher_strand_p_value=1 frequency=2.966e-01 ks_quality_p_value=1 major_base=T major_cov=40/43 major_frequency=7.034e-01 minor_base=C minor_cov=17/18 new_cov=17/18 polymorphism_frequency=2.966e-01 polymorphism_score=87.9 prediction=polymorphism ref_cov=40/43 total_cov=57/61 RA 396 . NC_012971 3722878 0 A T bias_e_value=4468200 bias_p_value=0.980094 consensus_reject=FREQUENCY_CUTOFF consensus_score=235.8 fisher_strand_p_value=0.828988 frequency=2.661e-01 ks_quality_p_value=0.973745 major_base=A major_cov=39/41 major_frequency=7.339e-01 minor_base=T minor_cov=13/16 new_cov=13/16 polymorphism_frequency=2.661e-01 polymorphism_score=105.4 prediction=polymorphism ref_cov=39/41 total_cov=53/57 RA 397 . NC_012971 3722882 0 C T bias_e_value=4425870 bias_p_value=0.970808 consensus_reject=FREQUENCY_CUTOFF consensus_score=181.7 fisher_strand_p_value=0.828868 frequency=2.636e-01 ks_quality_p_value=0.926944 major_base=C major_cov=40/41 major_frequency=7.364e-01 minor_base=T minor_cov=13/16 new_cov=13/16 polymorphism_frequency=2.636e-01 polymorphism_score=82.1 prediction=polymorphism ref_cov=40/41 total_cov=54/57 RA 398 . NC_012971 3723078 0 C T bias_e_value=3639800 bias_p_value=0.798384 consensus_reject=FREQUENCY_CUTOFF consensus_score=165.3 fisher_strand_p_value=0.466754 frequency=2.527e-01 ks_quality_p_value=0.935285 major_base=C major_cov=37/31 major_frequency=7.473e-01 minor_base=T minor_cov=15/8 new_cov=15/8 polymorphism_frequency=2.527e-01 polymorphism_score=65.1 prediction=polymorphism ref_cov=37/31 total_cov=53/39 RA 399 . NC_012971 3723088 0 A T bias_e_value=1660580 bias_p_value=0.364246 consensus_reject=FREQUENCY_CUTOFF consensus_score=171.4 fisher_strand_p_value=0.133013 frequency=3.137e-01 ks_quality_p_value=0.866392 major_base=A major_cov=39/31 major_frequency=6.863e-01 minor_base=T minor_cov=23/9 new_cov=23/9 polymorphism_frequency=3.137e-01 polymorphism_score=118.7 prediction=polymorphism ref_cov=39/31 total_cov=62/40 RA 400 . NC_012971 3723089 0 A G bias_e_value=1829690 bias_p_value=0.40134 consensus_reject=FREQUENCY_CUTOFF consensus_score=151.8 fisher_strand_p_value=0.133013 frequency=3.137e-01 ks_quality_p_value=1 major_base=A major_cov=39/31 major_frequency=6.863e-01 minor_base=G minor_cov=23/9 new_cov=23/9 polymorphism_frequency=3.137e-01 polymorphism_score=87.0 prediction=polymorphism ref_cov=39/31 total_cov=62/40 RA 401 . NC_012971 3723098 0 A G bias_e_value=2963190 bias_p_value=0.649971 consensus_reject=FREQUENCY_CUTOFF consensus_score=123.8 fisher_strand_p_value=0.290799 frequency=3.462e-01 ks_quality_p_value=1 major_base=A major_cov=39/29 major_frequency=6.538e-01 minor_base=G minor_cov=25/11 new_cov=25/11 polymorphism_frequency=3.462e-01 polymorphism_score=97.5 prediction=polymorphism ref_cov=39/29 total_cov=65/40 RA 402 . NC_012971 3723101 0 T G bias_e_value=1556580 bias_p_value=0.341435 consensus_reject=FREQUENCY_CUTOFF consensus_score=82.4 fisher_strand_p_value=0.20071 frequency=3.398e-01 ks_quality_p_value=0.52267 major_base=T major_cov=39/29 major_frequency=6.602e-01 minor_base=G minor_cov=25/10 new_cov=25/10 polymorphism_frequency=3.398e-01 polymorphism_score=112.1 prediction=polymorphism ref_cov=39/29 total_cov=64/39 RA 403 . NC_012971 3723109 0 T C bias_e_value=1907810 bias_p_value=0.418476 consensus_reject=FREQUENCY_CUTOFF consensus_score=136.3 fisher_strand_p_value=0.15366 frequency=3.303e-01 ks_quality_p_value=0.92179 major_base=T major_cov=40/33 major_frequency=6.697e-01 minor_base=C minor_cov=25/11 new_cov=25/11 polymorphism_frequency=3.303e-01 polymorphism_score=104.2 prediction=polymorphism ref_cov=40/33 total_cov=65/44 RA 404 . NC_012971 3723115 0 C T bias_e_value=2425210 bias_p_value=0.531966 consensus_reject=FREQUENCY_CUTOFF consensus_score=125.0 fisher_strand_p_value=0.214504 frequency=3.364e-01 ks_quality_p_value=0.961865 major_base=C major_cov=41/32 major_frequency=6.636e-01 minor_base=T minor_cov=26/11 new_cov=26/11 polymorphism_frequency=3.364e-01 polymorphism_score=111.4 prediction=polymorphism ref_cov=41/32 total_cov=67/43 RA 405 . NC_012971 3723135 0 C A bias_e_value=2549580 bias_p_value=0.559246 consensus_reject=FREQUENCY_CUTOFF consensus_score=115.2 fisher_strand_p_value=0.685411 frequency=3.694e-01 ks_quality_p_value=0.326926 major_base=C major_cov=42/28 major_frequency=6.306e-01 minor_base=A minor_cov=27/14 new_cov=27/14 polymorphism_frequency=3.694e-01 polymorphism_score=111.8 prediction=polymorphism ref_cov=42/28 total_cov=69/45 RA 406 . NC_012971 3723139 0 C T bias_e_value=3628600 bias_p_value=0.795928 consensus_reject=FREQUENCY_CUTOFF consensus_score=120.0 fisher_strand_p_value=0.433597 frequency=3.565e-01 ks_quality_p_value=1 major_base=C major_cov=43/31 major_frequency=6.435e-01 minor_base=T minor_cov=27/14 new_cov=27/14 polymorphism_frequency=3.565e-01 polymorphism_score=122.2 prediction=polymorphism ref_cov=43/31 total_cov=70/45 RA 407 . NC_012971 3723172 0 T C bias_e_value=4107660 bias_p_value=0.901009 consensus_reject=FREQUENCY_CUTOFF consensus_score=121.2 fisher_strand_p_value=0.589443 frequency=3.885e-01 ks_quality_p_value=1 major_base=T major_cov=52/33 major_frequency=6.115e-01 minor_base=C minor_cov=36/18 new_cov=36/18 polymorphism_frequency=3.885e-01 polymorphism_score=150.4 prediction=polymorphism ref_cov=52/33 total_cov=88/51 RA 408 . NC_012971 3723174 0 A G bias_e_value=4104540 bias_p_value=0.900326 consensus_reject=FREQUENCY_CUTOFF consensus_score=125.7 fisher_strand_p_value=0.588153 frequency=3.913e-01 ks_quality_p_value=1 major_base=A major_cov=51/33 major_frequency=6.087e-01 minor_base=G minor_cov=36/18 new_cov=36/18 polymorphism_frequency=3.913e-01 polymorphism_score=148.1 prediction=polymorphism ref_cov=51/33 total_cov=87/51 RA 409 . NC_012971 3723179 0 G T bias_e_value=4101920 bias_p_value=0.899751 consensus_reject=FREQUENCY_CUTOFF consensus_score=138.0 fisher_strand_p_value=0.588153 frequency=3.913e-01 ks_quality_p_value=0.998161 major_base=G major_cov=51/33 major_frequency=6.087e-01 minor_base=T minor_cov=36/18 new_cov=36/18 polymorphism_frequency=3.913e-01 polymorphism_score=145.0 prediction=polymorphism ref_cov=51/33 total_cov=87/51 RA 410 . NC_012971 3723180 0 A T bias_e_value=3319450 bias_p_value=0.728116 consensus_reject=FREQUENCY_CUTOFF consensus_score=131.3 fisher_strand_p_value=0.474754 frequency=3.942e-01 ks_quality_p_value=0.758951 major_base=A major_cov=50/33 major_frequency=6.058e-01 minor_base=T minor_cov=36/18 new_cov=36/18 polymorphism_frequency=3.942e-01 polymorphism_score=210.1 prediction=polymorphism ref_cov=50/33 total_cov=87/51 RA 411 . NC_012971 3723184 0 C T bias_e_value=3600050 bias_p_value=0.789667 consensus_reject=FREQUENCY_CUTOFF consensus_score=95.5 fisher_strand_p_value=0.472664 frequency=3.913e-01 ks_quality_p_value=0.901658 major_base=C major_cov=50/34 major_frequency=6.087e-01 minor_base=T minor_cov=36/18 new_cov=36/18 polymorphism_frequency=3.913e-01 polymorphism_score=167.0 prediction=polymorphism ref_cov=50/34 total_cov=86/52 RA 412 . NC_012971 3723205 0 T C bias_e_value=4514640 bias_p_value=0.99028 consensus_reject=FREQUENCY_CUTOFF consensus_score=89.8 fisher_strand_p_value=0.863855 frequency=4.247e-01 ks_quality_p_value=1 major_base=T major_cov=51/33 major_frequency=5.753e-01 minor_base=C minor_cov=39/23 new_cov=39/23 polymorphism_frequency=4.247e-01 polymorphism_score=176.3 prediction=polymorphism ref_cov=51/33 total_cov=92/56 RA 413 . NC_012971 3723211 0 C T bias_e_value=4058150 bias_p_value=0.89015 consensus_reject=FREQUENCY_CUTOFF consensus_score=53.1 fisher_strand_p_value=0.6123 frequency=4.392e-01 ks_quality_p_value=0.930169 major_base=C major_cov=50/33 major_frequency=5.608e-01 minor_base=T minor_cov=42/23 new_cov=42/23 polymorphism_frequency=4.392e-01 polymorphism_score=203.3 prediction=polymorphism ref_cov=50/33 total_cov=92/56 RA 414 . NC_012971 3723217 0 C A bias_e_value=4384350 bias_p_value=0.9617 consensus_reject=FREQUENCY_CUTOFF consensus_score=78.5 fisher_strand_p_value=0.736319 frequency=4.503e-01 ks_quality_p_value=1 major_base=C major_cov=51/32 major_frequency=5.497e-01 minor_base=A minor_cov=44/24 new_cov=44/24 polymorphism_frequency=4.503e-01 polymorphism_score=193.1 prediction=polymorphism ref_cov=51/32 total_cov=95/56 RA 415 . NC_012971 3723247 0 C T bias_e_value=4411870 bias_p_value=0.967737 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=7.1 fisher_strand_p_value=0.756979 frequency=4.885e-01 ks_quality_p_value=1 major_base=C major_cov=53/36 major_frequency=5.115e-01 minor_base=T minor_cov=53/32 new_cov=53/32 polymorphism_frequency=4.885e-01 polymorphism_score=272.8 prediction=polymorphism ref_cov=53/36 total_cov=107/68 RA 416 . NC_012971 3723265 0 G A bias_e_value=1253050 bias_p_value=0.274855 consensus_reject=FREQUENCY_CUTOFF consensus_score=16.6 fisher_strand_p_value=0.4591 frequency=5.027e-01 ks_quality_p_value=0.168085 major_base=A major_cov=56/37 major_frequency=5.027e-01 minor_base=G minor_cov=50/42 new_cov=56/37 polymorphism_frequency=5.027e-01 polymorphism_score=289.0 prediction=polymorphism ref_cov=50/42 total_cov=106/79 RA 417 . NC_012971 3723271 0 G A bias_e_value=2319690 bias_p_value=0.508822 consensus_reject=FREQUENCY_CUTOFF consensus_score=25.5 fisher_strand_p_value=0.191983 frequency=4.897e-01 ks_quality_p_value=1 major_base=G major_cov=53/46 major_frequency=5.103e-01 minor_base=A minor_cov=60/35 new_cov=60/35 polymorphism_frequency=4.897e-01 polymorphism_score=296.4 prediction=polymorphism ref_cov=53/46 total_cov=113/83 RA 418 . NC_012971 3723274 0 C G bias_e_value=1950620 bias_p_value=0.427865 consensus_reject=FREQUENCY_CUTOFF consensus_score=51.2 fisher_strand_p_value=0.149145 frequency=4.847e-01 ks_quality_p_value=0.982188 major_base=C major_cov=53/48 major_frequency=5.153e-01 minor_base=G minor_cov=60/35 new_cov=60/35 polymorphism_frequency=4.847e-01 polymorphism_score=inf prediction=polymorphism ref_cov=53/48 total_cov=113/83 RA 419 . NC_012971 3723293 0 T C bias_e_value=1997530 bias_p_value=0.438155 consensus_reject=FREQUENCY_CUTOFF consensus_score=22.1 fisher_strand_p_value=0.151897 frequency=5.026e-01 ks_quality_p_value=1 major_base=C major_cov=58/40 major_frequency=5.026e-01 minor_base=T minor_cov=47/50 new_cov=58/40 polymorphism_frequency=5.026e-01 polymorphism_score=314.1 prediction=polymorphism ref_cov=47/50 total_cov=106/90 RA 420 . NC_012971 3723302 0 G A bias_e_value=3149980 bias_p_value=0.690945 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-4.4 fisher_strand_p_value=0.325594 frequency=5.074e-01 ks_quality_p_value=1 major_base=A major_cov=60/43 major_frequency=5.074e-01 minor_base=G minor_cov=51/49 new_cov=60/43 polymorphism_frequency=5.074e-01 polymorphism_score=300.8 prediction=polymorphism ref_cov=51/49 total_cov=111/93 RA 421 . NC_012971 3723426 0 A C bias_e_value=4558950 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=28.9 fisher_strand_p_value=1 frequency=5.078e-01 ks_quality_p_value=1 major_base=C major_cov=49/49 major_frequency=5.078e-01 minor_base=A minor_cov=48/47 new_cov=49/49 polymorphism_frequency=5.078e-01 polymorphism_score=270.1 prediction=polymorphism ref_cov=48/47 total_cov=97/96 RA 422 . NC_012971 3723496 0 G A bias_e_value=2626830 bias_p_value=0.576191 consensus_reject=FREQUENCY_CUTOFF consensus_score=152.2 fisher_strand_p_value=0.274097 frequency=4.311e-01 ks_quality_p_value=0.859556 major_base=G major_cov=39/56 major_frequency=5.689e-01 minor_base=A minor_cov=36/36 new_cov=36/36 polymorphism_frequency=4.311e-01 polymorphism_score=224.1 prediction=polymorphism ref_cov=39/56 total_cov=75/92 RA 423 . NC_012971 3723516 0 G A bias_e_value=3567650 bias_p_value=0.782558 consensus_reject=FREQUENCY_CUTOFF consensus_score=178.7 fisher_strand_p_value=0.419337 frequency=4.177e-01 ks_quality_p_value=0.99667 major_base=G major_cov=37/55 major_frequency=5.823e-01 minor_base=A minor_cov=31/35 new_cov=31/35 polymorphism_frequency=4.177e-01 polymorphism_score=206.0 prediction=polymorphism ref_cov=37/55 total_cov=68/92 RA 424 . NC_012971 3723526 0 C T bias_e_value=3623920 bias_p_value=0.794901 consensus_reject=FREQUENCY_CUTOFF consensus_score=189.2 fisher_strand_p_value=0.495546 frequency=3.836e-01 ks_quality_p_value=0.872513 major_base=C major_cov=35/55 major_frequency=6.164e-01 minor_base=T minor_cov=25/31 new_cov=25/31 polymorphism_frequency=3.836e-01 polymorphism_score=175.5 prediction=polymorphism ref_cov=35/55 total_cov=61/86 RA 425 . NC_012971 3723528 0 G T bias_e_value=3580750 bias_p_value=0.785432 consensus_reject=FREQUENCY_CUTOFF consensus_score=206.1 fisher_strand_p_value=0.492666 frequency=3.878e-01 ks_quality_p_value=0.855041 major_base=G major_cov=35/55 major_frequency=6.122e-01 minor_base=T minor_cov=26/31 new_cov=26/31 polymorphism_frequency=3.878e-01 polymorphism_score=155.2 prediction=polymorphism ref_cov=35/55 total_cov=61/86 RA 426 . NC_012971 3723534 0 C T bias_e_value=4557010 bias_p_value=0.999574 consensus_reject=FREQUENCY_CUTOFF consensus_score=225.9 fisher_strand_p_value=1 frequency=3.576e-01 ks_quality_p_value=0.970937 major_base=C major_cov=42/55 major_frequency=6.424e-01 minor_base=T minor_cov=24/30 new_cov=24/30 polymorphism_frequency=3.576e-01 polymorphism_score=165.2 prediction=polymorphism ref_cov=42/55 total_cov=66/85 RA 427 . NC_012971 3723537 0 T C bias_e_value=4142110 bias_p_value=0.908565 consensus_reject=FREQUENCY_CUTOFF consensus_score=220.0 fisher_strand_p_value=0.86485 frequency=3.667e-01 ks_quality_p_value=0.698478 major_base=T major_cov=41/54 major_frequency=6.333e-01 minor_base=C minor_cov=25/30 new_cov=25/30 polymorphism_frequency=3.667e-01 polymorphism_score=161.9 prediction=polymorphism ref_cov=41/54 total_cov=66/84 RA 428 . NC_012971 3723546 0 G C bias_e_value=4349490 bias_p_value=0.954054 consensus_reject=FREQUENCY_CUTOFF consensus_score=247.4 fisher_strand_p_value=0.712601 frequency=3.409e-01 ks_quality_p_value=1 major_base=G major_cov=41/46 major_frequency=6.591e-01 minor_base=C minor_cov=19/26 new_cov=19/26 polymorphism_frequency=3.409e-01 polymorphism_score=143.1 prediction=polymorphism ref_cov=41/46 total_cov=64/72 RA 429 . NC_012971 3723549 0 G A bias_e_value=4529730 bias_p_value=0.99359 consensus_reject=FREQUENCY_CUTOFF consensus_score=197.1 fisher_strand_p_value=1 frequency=3.630e-01 ks_quality_p_value=0.888932 major_base=G major_cov=41/45 major_frequency=6.370e-01 minor_base=A minor_cov=23/26 new_cov=23/26 polymorphism_frequency=3.630e-01 polymorphism_score=149.0 prediction=polymorphism ref_cov=41/45 total_cov=64/72 RA 430 . NC_012971 3723560 0 A G bias_e_value=4532840 bias_p_value=0.994272 consensus_reject=FREQUENCY_CUTOFF consensus_score=240.4 fisher_strand_p_value=1 frequency=3.158e-01 ks_quality_p_value=0.894897 major_base=A major_cov=46/45 major_frequency=6.842e-01 minor_base=G minor_cov=21/21 new_cov=21/21 polymorphism_frequency=3.158e-01 polymorphism_score=122.2 prediction=polymorphism ref_cov=46/45 total_cov=67/67 RA 431 . NC_012971 3723584 0 T A bias_e_value=2643380 bias_p_value=0.579822 consensus_reject=FREQUENCY_CUTOFF consensus_score=307.4 fisher_strand_p_value=0.258072 frequency=2.212e-01 ks_quality_p_value=0.922701 major_base=T major_cov=48/40 major_frequency=7.788e-01 minor_base=A minor_cov=10/15 new_cov=10/15 polymorphism_frequency=2.212e-01 polymorphism_score=87.3 prediction=polymorphism ref_cov=48/40 total_cov=58/56 RA 432 . NC_012971 3723588 0 A C bias_e_value=2815240 bias_p_value=0.617519 consensus_reject=FREQUENCY_CUTOFF consensus_score=261.4 fisher_strand_p_value=0.265446 frequency=2.174e-01 ks_quality_p_value=1 major_base=A major_cov=48/42 major_frequency=7.826e-01 minor_base=C minor_cov=10/15 new_cov=10/15 polymorphism_frequency=2.174e-01 polymorphism_score=68.0 prediction=polymorphism ref_cov=48/42 total_cov=58/57 RA 433 . NC_012971 3733869 0 T G consensus_score=355.1 frequency=1 major_base=G major_cov=55/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/41 RA 434 . NC_012971 3757620 0 G A consensus_score=294.6 frequency=1 major_base=A major_cov=31/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/52 RA 435 . NC_012971 3800334 0 C A bias_e_value=3.48299e-06 bias_p_value=7.63989e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=206.8 fisher_strand_p_value=2.35961e-14 frequency=3.526e-01 ks_quality_p_value=1 major_base=C major_cov=46/55 major_frequency=6.474e-01 minor_base=A minor_cov=55/0 new_cov=55/0 polymorphism_frequency=3.526e-01 polymorphism_score=36.8 prediction=polymorphism ref_cov=46/55 total_cov=101/55 RA 436 . NC_012971 3817054 0 T C bias_e_value=3764850 bias_p_value=0.825814 consensus_score=324.3 fisher_strand_p_value=0.471264 frequency=1 ks_quality_p_value=1 major_base=C major_cov=40/46 major_frequency=9.885e-01 minor_base=A minor_cov=1/0 new_cov=40/46 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/46 RA 437 . NC_012971 3997577 0 A G consensus_score=323.2 frequency=1 major_base=G major_cov=46/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/44 RA 438 . NC_012971 4045014 0 A C bias_e_value=884.901 bias_p_value=0.000194102 consensus_reject=FREQUENCY_CUTOFF consensus_score=135.2 fisher_strand_p_value=1.61282e-05 frequency=2.568e-01 ks_quality_p_value=1 major_base=A major_cov=26/29 major_frequency=7.432e-01 minor_base=C minor_cov=19/0 new_cov=19/0 polymorphism_frequency=2.568e-01 polymorphism_score=13.4 prediction=polymorphism ref_cov=26/29 total_cov=46/29 RA 439 . NC_012971 4072111 0 T C consensus_score=328.8 frequency=1 major_base=C major_cov=46/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/46 RA 440 . NC_012971 4108278 0 C T consensus_score=339.8 frequency=1 major_base=T major_cov=52/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/39 RA 441 . NC_012971 4179097 0 C . bias_e_value=4558400 bias_p_value=0.999879 consensus_score=427.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.984493 major_base=. major_cov=43/47 major_frequency=9.890e-01 minor_base=C minor_cov=0/1 new_cov=43/47 polymorphism_frequency=9.890e-01 polymorphism_score=-3.2 prediction=consensus ref_cov=0/1 total_cov=43/48 RA 442 . NC_012971 4268051 0 C A bias_e_value=1.50596e-07 bias_p_value=3.3033e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=248.3 fisher_strand_p_value=9.27529e-16 frequency=3.030e-01 ks_quality_p_value=1 major_base=C major_cov=28/64 major_frequency=6.970e-01 minor_base=A minor_cov=40/0 new_cov=40/0 polymorphism_frequency=3.030e-01 polymorphism_score=19.1 prediction=polymorphism ref_cov=28/64 total_cov=68/64 RA 443 . NC_012971 4341185 0 C A bias_e_value=3.29992e-10 bias_p_value=7.23832e-17 consensus_reject=FREQUENCY_CUTOFF consensus_score=324.7 fisher_strand_p_value=1.72753e-18 frequency=2.988e-01 ks_quality_p_value=1 major_base=C major_cov=37/78 major_frequency=7.012e-01 minor_base=A minor_cov=49/0 new_cov=49/0 polymorphism_frequency=2.988e-01 polymorphism_score=15.3 prediction=polymorphism ref_cov=37/78 total_cov=87/79 RA 444 . NC_012971 4395355 0 G T bias_e_value=3774960 bias_p_value=0.828033 consensus_score=340.2 fisher_strand_p_value=0.474227 frequency=1 ks_quality_p_value=1 major_base=T major_cov=51/45 major_frequency=9.897e-01 minor_base=C minor_cov=0/1 new_cov=51/45 polymorphism_frequency=9.897e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/46 MC 445 . NC_012971 543871 549187 532 0 left_inside_cov=34 left_outside_cov=36 right_inside_cov=0 right_outside_cov=104 MC 446 . NC_012971 550998 597471 0 575 left_inside_cov=0 left_outside_cov=123 right_inside_cov=35 right_outside_cov=38 MC 447 . NC_012971 748650 753098 0 0 left_inside_cov=0 left_outside_cov=115 right_inside_cov=1 right_outside_cov=116 MC 448 . NC_012971 754390 762860 0 0 left_inside_cov=35 left_outside_cov=36 right_inside_cov=7 right_outside_cov=106 MC 449 . NC_012971 763190 767804 0 0 left_inside_cov=31 left_outside_cov=46 right_inside_cov=33 right_outside_cov=36 MC 450 . NC_012971 767940 791180 0 0 left_inside_cov=0 left_outside_cov=83 right_inside_cov=31 right_outside_cov=37 MC 451 . NC_012971 1482315 1484648 0 2259 left_inside_cov=33 left_outside_cov=39 right_inside_cov=34 right_outside_cov=36 MC 452 . NC_012971 2068532 2069307 767 0 left_inside_cov=0 left_outside_cov=100 right_inside_cov=3 right_outside_cov=104 MC 453 . NC_012971 2517851 2519295 1434 0 left_inside_cov=0 left_outside_cov=92 right_inside_cov=1 right_outside_cov=93 MC 454 . NC_012971 2820977 2822422 0 0 left_inside_cov=0 left_outside_cov=108 right_inside_cov=1 right_outside_cov=108 MC 455 . NC_012971 3628743 3628944 137 0 left_inside_cov=35 left_outside_cov=36 right_inside_cov=35 right_outside_cov=36 MC 456 . NC_012971 3822341 3823781 0 1437 left_inside_cov=0 left_outside_cov=100 right_inside_cov=1 right_outside_cov=102 MC 457 . NC_012971 3944690 3946314 1169 94 left_inside_cov=35 left_outside_cov=36 right_inside_cov=34 right_outside_cov=36 MC 458 . NC_012971 4153661 4159658 0 0 left_inside_cov=0 left_outside_cov=102 right_inside_cov=0 right_outside_cov=101 JC 459 . NC_012971 1 1 NC_012971 4558953 -1 0 alignment_overlap=0 coverage_minus=70 coverage_plus=59 flanking_left=300 flanking_right=300 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=294 key=NC_012971__1__1__NC_012971__4558953__-1__0____300__300__0__0 max_left=282 max_left_minus=282 max_left_plus=243 max_min_left=149 max_min_left_minus=149 max_min_left_plus=144 max_min_right=149 max_min_right_minus=149 max_min_right_plus=148 max_pos_hash_score=590 max_right=299 max_right_minus=287 max_right_plus=299 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.32 new_junction_read_count=134 polymorphism_frequency=1.000e+00 pos_hash_score=80 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=129 JC 460 . NC_012971 74394 -1 NC_012971 74746 1 0 alignment_overlap=7 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.194e-02 junction_possible_overlap_registers=287 key=NC_012971__74394__-1__NC_012971__74739__1__7____300__300__0__0 max_left=150 max_left_minus=150 max_left_plus=150 max_min_left=45 max_min_left_minus=45 max_min_left_plus=29 max_min_right=47 max_min_right_minus=47 max_min_right_plus=47 max_pos_hash_score=576 max_right=190 max_right_minus=190 max_right_plus=135 neg_log10_pos_hash_p_value=8.9 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=4.194e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.93 side_1_overlap=7 side_1_possible_overlap_registers=294 side_1_read_count=94 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.92 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=91 side_2_redundant=0 total_non_overlap_reads=4 JC 461 . NC_012971 275640 -1 NC_012971 276169 1 0 alignment_overlap=10 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.613e-02 junction_possible_overlap_registers=284 key=NC_012971__275640__-1__NC_012971__276159__1__10____300__300__0__0 max_left=82 max_left_minus=82 max_left_plus=82 max_min_left=57 max_min_left_minus=57 max_min_left_plus=57 max_min_right=9 max_min_right_minus=9 max_min_right_plus=9 max_pos_hash_score=570 max_right=59 max_right_minus=59 max_right_plus=59 neg_log10_pos_hash_p_value=8.9 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=3.613e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.05 side_1_overlap=10 side_1_possible_overlap_registers=294 side_1_read_count=106 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.14 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=111 side_2_redundant=0 total_non_overlap_reads=4 JC 462 . NC_012971 536615 -1 NC_012971 762861 1 0 alignment_overlap=17 coverage_minus=44 coverage_plus=34 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=277 key=NC_012971__536615__-1__NC_012971__762844__1__17____300__300__0__0 max_left=274 max_left_minus=274 max_left_plus=273 max_min_left=140 max_min_left_minus=140 max_min_left_plus=137 max_min_right=140 max_min_right_minus=140 max_min_right_plus=140 max_pos_hash_score=556 max_right=278 max_right_minus=267 max_right_plus=278 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=1.04 new_junction_read_count=99 polymorphism_frequency=9.290e-01 pos_hash_score=47 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.15 side_1_overlap=17 side_1_possible_overlap_registers=294 side_1_read_count=15 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=277 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=78 JC 463 . NC_012971 549188 1 NC_012971 1099785 -1 0 alignment_overlap=0 coverage_minus=0 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_012971__549188__1__NC_012971__1099785__-1__0____300__300__0__1 max_left=2 max_left_minus=0 max_left_plus=2 max_min_left=2 max_min_left_minus=0 max_min_left_plus=2 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=590 max_right=287 max_right_minus=0 max_right_plus=287 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.09 new_junction_read_count=9 polymorphism_frequency=1.000e+00 pos_hash_score=4 prediction=consensus reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=5 JC 464 . NC_012971 549188 1 NC_012971 2827816 1 0 alignment_overlap=0 coverage_minus=56 coverage_plus=46 flanking_left=300 flanking_right=300 frequency=6.440e-01 junction_possible_overlap_registers=294 key=NC_012971__549188__1__NC_012971__2827816__1__0____300__300__0__0 max_left=295 max_left_minus=295 max_left_plus=281 max_min_left=147 max_min_left_minus=147 max_min_left_plus=138 max_min_right=142 max_min_right_minus=142 max_min_right_plus=141 max_pos_hash_score=590 max_right=287 max_right_minus=269 max_right_plus=287 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.03 new_junction_read_count=104 polymorphism_frequency=6.440e-01 pos_hash_score=62 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.14 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=115 side_2_redundant=0 total_non_overlap_reads=102 JC 465 . NC_012971 550553 1 NC_012971 788130 -1 0 alignment_overlap=1 coverage_minus=21 coverage_plus=10 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=293 key=NC_012971__550553__1__NC_012971__788131__-1__1____300__300__0__0 max_left=289 max_left_minus=289 max_left_plus=289 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=144 max_min_right_minus=144 max_min_right_plus=109 max_pos_hash_score=588 max_right=144 max_right_minus=144 max_right_plus=109 neg_log10_pos_hash_p_value=4.1 new_junction_coverage=0.44 new_junction_read_count=44 polymorphism_frequency=1.000e+00 pos_hash_score=18 prediction=consensus reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=1 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=31 JC 466 . NC_012971 550997 -1 NC_012971 1586961 -1 0 alignment_overlap=2 coverage_minus=69 coverage_plus=46 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=292 key=NC_012971__550997__-1__NC_012971__1586963__-1__2____300__300__0__0 max_left=296 max_left_minus=281 max_left_plus=296 max_min_left=148 max_min_left_minus=148 max_min_left_plus=144 max_min_right=148 max_min_right_minus=108 max_min_right_plus=148 max_pos_hash_score=586 max_right=295 max_right_minus=295 max_right_plus=291 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.22 new_junction_read_count=123 polymorphism_frequency=1.000e+00 pos_hash_score=71 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=2 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=292 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=115 JC 467 . NC_012971 656380 -1 NC_012971 656493 1 0 alignment_overlap=77 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.761e-02 junction_possible_overlap_registers=217 key=NC_012971__656380__-1__NC_012971__656416__1__77____300__300__0__0 max_left=132 max_left_minus=81 max_left_plus=132 max_min_left=81 max_min_left_minus=81 max_min_left_plus=81 max_min_right=90 max_min_right_minus=0 max_min_right_plus=90 max_pos_hash_score=436 max_right=108 max_right_minus=108 max_right_plus=108 neg_log10_pos_hash_p_value=8.0 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=5.761e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.71 side_1_overlap=77 side_1_possible_overlap_registers=294 side_1_read_count=72 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.60 side_2_overlap=0 side_2_possible_overlap_registers=217 side_2_read_count=45 side_2_redundant=0 total_non_overlap_reads=3 JC 468 . NC_012971 656615 -1 NC_012971 657008 1 0 alignment_overlap=78 coverage_minus=5 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.556e-01 junction_possible_overlap_registers=216 key=NC_012971__656615__-1__NC_012971__656930__1__78____300__300__0__0 max_left=116 max_left_minus=70 max_left_plus=116 max_min_left=52 max_min_left_minus=52 max_min_left_plus=52 max_min_right=65 max_min_right_minus=65 max_min_right_plus=65 max_pos_hash_score=434 max_right=198 max_right_minus=198 max_right_plus=198 neg_log10_pos_hash_p_value=5.8 new_junction_coverage=0.13 new_junction_read_count=10 polymorphism_frequency=1.556e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.46 side_1_overlap=78 side_1_possible_overlap_registers=294 side_1_read_count=47 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.00 side_2_overlap=0 side_2_possible_overlap_registers=216 side_2_read_count=74 side_2_redundant=0 total_non_overlap_reads=10 JC 469 . NC_012971 739215 1 NC_012971 739503 -1 0 alignment_overlap=76 coverage_minus=0 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=8.481e-02 junction_possible_overlap_registers=218 key=NC_012971__739215__1__NC_012971__739579__-1__76____300__300__0__0 max_left=3 max_left_minus=0 max_left_plus=3 max_min_left=3 max_min_left_minus=0 max_min_left_plus=3 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=438 max_right=221 max_right_minus=0 max_right_plus=221 neg_log10_pos_hash_p_value=7.4 new_junction_coverage=0.08 new_junction_read_count=6 polymorphism_frequency=8.481e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.17 side_1_overlap=76 side_1_possible_overlap_registers=294 side_1_read_count=118 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.56 side_2_overlap=0 side_2_possible_overlap_registers=218 side_2_read_count=42 side_2_redundant=0 total_non_overlap_reads=4 JC 470 . NC_012971 739785 -1 NC_012971 740008 1 0 alignment_overlap=76 coverage_minus=5 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.602e-01 junction_possible_overlap_registers=218 key=NC_012971__739785__-1__NC_012971__739932__1__76____300__300__0__0 max_left=194 max_left_minus=194 max_left_plus=184 max_min_left=98 max_min_left_minus=0 max_min_left_plus=98 max_min_right=70 max_min_right_minus=70 max_min_right_plus=24 max_pos_hash_score=438 max_right=157 max_right_minus=70 max_right_plus=157 neg_log10_pos_hash_p_value=4.7 new_junction_coverage=0.15 new_junction_read_count=11 polymorphism_frequency=1.602e-01 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.83 side_1_overlap=76 side_1_possible_overlap_registers=294 side_1_read_count=84 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.71 side_2_overlap=0 side_2_possible_overlap_registers=218 side_2_read_count=53 side_2_redundant=0 total_non_overlap_reads=10 JC 471 . NC_012971 739932 1 NC_012971 2397543 -1 -3 alignment_overlap=-3 coverage_minus=4 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.694e-02 junction_possible_overlap_registers=291 key=NC_012971__739932__1__NC_012971__2397543__-1__-3__GAG__300__300__0__0 max_left=233 max_left_minus=233 max_left_plus=48 max_min_left=77 max_min_left_minus=77 max_min_left_plus=48 max_min_right=69 max_min_right_minus=69 max_min_right_plus=0 max_pos_hash_score=584 max_right=256 max_right_minus=216 max_right_plus=256 neg_log10_pos_hash_p_value=7.9 new_junction_coverage=0.06 new_junction_read_count=6 polymorphism_frequency=6.694e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=71 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.97 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=98 side_2_redundant=0 total_non_overlap_reads=6 unique_read_sequence=GAG JC 472 . NC_012971 739932 1 NC_012971 2397543 -1 -2 alignment_overlap=-2 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=7.699e-02 junction_possible_overlap_registers=292 key=NC_012971__739932__1__NC_012971__2397543__-1__-2__GG__300__300__0__0 max_left=129 max_left_minus=129 max_left_plus=100 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=67 max_min_right_minus=45 max_min_right_plus=67 max_pos_hash_score=586 max_right=67 max_right_minus=45 max_right_plus=67 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.07 new_junction_read_count=7 polymorphism_frequency=7.699e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=71 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.97 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=98 side_2_redundant=0 total_non_overlap_reads=5 unique_read_sequence=GG JC 473 . NC_012971 739932 1 NC_012971 2397664 -1 -1 alignment_overlap=-1 coverage_minus=4 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=1.228e-01 junction_possible_overlap_registers=293 key=NC_012971__739932__1__NC_012971__2397664__-1__-1__G__300__300__0__0 max_left=129 max_left_minus=129 max_left_plus=100 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=78 max_min_right_minus=78 max_min_right_plus=68 max_pos_hash_score=588 max_right=78 max_right_minus=78 max_right_plus=68 neg_log10_pos_hash_p_value=8.0 new_junction_coverage=0.09 new_junction_read_count=9 polymorphism_frequency=1.228e-01 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=71 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.57 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=58 side_2_redundant=0 total_non_overlap_reads=6 unique_read_sequence=G JC 474 . NC_012971 739932 1 NC_012971 2397665 -1 -1 alignment_overlap=-1 coverage_minus=3 coverage_plus=0 flanking_left=300 flanking_right=300 frequency=4.426e-02 junction_possible_overlap_registers=293 key=NC_012971__739932__1__NC_012971__2397665__-1__-1__G__300__300__0__0 max_left=233 max_left_minus=233 max_left_plus=0 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=71 max_min_right_minus=71 max_min_right_plus=0 max_pos_hash_score=588 max_right=71 max_right_minus=71 max_right_plus=0 neg_log10_pos_hash_p_value=9.7 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=4.426e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=71 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.58 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=59 side_2_redundant=0 total_non_overlap_reads=3 unique_read_sequence=G JC 475 . NC_012971 740009 -1 NC_012971 740218 1 0 alignment_overlap=78 coverage_minus=6 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.269e-01 junction_possible_overlap_registers=216 key=NC_012971__740009__-1__NC_012971__740140__1__78____300__300__0__0 max_left=208 max_left_minus=208 max_left_plus=71 max_min_left=71 max_min_left_minus=9 max_min_left_plus=71 max_min_right=101 max_min_right_minus=101 max_min_right_plus=0 max_pos_hash_score=434 max_right=212 max_right_minus=212 max_right_plus=211 neg_log10_pos_hash_p_value=5.4 new_junction_coverage=0.13 new_junction_read_count=10 polymorphism_frequency=1.269e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.72 side_1_overlap=78 side_1_possible_overlap_registers=294 side_1_read_count=73 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.13 side_2_overlap=0 side_2_possible_overlap_registers=216 side_2_read_count=84 side_2_redundant=0 total_non_overlap_reads=10 JC 476 . NC_012971 748649 -1 NC_012971 753099 1 0 alignment_overlap=7 coverage_minus=62 coverage_plus=46 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=287 key=NC_012971__748649__-1__NC_012971__753092__1__7____300__300__0__0 max_left=283 max_left_minus=282 max_left_plus=283 max_min_left=141 max_min_left_minus=141 max_min_left_plus=136 max_min_right=141 max_min_right_minus=113 max_min_right_plus=141 max_pos_hash_score=576 max_right=292 max_right_minus=292 max_right_plus=287 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.16 new_junction_read_count=115 polymorphism_frequency=1.000e+00 pos_hash_score=65 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=7 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=108 JC 477 . NC_012971 767939 -1 NC_012971 1427848 -1 -99 alignment_overlap=-99 coverage_minus=24 coverage_plus=42 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=195 key=NC_012971__767939__-1__NC_012971__1427848__-1__-99__TGACCATTTCACAAGTGACAGAGTCAATATCGTATTCTGTCACTGTCAGGCTAATACAGCAATGCAATTCAACTACAGCAATGCCTCGTATTTAGGTGA__300__300__0__1 max_left=186 max_left_minus=167 max_left_plus=186 max_min_left=97 max_min_left_minus=97 max_min_left_plus=76 max_min_right=96 max_min_right_minus=96 max_min_right_plus=87 max_pos_hash_score=392 max_right=187 max_right_minus=180 max_right_plus=187 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.13 new_junction_read_count=76 polymorphism_frequency=1.000e+00 pos_hash_score=41 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=66 unique_read_sequence=TGACCATTTCACAAGTGACAGAGTCAATATCGTATTCTGTCACTGTCAGGCTAATACAGCAATGCAATTCAACTACAGCAATGCCTCGTATTTAGGTGA JC 478 . NC_012971 786156 1 NC_012971 1099785 -1 0 alignment_overlap=0 coverage_minus=0 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_012971__786156__1__NC_012971__1099785__-1__0____300__300__0__1 max_left=2 max_left_minus=0 max_left_plus=2 max_min_left=2 max_min_left_minus=0 max_min_left_plus=2 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=590 max_right=287 max_right_minus=0 max_right_plus=287 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.09 new_junction_read_count=9 polymorphism_frequency=1.000e+00 pos_hash_score=4 prediction=consensus reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=5 JC 479 . NC_012971 1147898 -1 NC_012971 1147989 1 0 alignment_overlap=9 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.366e-02 junction_possible_overlap_registers=285 key=NC_012971__1147898__-1__NC_012971__1147980__1__9____300__300__0__0 max_left=270 max_left_minus=270 max_left_plus=108 max_min_left=132 max_min_left_minus=132 max_min_left_plus=108 max_min_right=20 max_min_right_minus=20 max_min_right_plus=0 max_pos_hash_score=572 max_right=183 max_right_minus=159 max_right_plus=183 neg_log10_pos_hash_p_value=9.5 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=4.366e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.89 side_1_overlap=9 side_1_possible_overlap_registers=294 side_1_read_count=90 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.90 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=88 side_2_redundant=0 total_non_overlap_reads=3 JC 480 . NC_012971 1344734 -1 NC_012971 1344858 1 0 alignment_overlap=10 coverage_minus=3 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.725e-02 junction_possible_overlap_registers=284 key=NC_012971__1344734__-1__NC_012971__1344848__1__10____300__300__0__0 max_left=269 max_left_minus=269 max_left_plus=67 max_min_left=68 max_min_left_minus=68 max_min_left_plus=67 max_min_right=95 max_min_right_minus=95 max_min_right_plus=0 max_pos_hash_score=570 max_right=223 max_right_minus=222 max_right_plus=223 neg_log10_pos_hash_p_value=8.9 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=4.725e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.78 side_1_overlap=10 side_1_possible_overlap_registers=294 side_1_read_count=79 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.87 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=85 side_2_redundant=0 total_non_overlap_reads=4 JC 481 . NC_012971 2068531 -1 NC_012971 2069308 1 0 alignment_overlap=9 coverage_minus=47 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=285 key=NC_012971__2068531__-1__NC_012971__2069299__1__9____300__300__0__0 max_left=289 max_left_minus=289 max_left_plus=287 max_min_left=145 max_min_left_minus=117 max_min_left_plus=145 max_min_right=145 max_min_right_minus=144 max_min_right_plus=145 max_pos_hash_score=572 max_right=280 max_right_minus=265 max_right_plus=280 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.03 new_junction_read_count=101 polymorphism_frequency=1.000e+00 pos_hash_score=61 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=9 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=100 JC 482 . NC_012971 2135130 -1 NC_012971 2135131 1 -5 alignment_overlap=-5 coverage_minus=61 coverage_plus=48 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=289 key=NC_012971__2135130__-1__NC_012971__2135131__1__-5__GACAT__300__300__0__0 max_left=292 max_left_minus=292 max_left_plus=283 max_min_left=145 max_min_left_minus=137 max_min_left_plus=145 max_min_right=145 max_min_right_minus=141 max_min_right_plus=145 max_pos_hash_score=580 max_right=288 max_right_minus=288 max_right_plus=287 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.15 new_junction_read_count=114 polymorphism_frequency=1.000e+00 pos_hash_score=58 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=109 unique_read_sequence=GACAT JC 483 . NC_012971 2517850 -1 NC_012971 2519296 1 0 alignment_overlap=3 coverage_minus=44 coverage_plus=44 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=291 key=NC_012971__2517850__-1__NC_012971__2519293__1__3____300__300__0__0 max_left=294 max_left_minus=294 max_left_plus=269 max_min_left=143 max_min_left_minus=136 max_min_left_plus=143 max_min_right=142 max_min_right_minus=142 max_min_right_plus=140 max_pos_hash_score=584 max_right=284 max_right_minus=250 max_right_plus=284 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.92 new_junction_read_count=92 polymorphism_frequency=1.000e+00 pos_hash_score=59 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=3 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=88 JC 484 . NC_012971 2517850 -1 NC_012971 2519624 1 -2 alignment_overlap=-2 coverage_minus=2 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=7.987e-02 junction_possible_overlap_registers=292 key=NC_012971__2517850__-1__NC_012971__2519624__1__-2__TT__300__300__0__0 max_left=243 max_left_minus=125 max_left_plus=243 max_min_left=78 max_min_left_minus=78 max_min_left_plus=18 max_min_right=64 max_min_right_minus=64 max_min_right_plus=64 max_pos_hash_score=586 max_right=280 max_right_minus=220 max_right_plus=280 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.05 new_junction_read_count=5 polymorphism_frequency=7.987e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.15 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=116 side_2_redundant=0 total_non_overlap_reads=5 unique_read_sequence=TT JC 485 . NC_012971 2517850 -1 NC_012971 2519706 1 -88 alignment_overlap=-88 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=7.222e-02 junction_possible_overlap_registers=206 key=NC_012971__2517850__-1__NC_012971__2519706__1__-88__TTGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGTTGACTTGTGTTACATGAGCAACGCAGGTGCTTCACAGCAAA__300__300__0__0 max_left=111 max_left_minus=111 max_left_plus=111 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=73 max_min_right_minus=73 max_min_right_plus=73 max_pos_hash_score=414 max_right=73 max_right_minus=73 max_right_plus=73 neg_log10_pos_hash_p_value=7.7 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=7.222e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.09 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=110 side_2_redundant=0 total_non_overlap_reads=3 unique_read_sequence=TTGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGTTGACTTGTGTTACATGAGCAACGCAGGTGCTTCACAGCAAA JC 486 . NC_012971 2528134 -1 NC_012971 2528317 1 0 alignment_overlap=22 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.572e-02 junction_possible_overlap_registers=272 key=NC_012971__2528134__-1__NC_012971__2528295__1__22____300__300__0__0 max_left=243 max_left_minus=243 max_left_plus=104 max_min_left=104 max_min_left_minus=101 max_min_left_plus=104 max_min_right=34 max_min_right_minus=34 max_min_right_plus=0 max_pos_hash_score=546 max_right=191 max_right_minus=182 max_right_plus=191 neg_log10_pos_hash_p_value=8.0 new_junction_coverage=0.05 new_junction_read_count=5 polymorphism_frequency=6.572e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.77 side_1_overlap=22 side_1_possible_overlap_registers=294 side_1_read_count=78 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.75 side_2_overlap=0 side_2_possible_overlap_registers=272 side_2_read_count=70 side_2_redundant=0 total_non_overlap_reads=5 JC 487 . NC_012971 2653127 -1 NC_012971 2653311 1 0 alignment_overlap=12 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.513e-02 junction_possible_overlap_registers=282 key=NC_012971__2653127__-1__NC_012971__2653299__1__12____300__300__0__0 max_left=248 max_left_minus=248 max_left_plus=150 max_min_left=75 max_min_left_minus=0 max_min_left_plus=75 max_min_right=136 max_min_right_minus=40 max_min_right_plus=136 max_pos_hash_score=566 max_right=210 max_right_minus=40 max_right_plus=210 neg_log10_pos_hash_p_value=9.5 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.513e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.78 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=79 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.92 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=89 side_2_redundant=0 total_non_overlap_reads=3 JC 488 . NC_012971 2657908 -1 NC_012971 2658458 1 0 alignment_overlap=20 coverage_minus=3 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=5.672e-02 junction_possible_overlap_registers=274 key=NC_012971__2657908__-1__NC_012971__2658438__1__20____300__300__0__0 max_left=268 max_left_minus=268 max_left_plus=234 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=59 max_min_right_minus=59 max_min_right_plus=46 max_pos_hash_score=550 max_right=59 max_right_minus=59 max_right_plus=46 neg_log10_pos_hash_p_value=8.7 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=5.672e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.72 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=73 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.69 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=65 side_2_redundant=0 total_non_overlap_reads=4 JC 489 . NC_012971 2658241 -1 NC_012971 2658517 1 0 alignment_overlap=79 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=6.919e-02 junction_possible_overlap_registers=215 key=NC_012971__2658241__-1__NC_012971__2658438__1__79____300__300__0__0 max_left=87 max_left_minus=87 max_left_plus=9 max_min_left=87 max_min_left_minus=87 max_min_left_plus=9 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=432 max_right=211 max_right_minus=137 max_right_plus=211 neg_log10_pos_hash_p_value=7.9 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=6.919e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.42 side_1_overlap=79 side_1_possible_overlap_registers=294 side_1_read_count=42 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.68 side_2_overlap=0 side_2_possible_overlap_registers=215 side_2_read_count=50 side_2_redundant=0 total_non_overlap_reads=3 JC 490 . NC_012971 2736386 -1 NC_012971 2736814 1 0 alignment_overlap=29 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.771e-02 junction_possible_overlap_registers=265 key=NC_012971__2736386__-1__NC_012971__2736785__1__29____300__300__0__0 max_left=142 max_left_minus=142 max_left_plus=142 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=69 max_min_right_minus=69 max_min_right_plus=69 max_pos_hash_score=532 max_right=69 max_right_minus=69 max_right_plus=69 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.771e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.79 side_1_overlap=29 side_1_possible_overlap_registers=294 side_1_read_count=80 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.89 side_2_overlap=0 side_2_possible_overlap_registers=265 side_2_read_count=81 side_2_redundant=0 total_non_overlap_reads=3 JC 491 . NC_012971 2736448 -1 NC_012971 2736937 1 0 alignment_overlap=31 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.498e-02 junction_possible_overlap_registers=263 key=NC_012971__2736448__-1__NC_012971__2736906__1__31____300__300__0__0 max_left=37 max_left_minus=37 max_left_plus=37 max_min_left=37 max_min_left_minus=37 max_min_left_plus=37 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=528 max_right=69 max_right_minus=69 max_right_plus=46 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.498e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=31 side_1_possible_overlap_registers=294 side_1_read_count=71 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.13 side_2_overlap=0 side_2_possible_overlap_registers=263 side_2_read_count=102 side_2_redundant=0 total_non_overlap_reads=3 JC 492 . NC_012971 2736630 -1 NC_012971 2736997 1 0 alignment_overlap=29 coverage_minus=2 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=4.956e-02 junction_possible_overlap_registers=265 key=NC_012971__2736630__-1__NC_012971__2736968__1__29____300__300__0__0 max_left=242 max_left_minus=242 max_left_plus=137 max_min_left=96 max_min_left_minus=96 max_min_left_plus=67 max_min_right=97 max_min_right_minus=29 max_min_right_plus=97 max_pos_hash_score=532 max_right=148 max_right_minus=147 max_right_plus=148 neg_log10_pos_hash_p_value=7.9 new_junction_coverage=0.05 new_junction_read_count=5 polymorphism_frequency=4.956e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.62 side_1_overlap=29 side_1_possible_overlap_registers=294 side_1_read_count=63 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.48 side_2_overlap=0 side_2_possible_overlap_registers=265 side_2_read_count=135 side_2_redundant=0 total_non_overlap_reads=5 JC 493 . NC_012971 2785747 -1 NC_012971 2785968 1 0 alignment_overlap=83 coverage_minus=4 coverage_plus=6 flanking_left=300 flanking_right=300 frequency=1.588e-01 junction_possible_overlap_registers=211 key=NC_012971__2785747__-1__NC_012971__2785885__1__83____300__300__0__0 max_left=207 max_left_minus=168 max_left_plus=207 max_min_left=98 max_min_left_minus=21 max_min_left_plus=98 max_min_right=82 max_min_right_minus=82 max_min_right_plus=63 max_pos_hash_score=424 max_right=201 max_right_minus=201 max_right_plus=187 neg_log10_pos_hash_p_value=4.6 new_junction_coverage=0.14 new_junction_read_count=10 polymorphism_frequency=1.588e-01 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.63 side_1_overlap=83 side_1_possible_overlap_registers=294 side_1_read_count=64 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.83 side_2_overlap=0 side_2_possible_overlap_registers=211 side_2_read_count=60 side_2_redundant=0 total_non_overlap_reads=10 JC 494 . NC_012971 2820976 -1 NC_012971 2822423 1 0 alignment_overlap=4 coverage_minus=47 coverage_plus=56 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=290 key=NC_012971__2820976__-1__NC_012971__2822419__1__4____300__300__0__0 max_left=295 max_left_minus=290 max_left_plus=295 max_min_left=146 max_min_left_minus=128 max_min_left_plus=146 max_min_right=148 max_min_right_minus=148 max_min_right_plus=134 max_pos_hash_score=582 max_right=295 max_right_minus=283 max_right_plus=295 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.07 new_junction_read_count=107 polymorphism_frequency=1.000e+00 pos_hash_score=66 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=103 JC 495 . NC_012971 3136294 1 NC_012971 4046335 1 -53 alignment_overlap=-53 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.804e-02 junction_possible_overlap_registers=241 key=NC_012971__3136294__1__NC_012971__4046335__1__-53__GTACGTAATAAACCGTTCCGGCGGGTTTCAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0 max_left=219 max_left_minus=149 max_left_plus=219 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=108 max_min_right_minus=108 max_min_right_plus=56 max_pos_hash_score=484 max_right=108 max_right_minus=108 max_right_plus=56 neg_log10_pos_hash_p_value=7.9 new_junction_coverage=0.06 new_junction_read_count=5 polymorphism_frequency=5.804e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.97 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=98 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.99 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=100 side_2_redundant=0 total_non_overlap_reads=5 unique_read_sequence=GTACGTAATAAACCGTTCCGGCGGGTTTCAGATTGTTGAGTGCGCTTTATTCA JC 496 . NC_012971 3365925 -1 NC_012971 4153660 -1 0 alignment_overlap=0 coverage_minus=48 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_012971__3365925__-1__NC_012971__4153660__-1__0____300__300__1__0 max_left=297 max_left_minus=276 max_left_plus=297 max_min_left=148 max_min_left_minus=148 max_min_left_plus=148 max_min_right=148 max_min_right_minus=148 max_min_right_plus=140 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=283 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.01 new_junction_read_count=102 polymorphism_frequency=1.000e+00 pos_hash_score=69 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=101 JC 497 . NC_012971 3485246 -1 NC_012971 3628983 1 0 alignment_overlap=108 coverage_minus=40 coverage_plus=36 flanking_left=300 flanking_right=300 frequency=6.801e-01 junction_possible_overlap_registers=186 key=NC_012971__3485246__-1__NC_012971__3628875__1__108____300__300__0__0 max_left=174 max_left_minus=174 max_left_plus=147 max_min_left=93 max_min_left_minus=93 max_min_left_plus=92 max_min_right=95 max_min_right_minus=95 max_min_right_plus=93 max_pos_hash_score=374 max_right=187 max_right_minus=187 max_right_plus=185 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.22 new_junction_read_count=78 polymorphism_frequency=6.801e-01 pos_hash_score=50 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.15 side_1_overlap=108 side_1_possible_overlap_registers=294 side_1_read_count=116 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=186 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=76 JC 498 . NC_012971 3501564 -1 NC_012971 3501742 1 0 alignment_overlap=11 coverage_minus=3 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.917e-02 junction_possible_overlap_registers=283 key=NC_012971__3501564__-1__NC_012971__3501731__1__11____300__300__0__0 max_left=234 max_left_minus=234 max_left_plus=86 max_min_left=86 max_min_left_minus=55 max_min_left_plus=86 max_min_right=104 max_min_right_minus=104 max_min_right_plus=0 max_pos_hash_score=568 max_right=230 max_right_minus=230 max_right_plus=200 neg_log10_pos_hash_p_value=8.8 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=3.917e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.99 side_1_overlap=11 side_1_possible_overlap_registers=294 side_1_read_count=100 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.03 side_2_overlap=0 side_2_possible_overlap_registers=283 side_2_read_count=100 side_2_redundant=0 total_non_overlap_reads=4 JC 499 . NC_012971 3643247 -1 NC_012971 3643269 1 0 alignment_overlap=4 coverage_minus=4 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=6.682e-02 junction_possible_overlap_registers=290 key=NC_012971__3643247__-1__NC_012971__3643265__1__4____300__300__0__0 max_left=202 max_left_minus=202 max_left_plus=177 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=130 max_min_right_minus=130 max_min_right_plus=82 max_pos_hash_score=582 max_right=130 max_right_minus=130 max_right_plus=82 neg_log10_pos_hash_p_value=8.4 new_junction_coverage=0.08 new_junction_read_count=8 polymorphism_frequency=6.682e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.13 side_1_overlap=4 side_1_possible_overlap_registers=294 side_1_read_count=114 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.11 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=111 side_2_redundant=0 total_non_overlap_reads=5 JC 500 . NC_012971 3644070 -1 NC_012971 3644368 1 0 alignment_overlap=5 coverage_minus=3 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=6.821e-02 junction_possible_overlap_registers=289 key=NC_012971__3644070__-1__NC_012971__3644363__1__5____300__300__0__0 max_left=282 max_left_minus=282 max_left_plus=174 max_min_left=136 max_min_left_minus=0 max_min_left_plus=136 max_min_right=130 max_min_right_minus=130 max_min_right_plus=50 max_pos_hash_score=580 max_right=159 max_right_minus=130 max_right_plus=159 neg_log10_pos_hash_p_value=7.4 new_junction_coverage=0.07 new_junction_read_count=7 polymorphism_frequency=6.821e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.02 side_1_overlap=5 side_1_possible_overlap_registers=294 side_1_read_count=103 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.91 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=90 side_2_redundant=0 total_non_overlap_reads=7 JC 501 . NC_012971 3723604 -1 NC_012971 3723605 1 -11 alignment_overlap=-11 coverage_minus=8 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.476e-01 junction_possible_overlap_registers=283 key=NC_012971__3723604__-1__NC_012971__3723605__1__-11__CACTCATCATC__300__300__0__0 max_left=287 max_left_minus=287 max_left_plus=276 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=51 max_min_right_minus=51 max_min_right_plus=22 max_pos_hash_score=568 max_right=51 max_right_minus=51 max_right_plus=22 neg_log10_pos_hash_p_value=6.9 new_junction_coverage=0.17 new_junction_read_count=17 polymorphism_frequency=1.476e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.01 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=102 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.01 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=102 side_2_redundant=0 total_non_overlap_reads=12 unique_read_sequence=CACTCATCATC JC 502 . NC_012971 3822340 -1 NC_012971 3823782 1 0 alignment_overlap=5 coverage_minus=44 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=289 key=NC_012971__3822340__-1__NC_012971__3823777__1__5____300__300__0__0 max_left=294 max_left_minus=294 max_left_plus=292 max_min_left=143 max_min_left_minus=143 max_min_left_plus=139 max_min_right=138 max_min_right_minus=128 max_min_right_plus=138 max_pos_hash_score=580 max_right=294 max_right_minus=294 max_right_plus=281 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.01 new_junction_read_count=100 polymorphism_frequency=1.000e+00 pos_hash_score=59 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=5 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=97 JC 503 . NC_012971 4159659 1 NC_012971 4449936 1 0 alignment_overlap=0 coverage_minus=37 coverage_plus=62 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_012971__4159659__1__NC_012971__4449936__1__0____300__300__0__1 max_left=292 max_left_minus=292 max_left_plus=284 max_min_left=141 max_min_left_minus=141 max_min_left_plus=138 max_min_right=140 max_min_right_minus=109 max_min_right_plus=140 max_pos_hash_score=590 max_right=286 max_right_minus=266 max_right_plus=286 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=1.00 new_junction_read_count=101 polymorphism_frequency=1.000e+00 pos_hash_score=56 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=99 JC 504 . NC_012971 4188765 -1 NC_012971 4188913 1 0 alignment_overlap=11 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.656e-02 junction_possible_overlap_registers=283 key=NC_012971__4188765__-1__NC_012971__4188902__1__11____300__300__0__0 max_left=217 max_left_minus=217 max_left_plus=95 max_min_left=95 max_min_left_minus=0 max_min_left_plus=95 max_min_right=109 max_min_right_minus=109 max_min_right_plus=0 max_pos_hash_score=568 max_right=250 max_right_minus=109 max_right_plus=250 neg_log10_pos_hash_p_value=8.8 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=3.656e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.10 side_1_overlap=11 side_1_possible_overlap_registers=294 side_1_read_count=111 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.07 side_2_overlap=0 side_2_possible_overlap_registers=283 side_2_read_count=104 side_2_redundant=0 total_non_overlap_reads=4 JC 505 . NC_012971 4487090 -1 NC_012971 4487867 1 0 alignment_overlap=8 coverage_minus=75 coverage_plus=60 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=286 key=NC_012971__4487090__-1__NC_012971__4487859__1__8____300__300__0__0 max_left=291 max_left_minus=291 max_left_plus=279 max_min_left=141 max_min_left_minus=117 max_min_left_plus=141 max_min_right=126 max_min_right_minus=126 max_min_right_plus=112 max_pos_hash_score=574 max_right=288 max_right_minus=280 max_right_plus=288 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.40 new_junction_read_count=138 polymorphism_frequency=1.000e+00 pos_hash_score=73 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=135 UN 506 . NC_012971 15639 15640 UN 507 . NC_012971 15642 15642 UN 508 . NC_012971 15644 16450 UN 509 . NC_012971 23573 23791 UN 510 . NC_012971 227319 228252 UN 511 . NC_012971 228858 228858 UN 512 . NC_012971 228860 228860 UN 513 . NC_012971 228862 231541 UN 514 . NC_012971 241531 241741 UN 515 . NC_012971 263060 263061 UN 516 . NC_012971 263064 263277 UN 517 . NC_012971 285477 285477 UN 518 . NC_012971 285480 285496 UN 519 . NC_012971 336231 336835 UN 520 . NC_012971 350499 350737 UN 521 . NC_012971 350740 350740 UN 522 . NC_012971 373997 373997 UN 523 . NC_012971 374002 374003 UN 524 . NC_012971 374007 374007 UN 525 . NC_012971 374009 374009 UN 526 . NC_012971 374011 374223 UN 527 . NC_012971 374225 374226 UN 528 . NC_012971 426747 427557 UN 529 . NC_012971 493253 493254 UN 530 . NC_012971 493256 493256 UN 531 . NC_012971 493258 495091 UN 532 . NC_012971 495587 495594 UN 533 . NC_012971 543908 543908 UN 534 . NC_012971 543910 549187 UN 535 . NC_012971 550536 550565 UN 536 . 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NC_012971 3944313 3944318 UN 622 . NC_012971 3944320 3944329 UN 623 . NC_012971 3944747 3946228 UN 624 . NC_012971 3946230 3946232 UN 625 . NC_012971 3946813 3946814 UN 626 . NC_012971 3946822 3947337 UN 627 . NC_012971 4074967 4074967 UN 628 . NC_012971 4074969 4074969 UN 629 . NC_012971 4074971 4076278 UN 630 . NC_012971 4076286 4076287 UN 631 . NC_012971 4077122 4079708 UN 632 . NC_012971 4116224 4121010 UN 633 . NC_012971 4121023 4121023 UN 634 . NC_012971 4121038 4121038 UN 635 . NC_012971 4153661 4159658 UN 636 . NC_012971 4433989 4434197 UN 637 . NC_012971 4450214 4450214 UN 638 . NC_012971 4450216 4450440 UN 639 . NC_012971 4479308 4479308 UN 640 . NC_012971 4479322 4479526 UN 641 . NC_012971 4487091 4487866