#=GENOME_DIFF	1.0
#=CREATED	17:23:29 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9003_S27_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9003_S27_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9003_S27_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9003_S27_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9003_S27_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	479693521
#=CONVERTED-READS	1630690
#=INPUT-BASES	479790322
#=INPUT-READS	1631022
#=MAPPED-BASES	448851921
#=MAPPED-READS	1526724
SNP	1	214	NC_000913	109960	A
SNP	2	215	NC_000913	113438	T
SNP	3	217	NC_000913	246747	T
DEL	4	468,483	NC_000913	257908	776
DEL	5	469	NC_000913	279931	11471	between=IS1
SNP	6	218	NC_000913	313543	A
SNP	7	220	NC_000913	334188	A
SNP	8	221	NC_000913	339935	T
SNP	9	222	NC_000913	339941	T
SNP	10	223	NC_000913	339958	A
MOB	11	486,488	NC_000913	362107	IS5	1	4
SNP	12	227	NC_000913	466169	A
SUB	13	228,229	NC_000913	480295	2	AA
DEL	14	230	NC_000913	631618	1
DEL	15	470,498	NC_000913	678921	8930	mediated=IS5
SNP	16	231	NC_000913	690948	A
SNP	17	232	NC_000913	700038	A
MOB	18	494,496	NC_000913	792077	IS2	1	5
SNP	19	235	NC_000913	968837	A
SNP	20	236	NC_000913	1040126	T
SNP	21	237	NC_000913	1061935	A
SUB	22	239,240	NC_000913	1111727	2	TT
SNP	23	241	NC_000913	1169836	G
SNP	24	242	NC_000913	1189980	G
SNP	25	243	NC_000913	1196220	T
SNP	26	244	NC_000913	1196232	T
SNP	27	245	NC_000913	1196245	C
SNP	28	246	NC_000913	1196247	G
SNP	29	247	NC_000913	1196277	T
SNP	30	248	NC_000913	1196280	C
SNP	31	249	NC_000913	1196283	G
SNP	32	250	NC_000913	1196292	T
MOB	33	495,509	NC_000913	1217464	IS2	-1	5
SNP	34	257	NC_000913	1290644	T
SNP	35	258	NC_000913	1301992	T
SNP	36	259	NC_000913	1306736	G
SNP	37	260	NC_000913	1310770	G
SNP	38	262	NC_000913	1337394	G
SNP	39	264	NC_000913	1357202	T
SNP	40	265	NC_000913	1358859	C
SNP	41	266	NC_000913	1381704	C
SNP	42	267	NC_000913	1383033	T
SNP	43	268	NC_000913	1449061	G
SNP	44	269	NC_000913	1484291	T
SNP	45	277	NC_000913	1643679	T
SNP	46	278	NC_000913	1652331	C
MOB	47	520,521	NC_000913	1656167	IS2	-1	5
MOB	48	522,524	NC_000913	1671703	IS2	-1	5
SNP	49	279	NC_000913	1703430	T
SNP	50	280	NC_000913	1721136	T
MOB	51	517,518	NC_000913	1743490	IS5	1	4
SNP	52	281	NC_000913	1776715	T
SNP	53	283	NC_000913	1856968	A
SNP	54	284	NC_000913	1894839	C
SNP	55	286	NC_000913	1987499	A
SNP	56	287	NC_000913	2040433	A
DEL	57	289	NC_000913	2096437	1
DEL	58	292,293	NC_000913	2173363	2
SNP	59	294	NC_000913	2188087	C
SNP	60	295	NC_000913	2239760	T
SNP	61	297	NC_000913	2384808	T
SNP	62	298	NC_000913	2410419	A
MOB	63	530,540	NC_000913	2452057	IS2	-1	5
SNP	64	301	NC_000913	2484827	T
MOB	65	534,537	NC_000913	2788791	IS5	-1	4
DEL	66	473,547	NC_000913	2867280	8
MOB	67	549,550	NC_000913	2913392	IS2	-1	5
MOB	68	552,553	NC_000913	3067128	IS5	-1	4
SUB	69	314,315	NC_000913	3088010	2	TT
INS	70	316	NC_000913	3101039	C	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=C
MOB	71	555,556	NC_000913	3136515	IS5	1	4
SNP	72	319	NC_000913	3263231	A
SNP	73	321	NC_000913	3308048	A
SNP	74	322	NC_000913	3316428	T
SUB	75	324,325	NC_000913	3336411	2	AT
MOB	76	558,559	NC_000913	3367057	IS2	-1	5
SNP	77	326	NC_000913	3388041	G
SNP	78	329	NC_000913	3436697	A
MOB	79	561,562	NC_000913	3437349	IS30	-1	2
SNP	80	330	NC_000913	3474425	G
SNP	81	331	NC_000913	3475993	C
INS	82	332	NC_000913	3560455	G
SNP	83	333	NC_000913	3566550	A
SNP	84	334	NC_000913	3629921	T
MOB	85	535,538	NC_000913	3638509	IS5	-1	4
SNP	86	336	NC_000913	3682515	T
SNP	87	337	NC_000913	3707947	A
DEL	88	475,564	NC_000913	3708467	168
SNP	89	338	NC_000913	3725176	G
SNP	90	339	NC_000913	3761230	A
SNP	91	340	NC_000913	3771979	T
INS	92	341	NC_000913	3815883	C
INS	93	565	NC_000913	3822651	CAGGAT	repeat_length=6	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CAGGAT
SNP	94	342	NC_000913	3823162	T
SNP	95	343	NC_000913	3869637	A
SNP	96	345	NC_000913	3878536	A
SNP	97	347	NC_000913	3912074	A
SNP	98	348	NC_000913	3926183	A
SNP	99	349	NC_000913	3926210	C
SNP	100	350	NC_000913	3926815	T
SNP	101	351	NC_000913	3927019	A
SNP	102	352	NC_000913	3927070	T
SNP	103	353	NC_000913	3927184	C
SNP	104	354	NC_000913	3927217	C
SNP	105	355	NC_000913	3927704	T
SNP	106	356	NC_000913	3927736	T
SNP	107	357	NC_000913	3927877	T
SNP	108	358	NC_000913	3927904	T
SNP	109	359	NC_000913	3927919	C
SNP	110	360	NC_000913	3927922	G
SNP	111	361	NC_000913	3927935	T
SUB	112	362,363	NC_000913	3927946	2	GT
SNP	113	364	NC_000913	3927964	T
SNP	114	365	NC_000913	3927973	T
SNP	115	366	NC_000913	3927977	C
SNP	116	367	NC_000913	3927985	A
SNP	117	368	NC_000913	3928057	C
SNP	118	369	NC_000913	3928102	T
SNP	119	370	NC_000913	3930314	T
SNP	120	371	NC_000913	3930650	G
DEL	121	476,566	NC_000913	3931455	7037
SNP	122	372	NC_000913	3952642	T
SNP	123	373	NC_000913	3959055	C
SNP	124	374	NC_000913	3959100	T
SNP	125	375	NC_000913	3959115	C
SNP	126	376	NC_000913	3959121	A
SNP	127	377	NC_000913	3959127	T
SNP	128	378	NC_000913	3959130	C
SNP	129	379	NC_000913	3959148	A
SNP	130	380	NC_000913	3959220	C
SNP	131	381	NC_000913	3959260	C
SUB	132	479,567	NC_000913	3959446	55	TAGCGATTCAGAGT
SNP	133	382	NC_000913	3959538	A
SNP	134	383	NC_000913	3959544	A
SNP	135	384	NC_000913	3959562	G
SNP	136	385	NC_000913	3959565	A
SNP	137	386	NC_000913	3959577	A
SNP	138	387	NC_000913	3959589	A
SNP	139	388	NC_000913	3959619	T
SNP	140	389	NC_000913	3959730	A
SNP	141	390	NC_000913	3959894	G
SNP	142	391	NC_000913	3959982	G
SNP	143	392	NC_000913	3960002	G
SNP	144	393	NC_000913	3960114	T
SNP	145	394	NC_000913	3960209	T
SNP	146	395	NC_000913	3960240	A
INS	147	396	NC_000913	3960251	A
SNP	148	397	NC_000913	3960284	A
SNP	149	398	NC_000913	3960483	A
SNP	150	399	NC_000913	3960553	A
SNP	151	400	NC_000913	3961108	C
SNP	152	401	NC_000913	3961120	T
SNP	153	402	NC_000913	3961124	G
SNP	154	403	NC_000913	3961126	G
SNP	155	404	NC_000913	3961135	G
INS	156	405	NC_000913	3961138	G
DEL	157	406	NC_000913	3961141	1
SNP	158	407	NC_000913	3961144	A
SUB	159	408,409	NC_000913	3961146	2	AG
SNP	160	410	NC_000913	3961159	T
SNP	161	411	NC_000913	3961280	G
SNP	162	412	NC_000913	3961306	C
SNP	163	413	NC_000913	3961351	A
SNP	164	414	NC_000913	3961587	T
SNP	165	415	NC_000913	3961980	T
SNP	166	416	NC_000913	3962444	A
SNP	167	417	NC_000913	3962449	A
SNP	168	418	NC_000913	3963807	A
SNP	169	419	NC_000913	3963843	G
SNP	170	420	NC_000913	3963849	T
SNP	171	421	NC_000913	3963921	G
SNP	172	422	NC_000913	3963966	A
SNP	173	423	NC_000913	3963972	T
SNP	174	424	NC_000913	3964008	G
SNP	175	425	NC_000913	3964040	G
SNP	176	426	NC_000913	3964071	A
SNP	177	427	NC_000913	3964074	C
DEL	178	428,429	NC_000913	3964361	2	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=6	repeat_seq=T
SNP	179	430	NC_000913	3964422	A
SNP	180	431	NC_000913	3964425	T
SNP	181	432	NC_000913	3993531	C
SNP	182	433	NC_000913	3996049	A
SNP	183	434	NC_000913	4011802	T
SNP	184	435	NC_000913	4031457	T
SNP	185	436	NC_000913	4031511	T
SNP	186	437	NC_000913	4084903	G
SNP	187	438	NC_000913	4092703	G
SNP	188	439	NC_000913	4113851	A
SNP	189	440	NC_000913	4143377	T
SNP	190	441	NC_000913	4161248	T
SNP	191	442	NC_000913	4164123	G
SNP	192	443	NC_000913	4215347	A
SNP	193	444	NC_000913	4223638	C
INS	194	445	NC_000913	4282332	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
SUB	195	446,447	NC_000913	4293781	2	AT
INS	196	450,451	NC_000913	4296381	GC
SNP	197	452	NC_000913	4325644	T
DEL	198	453	NC_000913	4366717	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=C
SNP	199	454	NC_000913	4392997	A
SNP	200	455	NC_000913	4393552	A
SNP	201	456	NC_000913	4396373	T
SNP	202	457	NC_000913	4396772	C
SNP	203	458	NC_000913	4425688	A
SNP	204	459	NC_000913	4425696	A
SNP	205	460	NC_000913	4499661	C
SNP	206	461	NC_000913	4510238	G
SUB	207	462,463	NC_000913	4518627	2	AC
SNP	208	464	NC_000913	4532409	G
SNP	209	465	NC_000913	4546601	T
SNP	210	466	NC_000913	4636925	C
SNP	211	467	NC_000913	4638240	A
RA	212	.	NC_000913	58065	0	C	A	bias_e_value=0.0459616	bias_p_value=9.90199e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.3	fisher_strand_p_value=4.39189e-10	frequency=3.039e-01	ks_quality_p_value=1	major_base=C	major_cov=28/43	major_frequency=6.961e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.039e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=28/43	total_cov=59/43
RA	213	.	NC_000913	67225	0	G	T	bias_e_value=111.748	bias_p_value=2.40751e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.4	fisher_strand_p_value=1.68426e-06	frequency=2.258e-01	ks_quality_p_value=1	major_base=G	major_cov=39/33	major_frequency=7.742e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.258e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=39/33	total_cov=39/54
RA	214	.	NC_000913	109960	0	G	A	consensus_score=353.3	frequency=1	major_base=A	major_cov=55/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/49
RA	215	.	NC_000913	113438	0	C	T	bias_e_value=3839560	bias_p_value=0.827198	consensus_score=355.6	fisher_strand_p_value=0.477064	frequency=1	ks_quality_p_value=0.99171	major_base=T	major_cov=51/57	major_frequency=9.908e-01	minor_base=C	minor_cov=1/0	new_cov=51/57	polymorphism_frequency=9.908e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/0	total_cov=52/57
RA	216	.	NC_000913	141849	0	C	A	bias_e_value=0.0252586	bias_p_value=5.44173e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.6	fisher_strand_p_value=2.3484e-10	frequency=2.768e-01	ks_quality_p_value=1	major_base=C	major_cov=32/49	major_frequency=7.232e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.768e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=32/49	total_cov=63/50
RA	217	.	NC_000913	246747	0	G	T	consensus_score=412.6	frequency=1	major_base=T	major_cov=64/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/56
RA	218	.	NC_000913	313543	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=371.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=60/48	major_frequency=9.908e-01	minor_base=G	minor_cov=1/0	new_cov=60/48	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=61/48
RA	219	.	NC_000913	314594	0	G	T	bias_e_value=0.0661179	bias_p_value=1.42445e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.5	fisher_strand_p_value=6.42643e-10	frequency=2.897e-01	ks_quality_p_value=1	major_base=G	major_cov=45/31	major_frequency=7.103e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.897e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=45/31	total_cov=45/62
RA	220	.	NC_000913	334188	0	G	A	bias_e_value=2787040	bias_p_value=0.60044	consensus_score=334.6	fisher_strand_p_value=0.252801	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=55/46	major_frequency=9.712e-01	minor_base=C	minor_cov=3/0	new_cov=55/46	polymorphism_frequency=9.712e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/46
RA	221	.	NC_000913	339935	0	C	T	bias_e_value=4636350	bias_p_value=0.998857	consensus_score=101.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.952578	major_base=T	major_cov=21/17	major_frequency=9.744e-01	minor_base=C	minor_cov=1/0	new_cov=21/17	polymorphism_frequency=9.744e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=22/17
RA	222	.	NC_000913	339941	0	C	T	bias_e_value=3703310	bias_p_value=0.797844	consensus_score=101.3	fisher_strand_p_value=0.435897	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/16	major_frequency=9.744e-01	minor_base=G	minor_cov=0/1	new_cov=22/16	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/17
RA	223	.	NC_000913	339958	0	G	A	consensus_score=107.2	frequency=1	major_base=A	major_cov=20/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/21
RA	224	.	NC_000913	339979	0	G	A	bias_e_value=2802890	bias_p_value=0.603857	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.2	fisher_strand_p_value=0.255294	frequency=7.500e-01	ks_quality_p_value=1	major_base=A	major_cov=11/16	major_frequency=7.500e-01	minor_base=G	minor_cov=6/3	new_cov=11/16	polymorphism_frequency=7.500e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=6/3	total_cov=18/19
RA	225	.	NC_000913	339986	0	G	A	bias_e_value=1888140	bias_p_value=0.406782	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.3	fisher_strand_p_value=0.135724	frequency=7.568e-01	ks_quality_p_value=1	major_base=A	major_cov=10/18	major_frequency=7.568e-01	minor_base=G	minor_cov=6/3	new_cov=10/18	polymorphism_frequency=7.568e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=6/3	total_cov=16/21
RA	226	.	NC_000913	339992	0	C	.	bias_e_value=2724400	bias_p_value=0.586945	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.4	fisher_strand_p_value=0.243124	frequency=2.105e-01	ks_quality_p_value=1	major_base=C	major_cov=11/19	major_frequency=7.895e-01	minor_base=.	minor_cov=5/3	new_cov=5/3	polymorphism_frequency=2.105e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=11/19	total_cov=16/22
RA	227	.	NC_000913	466169	0	T	A	consensus_score=391.3	frequency=1	major_base=A	major_cov=56/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/54
RA	228	.	NC_000913	480295	0	G	A	consensus_score=403.6	frequency=1	major_base=A	major_cov=52/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	229	.	NC_000913	480296	0	G	A	consensus_score=397.4	frequency=1	major_base=A	major_cov=52/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	230	.	NC_000913	631618	0	T	.	consensus_score=326.6	frequency=1	major_base=.	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	231	.	NC_000913	690948	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=296.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/43	major_frequency=9.884e-01	minor_base=C	minor_cov=1/0	new_cov=42/43	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	232	.	NC_000913	700038	0	G	A	consensus_score=287.4	frequency=1	major_base=A	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	233	.	NC_000913	847955	0	G	A	bias_e_value=1.11495e-05	bias_p_value=2.40205e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.8	fisher_strand_p_value=7.70012e-14	frequency=2.721e-01	ks_quality_p_value=1	major_base=G	major_cov=67/40	major_frequency=7.279e-01	minor_base=A	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=2.721e-01	polymorphism_score=47.5	prediction=polymorphism	ref_cov=67/40	total_cov=67/80
RA	234	.	NC_000913	848028	0	G	T	bias_e_value=0.000363694	bias_p_value=7.83543e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.3	fisher_strand_p_value=2.84025e-12	frequency=2.595e-01	ks_quality_p_value=1	major_base=G	major_cov=62/35	major_frequency=7.405e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.595e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=62/35	total_cov=62/69
RA	235	.	NC_000913	968837	0	G	A	consensus_score=245.1	frequency=1	major_base=A	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	236	.	NC_000913	1040126	0	G	T	consensus_score=288.3	frequency=1	major_base=T	major_cov=36/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/46
RA	237	.	NC_000913	1061935	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=238.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/31	major_frequency=9.867e-01	minor_base=C	minor_cov=1/0	new_cov=43/31	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/31
RA	238	.	NC_000913	1097118	0	C	A	bias_e_value=3104630	bias_p_value=0.668864	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.1	fisher_strand_p_value=0.306429	frequency=2.128e-01	ks_quality_p_value=1	major_base=C	major_cov=15/22	major_frequency=7.872e-01	minor_base=A	minor_cov=6/4	new_cov=6/4	polymorphism_frequency=2.128e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=15/22	total_cov=21/26
RA	239	.	NC_000913	1111727	0	C	T	consensus_score=330.4	frequency=1	major_base=T	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	240	.	NC_000913	1111728	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=322.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/44	major_frequency=9.892e-01	minor_base=C	minor_cov=1/0	new_cov=48/44	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/44
RA	241	.	NC_000913	1169836	0	A	G	consensus_score=347.0	frequency=1	major_base=G	major_cov=37/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/56
RA	242	.	NC_000913	1189980	0	A	G	consensus_score=313.9	frequency=1	major_base=G	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	243	.	NC_000913	1196220	0	C	T	consensus_score=219.1	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	244	.	NC_000913	1196232	0	C	T	consensus_score=210.8	frequency=1	major_base=T	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	245	.	NC_000913	1196245	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=172.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/26	major_frequency=9.825e-01	minor_base=A	minor_cov=1/0	new_cov=30/26	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/26
RA	246	.	NC_000913	1196247	0	A	G	consensus_score=171.9	frequency=1	major_base=G	major_cov=31/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/26
RA	247	.	NC_000913	1196277	0	C	T	consensus_score=118.2	frequency=1	major_base=T	major_cov=23/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/20
RA	248	.	NC_000913	1196280	0	G	C	consensus_score=108.4	frequency=1	major_base=C	major_cov=23/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/20
RA	249	.	NC_000913	1196283	0	A	G	consensus_score=114.6	frequency=1	major_base=G	major_cov=23/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/20
RA	250	.	NC_000913	1196292	0	C	T	consensus_score=110.5	frequency=1	major_base=T	major_cov=23/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/19
RA	251	.	NC_000913	1196304	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=70.2	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/16	major_frequency=9.688e-01	minor_base=C	minor_cov=1/0	new_cov=15/16	polymorphism_frequency=9.688e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	252	.	NC_000913	1196316	0	T	A	consensus_score=63.4	deleted=1	frequency=1	major_base=A	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	253	.	NC_000913	1196325	0	A	G	consensus_score=53.4	deleted=1	frequency=1	major_base=G	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	254	.	NC_000913	1196352	0	C	A	consensus_score=41.7	deleted=1	frequency=1	major_base=A	major_cov=13/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/8
RA	255	.	NC_000913	1259977	0	C	T	bias_e_value=3641520	bias_p_value=0.784531	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.2	fisher_strand_p_value=0.483832	frequency=7.045e-01	ks_quality_p_value=0.8685	major_base=T	major_cov=32/30	major_frequency=7.045e-01	minor_base=C	minor_cov=16/10	new_cov=32/30	polymorphism_frequency=7.045e-01	polymorphism_score=67.4	prediction=polymorphism	ref_cov=16/10	total_cov=48/42
RA	256	.	NC_000913	1286870	0	C	A	bias_e_value=2088740	bias_p_value=0.45	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.4	fisher_strand_p_value=0.158252	frequency=2.133e-01	ks_quality_p_value=1	major_base=C	major_cov=27/32	major_frequency=7.867e-01	minor_base=A	minor_cov=11/5	new_cov=11/5	polymorphism_frequency=2.133e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=27/32	total_cov=38/39
RA	257	.	NC_000913	1290644	0	G	T	bias_e_value=3928210	bias_p_value=0.846296	consensus_score=284.5	fisher_strand_p_value=0.499599	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/46	major_frequency=9.770e-01	minor_base=G	minor_cov=0/2	new_cov=39/46	polymorphism_frequency=9.770e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=39/48
RA	258	.	NC_000913	1301992	0	A	T	consensus_score=338.9	frequency=1	major_base=T	major_cov=40/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/63
RA	259	.	NC_000913	1306736	0	T	G	consensus_score=360.3	frequency=1	major_base=G	major_cov=63/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/33
RA	260	.	NC_000913	1310770	0	A	G	consensus_score=422.6	frequency=1	major_base=G	major_cov=74/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/36
RA	261	.	NC_000913	1334966	0	A	C	bias_e_value=0.295538	bias_p_value=6.36709e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.2	fisher_strand_p_value=3.09164e-09	frequency=2.129e-01	ks_quality_p_value=1	major_base=A	major_cov=60/62	major_frequency=7.871e-01	minor_base=C	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.129e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=60/62	total_cov=93/62
RA	262	.	NC_000913	1337394	0	A	G	bias_e_value=3495180	bias_p_value=0.753004	consensus_score=303.2	fisher_strand_p_value=0.385542	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=51/31	major_frequency=9.880e-01	minor_base=T	minor_cov=0/1	new_cov=51/31	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/32
RA	263	.	NC_000913	1351463	0	C	A	bias_e_value=0.768711	bias_p_value=1.65612e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.6	fisher_strand_p_value=8.4545e-09	frequency=3.263e-01	ks_quality_p_value=1	major_base=C	major_cov=28/36	major_frequency=6.737e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.263e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=28/36	total_cov=59/36
RA	264	.	NC_000913	1357202	0	C	T	bias_e_value=3758660	bias_p_value=0.809767	consensus_score=325.9	fisher_strand_p_value=0.450549	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/40	major_frequency=9.890e-01	minor_base=G	minor_cov=0/1	new_cov=50/40	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	265	.	NC_000913	1358859	0	T	C	bias_e_value=3879680	bias_p_value=0.835839	consensus_score=364.1	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=51/47	major_frequency=9.899e-01	minor_base=T	minor_cov=0/1	new_cov=51/47	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/48
RA	266	.	NC_000913	1381704	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=405.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/68	major_frequency=9.909e-01	minor_base=A	minor_cov=0/1	new_cov=41/68	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=41/69
RA	267	.	NC_000913	1383033	0	A	T	consensus_score=269.7	frequency=1	major_base=T	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	268	.	NC_000913	1449061	0	T	G	consensus_score=377.1	frequency=1	major_base=G	major_cov=44/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/56
RA	269	.	NC_000913	1484291	0	C	T	bias_e_value=3877810	bias_p_value=0.835438	consensus_score=133.8	fisher_strand_p_value=0.484896	frequency=1	ks_quality_p_value=0.998759	major_base=T	major_cov=22/24	major_frequency=8.214e-01	minor_base=C	minor_cov=3/7	new_cov=22/24	polymorphism_frequency=8.214e-01	polymorphism_score=21.4	prediction=consensus	ref_cov=3/7	total_cov=25/31
RA	270	.	NC_000913	1502770	0	T	C	bias_e_value=0.579632	bias_p_value=1.24876e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.5	fisher_strand_p_value=6.27961e-09	frequency=2.407e-01	ks_quality_p_value=1	major_base=T	major_cov=49/33	major_frequency=7.593e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.407e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=49/33	total_cov=49/59
RA	271	.	NC_000913	1502772	0	G	A	bias_e_value=0.000336687	bias_p_value=7.2536e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.0	fisher_strand_p_value=2.62173e-12	frequency=3.208e-01	ks_quality_p_value=1	major_base=G	major_cov=48/24	major_frequency=6.792e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.208e-01	polymorphism_score=35.2	prediction=polymorphism	ref_cov=48/24	total_cov=48/59
RA	272	.	NC_000913	1557428	0	G	T	bias_e_value=8.36455	bias_p_value=1.80206e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.3	fisher_strand_p_value=1.05609e-07	frequency=3.030e-01	ks_quality_p_value=1	major_base=G	major_cov=35/34	major_frequency=6.970e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.030e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=35/34	total_cov=35/64
RA	273	.	NC_000913	1580217	0	C	A	bias_e_value=0.000133331	bias_p_value=2.87248e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.2	fisher_strand_p_value=1.00339e-12	frequency=2.397e-01	ks_quality_p_value=1	major_base=C	major_cov=27/65	major_frequency=7.603e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.397e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=27/65	total_cov=57/65
RA	274	.	NC_000913	1611507	0	G	T	bias_e_value=173.78	bias_p_value=3.74392e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.9	fisher_strand_p_value=2.70929e-06	frequency=3.465e-01	ks_quality_p_value=1	major_base=G	major_cov=30/36	major_frequency=6.535e-01	minor_base=T	minor_cov=1/34	new_cov=1/34	polymorphism_frequency=3.465e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=30/36	total_cov=31/70
RA	275	.	NC_000913	1631903	0	G	T	bias_e_value=0.311055	bias_p_value=6.70138e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.8	fisher_strand_p_value=3.26247e-09	frequency=3.148e-01	ks_quality_p_value=1	major_base=G	major_cov=44/30	major_frequency=6.852e-01	minor_base=T	minor_cov=1/33	new_cov=1/33	polymorphism_frequency=3.148e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=44/30	total_cov=45/63
RA	276	.	NC_000913	1637686	0	C	T	bias_e_value=0.242569	bias_p_value=5.22591e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.1	fisher_strand_p_value=2.5122e-09	frequency=2.329e-01	ks_quality_p_value=1	major_base=C	major_cov=55/57	major_frequency=7.671e-01	minor_base=T	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.329e-01	polymorphism_score=27.6	prediction=polymorphism	ref_cov=55/57	total_cov=95/57
RA	277	.	NC_000913	1643679	0	A	T	consensus_score=292.7	frequency=1	major_base=T	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	278	.	NC_000913	1652331	0	T	C	consensus_score=489.0	frequency=1	major_base=C	major_cov=73/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/55
RA	279	.	NC_000913	1703430	0	C	T	consensus_score=295.1	frequency=1	major_base=T	major_cov=31/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/54
RA	280	.	NC_000913	1721136	0	C	T	consensus_score=428.5	frequency=1	major_base=T	major_cov=45/85	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/85	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/85
RA	281	.	NC_000913	1776715	0	A	T	consensus_score=374.0	frequency=1	major_base=T	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	282	.	NC_000913	1792032	0	C	A	bias_e_value=0.00166091	bias_p_value=3.57828e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=351.2	fisher_strand_p_value=1.37576e-11	frequency=2.029e-01	ks_quality_p_value=1	major_base=C	major_cov=37/73	major_frequency=7.971e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.029e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=37/73	total_cov=65/73
RA	283	.	NC_000913	1856968	0	T	A	consensus_score=406.6	frequency=1	major_base=A	major_cov=55/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/64
RA	284	.	NC_000913	1894839	0	T	C	consensus_score=385.4	frequency=1	major_base=C	major_cov=60/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/42
RA	285	.	NC_000913	1922815	0	C	A	bias_e_value=97.6776	bias_p_value=2.10437e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.6	fisher_strand_p_value=1.45744e-06	frequency=2.661e-01	ks_quality_p_value=1	major_base=C	major_cov=30/61	major_frequency=7.339e-01	minor_base=A	minor_cov=27/6	new_cov=27/6	polymorphism_frequency=2.661e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=30/61	total_cov=57/67
RA	286	.	NC_000913	1987499	0	C	A	consensus_score=310.4	frequency=1	major_base=A	major_cov=55/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/39
RA	287	.	NC_000913	2040433	0	C	A	consensus_score=357.8	frequency=1	major_base=A	major_cov=50/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/52
RA	288	.	NC_000913	2073613	0	G	T	bias_e_value=45.5381	bias_p_value=9.81076e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.0	fisher_strand_p_value=6.4303e-07	frequency=2.696e-01	ks_quality_p_value=1	major_base=G	major_cov=43/41	major_frequency=7.304e-01	minor_base=T	minor_cov=1/30	new_cov=1/30	polymorphism_frequency=2.696e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=43/41	total_cov=44/71
RA	289	.	NC_000913	2096437	0	A	.	consensus_score=441.8	frequency=1	major_base=.	major_cov=58/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/33
RA	290	.	NC_000913	2099484	0	G	T	bias_e_value=0.00582371	bias_p_value=1.25466e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.5	fisher_strand_p_value=5.07892e-11	frequency=2.578e-01	ks_quality_p_value=1	major_base=G	major_cov=57/38	major_frequency=7.422e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.578e-01	polymorphism_score=19.3	prediction=polymorphism	ref_cov=57/38	total_cov=57/71
RA	291	.	NC_000913	2171384	0	A	C	bias_e_value=2410290	bias_p_value=0.519275	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.8	fisher_strand_p_value=0.198381	frequency=5.238e-01	ks_quality_p_value=1	major_base=C	major_cov=4/7	major_frequency=5.238e-01	minor_base=A	minor_cov=7/3	new_cov=4/7	polymorphism_frequency=5.238e-01	polymorphism_score=24.8	prediction=polymorphism	ref_cov=7/3	total_cov=11/10
RA	292	.	NC_000913	2173363	0	C	.	consensus_score=75.9	frequency=1	major_base=.	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	293	.	NC_000913	2173364	0	C	.	consensus_score=75.9	frequency=1	major_base=.	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	294	.	NC_000913	2188087	0	T	C	consensus_score=564.3	frequency=1	major_base=C	major_cov=84/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=84/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=84/68
RA	295	.	NC_000913	2239760	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=367.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998321	major_base=T	major_cov=58/45	major_frequency=9.904e-01	minor_base=C	minor_cov=1/0	new_cov=58/45	polymorphism_frequency=9.904e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/0	total_cov=59/45
RA	296	.	NC_000913	2288418	0	G	T	bias_e_value=0.000195529	bias_p_value=4.21248e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.6	fisher_strand_p_value=1.49216e-12	frequency=2.672e-01	ks_quality_p_value=1	major_base=G	major_cov=61/35	major_frequency=7.328e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.672e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=61/35	total_cov=61/70
RA	297	.	NC_000913	2384808	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=391.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=61/56	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=61/56	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=63/56
RA	298	.	NC_000913	2410419	0	G	A	bias_e_value=3853940	bias_p_value=0.830296	consensus_score=323.1	fisher_strand_p_value=0.477273	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/41	major_frequency=9.886e-01	minor_base=G	minor_cov=0/1	new_cov=46/41	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=46/42
RA	299	.	NC_000913	2466633	0	C	A	bias_e_value=0.720967	bias_p_value=1.55326e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.7	fisher_strand_p_value=7.90214e-09	frequency=2.430e-01	ks_quality_p_value=1	major_base=C	major_cov=33/48	major_frequency=7.570e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.430e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=33/48	total_cov=59/48
RA	300	.	NC_000913	2477265	0	A	C	bias_e_value=0.00723675	bias_p_value=1.55909e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.9	fisher_strand_p_value=6.36964e-11	frequency=2.208e-01	ks_quality_p_value=1	major_base=A	major_cov=9/51	major_frequency=7.792e-01	minor_base=C	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.208e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=9/51	total_cov=26/51
RA	301	.	NC_000913	2484827	0	C	T	consensus_score=513.7	frequency=1	major_base=T	major_cov=76/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/74
RA	302	.	NC_000913	2662442	0	T	A	bias_e_value=399530	bias_p_value=0.0860749	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.2	fisher_strand_p_value=0.0173186	frequency=3.095e-01	ks_quality_p_value=0.97888	major_base=T	major_cov=12/17	major_frequency=6.905e-01	minor_base=A	minor_cov=11/2	new_cov=11/2	polymorphism_frequency=3.095e-01	polymorphism_score=43.0	prediction=polymorphism	ref_cov=12/17	total_cov=23/19
RA	303	.	NC_000913	2722838	0	G	T	bias_e_value=0.00356579	bias_p_value=7.68216e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.7	fisher_strand_p_value=3.04674e-11	frequency=2.963e-01	ks_quality_p_value=1	major_base=G	major_cov=49/27	major_frequency=7.037e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.963e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=49/27	total_cov=49/59
RA	304	.	NC_000913	2724821	0	C	.	bias_e_value=3352880	bias_p_value=0.722346	consensus_reject=FREQUENCY_CUTOFF	consensus_score=304.7	fisher_strand_p_value=0.365544	frequency=7.219e-01	ks_quality_p_value=0.970348	major_base=.	major_cov=58/51	major_frequency=7.219e-01	minor_base=C	minor_cov=26/16	new_cov=58/51	polymorphism_frequency=7.219e-01	polymorphism_score=181.2	prediction=polymorphism	ref_cov=26/16	total_cov=85/67
RA	305	.	NC_000913	2767445	0	C	A	bias_e_value=2.75503e-11	bias_p_value=5.93546e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.0	fisher_strand_p_value=1.33501e-19	frequency=2.708e-01	ks_quality_p_value=1	major_base=C	major_cov=4/66	major_frequency=7.292e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.708e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=4/66	total_cov=30/66
RA	306	.	NC_000913	2771139	0	G	T	bias_e_value=148.685	bias_p_value=3.20327e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.4	fisher_strand_p_value=2.2902e-06	frequency=2.258e-01	ks_quality_p_value=1	major_base=G	major_cov=41/55	major_frequency=7.742e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.258e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=41/55	total_cov=41/83
RA	307	.	NC_000913	2817991	0	A	C	bias_e_value=242647	bias_p_value=0.052276	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.0	fisher_strand_p_value=0.00918749	frequency=2.000e-01	ks_quality_p_value=1	major_base=A	major_cov=20/44	major_frequency=8.000e-01	minor_base=C	minor_cov=11/5	new_cov=11/5	polymorphism_frequency=2.000e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=20/44	total_cov=31/49
RA	308	.	NC_000913	2818324	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.9	fisher_strand_p_value=1	frequency=2.037e-01	ks_quality_p_value=1	major_base=G	major_cov=18/25	major_frequency=7.963e-01	minor_base=A	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=2.037e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=18/25	total_cov=22/32
RA	309	.	NC_000913	3024914	0	C	A	bias_e_value=0.00590634	bias_p_value=1.27247e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=299.9	fisher_strand_p_value=5.15405e-11	frequency=2.045e-01	ks_quality_p_value=1	major_base=C	major_cov=36/69	major_frequency=7.955e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.045e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=36/69	total_cov=63/69
RA	310	.	NC_000913	3032307	0	C	T	bias_e_value=0.00477376	bias_p_value=1.02846e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.5	fisher_strand_p_value=4.12863e-11	frequency=2.772e-01	ks_quality_p_value=1	major_base=C	major_cov=23/50	major_frequency=7.228e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.772e-01	polymorphism_score=30.6	prediction=polymorphism	ref_cov=23/50	total_cov=51/50
RA	311	.	NC_000913	3054886	0	G	T	bias_e_value=0.000492362	bias_p_value=1.06075e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.3	fisher_strand_p_value=3.8894e-12	frequency=3.426e-01	ks_quality_p_value=1	major_base=G	major_cov=22/49	major_frequency=6.574e-01	minor_base=T	minor_cov=36/1	new_cov=36/1	polymorphism_frequency=3.426e-01	polymorphism_score=32.1	prediction=polymorphism	ref_cov=22/49	total_cov=58/50
RA	312	.	NC_000913	3054894	0	G	T	bias_e_value=0.00758323	bias_p_value=1.63373e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.4	fisher_strand_p_value=6.68792e-11	frequency=3.200e-01	ks_quality_p_value=1	major_base=G	major_cov=21/47	major_frequency=6.800e-01	minor_base=T	minor_cov=31/1	new_cov=31/1	polymorphism_frequency=3.200e-01	polymorphism_score=23.8	prediction=polymorphism	ref_cov=21/47	total_cov=52/48
RA	313	.	NC_000913	3055991	0	G	T	bias_e_value=0.0191186	bias_p_value=4.11892e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.8	fisher_strand_p_value=1.75549e-10	frequency=2.652e-01	ks_quality_p_value=1	major_base=G	major_cov=54/43	major_frequency=7.348e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.652e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=54/43	total_cov=54/78
RA	314	.	NC_000913	3088010	0	C	T	consensus_score=420.5	frequency=1	major_base=T	major_cov=50/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/79
RA	315	.	NC_000913	3088011	0	C	T	consensus_score=431.3	frequency=1	major_base=T	major_cov=50/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/78
RA	316	.	NC_000913	3101039	1	.	C	bias_e_value=3764020	bias_p_value=0.810923	consensus_score=365.3	fisher_strand_p_value=0.505592	frequency=1	ks_quality_p_value=0.894008	major_base=C	major_cov=42/55	major_frequency=9.151e-01	minor_base=.	minor_cov=5/4	new_cov=42/55	polymorphism_frequency=9.151e-01	polymorphism_score=24.5	prediction=consensus	ref_cov=5/4	total_cov=47/59
RA	317	.	NC_000913	3191376	0	G	T	bias_e_value=0.0138839	bias_p_value=2.99116e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.1	fisher_strand_p_value=1.25694e-10	frequency=2.662e-01	ks_quality_p_value=1	major_base=G	major_cov=57/56	major_frequency=7.338e-01	minor_base=T	minor_cov=0/41	new_cov=0/41	polymorphism_frequency=2.662e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=57/56	total_cov=57/97
RA	318	.	NC_000913	3226224	0	G	T	bias_e_value=4.33113	bias_p_value=9.331e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.1	fisher_strand_p_value=5.25341e-08	frequency=2.358e-01	ks_quality_p_value=1	major_base=G	major_cov=46/35	major_frequency=7.642e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.358e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=46/35	total_cov=46/60
RA	319	.	NC_000913	3263231	0	T	A	consensus_score=322.4	frequency=1	major_base=A	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	320	.	NC_000913	3269747	0	C	.	bias_e_value=3108000	bias_p_value=0.66959	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.5	fisher_strand_p_value=0.324411	frequency=7.677e-01	ks_quality_p_value=0.946463	major_base=.	major_cov=46/30	major_frequency=7.677e-01	minor_base=C	minor_cov=17/6	new_cov=46/30	polymorphism_frequency=7.677e-01	polymorphism_score=96.2	prediction=polymorphism	ref_cov=17/6	total_cov=63/36
RA	321	.	NC_000913	3308048	0	G	A	consensus_score=295.9	frequency=1	major_base=A	major_cov=36/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/47
RA	322	.	NC_000913	3316428	0	C	T	consensus_score=259.3	frequency=1	major_base=T	major_cov=26/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/51
RA	323	.	NC_000913	3319766	0	C	A	bias_e_value=17.4374	bias_p_value=3.75673e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.3	fisher_strand_p_value=2.30729e-07	frequency=4.000e-01	ks_quality_p_value=1	major_base=C	major_cov=35/25	major_frequency=6.000e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=4.000e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=35/25	total_cov=75/25
RA	324	.	NC_000913	3336411	0	G	A	bias_e_value=4640720	bias_p_value=0.999799	consensus_score=350.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.980001	major_base=A	major_cov=46/53	major_frequency=9.900e-01	minor_base=.	minor_cov=0/1	new_cov=46/53	polymorphism_frequency=9.900e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=46/54
RA	325	.	NC_000913	3336412	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=337.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/52	major_frequency=9.899e-01	minor_base=G	minor_cov=0/1	new_cov=46/52	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=46/54
RA	326	.	NC_000913	3388041	0	T	G	consensus_score=330.0	frequency=1	major_base=G	major_cov=52/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/35
RA	327	.	NC_000913	3400539	0	G	A	bias_e_value=22737.3	bias_p_value=0.00489854	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.8	fisher_strand_p_value=0.000579477	frequency=2.083e-01	ks_quality_p_value=1	major_base=G	major_cov=26/31	major_frequency=7.917e-01	minor_base=A	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.083e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=26/31	total_cov=26/46
RA	328	.	NC_000913	3433680	0	C	A	bias_e_value=0.00592226	bias_p_value=1.27589e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.6	fisher_strand_p_value=5.16852e-11	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=30/50	major_frequency=7.143e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.857e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=30/50	total_cov=62/50
RA	329	.	NC_000913	3436697	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=275.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/35	major_frequency=9.875e-01	minor_base=C	minor_cov=1/0	new_cov=44/35	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	330	.	NC_000913	3474425	0	T	G	consensus_score=272.8	frequency=1	major_base=G	major_cov=45/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/33
RA	331	.	NC_000913	3475993	0	T	C	bias_e_value=3519050	bias_p_value=0.758146	consensus_score=507.0	fisher_strand_p_value=0.390977	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=51/81	major_frequency=9.925e-01	minor_base=A	minor_cov=1/0	new_cov=51/81	polymorphism_frequency=9.925e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/81
RA	332	.	NC_000913	3560455	1	.	G	bias_e_value=3917010	bias_p_value=0.843882	consensus_score=414.6	fisher_strand_p_value=0.496139	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=54/56	major_frequency=9.821e-01	minor_base=A	minor_cov=0/2	new_cov=54/56	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/58
RA	333	.	NC_000913	3566550	0	G	A	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=347.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998183	major_base=A	major_cov=57/42	major_frequency=9.900e-01	minor_base=C	minor_cov=1/0	new_cov=57/42	polymorphism_frequency=9.900e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=58/42
RA	334	.	NC_000913	3629921	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=283.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/45	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=40/45	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/46
RA	335	.	NC_000913	3669715	0	G	T	bias_e_value=0.0101412	bias_p_value=2.18482e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.0	fisher_strand_p_value=9.05625e-11	frequency=2.756e-01	ks_quality_p_value=1	major_base=G	major_cov=53/39	major_frequency=7.244e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.756e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=53/39	total_cov=53/74
RA	336	.	NC_000913	3682515	0	C	T	consensus_score=333.6	frequency=1	major_base=T	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	337	.	NC_000913	3707947	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=489.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=105/40	major_frequency=9.932e-01	minor_base=C	minor_cov=1/0	new_cov=105/40	polymorphism_frequency=9.932e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=106/40
RA	338	.	NC_000913	3725176	0	T	G	consensus_score=348.5	frequency=1	major_base=G	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	339	.	NC_000913	3761230	0	G	A	consensus_score=267.4	frequency=1	major_base=A	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	340	.	NC_000913	3771979	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=456.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=62/72	major_frequency=9.926e-01	minor_base=G	minor_cov=0/1	new_cov=62/72	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=62/73
RA	341	.	NC_000913	3815883	1	.	C	bias_e_value=4641630	bias_p_value=0.999996	consensus_score=417.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997029	major_base=C	major_cov=43/66	major_frequency=9.820e-01	minor_base=.	minor_cov=1/1	new_cov=43/66	polymorphism_frequency=9.820e-01	polymorphism_score=0.0	prediction=consensus	ref_cov=1/1	total_cov=45/67
RA	342	.	NC_000913	3823162	0	C	T	consensus_score=282.0	frequency=1	major_base=T	major_cov=31/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/57
RA	343	.	NC_000913	3869637	0	C	A	consensus_score=312.0	frequency=1	major_base=A	major_cov=36/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/52
RA	344	.	NC_000913	3875298	0	C	T	bias_e_value=3648900	bias_p_value=0.786121	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.4	fisher_strand_p_value=0.422047	frequency=6.296e-01	ks_quality_p_value=1	major_base=T	major_cov=43/25	major_frequency=6.296e-01	minor_base=C	minor_cov=22/18	new_cov=43/25	polymorphism_frequency=6.296e-01	polymorphism_score=103.9	prediction=polymorphism	ref_cov=22/18	total_cov=65/43
RA	345	.	NC_000913	3878536	0	G	A	consensus_score=264.7	frequency=1	major_base=A	major_cov=35/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	346	.	NC_000913	3911533	0	C	A	bias_e_value=0.0103594	bias_p_value=2.23182e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.3	fisher_strand_p_value=9.25962e-11	frequency=3.917e-01	ks_quality_p_value=1	major_base=C	major_cov=36/37	major_frequency=6.083e-01	minor_base=A	minor_cov=47/0	new_cov=47/0	polymorphism_frequency=3.917e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=36/37	total_cov=83/38
RA	347	.	NC_000913	3912074	0	G	A	consensus_score=307.9	frequency=1	major_base=A	major_cov=46/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	348	.	NC_000913	3926183	0	G	A	consensus_score=419.8	frequency=1	major_base=A	major_cov=51/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/66
RA	349	.	NC_000913	3926210	0	T	C	consensus_score=428.5	frequency=1	major_base=C	major_cov=47/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/67
RA	350	.	NC_000913	3926815	0	C	T	consensus_score=374.5	frequency=1	major_base=T	major_cov=58/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/49
RA	351	.	NC_000913	3927019	0	G	A	consensus_score=516.2	frequency=1	major_base=A	major_cov=77/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/70
RA	352	.	NC_000913	3927070	0	A	T	consensus_score=505.0	frequency=1	major_base=T	major_cov=71/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/73
RA	353	.	NC_000913	3927184	0	T	C	bias_e_value=3509920	bias_p_value=0.75618	consensus_score=445.4	fisher_strand_p_value=0.388889	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=48/77	major_frequency=9.921e-01	minor_base=A	minor_cov=1/0	new_cov=48/77	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/77
RA	354	.	NC_000913	3927217	0	T	C	bias_e_value=4182920	bias_p_value=0.90117	consensus_score=443.4	fisher_strand_p_value=0.589748	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=38/85	major_frequency=9.685e-01	minor_base=A	minor_cov=2/2	new_cov=38/85	polymorphism_frequency=9.685e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=0/0	total_cov=40/87
RA	355	.	NC_000913	3927704	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=300.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=55/26	major_frequency=9.878e-01	minor_base=C	minor_cov=1/0	new_cov=55/26	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/26
RA	356	.	NC_000913	3927736	0	C	T	consensus_score=307.8	frequency=1	major_base=T	major_cov=50/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/33
RA	357	.	NC_000913	3927877	0	G	T	consensus_score=276.2	frequency=1	major_base=T	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	358	.	NC_000913	3927904	0	C	T	consensus_score=278.2	frequency=1	major_base=T	major_cov=28/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/47
RA	359	.	NC_000913	3927919	0	T	C	consensus_score=271.2	frequency=1	major_base=C	major_cov=25/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/48
RA	360	.	NC_000913	3927922	0	A	G	consensus_score=277.2	frequency=1	major_base=G	major_cov=25/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/48
RA	361	.	NC_000913	3927935	0	C	T	consensus_score=265.0	frequency=1	major_base=T	major_cov=25/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/51
RA	362	.	NC_000913	3927946	0	A	G	consensus_score=279.0	frequency=1	major_base=G	major_cov=23/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/51
RA	363	.	NC_000913	3927947	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=253.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/50	major_frequency=9.865e-01	minor_base=G	minor_cov=0/1	new_cov=23/50	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/51
RA	364	.	NC_000913	3927964	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=271.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/49	major_frequency=9.872e-01	minor_base=G	minor_cov=0/1	new_cov=28/49	polymorphism_frequency=9.872e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=28/50
RA	365	.	NC_000913	3927973	0	C	T	consensus_score=266.2	frequency=1	major_base=T	major_cov=29/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/47
RA	366	.	NC_000913	3927977	0	G	C	consensus_score=282.2	frequency=1	major_base=C	major_cov=27/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/48
RA	367	.	NC_000913	3927985	0	G	A	consensus_score=269.4	frequency=1	major_base=A	major_cov=27/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/48
RA	368	.	NC_000913	3928057	0	T	C	consensus_score=294.4	frequency=1	major_base=C	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	369	.	NC_000913	3928102	0	A	T	consensus_score=271.3	frequency=1	major_base=T	major_cov=46/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/30
RA	370	.	NC_000913	3930314	0	C	T	consensus_score=387.7	frequency=1	major_base=T	major_cov=47/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/65
RA	371	.	NC_000913	3930650	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=335.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/44	major_frequency=9.888e-01	minor_base=A	minor_cov=0/1	new_cov=44/44	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/45
RA	372	.	NC_000913	3952642	0	C	T	consensus_score=432.4	frequency=1	major_base=T	major_cov=64/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/58
RA	373	.	NC_000913	3959055	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=313.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=46/41	major_frequency=9.667e-01	minor_base=T	minor_cov=2/1	new_cov=46/41	polymorphism_frequency=9.667e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=2/1	total_cov=48/43
RA	374	.	NC_000913	3959100	0	C	T	consensus_score=296.5	frequency=1	major_base=T	major_cov=34/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/51
RA	375	.	NC_000913	3959115	0	T	C	consensus_score=327.1	frequency=1	major_base=C	major_cov=35/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/52
RA	376	.	NC_000913	3959121	0	G	A	consensus_score=305.2	frequency=1	major_base=A	major_cov=33/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/53
RA	377	.	NC_000913	3959127	0	A	T	consensus_score=301.4	frequency=1	major_base=T	major_cov=32/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/59
RA	378	.	NC_000913	3959130	0	T	C	consensus_score=342.3	frequency=1	major_base=C	major_cov=33/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/59
RA	379	.	NC_000913	3959148	0	G	A	bias_e_value=3437850	bias_p_value=0.740653	consensus_score=318.6	fisher_strand_p_value=0.373626	frequency=1	ks_quality_p_value=0.997805	major_base=A	major_cov=33/57	major_frequency=9.890e-01	minor_base=C	minor_cov=1/0	new_cov=33/57	polymorphism_frequency=9.890e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/1	total_cov=34/58
RA	380	.	NC_000913	3959220	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=316.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/57	major_frequency=9.889e-01	minor_base=T	minor_cov=0/1	new_cov=32/57	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/58
RA	381	.	NC_000913	3959260	0	T	C	consensus_score=353.0	frequency=1	major_base=C	major_cov=40/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/54
RA	382	.	NC_000913	3959538	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=237.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/29	major_frequency=9.857e-01	minor_base=C	minor_cov=1/0	new_cov=40/29	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	383	.	NC_000913	3959544	0	C	A	consensus_score=219.8	frequency=1	major_base=A	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	384	.	NC_000913	3959562	0	A	G	consensus_score=222.8	frequency=1	major_base=G	major_cov=39/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/24
RA	385	.	NC_000913	3959565	0	T	A	consensus_score=207.0	frequency=1	major_base=A	major_cov=39/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/24
RA	386	.	NC_000913	3959577	0	G	A	consensus_score=225.7	frequency=1	major_base=A	major_cov=39/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/27
RA	387	.	NC_000913	3959589	0	G	A	consensus_score=216.5	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	388	.	NC_000913	3959619	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=241.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/35	major_frequency=9.863e-01	minor_base=C	minor_cov=1/0	new_cov=37/35	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/35
RA	389	.	NC_000913	3959730	0	C	A	consensus_score=319.6	frequency=1	major_base=A	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	390	.	NC_000913	3959894	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=394.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/57	major_frequency=9.905e-01	minor_base=T	minor_cov=0/1	new_cov=47/57	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/58
RA	391	.	NC_000913	3959982	0	A	G	consensus_score=424.5	frequency=1	major_base=G	major_cov=63/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/52
RA	392	.	NC_000913	3960002	0	T	G	consensus_score=432.1	frequency=1	major_base=G	major_cov=62/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/54
RA	393	.	NC_000913	3960114	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=345.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/51	major_frequency=9.804e-01	minor_base=C	minor_cov=1/1	new_cov=49/51	polymorphism_frequency=9.804e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/1	total_cov=50/52
RA	394	.	NC_000913	3960209	0	C	T	consensus_score=400.8	frequency=1	major_base=T	major_cov=58/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/59
RA	395	.	NC_000913	3960240	0	T	A	consensus_score=429.9	frequency=1	major_base=A	major_cov=63/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/59
RA	396	.	NC_000913	3960251	1	.	A	bias_e_value=4641600	bias_p_value=0.999988	consensus_score=442.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995134	major_base=A	major_cov=62/59	major_frequency=9.918e-01	minor_base=G	minor_cov=1/0	new_cov=62/59	polymorphism_frequency=9.918e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=63/59
RA	397	.	NC_000913	3960284	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=414.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=67/51	major_frequency=9.833e-01	minor_base=C	minor_cov=1/1	new_cov=67/51	polymorphism_frequency=9.833e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=68/52
RA	398	.	NC_000913	3960483	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=401.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=58/57	major_frequency=9.914e-01	minor_base=G	minor_cov=1/0	new_cov=58/57	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/57
RA	399	.	NC_000913	3960553	0	G	A	consensus_score=363.2	frequency=1	major_base=A	major_cov=43/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/58
RA	400	.	NC_000913	3961108	0	T	C	consensus_score=325.7	frequency=1	major_base=C	major_cov=40/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/50
RA	401	.	NC_000913	3961120	0	A	T	consensus_score=277.1	frequency=1	major_base=T	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	402	.	NC_000913	3961124	0	T	G	consensus_score=297.0	frequency=1	major_base=G	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	403	.	NC_000913	3961126	0	C	G	consensus_score=282.2	frequency=1	major_base=G	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	404	.	NC_000913	3961135	0	A	G	consensus_score=278.5	frequency=1	major_base=G	major_cov=27/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/48
RA	405	.	NC_000913	3961138	1	.	G	bias_e_value=2859630	bias_p_value=0.616081	consensus_score=228.2	fisher_strand_p_value=0.550695	frequency=1	ks_quality_p_value=0.480055	major_base=G	major_cov=25/45	major_frequency=9.589e-01	minor_base=.	minor_cov=2/1	new_cov=25/45	polymorphism_frequency=9.589e-01	polymorphism_score=4.5	prediction=consensus	ref_cov=2/1	total_cov=27/48
RA	406	.	NC_000913	3961141	0	T	.	bias_e_value=1801020	bias_p_value=0.388013	consensus_score=334.6	fisher_strand_p_value=0.129952	frequency=1	ks_quality_p_value=0.973335	major_base=.	major_cov=25/47	major_frequency=9.730e-01	minor_base=G	minor_cov=2/0	new_cov=25/47	polymorphism_frequency=9.730e-01	polymorphism_score=3.4	prediction=consensus	ref_cov=0/1	total_cov=27/48
RA	407	.	NC_000913	3961144	0	G	A	consensus_score=263.4	frequency=1	major_base=A	major_cov=27/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/48
RA	408	.	NC_000913	3961146	0	T	A	consensus_score=264.5	frequency=1	major_base=A	major_cov=27/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/48
RA	409	.	NC_000913	3961147	0	T	G	consensus_score=271.7	frequency=1	major_base=G	major_cov=27/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/48
RA	410	.	NC_000913	3961159	0	C	T	consensus_score=294.6	frequency=1	major_base=T	major_cov=29/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/53
RA	411	.	NC_000913	3961280	0	A	G	consensus_score=272.2	frequency=1	major_base=G	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	412	.	NC_000913	3961306	0	T	C	bias_e_value=3593430	bias_p_value=0.774171	consensus_score=251.0	fisher_strand_p_value=0.408451	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=28/42	major_frequency=9.859e-01	minor_base=A	minor_cov=1/0	new_cov=28/42	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	413	.	NC_000913	3961351	0	G	A	bias_e_value=4641480	bias_p_value=0.999964	consensus_score=220.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991513	major_base=A	major_cov=33/31	major_frequency=9.697e-01	minor_base=G	minor_cov=1/1	new_cov=33/31	polymorphism_frequency=9.697e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=34/32
RA	414	.	NC_000913	3961587	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=305.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/28	major_frequency=9.882e-01	minor_base=G	minor_cov=1/0	new_cov=56/28	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/28
RA	415	.	NC_000913	3961980	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=331.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/56	major_frequency=9.900e-01	minor_base=G	minor_cov=0/1	new_cov=43/56	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/57
RA	416	.	NC_000913	3962444	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=267.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/28	major_frequency=9.753e-01	minor_base=G	minor_cov=1/1	new_cov=51/28	polymorphism_frequency=9.753e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/1	total_cov=52/29
RA	417	.	NC_000913	3962449	0	G	A	bias_e_value=4640480	bias_p_value=0.999746	consensus_score=281.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.977566	major_base=A	major_cov=55/29	major_frequency=9.882e-01	minor_base=G	minor_cov=1/0	new_cov=55/29	polymorphism_frequency=9.882e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=56/29
RA	418	.	NC_000913	3963807	0	T	A	consensus_score=252.2	frequency=1	major_base=A	major_cov=43/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
RA	419	.	NC_000913	3963843	0	A	G	consensus_score=264.4	frequency=1	major_base=G	major_cov=48/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/23
RA	420	.	NC_000913	3963849	0	G	T	consensus_score=274.7	frequency=1	major_base=T	major_cov=50/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/24
RA	421	.	NC_000913	3963921	0	A	G	consensus_score=337.9	frequency=1	major_base=G	major_cov=59/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/31
RA	422	.	NC_000913	3963966	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=306.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=59/35	major_frequency=9.895e-01	minor_base=C	minor_cov=1/0	new_cov=59/35	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/35
RA	423	.	NC_000913	3963972	0	C	T	consensus_score=358.5	frequency=1	major_base=T	major_cov=63/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/36
RA	424	.	NC_000913	3964008	0	A	G	consensus_score=377.3	frequency=1	major_base=G	major_cov=61/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/39
RA	425	.	NC_000913	3964040	0	A	G	consensus_score=387.9	frequency=1	major_base=G	major_cov=65/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/38
RA	426	.	NC_000913	3964071	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=349.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=65/38	major_frequency=9.904e-01	minor_base=C	minor_cov=1/0	new_cov=65/38	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/38
RA	427	.	NC_000913	3964074	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=383.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=66/38	major_frequency=9.905e-01	minor_base=A	minor_cov=1/0	new_cov=66/38	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/38
RA	428	.	NC_000913	3964361	0	T	.	consensus_score=408.2	frequency=1	major_base=.	major_cov=33/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/52
RA	429	.	NC_000913	3964362	0	T	.	consensus_score=408.2	frequency=1	major_base=.	major_cov=33/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/52
RA	430	.	NC_000913	3964422	0	G	A	consensus_score=293.1	frequency=1	major_base=A	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	431	.	NC_000913	3964425	0	C	T	bias_e_value=3910410	bias_p_value=0.842462	consensus_score=293.5	fisher_strand_p_value=0.494118	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/42	major_frequency=9.765e-01	minor_base=C	minor_cov=2/0	new_cov=41/42	polymorphism_frequency=9.765e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=43/42
RA	432	.	NC_000913	3993531	0	T	C	consensus_score=322.2	frequency=1	major_base=C	major_cov=47/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/39
RA	433	.	NC_000913	3996049	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=211.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=37/27	major_frequency=9.846e-01	minor_base=C	minor_cov=1/0	new_cov=37/27	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	434	.	NC_000913	4011802	0	C	T	consensus_score=289.4	frequency=1	major_base=T	major_cov=29/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/57
RA	435	.	NC_000913	4031457	0	C	T	consensus_score=284.2	frequency=1	major_base=T	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	436	.	NC_000913	4031511	0	C	T	consensus_score=249.5	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	437	.	NC_000913	4084903	0	T	G	bias_e_value=3712170	bias_p_value=0.799752	consensus_score=299.0	fisher_strand_p_value=0.438202	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/50	major_frequency=9.888e-01	minor_base=A	minor_cov=1/0	new_cov=38/50	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	438	.	NC_000913	4092703	0	A	G	consensus_score=338.7	frequency=1	major_base=G	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	439	.	NC_000913	4113851	0	G	A	consensus_score=356.4	frequency=1	major_base=A	major_cov=73/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/29
RA	440	.	NC_000913	4143377	0	C	T	consensus_score=234.4	frequency=1	major_base=T	major_cov=31/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	441	.	NC_000913	4161248	0	G	T	consensus_score=238.7	frequency=1	major_base=T	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	442	.	NC_000913	4164123	0	C	G	bias_e_value=3800510	bias_p_value=0.818784	consensus_score=357.9	fisher_strand_p_value=0.465347	frequency=1	ks_quality_p_value=0.992897	major_base=G	major_cov=54/46	major_frequency=9.901e-01	minor_base=T	minor_cov=0/1	new_cov=54/46	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	443	.	NC_000913	4215347	0	T	A	consensus_score=478.4	frequency=1	major_base=A	major_cov=66/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/64
RA	444	.	NC_000913	4223638	0	T	C	bias_e_value=3649600	bias_p_value=0.786272	consensus_score=317.6	fisher_strand_p_value=0.422222	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=37/52	major_frequency=9.889e-01	minor_base=A	minor_cov=1/0	new_cov=37/52	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/52
RA	445	.	NC_000913	4282332	1	.	A	bias_e_value=4641610	bias_p_value=0.999991	consensus_score=535.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99577	major_base=A	major_cov=77/72	major_frequency=9.803e-01	minor_base=.	minor_cov=2/1	new_cov=77/72	polymorphism_frequency=9.803e-01	polymorphism_score=4.2	prediction=consensus	ref_cov=2/1	total_cov=80/73
RA	446	.	NC_000913	4293781	0	G	A	consensus_score=294.3	frequency=1	major_base=A	major_cov=36/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/50
RA	447	.	NC_000913	4293782	0	C	T	consensus_score=308.0	frequency=1	major_base=T	major_cov=36/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/50
RA	448	.	NC_000913	4296190	0	A	G	bias_e_value=1713290	bias_p_value=0.369112	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.1	fisher_strand_p_value=0.160248	frequency=2.308e-01	ks_quality_p_value=0.733259	major_base=A	major_cov=8/12	major_frequency=7.692e-01	minor_base=G	minor_cov=5/1	new_cov=5/1	polymorphism_frequency=2.308e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=8/12	total_cov=13/13
RA	449	.	NC_000913	4296191	0	A	C	bias_e_value=1100750	bias_p_value=0.237146	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.6	fisher_strand_p_value=0.0730435	frequency=2.692e-01	ks_quality_p_value=0.862377	major_base=A	major_cov=7/12	major_frequency=7.308e-01	minor_base=C	minor_cov=6/1	new_cov=6/1	polymorphism_frequency=2.692e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=7/12	total_cov=13/13
RA	450	.	NC_000913	4296380	1	.	C	bias_e_value=3984060	bias_p_value=0.858328	consensus_score=224.9	fisher_strand_p_value=0.517865	frequency=1	ks_quality_p_value=0.999082	major_base=C	major_cov=39/26	major_frequency=9.701e-01	minor_base=.	minor_cov=2/0	new_cov=39/26	polymorphism_frequency=9.701e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=2/0	total_cov=41/27
RA	451	.	NC_000913	4296380	2	.	G	bias_e_value=3973790	bias_p_value=0.856115	consensus_score=233.5	fisher_strand_p_value=0.514047	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=39/27	major_frequency=9.706e-01	minor_base=.	minor_cov=2/0	new_cov=39/27	polymorphism_frequency=9.706e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=2/0	total_cov=41/27
RA	452	.	NC_000913	4325644	0	C	T	consensus_score=271.3	frequency=1	major_base=T	major_cov=27/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/51
RA	453	.	NC_000913	4366717	0	C	.	consensus_score=549.5	frequency=1	major_base=.	major_cov=49/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/66
RA	454	.	NC_000913	4392997	0	G	A	consensus_score=556.3	frequency=1	major_base=A	major_cov=57/92	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/92	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/92
RA	455	.	NC_000913	4393552	0	G	A	consensus_score=302.5	frequency=1	major_base=A	major_cov=49/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/41
RA	456	.	NC_000913	4396373	0	C	T	consensus_score=251.3	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	457	.	NC_000913	4396772	0	T	C	consensus_score=303.9	frequency=1	major_base=C	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	458	.	NC_000913	4425688	0	C	A	consensus_score=345.0	frequency=1	major_base=A	major_cov=37/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/56
RA	459	.	NC_000913	4425696	0	C	A	consensus_score=332.4	frequency=1	major_base=A	major_cov=33/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/57
RA	460	.	NC_000913	4499661	0	T	C	consensus_score=402.8	frequency=1	major_base=C	major_cov=65/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/51
RA	461	.	NC_000913	4510238	0	T	G	bias_e_value=744975	bias_p_value=0.160498	consensus_score=473.5	fisher_strand_p_value=0.0374603	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=77/58	major_frequency=9.712e-01	minor_base=T	minor_cov=0/4	new_cov=77/58	polymorphism_frequency=9.712e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/4	total_cov=77/62
RA	462	.	NC_000913	4518627	0	C	A	consensus_score=339.0	frequency=1	major_base=A	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	463	.	NC_000913	4518628	0	T	C	consensus_score=360.3	frequency=1	major_base=C	major_cov=47/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/50
RA	464	.	NC_000913	4532409	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=336.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=55/38	major_frequency=9.894e-01	minor_base=A	minor_cov=1/0	new_cov=55/38	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/38
RA	465	.	NC_000913	4546601	0	C	T	consensus_score=495.8	frequency=1	major_base=T	major_cov=72/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/64
RA	466	.	NC_000913	4636925	0	G	C	consensus_score=327.3	frequency=1	major_base=C	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	467	.	NC_000913	4638240	0	G	A	consensus_score=274.7	frequency=1	major_base=A	major_cov=52/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/31
MC	468	.	NC_000913	257908	258683	768	0	left_inside_cov=0	left_outside_cov=129	right_inside_cov=0	right_outside_cov=130
MC	469	.	NC_000913	279326	291231	603	597	left_inside_cov=32	left_outside_cov=34	right_inside_cov=33	right_outside_cov=34
MC	470	.	NC_000913	678921	688859	0	1013	left_inside_cov=0	left_outside_cov=89	right_inside_cov=32	right_outside_cov=34
MC	471	.	NC_000913	1196304	1211450	0	0	left_inside_cov=32	left_outside_cov=38	right_inside_cov=32	right_outside_cov=34
MC	472	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=99	right_inside_cov=0	right_outside_cov=103
MC	473	.	NC_000913	2867280	2867287	0	0	left_inside_cov=0	left_outside_cov=97	right_inside_cov=0	right_outside_cov=97
MC	474	.	NC_000913	3423765	3424492	469	253	left_inside_cov=33	left_outside_cov=34	right_inside_cov=32	right_outside_cov=34
MC	475	.	NC_000913	3708467	3708634	0	0	left_inside_cov=0	left_outside_cov=46	right_inside_cov=13	right_outside_cov=59
MC	476	.	NC_000913	3931455	3938491	0	0	left_inside_cov=0	left_outside_cov=121	right_inside_cov=1	right_outside_cov=124
MC	477	.	NC_000913	3941856	3943210	155	1182	left_inside_cov=33	left_outside_cov=35	right_inside_cov=33	right_outside_cov=34
MC	478	.	NC_000913	3943770	3945384	266	1323	left_inside_cov=33	left_outside_cov=35	right_inside_cov=32	right_outside_cov=37
MC	479	.	NC_000913	3959446	3959500	0	0	left_inside_cov=0	left_outside_cov=71	right_inside_cov=0	right_outside_cov=74
MC	480	.	NC_000913	4640415	4640417	0	0	left_inside_cov=0	left_outside_cov=107	right_inside_cov=0	right_outside_cov=132
JC	481	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=77	coverage_plus=68	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=293	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=294	max_left_minus=294	max_left_plus=275	max_min_left=149	max_min_left_minus=149	max_min_left_plus=147	max_min_right=148	max_min_right_minus=147	max_min_right_plus=148	max_pos_hash_score=586	max_right=297	max_right_minus=297	max_right_plus=285	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.53	new_junction_read_count=149	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=145
JC	482	.	NC_000913	116969	-1	NC_000913	117324	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.327e-02	junction_possible_overlap_registers=284	key=NC_000913__116969__-1__NC_000913__117315__1__9____300__300__0__0	max_left=186	max_left_minus=186	max_left_plus=184	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=72	max_min_right_minus=72	max_min_right_plus=72	max_pos_hash_score=568	max_right=283	max_right_minus=72	max_right_plus=283	neg_log10_pos_hash_p_value=9.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.327e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=9	side_1_possible_overlap_registers=293	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=3
JC	483	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=52	coverage_plus=76	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=287	max_min_left=143	max_min_left_minus=91	max_min_left_plus=143	max_min_right=138	max_min_right_minus=132	max_min_right_plus=138	max_pos_hash_score=570	max_right=283	max_right_minus=283	max_right_plus=280	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.37	new_junction_read_count=130	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=128
JC	484	.	NC_000913	260267	-1	NC_000913	273955	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=4.580e-02	junction_possible_overlap_registers=292	key=NC_000913__260268__-1__NC_000913__273955__1__1____300__300__0__1	max_left=229	max_left_minus=229	max_left_plus=139	max_min_left=139	max_min_left_minus=13	max_min_left_plus=139	max_min_right=67	max_min_right_minus=67	max_min_right_plus=0	max_pos_hash_score=584	max_right=293	max_right_minus=78	max_right_plus=293	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=4.580e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=125	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	485	.	NC_000913	271761	-1	NC_000913	3169131	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.424e-02	junction_possible_overlap_registers=291	key=NC_000913__271763__-1__NC_000913__3169131__1__2____300__300__0__0	max_left=155	max_left_minus=155	max_left_plus=65	max_min_left=121	max_min_left_minus=121	max_min_left_plus=65	max_min_right=143	max_min_right_minus=143	max_min_right_plus=0	max_pos_hash_score=582	max_right=232	max_right_minus=177	max_right_plus=232	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.424e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=2	side_2_possible_overlap_registers=293	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=4
JC	486	.	NC_000913	273955	1	NC_000913	362107	1	0	alignment_overlap=1	coverage_minus=55	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__273955__1__NC_000913__362106__1__1____300__300__1__0	max_left=293	max_left_minus=292	max_left_plus=293	max_min_left=147	max_min_left_minus=111	max_min_left_plus=147	max_min_right=149	max_min_right_minus=149	max_min_right_plus=145	max_pos_hash_score=584	max_right=298	max_right_minus=298	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=111	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=110
JC	487	.	NC_000913	273955	1	NC_000913	677814	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.154e-02	junction_possible_overlap_registers=293	key=NC_000913__273955__1__NC_000913__677814__-1__0____300__300__1__0	max_left=278	max_left_minus=278	max_left_plus=237	max_min_left=112	max_min_left_minus=112	max_min_left_plus=66	max_min_right=63	max_min_right_minus=46	max_min_right_plus=63	max_pos_hash_score=586	max_right=266	max_right_minus=212	max_right_plus=266	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=6.154e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=8
JC	488	.	NC_000913	275149	-1	NC_000913	362110	-1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__275149__-1__NC_000913__362110__-1__0____300__300__1__0	max_left=293	max_left_minus=288	max_left_plus=293	max_min_left=146	max_min_left_minus=146	max_min_left_plus=96	max_min_right=149	max_min_right_minus=143	max_min_right_plus=149	max_pos_hash_score=586	max_right=297	max_right_minus=295	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.89	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	489	.	NC_000913	275149	-1	NC_000913	579184	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.310e-02	junction_possible_overlap_registers=293	key=NC_000913__275149__-1__NC_000913__579184__1__0____300__300__1__0	max_left=281	max_left_minus=281	max_left_plus=156	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=144	max_min_right_minus=124	max_min_right_plus=144	max_pos_hash_score=586	max_right=144	max_right_minus=124	max_right_plus=144	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=4.310e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=5
JC	490	.	NC_000913	280111	-1	NC_000913	474976	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=4.067e-02	junction_possible_overlap_registers=290	key=NC_000913__280113__-1__NC_000913__474975__1__3____300__300__0__0	max_left=176	max_left_minus=176	max_left_plus=0	max_min_left=129	max_min_left_minus=129	max_min_left_plus=0	max_min_right=135	max_min_right_minus=135	max_min_right_plus=0	max_pos_hash_score=580	max_right=167	max_right_minus=167	max_right_plus=0	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.067e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=2	side_2_possible_overlap_registers=292	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=3
JC	491	.	NC_000913	280111	-1	NC_000913	3169131	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.396e-02	junction_possible_overlap_registers=293	key=NC_000913__280111__-1__NC_000913__3169131__1__0____300__300__0__0	max_left=155	max_left_minus=155	max_left_plus=65	max_min_left=121	max_min_left_minus=121	max_min_left_plus=65	max_min_right=145	max_min_right_minus=145	max_min_right_plus=0	max_pos_hash_score=586	max_right=234	max_right_minus=179	max_right_plus=234	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.396e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=4
JC	492	.	NC_000913	291401	-1	NC_000913	2165000	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=4.255e-02	junction_possible_overlap_registers=293	key=NC_000913__291401__-1__NC_000913__2165000__-1__0____300__300__1__0	max_left=115	max_left_minus=115	max_left_plus=0	max_min_left=115	max_min_left_minus=115	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=240	max_right_minus=240	max_right_plus=0	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.255e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=4
JC	493	.	NC_000913	315229	1	NC_000913	2700289	1	-1	alignment_overlap=-1	coverage_minus=15	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.992e-01	junction_possible_overlap_registers=292	key=NC_000913__315229__1__NC_000913__2700289__1__-1__T__300__300__0__0	max_left=296	max_left_minus=287	max_left_plus=296	max_min_left=137	max_min_left_minus=137	max_min_left_plus=86	max_min_right=31	max_min_right_minus=31	max_min_right_plus=5	max_pos_hash_score=584	max_right=277	max_right_minus=244	max_right_plus=277	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.31	new_junction_read_count=30	polymorphism_frequency=1.992e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=121	side_2_redundant=0	total_non_overlap_reads=23	unique_read_sequence=T
JC	494	.	NC_000913	381260	1	NC_000913	792081	-1	0	alignment_overlap=0	coverage_minus=51	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__381260__1__NC_000913__792081__-1__0____300__300__1__0	max_left=296	max_left_minus=287	max_left_plus=296	max_min_left=148	max_min_left_minus=145	max_min_left_plus=148	max_min_right=136	max_min_right_minus=136	max_min_right_plus=133	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=292	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.98	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	495	.	NC_000913	381260	1	NC_000913	1217464	1	0	alignment_overlap=1	coverage_minus=59	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__381260__1__NC_000913__1217463__1__1____300__300__1__0	max_left=295	max_left_minus=292	max_left_plus=295	max_min_left=147	max_min_left_minus=142	max_min_left_plus=147	max_min_right=142	max_min_right_minus=142	max_min_right_plus=127	max_pos_hash_score=584	max_right=297	max_right_minus=297	max_right_plus=286	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.09	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=106
JC	496	.	NC_000913	382590	-1	NC_000913	792077	1	0	alignment_overlap=0	coverage_minus=54	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__382590__-1__NC_000913__792077__1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=286	max_min_left=142	max_min_left_minus=142	max_min_left_plus=128	max_min_right=141	max_min_right_minus=141	max_min_right_plus=131	max_pos_hash_score=586	max_right=299	max_right_minus=293	max_right_plus=299	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.99	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=94
JC	497	.	NC_000913	474976	1	NC_000913	1470516	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.040e-02	junction_possible_overlap_registers=292	key=NC_000913__474975__1__NC_000913__1470516__-1__1____300__300__0__1	max_left=169	max_left_minus=0	max_left_plus=169	max_min_left=137	max_min_left_minus=0	max_min_left_plus=137	max_min_right=129	max_min_right_minus=0	max_min_right_plus=129	max_pos_hash_score=584	max_right=176	max_right_minus=0	max_right_plus=176	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.040e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	498	.	NC_000913	678920	-1	NC_000913	687851	1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__678920__-1__NC_000913__687851__1__0____300__300__0__1	max_left=298	max_left_minus=269	max_left_plus=298	max_min_left=147	max_min_left_minus=105	max_min_left_plus=147	max_min_right=142	max_min_right_minus=142	max_min_right_plus=133	max_pos_hash_score=586	max_right=293	max_right_minus=293	max_right_plus=254	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.90	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=88
JC	499	.	NC_000913	696466	-1	NC_000913	696793	1	0	alignment_overlap=10	coverage_minus=5	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.165e-01	junction_possible_overlap_registers=283	key=NC_000913__696466__-1__NC_000913__696783__1__10____300__300__0__0	max_left=254	max_left_minus=180	max_left_plus=254	max_min_left=28	max_min_left_minus=0	max_min_left_plus=28	max_min_right=91	max_min_right_minus=91	max_min_right_plus=91	max_pos_hash_score=566	max_right=145	max_right_minus=91	max_right_plus=145	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.13	new_junction_read_count=12	polymorphism_frequency=1.165e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=10	side_1_possible_overlap_registers=293	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=12
JC	500	.	NC_000913	696506	-1	NC_000913	697057	1	-45	alignment_overlap=-45	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.656e-02	junction_possible_overlap_registers=248	key=NC_000913__696506__-1__NC_000913__697057__1__-45__AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT__300__300__0__0	max_left=71	max_left_minus=71	max_left_plus=71	max_min_left=71	max_min_left_minus=71	max_min_left_plus=71	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=496	max_right=230	max_right_minus=230	max_right_plus=133	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=7.656e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT
JC	501	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=6	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.510e-01	junction_possible_overlap_registers=215	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=116	max_left_minus=116	max_left_plus=116	max_min_left=70	max_min_left_minus=70	max_min_left_plus=0	max_min_right=55	max_min_right_minus=55	max_min_right_plus=55	max_pos_hash_score=430	max_right=152	max_right_minus=152	max_right_plus=55	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.11	new_junction_read_count=8	polymorphism_frequency=1.510e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.66	side_1_overlap=78	side_1_possible_overlap_registers=293	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=8
JC	502	.	NC_000913	732239	-1	NC_000913	3622029	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=8.085e-02	junction_possible_overlap_registers=281	key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0	max_left=260	max_left_minus=260	max_left_plus=213	max_min_left=81	max_min_left_minus=81	max_min_left_plus=0	max_min_right=73	max_min_right_minus=25	max_min_right_plus=73	max_pos_hash_score=562	max_right=206	max_right_minus=206	max_right_plus=73	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=8.085e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=12	side_1_possible_overlap_registers=293	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=3
JC	503	.	NC_000913	732239	-1	NC_000913	3765020	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=7.671e-02	junction_possible_overlap_registers=281	key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0	max_left=260	max_left_minus=260	max_left_plus=213	max_min_left=81	max_min_left_minus=81	max_min_left_plus=0	max_min_right=73	max_min_right_minus=25	max_min_right_plus=73	max_pos_hash_score=562	max_right=206	max_right_minus=206	max_right_plus=73	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=7.671e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=12	side_1_possible_overlap_registers=293	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=3
JC	504	.	NC_000913	781446	-1	NC_000913	781655	1	0	alignment_overlap=78	coverage_minus=2	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.840e-01	junction_possible_overlap_registers=215	key=NC_000913__781446__-1__NC_000913__781577__1__78____300__300__0__0	max_left=161	max_left_minus=161	max_left_plus=98	max_min_left=98	max_min_left_minus=0	max_min_left_plus=98	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=430	max_right=220	max_right_minus=88	max_right_plus=220	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.14	new_junction_read_count=10	polymorphism_frequency=1.840e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=78	side_1_possible_overlap_registers=293	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=10
JC	505	.	NC_000913	781577	1	NC_000913	2521129	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.525e-02	junction_possible_overlap_registers=292	key=NC_000913__781577__1__NC_000913__2521129__-1__-1__G__300__300__0__0	max_left=134	max_left_minus=70	max_left_plus=134	max_min_left=134	max_min_left_minus=70	max_min_left_plus=134	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=584	max_right=213	max_right_minus=213	max_right_plus=213	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=6.525e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=G
JC	506	.	NC_000913	1034134	1	NC_000913	1469296	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.494e-02	junction_possible_overlap_registers=291	key=NC_000913__1034132__1__NC_000913__1469296__1__2____300__300__0__1	max_left=292	max_left_minus=252	max_left_plus=292	max_min_left=121	max_min_left_minus=0	max_min_left_plus=121	max_min_right=79	max_min_right_minus=45	max_min_right_plus=79	max_pos_hash_score=582	max_right=177	max_right_minus=45	max_right_plus=177	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=6.494e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	507	.	NC_000913	1094245	1	NC_000913	2700293	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.458e-01	junction_possible_overlap_registers=293	key=NC_000913__1094245__1__NC_000913__2700293__-1__0____300__300__1__0	max_left=298	max_left_minus=298	max_left_plus=297	max_min_left=68	max_min_left_minus=0	max_min_left_plus=68	max_min_right=116	max_min_right_minus=5	max_min_right_plus=116	max_pos_hash_score=586	max_right=231	max_right_minus=5	max_right_plus=231	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.22	new_junction_read_count=21	polymorphism_frequency=1.458e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.26	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=123	side_2_redundant=0	total_non_overlap_reads=9
JC	508	.	NC_000913	1162132	1	NC_000913	1470516	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=4.717e-02	junction_possible_overlap_registers=293	key=NC_000913__1162132__1__NC_000913__1470516__-1__0____300__300__0__1	max_left=231	max_left_minus=231	max_left_plus=210	max_min_left=40	max_min_left_minus=0	max_min_left_plus=40	max_min_right=89	max_min_right_minus=69	max_min_right_plus=89	max_pos_hash_score=586	max_right=289	max_right_minus=69	max_right_plus=289	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=4.717e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	509	.	NC_000913	1217468	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=46	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1217468__-1__NC_000913__1467910__1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=265	max_min_left=146	max_min_left_minus=146	max_min_left_plus=138	max_min_right=149	max_min_right_minus=149	max_min_right_plus=142	max_pos_hash_score=586	max_right=295	max_right_minus=289	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=101
JC	510	.	NC_000913	1247435	-1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.918e-02	junction_possible_overlap_registers=293	key=NC_000913__1247435__-1__NC_000913__2101749__1__0____300__300__0__1	max_left=245	max_left_minus=195	max_left_plus=245	max_min_left=135	max_min_left_minus=78	max_min_left_plus=135	max_min_right=105	max_min_right_minus=105	max_min_right_plus=55	max_pos_hash_score=586	max_right=294	max_right_minus=294	max_right_plus=165	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=4.918e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	511	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.181e-02	junction_possible_overlap_registers=273	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=261	max_left_minus=261	max_left_plus=243	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=34	max_min_right_minus=34	max_min_right_plus=34	max_pos_hash_score=546	max_right=34	max_right_minus=34	max_right_plus=34	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=6.181e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=20	side_1_possible_overlap_registers=293	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=4
JC	512	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=6	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=1.156e-01	junction_possible_overlap_registers=273	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=243	max_left_minus=243	max_left_plus=127	max_min_left=127	max_min_left_minus=64	max_min_left_plus=127	max_min_right=122	max_min_right_minus=122	max_min_right_plus=0	max_pos_hash_score=546	max_right=197	max_right_minus=197	max_right_plus=153	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=1.156e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=20	side_1_possible_overlap_registers=293	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=7
JC	513	.	NC_000913	1287262	-1	NC_000913	1287382	1	0	alignment_overlap=21	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.396e-02	junction_possible_overlap_registers=272	key=NC_000913__1287262__-1__NC_000913__1287361__1__21____300__300__0__0	max_left=103	max_left_minus=103	max_left_plus=44	max_min_left=103	max_min_left_minus=103	max_min_left_plus=44	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=544	max_right=235	max_right_minus=176	max_right_plus=235	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.396e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=21	side_1_possible_overlap_registers=293	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=272	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=3
JC	514	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=75	coverage_plus=74	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=285	max_left_plus=294	max_min_left=147	max_min_left_minus=127	max_min_left_plus=147	max_min_right=146	max_min_right_minus=146	max_min_right_plus=140	max_pos_hash_score=578	max_right=295	max_right_minus=287	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.60	new_junction_read_count=154	polymorphism_frequency=9.936e-01	pos_hash_score=89	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=4	side_1_possible_overlap_registers=293	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=149
JC	515	.	NC_000913	1370057	-1	NC_000913	2067353	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.439e-02	junction_possible_overlap_registers=293	key=NC_000913__1370057__-1__NC_000913__2067353__-1__0____300__300__0__0	max_left=296	max_left_minus=277	max_left_plus=296	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=36	max_min_right_minus=23	max_min_right_plus=36	max_pos_hash_score=586	max_right=36	max_right_minus=23	max_right_plus=36	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.439e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=120	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=3
JC	516	.	NC_000913	1370057	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.250e-02	junction_possible_overlap_registers=293	key=NC_000913__1370057__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=296	max_left_minus=277	max_left_plus=296	max_min_left=120	max_min_left_minus=120	max_min_left_plus=0	max_min_right=114	max_min_right_minus=23	max_min_right_plus=114	max_pos_hash_score=586	max_right=208	max_right_minus=208	max_right_plus=114	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=6.250e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=120	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=8
JC	517	.	NC_000913	1396044	1	NC_000913	1743493	-1	0	alignment_overlap=0	coverage_minus=60	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1396044__1__NC_000913__1743493__-1__0____300__300__1__0	max_left=290	max_left_minus=288	max_left_plus=290	max_min_left=130	max_min_left_minus=130	max_min_left_plus=125	max_min_right=139	max_min_right_minus=139	max_min_right_plus=133	max_pos_hash_score=586	max_right=298	max_right_minus=298	max_right_plus=288	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.14	new_junction_read_count=111	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=108
JC	518	.	NC_000913	1397238	-1	NC_000913	1743490	1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=29	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1397238__-1__NC_000913__1743490__1__0____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=289	max_min_left=149	max_min_left_minus=123	max_min_left_plus=149	max_min_right=147	max_min_right_minus=147	max_min_right_plus=127	max_pos_hash_score=586	max_right=297	max_right_minus=297	max_right_plus=283	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	519	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=294	max_left_minus=281	max_left_plus=294	max_min_left=139	max_min_left_minus=139	max_min_left_plus=139	max_min_right=143	max_min_right_minus=143	max_min_right_plus=132	max_pos_hash_score=586	max_right=296	max_right_minus=296	max_right_plus=295	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.01	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	520	.	NC_000913	1467910	1	NC_000913	1656171	-1	0	alignment_overlap=1	coverage_minus=39	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1467910__1__NC_000913__1656172__-1__1____300__300__1__0	max_left=257	max_left_minus=257	max_left_plus=251	max_min_left=148	max_min_left_minus=148	max_min_left_plus=141	max_min_right=149	max_min_right_minus=139	max_min_right_plus=149	max_pos_hash_score=584	max_right=294	max_right_minus=274	max_right_plus=294	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.81	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	521	.	NC_000913	1469240	-1	NC_000913	1656167	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1469240__-1__NC_000913__1656167__1__0____300__300__1__0	max_left=296	max_left_minus=287	max_left_plus=296	max_min_left=116	max_min_left_minus=116	max_min_left_plus=0	max_min_right=114	max_min_right_minus=114	max_min_right_plus=89	max_pos_hash_score=586	max_right=290	max_right_minus=290	max_right_plus=89	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.27	new_junction_read_count=26	polymorphism_frequency=9.274e-01	pos_hash_score=16	prediction=consensus	read_count_offset=5	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=20
JC	522	.	NC_000913	1469240	-1	NC_000913	1671703	1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1469240__-1__NC_000913__1671703__1__0____300__300__1__0	max_left=297	max_left_minus=292	max_left_plus=297	max_min_left=143	max_min_left_minus=143	max_min_left_plus=106	max_min_right=141	max_min_right_minus=141	max_min_right_plus=114	max_pos_hash_score=586	max_right=294	max_right_minus=294	max_right_plus=289	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.93	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90
JC	523	.	NC_000913	1469241	-1	NC_000913	1469295	1	-8	alignment_overlap=-8	coverage_minus=57	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=285	key=NC_000913__1469241__-1__NC_000913__1469295__1__-8__GTACGTAA__300__300__1__1	max_left=288	max_left_minus=288	max_left_plus=264	max_min_left=143	max_min_left_minus=138	max_min_left_plus=143	max_min_right=143	max_min_right_minus=143	max_min_right_plus=140	max_pos_hash_score=570	max_right=286	max_right_minus=286	max_right_plus=276	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=114	polymorphism_frequency=NA	pos_hash_score=66	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=110	unique_read_sequence=GTACGTAA
JC	524	.	NC_000913	1651548	-1	NC_000913	1671707	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=16	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1651548__-1__NC_000913__1671707__-1__0____300__300__1__0	max_left=271	max_left_minus=271	max_left_plus=261	max_min_left=142	max_min_left_minus=142	max_min_left_plus=127	max_min_right=129	max_min_right_minus=111	max_min_right_plus=129	max_pos_hash_score=586	max_right=293	max_right_minus=261	max_right_plus=293	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.35	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	525	.	NC_000913	1879829	1	NC_000913	2514274	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.444e-02	junction_possible_overlap_registers=291	key=NC_000913__1879827__1__NC_000913__2514274__1__2____300__300__0__1	max_left=261	max_left_minus=261	max_left_plus=170	max_min_left=116	max_min_left_minus=0	max_min_left_plus=116	max_min_right=128	max_min_right_minus=34	max_min_right_plus=128	max_pos_hash_score=582	max_right=235	max_right_minus=34	max_right_plus=235	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.444e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	526	.	NC_000913	1887137	-1	NC_000913	1887408	1	0	alignment_overlap=14	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.936e-02	junction_possible_overlap_registers=279	key=NC_000913__1887137__-1__NC_000913__1887394__1__14____300__300__0__0	max_left=161	max_left_minus=116	max_left_plus=161	max_min_left=116	max_min_left_minus=116	max_min_left_plus=30	max_min_right=125	max_min_right_minus=0	max_min_right_plus=125	max_pos_hash_score=558	max_right=261	max_right_minus=228	max_right_plus=261	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=6.936e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=14	side_1_possible_overlap_registers=293	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=5
JC	527	.	NC_000913	1979270	-1	NC_000913	2165000	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.250e-02	junction_possible_overlap_registers=293	key=NC_000913__1979270__-1__NC_000913__2165000__-1__0____300__300__1__0	max_left=230	max_left_minus=134	max_left_plus=230	max_min_left=134	max_min_left_minus=134	max_min_left_plus=0	max_min_right=67	max_min_right_minus=0	max_min_right_plus=67	max_pos_hash_score=586	max_right=240	max_right_minus=240	max_right_plus=67	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=6.250e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=6
JC	528	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=299	max_left_minus=294	max_left_plus=299	max_min_left=143	max_min_left_minus=143	max_min_left_plus=130	max_min_right=150	max_min_right_minus=145	max_min_right_plus=150	max_pos_hash_score=586	max_right=299	max_right_minus=299	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=96
JC	529	.	NC_000913	2067353	-1	NC_000913	4002526	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.274e-02	junction_possible_overlap_registers=293	key=NC_000913__2067353__-1__NC_000913__4002526__1__0____300__300__0__0	max_left=50	max_left_minus=14	max_left_plus=50	max_min_left=50	max_min_left_minus=14	max_min_left_plus=50	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=286	max_right_minus=286	max_right_plus=282	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=4.274e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=4
JC	530	.	NC_000913	2070271	-1	NC_000913	2452057	1	0	alignment_overlap=2	coverage_minus=56	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__2070271__-1__NC_000913__2452055__1__2____300__300__1__0	max_left=296	max_left_minus=287	max_left_plus=296	max_min_left=145	max_min_left_minus=145	max_min_left_plus=115	max_min_right=141	max_min_right_minus=127	max_min_right_plus=141	max_pos_hash_score=582	max_right=295	max_right_minus=295	max_right_plus=292	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.94	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	531	.	NC_000913	2101749	1	NC_000913	2174890	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=2.903e-01	junction_possible_overlap_registers=293	key=NC_000913__2101749__1__NC_000913__2174890__1__0____300__300__1__0	max_left=275	max_left_minus=275	max_left_plus=248	max_min_left=112	max_min_left_minus=112	max_min_left_plus=110	max_min_right=141	max_min_right_minus=141	max_min_right_plus=52	max_pos_hash_score=586	max_right=266	max_right_minus=187	max_right_plus=266	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=2.903e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.23	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=22	side_2_redundant=0	total_non_overlap_reads=8
JC	532	.	NC_000913	2170171	1	NC_000913	2700291	1	0	alignment_overlap=2	coverage_minus=15	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.987e-01	junction_possible_overlap_registers=291	key=NC_000913__2170171__1__NC_000913__2700289__1__2____300__300__1__0	max_left=297	max_left_minus=288	max_left_plus=297	max_min_left=138	max_min_left_minus=138	max_min_left_plus=87	max_min_right=29	max_min_right_minus=29	max_min_right_plus=3	max_pos_hash_score=582	max_right=275	max_right_minus=242	max_right_plus=275	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.31	new_junction_read_count=30	polymorphism_frequency=1.987e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=121	side_2_redundant=0	total_non_overlap_reads=23
JC	533	.	NC_000913	2171428	-1	NC_000913	2176471	1	0	alignment_overlap=1	coverage_minus=49	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__2171428__-1__NC_000913__2176470__1__1____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=226	max_min_left=136	max_min_left_minus=128	max_min_left_plus=136	max_min_right=148	max_min_right_minus=130	max_min_right_plus=148	max_pos_hash_score=584	max_right=279	max_right_minus=279	max_right_plus=279	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.83	new_junction_read_count=81	polymorphism_frequency=8.182e-01	pos_hash_score=53	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.19	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=18	side_2_redundant=0	total_non_overlap_reads=79
JC	534	.	NC_000913	2288919	1	NC_000913	2788794	-1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=54	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2288919__1__NC_000913__2788794__-1__0____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=281	max_min_left=147	max_min_left_minus=144	max_min_left_plus=147	max_min_right=146	max_min_right_minus=146	max_min_right_plus=141	max_pos_hash_score=586	max_right=298	max_right_minus=298	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=110	polymorphism_frequency=9.909e-01	pos_hash_score=73	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=109
JC	535	.	NC_000913	2288919	1	NC_000913	3638512	-1	0	alignment_overlap=0	coverage_minus=26	coverage_plus=31	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2288919__1__NC_000913__3638512__-1__0____300__300__1__0	max_left=289	max_left_minus=254	max_left_plus=289	max_min_left=144	max_min_left_minus=144	max_min_left_plus=136	max_min_right=137	max_min_right_minus=137	max_min_right_plus=91	max_pos_hash_score=586	max_right=296	max_right_minus=296	max_right_plus=294	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.58	new_junction_read_count=57	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=57
JC	536	.	NC_000913	2288919	1	NC_000913	4002529	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=8.800e-02	junction_possible_overlap_registers=293	key=NC_000913__2288919__1__NC_000913__4002529__-1__0____300__300__1__0	max_left=245	max_left_minus=245	max_left_plus=208	max_min_left=112	max_min_left_minus=112	max_min_left_plus=64	max_min_right=135	max_min_right_minus=135	max_min_right_plus=129	max_pos_hash_score=586	max_right=294	max_right_minus=187	max_right_plus=294	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.11	new_junction_read_count=11	polymorphism_frequency=8.800e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=11
JC	537	.	NC_000913	2290113	-1	NC_000913	2788791	1	0	alignment_overlap=0	coverage_minus=67	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2290113__-1__NC_000913__2788791__1__0____300__300__1__0	max_left=288	max_left_minus=288	max_left_plus=285	max_min_left=146	max_min_left_minus=130	max_min_left_plus=146	max_min_right=138	max_min_right_minus=138	max_min_right_plus=127	max_pos_hash_score=586	max_right=296	max_right_minus=296	max_right_plus=288	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.24	new_junction_read_count=121	polymorphism_frequency=9.917e-01	pos_hash_score=77	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=120
JC	538	.	NC_000913	2290113	-1	NC_000913	3638509	1	0	alignment_overlap=0	coverage_minus=65	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2290113__-1__NC_000913__3638509__1__0____300__300__1__0	max_left=290	max_left_minus=288	max_left_plus=290	max_min_left=146	max_min_left_minus=146	max_min_left_plus=133	max_min_right=148	max_min_right_minus=144	max_min_right_plus=148	max_pos_hash_score=586	max_right=296	max_right_minus=296	max_right_plus=291	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103
JC	539	.	NC_000913	2290113	-1	NC_000913	4002526	1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.515e-01	junction_possible_overlap_registers=293	key=NC_000913__2290113__-1__NC_000913__4002526__1__0____300__300__1__0	max_left=288	max_left_minus=288	max_left_plus=281	max_min_left=142	max_min_left_minus=58	max_min_left_plus=142	max_min_right=139	max_min_right_minus=139	max_min_right_plus=78	max_pos_hash_score=586	max_right=286	max_right_minus=286	max_right_plus=282	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.20	new_junction_read_count=20	polymorphism_frequency=1.515e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=19
JC	540	.	NC_000913	2452061	-1	NC_000913	2996361	1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=66	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2452061__-1__NC_000913__2996361__1__0____300__300__0__1	max_left=287	max_left_minus=287	max_left_plus=280	max_min_left=148	max_min_left_minus=148	max_min_left_plus=140	max_min_right=149	max_min_right_minus=129	max_min_right_plus=149	max_pos_hash_score=586	max_right=289	max_right_minus=289	max_right_plus=261	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=107	polymorphism_frequency=9.813e-01	pos_hash_score=66	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=103
JC	541	.	NC_000913	2518116	-1	NC_000913	2518232	1	0	alignment_overlap=81	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.131e-01	junction_possible_overlap_registers=212	key=NC_000913__2518116__-1__NC_000913__2518151__1__81____300__300__0__0	max_left=199	max_left_minus=199	max_left_plus=62	max_min_left=69	max_min_left_minus=69	max_min_left_plus=62	max_min_right=21	max_min_right_minus=21	max_min_right_plus=0	max_pos_hash_score=424	max_right=205	max_right_minus=149	max_right_plus=205	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=1.131e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=81	side_1_possible_overlap_registers=293	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=6
JC	542	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=8.269e-02	junction_possible_overlap_registers=285	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=221	max_left_minus=113	max_left_plus=221	max_min_left=113	max_min_left_minus=113	max_min_left_plus=88	max_min_right=127	max_min_right_minus=0	max_min_right_plus=127	max_pos_hash_score=570	max_right=239	max_right_minus=234	max_right_plus=239	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=8.269e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=8	side_1_possible_overlap_registers=293	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=7
JC	543	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=7	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.402e-01	junction_possible_overlap_registers=268	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=217	max_left_minus=202	max_left_plus=217	max_min_left=28	max_min_left_minus=5	max_min_left_plus=28	max_min_right=101	max_min_right_minus=101	max_min_right_plus=101	max_pos_hash_score=536	max_right=273	max_right_minus=270	max_right_plus=273	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.17	new_junction_read_count=15	polymorphism_frequency=1.402e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=25	side_1_possible_overlap_registers=293	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=15
JC	544	.	NC_000913	2817783	1	NC_000913	2817922	-1	0	alignment_overlap=20	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.037e-01	junction_possible_overlap_registers=273	key=NC_000913__2817783__1__NC_000913__2817942__-1__20____300__300__0__0	max_left=65	max_left_minus=46	max_left_plus=65	max_min_left=65	max_min_left_minus=46	max_min_left_plus=65	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=546	max_right=252	max_right_minus=243	max_right_plus=252	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.037e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=20	side_1_possible_overlap_registers=293	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=8
JC	545	.	NC_000913	2817942	-1	NC_000913	2818078	1	0	alignment_overlap=20	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.293e-01	junction_possible_overlap_registers=273	key=NC_000913__2817942__-1__NC_000913__2818058__1__20____300__300__0__0	max_left=252	max_left_minus=252	max_left_plus=243	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=65	max_min_right_minus=65	max_min_right_plus=46	max_pos_hash_score=546	max_right=65	max_right_minus=65	max_right_plus=46	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.293e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=20	side_1_possible_overlap_registers=293	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=8
JC	546	.	NC_000913	2817942	-1	NC_000913	2818492	1	0	alignment_overlap=20	coverage_minus=4	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.289e-01	junction_possible_overlap_registers=273	key=NC_000913__2817942__-1__NC_000913__2818472__1__20____300__300__0__0	max_left=252	max_left_minus=252	max_left_plus=243	max_min_left=125	max_min_left_minus=0	max_min_left_plus=125	max_min_right=115	max_min_right_minus=115	max_min_right_plus=46	max_pos_hash_score=546	max_right=156	max_right_minus=115	max_right_plus=156	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.12	new_junction_read_count=11	polymorphism_frequency=1.289e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=20	side_1_possible_overlap_registers=293	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=9
JC	547	.	NC_000913	2867279	-1	NC_000913	2867288	1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2867279__-1__NC_000913__2867288__1__0____300__300__0__0	max_left=293	max_left_minus=293	max_left_plus=287	max_min_left=129	max_min_left_minus=127	max_min_left_plus=129	max_min_right=141	max_min_right_minus=141	max_min_right_plus=140	max_pos_hash_score=586	max_right=299	max_right_minus=299	max_right_plus=288	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	548	.	NC_000913	2877716	-1	NC_000913	2878022	1	0	alignment_overlap=16	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.894e-02	junction_possible_overlap_registers=277	key=NC_000913__2877716__-1__NC_000913__2878006__1__16____300__300__0__0	max_left=210	max_left_minus=210	max_left_plus=111	max_min_left=111	max_min_left_minus=79	max_min_left_plus=111	max_min_right=74	max_min_right_minus=74	max_min_right_plus=0	max_pos_hash_score=554	max_right=205	max_right_minus=205	max_right_plus=172	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.894e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=16	side_1_possible_overlap_registers=293	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=3
JC	549	.	NC_000913	2913392	1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=53	coverage_plus=74	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1	max_left=295	max_left_minus=290	max_left_plus=295	max_min_left=149	max_min_left_minus=149	max_min_left_plus=141	max_min_right=147	max_min_right_minus=133	max_min_right_plus=147	max_pos_hash_score=586	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.39	new_junction_read_count=136	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=127
JC	550	.	NC_000913	2913396	-1	NC_000913	2996361	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=54	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1	max_left=295	max_left_minus=295	max_left_plus=269	max_min_left=141	max_min_left_minus=141	max_min_left_plus=140	max_min_right=139	max_min_right_minus=133	max_min_right_plus=139	max_pos_hash_score=586	max_right=279	max_right_minus=270	max_right_plus=279	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.01	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=98
JC	551	.	NC_000913	2947467	-1	NC_000913	2947688	1	0	alignment_overlap=83	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.014e-01	junction_possible_overlap_registers=210	key=NC_000913__2947467__-1__NC_000913__2947605__1__83____300__300__0__0	max_left=201	max_left_minus=173	max_left_plus=201	max_min_left=76	max_min_left_minus=0	max_min_left_plus=76	max_min_right=82	max_min_right_minus=82	max_min_right_plus=62	max_pos_hash_score=420	max_right=141	max_right_minus=82	max_right_plus=141	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.09	new_junction_read_count=6	polymorphism_frequency=1.014e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=83	side_1_possible_overlap_registers=293	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=6
JC	552	.	NC_000913	3067128	1	NC_000913	3130146	1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=73	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3067128__1__NC_000913__3130146__1__0____300__300__0__1	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=143	max_min_left_minus=143	max_min_left_plus=139	max_min_right=146	max_min_right_minus=131	max_min_right_plus=146	max_pos_hash_score=586	max_right=289	max_right_minus=244	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.18	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=114
JC	553	.	NC_000913	3067131	-1	NC_000913	3131340	-1	0	alignment_overlap=0	coverage_minus=64	coverage_plus=75	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3067131__-1__NC_000913__3131340__-1__0____300__300__0__1	max_left=298	max_left_minus=296	max_left_plus=298	max_min_left=146	max_min_left_minus=146	max_min_left_plus=136	max_min_right=146	max_min_right_minus=142	max_min_right_plus=146	max_pos_hash_score=586	max_right=294	max_right_minus=294	max_right_plus=291	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.45	new_junction_read_count=142	polymorphism_frequency=1.000e+00	pos_hash_score=84	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=139
JC	554	.	NC_000913	3084977	-1	NC_000913	3085260	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.301e-02	junction_possible_overlap_registers=282	key=NC_000913__3084977__-1__NC_000913__3085249__1__11____300__300__0__0	max_left=164	max_left_minus=164	max_left_plus=132	max_min_left=132	max_min_left_minus=132	max_min_left_plus=132	max_min_right=123	max_min_right_minus=123	max_min_right_plus=0	max_pos_hash_score=564	max_right=204	max_right_minus=135	max_right_plus=204	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.301e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=11	side_1_possible_overlap_registers=293	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=4
JC	555	.	NC_000913	3130146	1	NC_000913	3136518	-1	0	alignment_overlap=0	coverage_minus=87	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3130146__1__NC_000913__3136518__-1__0____300__300__1__0	max_left=293	max_left_minus=288	max_left_plus=293	max_min_left=146	max_min_left_minus=146	max_min_left_plus=126	max_min_right=149	max_min_right_minus=149	max_min_right_plus=147	max_pos_hash_score=586	max_right=298	max_right_minus=298	max_right_plus=291	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.51	new_junction_read_count=147	polymorphism_frequency=1.000e+00	pos_hash_score=82	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=144
JC	556	.	NC_000913	3131340	-1	NC_000913	3136515	1	0	alignment_overlap=0	coverage_minus=60	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3131340__-1__NC_000913__3136515__1__0____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=293	max_min_left=139	max_min_left_minus=139	max_min_left_plus=120	max_min_right=148	max_min_right_minus=148	max_min_right_plus=134	max_pos_hash_score=586	max_right=298	max_right_minus=298	max_right_plus=291	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.07	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=100
JC	557	.	NC_000913	3169131	1	NC_000913	4507459	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.452e-02	junction_possible_overlap_registers=293	key=NC_000913__3169131__1__NC_000913__4507459__1__0____300__300__0__1	max_left=234	max_left_minus=234	max_left_plus=179	max_min_left=145	max_min_left_minus=0	max_min_left_plus=145	max_min_right=121	max_min_right_minus=65	max_min_right_plus=121	max_pos_hash_score=586	max_right=254	max_right_minus=65	max_right_plus=254	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=6.452e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	558	.	NC_000913	3186096	1	NC_000913	3367057	1	0	alignment_overlap=0	coverage_minus=68	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3186096__1__NC_000913__3367057__1__0____300__300__1__0	max_left=295	max_left_minus=292	max_left_plus=295	max_min_left=147	max_min_left_minus=147	max_min_left_plus=124	max_min_right=148	max_min_right_minus=148	max_min_right_plus=145	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=292	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.14	new_junction_read_count=111	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=110
JC	559	.	NC_000913	3187426	-1	NC_000913	3367061	-1	0	alignment_overlap=1	coverage_minus=46	coverage_plus=29	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__3187426__-1__NC_000913__3367062__-1__1____300__300__1__0	max_left=288	max_left_minus=278	max_left_plus=288	max_min_left=148	max_min_left_minus=148	max_min_left_plus=146	max_min_right=139	max_min_right_minus=139	max_min_right_plus=139	max_pos_hash_score=584	max_right=285	max_right_minus=283	max_right_plus=285	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.79	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=75
JC	560	.	NC_000913	3282905	1	NC_000913	3282925	-1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.201e-02	junction_possible_overlap_registers=288	key=NC_000913__3282905__1__NC_000913__3282930__-1__5____300__300__0__0	max_left=169	max_left_minus=169	max_left_plus=113	max_min_left=113	max_min_left_minus=0	max_min_left_plus=113	max_min_right=126	max_min_right_minus=126	max_min_right_plus=0	max_pos_hash_score=576	max_right=293	max_right_minus=126	max_right_plus=293	neg_log10_pos_hash_p_value=9.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.201e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=5	side_1_possible_overlap_registers=293	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=3
JC	561	.	NC_000913	3437349	1	NC_000913	4508679	-1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3437349__1__NC_000913__4508679__-1__0____300__300__0__1	max_left=292	max_left_minus=289	max_left_plus=292	max_min_left=143	max_min_left_minus=105	max_min_left_plus=143	max_min_right=140	max_min_right_minus=140	max_min_right_plus=139	max_pos_hash_score=586	max_right=278	max_right_minus=263	max_right_plus=278	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.84	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	read_count_offset=2	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=81
JC	562	.	NC_000913	3437350	-1	NC_000913	4507459	1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=61	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3437350__-1__NC_000913__4507459__1__0____300__300__0__1	max_left=294	max_left_minus=294	max_left_plus=276	max_min_left=143	max_min_left_minus=143	max_min_left_plus=131	max_min_right=148	max_min_right_minus=136	max_min_right_plus=148	max_pos_hash_score=586	max_right=296	max_right_minus=296	max_right_plus=290	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.25	new_junction_read_count=122	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	read_count_offset=2	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=119
JC	563	.	NC_000913	3648146	-1	NC_000913	3648378	1	0	alignment_overlap=58	coverage_minus=6	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.174e-02	junction_possible_overlap_registers=235	key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0	max_left=228	max_left_minus=212	max_left_plus=228	max_min_left=92	max_min_left_minus=92	max_min_left_plus=92	max_min_right=51	max_min_right_minus=51	max_min_right_plus=14	max_pos_hash_score=470	max_right=239	max_right_minus=239	max_right_plus=215	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.13	new_junction_read_count=10	polymorphism_frequency=8.174e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.41	side_1_overlap=58	side_1_possible_overlap_registers=293	side_1_read_count=138	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.46	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=9
JC	564	.	NC_000913	3708466	-1	NC_000913	3708635	1	0	alignment_overlap=108	coverage_minus=22	coverage_plus=24	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=185	key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0	max_left=181	max_left_minus=151	max_left_plus=181	max_min_left=91	max_min_left_minus=90	max_min_left_plus=91	max_min_right=91	max_min_right_minus=88	max_min_right_plus=91	max_pos_hash_score=370	max_right=189	max_right_minus=189	max_right_plus=189	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.75	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=108	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=185	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	565	.	NC_000913	3822646	1	NC_000913	3822651	-1	0	alignment_overlap=0	coverage_minus=27	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0	max_left=297	max_left_minus=238	max_left_plus=297	max_min_left=146	max_min_left_minus=146	max_min_left_plus=142	max_min_right=138	max_min_right_minus=136	max_min_right_plus=138	max_pos_hash_score=586	max_right=294	max_right_minus=294	max_right_plus=271	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.71	new_junction_read_count=69	polymorphism_frequency=9.324e-01	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=68
JC	566	.	NC_000913	3931454	-1	NC_000913	3938492	1	0	alignment_overlap=7	coverage_minus=54	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__3931454__-1__NC_000913__3938485__1__7____300__300__0__0	max_left=285	max_left_minus=279	max_left_plus=285	max_min_left=145	max_min_left_minus=142	max_min_left_plus=145	max_min_right=134	max_min_right_minus=134	max_min_right_plus=114	max_pos_hash_score=572	max_right=290	max_right_minus=290	max_right_plus=288	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.27	new_junction_read_count=121	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=116
JC	567	.	NC_000913	3959445	-1	NC_000913	3959501	1	-14	alignment_overlap=-14	coverage_minus=38	coverage_plus=26	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=279	key=NC_000913__3959445__-1__NC_000913__3959501__1__-14__TAGCGATTCAGAGT__300__300__0__0	max_left=275	max_left_minus=269	max_left_plus=275	max_min_left=136	max_min_left_minus=123	max_min_left_plus=136	max_min_right=141	max_min_right_minus=141	max_min_right_plus=108	max_pos_hash_score=558	max_right=283	max_right_minus=280	max_right_plus=283	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.71	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=64	unique_read_sequence=TAGCGATTCAGAGT
JC	568	.	NC_000913	4130166	-1	NC_000913	4130629	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.340e-02	junction_possible_overlap_registers=281	key=NC_000913__4130166__-1__NC_000913__4130617__1__12____300__300__0__0	max_left=122	max_left_minus=122	max_left_plus=122	max_min_left=122	max_min_left_minus=122	max_min_left_plus=122	max_min_right=72	max_min_right_minus=72	max_min_right_plus=72	max_pos_hash_score=562	max_right=128	max_right_minus=128	max_right_plus=128	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=6.340e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=12	side_1_possible_overlap_registers=293	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=4
JC	569	.	NC_000913	4498181	1	NC_000913	4499512	-1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=21	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=293	key=NC_000913__4498181__1__NC_000913__4499512__-1__0____300__300__1__1	max_left=294	max_left_minus=270	max_left_plus=294	max_min_left=147	max_min_left_minus=147	max_min_left_plus=127	max_min_right=150	max_min_right_minus=140	max_min_right_plus=150	max_pos_hash_score=586	max_right=294	max_right_minus=245	max_right_plus=294	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.49	new_junction_read_count=48	polymorphism_frequency=NA	pos_hash_score=32	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=45
JC	570	.	NC_000913	4499511	-1	NC_000913	4640414	-1	0	alignment_overlap=0	coverage_minus=65	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__4499511__-1__NC_000913__4640414__-1__0____300__300__1__0	max_left=296	max_left_minus=279	max_left_plus=296	max_min_left=149	max_min_left_minus=139	max_min_left_plus=149	max_min_right=140	max_min_right_minus=140	max_min_right_plus=138	max_pos_hash_score=586	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102
JC	571	.	NC_000913	4507459	1	NC_000913	4640418	1	0	alignment_overlap=1	coverage_minus=68	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__4507459__1__NC_000913__4640417__1__1____300__300__1__0	max_left=297	max_left_minus=288	max_left_plus=297	max_min_left=144	max_min_left_minus=140	max_min_left_plus=144	max_min_right=145	max_min_right_minus=140	max_min_right_plus=145	max_pos_hash_score=584	max_right=297	max_right_minus=287	max_right_plus=297	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.36	new_junction_read_count=132	polymorphism_frequency=1.000e+00	pos_hash_score=82	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=130
JC	572	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.596e-01	junction_possible_overlap_registers=204	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=154	max_left_minus=154	max_left_plus=140	max_min_left=105	max_min_left_minus=105	max_min_left_plus=77	max_min_right=94	max_min_right_minus=72	max_min_right_plus=94	max_pos_hash_score=408	max_right=204	max_right_minus=191	max_right_plus=204	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.16	new_junction_read_count=11	polymorphism_frequency=1.596e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=89	side_1_possible_overlap_registers=293	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=9
UN	573	.	NC_000913	15648	16497
UN	574	.	NC_000913	20071	20291
UN	575	.	NC_000913	224010	224514
UN	576	.	NC_000913	224516	224517
UN	577	.	NC_000913	225164	225325
UN	578	.	NC_000913	227270	228428
UN	579	.	NC_000913	257908	258683
UN	580	.	NC_000913	270795	271007
UN	581	.	NC_000913	271009	271009
UN	582	.	NC_000913	271011	271011
UN	583	.	NC_000913	271016	271016
UN	584	.	NC_000913	271020	271020
UN	585	.	NC_000913	274248	274869
UN	586	.	NC_000913	279430	291141
UN	587	.	NC_000913	315509	315509
UN	588	.	NC_000913	315512	316212
UN	589	.	NC_000913	316214	316215
UN	590	.	NC_000913	316218	316218
UN	591	.	NC_000913	381526	382343
UN	592	.	NC_000913	391984	392688
UN	593	.	NC_000913	526119	526119
UN	594	.	NC_000913	526122	526123
UN	595	.	NC_000913	526129	526130
UN	596	.	NC_000913	526133	526432
UN	597	.	NC_000913	567044	567044
UN	598	.	NC_000913	567046	567759
UN	599	.	NC_000913	567762	567763
UN	600	.	NC_000913	574869	575499
UN	601	.	NC_000913	575501	575503
UN	602	.	NC_000913	575506	575506
UN	603	.	NC_000913	608288	609073
UN	604	.	NC_000913	609078	609078
UN	605	.	NC_000913	678921	688780
UN	606	.	NC_000913	1094525	1095224
UN	607	.	NC_000913	1095228	1095229
UN	608	.	NC_000913	1196374	1211413
UN	609	.	NC_000913	1299499	1300697
UN	610	.	NC_000913	1396324	1396966
UN	611	.	NC_000913	1396968	1396971
UN	612	.	NC_000913	1396977	1396977
UN	613	.	NC_000913	1468176	1468960
UN	614	.	NC_000913	1468962	1468962
UN	615	.	NC_000913	1468965	1468965
UN	616	.	NC_000913	1469546	1470224
UN	617	.	NC_000913	1470226	1470227
UN	618	.	NC_000913	1528557	1528558
UN	619	.	NC_000913	1528561	1528562
UN	620	.	NC_000913	1528564	1528564
UN	621	.	NC_000913	1528567	1528886
UN	622	.	NC_000913	1651116	1651116
UN	623	.	NC_000913	1651121	1651270
UN	624	.	NC_000913	1651276	1651276
UN	625	.	NC_000913	1656172	1656203
UN	626	.	NC_000913	1656205	1656206
UN	627	.	NC_000913	1656210	1656210
UN	628	.	NC_000913	1656212	1656212
UN	629	.	NC_000913	1978495	1979270
UN	630	.	NC_000913	2067010	2067014
UN	631	.	NC_000913	2067019	2067049
UN	632	.	NC_000913	2069196	2070005
UN	633	.	NC_000913	2102002	2102657
UN	634	.	NC_000913	2170440	2171164
UN	635	.	NC_000913	2289208	2289833
UN	636	.	NC_000913	2514536	2515353
UN	637	.	NC_000913	2726341	2728977
UN	638	.	NC_000913	2728999	2728999
UN	639	.	NC_000913	2729817	2730693
UN	640	.	NC_000913	2730700	2730700
UN	641	.	NC_000913	2867280	2867287
UN	642	.	NC_000913	2996630	2997405
UN	643	.	NC_000913	2997420	2997421
UN	644	.	NC_000913	3130419	3131063
UN	645	.	NC_000913	3186382	3187160
UN	646	.	NC_000913	3365832	3365832
UN	647	.	NC_000913	3365836	3366474
UN	648	.	NC_000913	3423922	3424376
UN	649	.	NC_000913	3424924	3424925
UN	650	.	NC_000913	3424928	3426578
UN	651	.	NC_000913	3427210	3428278
UN	652	.	NC_000913	3428281	3428281
UN	653	.	NC_000913	3583710	3583911
UN	654	.	NC_000913	3619528	3620833
UN	655	.	NC_000913	3620855	3620855
UN	656	.	NC_000913	3621308	3621308
UN	657	.	NC_000913	3621310	3621318
UN	658	.	NC_000913	3621320	3621320
UN	659	.	NC_000913	3621322	3621323
UN	660	.	NC_000913	3621327	3622071
UN	661	.	NC_000913	3622073	3622074
UN	662	.	NC_000913	3652294	3652294
UN	663	.	NC_000913	3652297	3652950
UN	664	.	NC_000913	3708467	3708551
UN	665	.	NC_000913	3762520	3763807
UN	666	.	NC_000913	3764326	3765001
UN	667	.	NC_000913	3765004	3765004
UN	668	.	NC_000913	3765009	3765009
UN	669	.	NC_000913	3931455	3938491
UN	670	.	NC_000913	3941926	3943142
UN	671	.	NC_000913	3943144	3943144
UN	672	.	NC_000913	3943150	3943151
UN	673	.	NC_000913	3943157	3943157
UN	674	.	NC_000913	3943159	3943159
UN	675	.	NC_000913	3943858	3945306
UN	676	.	NC_000913	3945311	3945312
UN	677	.	NC_000913	3959446	3959500
UN	678	.	NC_000913	4035440	4035442
UN	679	.	NC_000913	4035445	4036820
UN	680	.	NC_000913	4036828	4036828
UN	681	.	NC_000913	4038100	4038100
UN	682	.	NC_000913	4038103	4038401
UN	683	.	NC_000913	4039012	4039013
UN	684	.	NC_000913	4039015	4039098
UN	685	.	NC_000913	4039670	4039670
UN	686	.	NC_000913	4039674	4040326
UN	687	.	NC_000913	4166935	4167968
UN	688	.	NC_000913	4168806	4171376
UN	689	.	NC_000913	4208390	4209487
UN	690	.	NC_000913	4210285	4212850
UN	691	.	NC_000913	4498460	4498460
UN	692	.	NC_000913	4498467	4498467
UN	693	.	NC_000913	4498470	4499233
UN	694	.	NC_000913	4507747	4508440
UN	695	.	NC_000913	4640415	4640417