#=GENOME_DIFF	1.0
#=CREATED	17:11:34 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8971_S26_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8971_S26_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8971_S26_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8971_S26_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8971_S26_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	433069444
#=CONVERTED-READS	1465389
#=INPUT-BASES	433153113
#=INPUT-READS	1465674
#=MAPPED-BASES	409549061
#=MAPPED-READS	1386639
SNP	1	92	NC_000913	246747	T
DEL	2	218,225	NC_000913	257908	776
SNP	3	93	NC_000913	284535	G
SNP	4	94	NC_000913	313543	A
SNP	5	96	NC_000913	339935	T
SNP	6	97	NC_000913	339941	T
SNP	7	98	NC_000913	339958	A
SNP	8	99	NC_000913	339979	A
SNP	9	100	NC_000913	339986	A
SNP	10	101	NC_000913	352466	T
SNP	11	102	NC_000913	393962	T
SUB	12	103,104	NC_000913	480295	2	AA
SNP	13	105	NC_000913	690948	A
SNP	14	106	NC_000913	700038	A
SUB	15	108,109	NC_000913	809217	2	AG
SNP	16	112	NC_000913	968837	A
SNP	17	114	NC_000913	1040126	T
SNP	18	115	NC_000913	1061935	A
SUB	19	116,117	NC_000913	1111727	2	TT
SNP	20	118	NC_000913	1169836	G
SNP	21	119	NC_000913	1189980	G
SNP	22	120	NC_000913	1196220	T
SNP	23	121	NC_000913	1196232	T
SNP	24	122	NC_000913	1196245	C
SNP	25	123	NC_000913	1196247	G
SNP	26	124	NC_000913	1196277	T
SNP	27	125	NC_000913	1196280	C
SNP	28	126	NC_000913	1196283	G
SNP	29	127	NC_000913	1196292	T
SNP	30	128	NC_000913	1196304	A
SNP	31	129	NC_000913	1196316	A
SNP	32	133	NC_000913	1301992	T
SNP	33	134	NC_000913	1306736	G
SNP	34	135	NC_000913	1310770	G
SNP	35	137	NC_000913	1337394	G
SNP	36	138	NC_000913	1357202	T
SNP	37	139	NC_000913	1358859	C
SNP	38	143	NC_000913	1643679	T
SNP	39	144	NC_000913	1652331	C
SNP	40	145	NC_000913	1721136	T
SNP	41	146	NC_000913	1776715	T
SNP	42	148	NC_000913	1894839	C
SNP	43	150	NC_000913	2040433	A
DEL	44	151,152	NC_000913	2173363	2
SNP	45	153	NC_000913	2188087	C
SNP	46	157	NC_000913	2384808	T
SNP	47	158	NC_000913	2410419	A
SNP	48	159	NC_000913	2484827	T
MOB	49	256,257	NC_000913	2913392	IS2	-1	5
SUB	50	167,168	NC_000913	3088010	2	TT
SUB	51	172,173	NC_000913	3336411	2	AT
SNP	52	174	NC_000913	3388041	G
SNP	53	175	NC_000913	3436697	A
INS	54	176	NC_000913	3560455	G
SNP	55	177	NC_000913	3682515	T
SNP	56	178	NC_000913	3707947	A
DEL	57	222,265	NC_000913	3708467	168
SNP	58	179	NC_000913	3725176	G
SNP	59	180	NC_000913	3771979	T
INS	60	182	NC_000913	3815883	C
INS	61	266	NC_000913	3822651	CAGGAT	repeat_length=6	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CAGGAT
SNP	62	183	NC_000913	3823162	T
SNP	63	184	NC_000913	3869637	A
SNP	64	185	NC_000913	3878536	A
SNP	65	187	NC_000913	3993531	C
SNP	66	188	NC_000913	3996049	A
SNP	67	189	NC_000913	4011802	T
SNP	68	190	NC_000913	4084903	G
SNP	69	191	NC_000913	4092703	G
SNP	70	192	NC_000913	4113851	A
SNP	71	193	NC_000913	4143377	T
SNP	72	194	NC_000913	4161248	T
SNP	73	195	NC_000913	4164123	G
SNP	74	196	NC_000913	4193996	G
SNP	75	197	NC_000913	4215347	A
SNP	76	198	NC_000913	4223638	C
INS	77	199	NC_000913	4282332	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
SUB	78	200,201	NC_000913	4293781	2	AT
INS	79	203,204	NC_000913	4296381	GC
SNP	80	205	NC_000913	4325644	T
SNP	81	206	NC_000913	4392997	A
SNP	82	207	NC_000913	4393552	A
SNP	83	208	NC_000913	4396373	T
SNP	84	209	NC_000913	4396772	C
SNP	85	210	NC_000913	4425688	A
SNP	86	211	NC_000913	4425696	A
SNP	87	213	NC_000913	4510238	G
SNP	88	214	NC_000913	4532409	G
SNP	89	215	NC_000913	4546601	T
SNP	90	216	NC_000913	4636925	C
SNP	91	217	NC_000913	4638240	A
RA	92	.	NC_000913	246747	0	G	T	consensus_score=375.2	frequency=1	major_base=T	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	93	.	NC_000913	284535	0	T	G	consensus_score=143.1	frequency=1	major_base=G	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	94	.	NC_000913	313543	0	G	A	consensus_score=350.9	frequency=1	major_base=A	major_cov=55/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/44
RA	95	.	NC_000913	320845	0	C	A	bias_e_value=4641.82	bias_p_value=0.00100004	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.2	fisher_strand_p_value=9.77231e-05	frequency=2.644e-01	ks_quality_p_value=1	major_base=C	major_cov=38/26	major_frequency=7.356e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.644e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=38/26	total_cov=61/26
RA	96	.	NC_000913	339935	0	C	T	consensus_score=101.5	frequency=1	major_base=T	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	97	.	NC_000913	339941	0	C	T	consensus_score=99.6	frequency=1	major_base=T	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	98	.	NC_000913	339958	0	G	A	consensus_score=97.6	frequency=1	major_base=A	major_cov=13/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/21
RA	99	.	NC_000913	339979	0	G	A	bias_e_value=2247580	bias_p_value=0.48422	consensus_score=82.0	fisher_strand_p_value=0.177419	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/13	major_frequency=8.286e-01	minor_base=G	minor_cov=1/5	new_cov=16/13	polymorphism_frequency=8.286e-01	polymorphism_score=3.4	prediction=consensus	ref_cov=1/5	total_cov=17/18
RA	100	.	NC_000913	339986	0	G	A	bias_e_value=2335750	bias_p_value=0.503216	consensus_score=88.1	fisher_strand_p_value=0.188604	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/15	major_frequency=8.378e-01	minor_base=G	minor_cov=1/5	new_cov=16/15	polymorphism_frequency=8.378e-01	polymorphism_score=10.0	prediction=consensus	ref_cov=1/5	total_cov=17/20
RA	101	.	NC_000913	352466	0	G	T	consensus_score=258.9	frequency=1	major_base=T	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	102	.	NC_000913	393962	0	C	T	consensus_score=282.4	frequency=1	major_base=T	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	103	.	NC_000913	480295	0	G	A	consensus_score=425.1	frequency=1	major_base=A	major_cov=64/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/55
RA	104	.	NC_000913	480296	0	G	A	consensus_score=432.5	frequency=1	major_base=A	major_cov=64/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/55
RA	105	.	NC_000913	690948	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=291.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/40	major_frequency=9.885e-01	minor_base=C	minor_cov=1/0	new_cov=46/40	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	106	.	NC_000913	700038	0	G	A	consensus_score=204.8	frequency=1	major_base=A	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	107	.	NC_000913	782194	0	T	G	bias_e_value=24574.9	bias_p_value=0.00529442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.8	fisher_strand_p_value=0.000632912	frequency=2.903e-01	ks_quality_p_value=1	major_base=T	major_cov=18/26	major_frequency=7.097e-01	minor_base=G	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.903e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=18/26	total_cov=18/44
RA	108	.	NC_000913	809217	0	C	A	consensus_score=216.8	frequency=1	major_base=A	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	109	.	NC_000913	809218	0	A	G	bias_e_value=3756620	bias_p_value=0.809328	consensus_score=226.1	fisher_strand_p_value=0.45	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=33/26	major_frequency=9.833e-01	minor_base=A	minor_cov=0/1	new_cov=33/26	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/27
RA	110	.	NC_000913	834674	0	C	A	bias_e_value=0.542484	bias_p_value=1.16873e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.8	fisher_strand_p_value=5.85662e-09	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=23/46	major_frequency=7.500e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.500e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=23/46	total_cov=46/46
RA	111	.	NC_000913	847955	0	G	A	bias_e_value=0.0357931	bias_p_value=7.71128e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.2	fisher_strand_p_value=3.381e-10	frequency=3.542e-01	ks_quality_p_value=1	major_base=G	major_cov=37/25	major_frequency=6.458e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.542e-01	polymorphism_score=43.4	prediction=polymorphism	ref_cov=37/25	total_cov=37/59
RA	112	.	NC_000913	968837	0	G	A	consensus_score=217.6	frequency=1	major_base=A	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	113	.	NC_000913	1015488	0	C	A	bias_e_value=0.170843	bias_p_value=3.68065e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=282.1	fisher_strand_p_value=1.7386e-09	frequency=2.378e-01	ks_quality_p_value=1	major_base=C	major_cov=52/57	major_frequency=7.622e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.378e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=52/57	total_cov=86/57
RA	114	.	NC_000913	1040126	0	G	T	bias_e_value=3921180	bias_p_value=0.84478	consensus_score=332.8	fisher_strand_p_value=0.497423	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/50	major_frequency=9.794e-01	minor_base=G	minor_cov=0/2	new_cov=45/50	polymorphism_frequency=9.794e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=45/52
RA	115	.	NC_000913	1061935	0	G	A	consensus_score=182.3	frequency=1	major_base=A	major_cov=34/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/22
RA	116	.	NC_000913	1111727	0	C	T	consensus_score=306.6	frequency=1	major_base=T	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	117	.	NC_000913	1111728	0	C	T	consensus_score=326.2	frequency=1	major_base=T	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	118	.	NC_000913	1169836	0	A	G	bias_e_value=4641580	bias_p_value=0.999984	consensus_score=289.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994402	major_base=G	major_cov=37/38	major_frequency=9.868e-01	minor_base=T	minor_cov=1/0	new_cov=37/38	polymorphism_frequency=9.868e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	119	.	NC_000913	1189980	0	A	G	consensus_score=254.0	frequency=1	major_base=G	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	120	.	NC_000913	1196220	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=177.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/33	major_frequency=9.836e-01	minor_base=C	minor_cov=0/1	new_cov=27/33	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=27/34
RA	121	.	NC_000913	1196232	0	C	T	consensus_score=158.0	frequency=1	major_base=T	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	122	.	NC_000913	1196245	0	T	C	consensus_score=146.8	frequency=1	major_base=C	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	123	.	NC_000913	1196247	0	A	G	consensus_score=146.9	frequency=1	major_base=G	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	124	.	NC_000913	1196277	0	C	T	consensus_score=123.1	frequency=1	major_base=T	major_cov=25/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/20
RA	125	.	NC_000913	1196280	0	G	C	consensus_score=121.5	frequency=1	major_base=C	major_cov=25/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/20
RA	126	.	NC_000913	1196283	0	A	G	consensus_score=129.1	frequency=1	major_base=G	major_cov=25/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/20
RA	127	.	NC_000913	1196292	0	C	T	consensus_score=121.5	frequency=1	major_base=T	major_cov=25/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/19
RA	128	.	NC_000913	1196304	0	G	A	consensus_score=109.1	frequency=1	major_base=A	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	129	.	NC_000913	1196316	0	T	A	consensus_score=84.7	frequency=1	major_base=A	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	130	.	NC_000913	1196325	0	A	G	consensus_score=65.5	deleted=1	frequency=1	major_base=G	major_cov=17/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	131	.	NC_000913	1196352	0	C	A	consensus_score=25.6	deleted=1	frequency=1	major_base=A	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	132	.	NC_000913	1272420	0	C	A	bias_e_value=240.48	bias_p_value=5.18091e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.2	fisher_strand_p_value=3.84675e-06	frequency=2.479e-01	ks_quality_p_value=1	major_base=C	major_cov=51/37	major_frequency=7.521e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.479e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=51/37	total_cov=80/37
RA	133	.	NC_000913	1301992	0	A	T	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=262.2	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/45	major_frequency=9.867e-01	minor_base=C	minor_cov=1/0	new_cov=29/45	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/45
RA	134	.	NC_000913	1306736	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=361.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=59/38	major_frequency=9.898e-01	minor_base=A	minor_cov=1/0	new_cov=59/38	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/38
RA	135	.	NC_000913	1310770	0	A	G	consensus_score=478.6	frequency=1	major_base=G	major_cov=70/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/54
RA	136	.	NC_000913	1334966	0	A	C	bias_e_value=0.024435	bias_p_value=5.26428e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.0	fisher_strand_p_value=2.26843e-10	frequency=2.448e-01	ks_quality_p_value=1	major_base=A	major_cov=49/59	major_frequency=7.552e-01	minor_base=C	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.448e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=49/59	total_cov=85/59
RA	137	.	NC_000913	1337394	0	A	G	bias_e_value=1937840	bias_p_value=0.41749	consensus_score=317.4	fisher_strand_p_value=0.141139	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=54/31	major_frequency=9.770e-01	minor_base=T	minor_cov=0/2	new_cov=54/31	polymorphism_frequency=9.770e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/33
RA	138	.	NC_000913	1357202	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=218.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/31	major_frequency=9.844e-01	minor_base=G	minor_cov=1/0	new_cov=32/31	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	139	.	NC_000913	1358859	0	T	C	consensus_score=365.6	frequency=1	major_base=C	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	140	.	NC_000913	1466438	0	T	G	bias_e_value=3125190	bias_p_value=0.673292	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.0	fisher_strand_p_value=0.310192	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=22/22	major_frequency=8.000e-01	minor_base=G	minor_cov=3/8	new_cov=3/8	polymorphism_frequency=2.000e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=22/22	total_cov=25/30
RA	141	.	NC_000913	1502770	0	T	C	bias_e_value=6.19284	bias_p_value=1.33419e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.7	fisher_strand_p_value=7.67539e-08	frequency=2.518e-01	ks_quality_p_value=1	major_base=T	major_cov=58/46	major_frequency=7.482e-01	minor_base=C	minor_cov=2/33	new_cov=2/33	polymorphism_frequency=2.518e-01	polymorphism_score=34.1	prediction=polymorphism	ref_cov=58/46	total_cov=60/79
RA	142	.	NC_000913	1502772	0	G	A	bias_e_value=6.02386e-05	bias_p_value=1.29778e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.4	fisher_strand_p_value=4.40666e-13	frequency=2.878e-01	ks_quality_p_value=1	major_base=G	major_cov=60/39	major_frequency=7.122e-01	minor_base=A	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=2.878e-01	polymorphism_score=41.0	prediction=polymorphism	ref_cov=60/39	total_cov=60/79
RA	143	.	NC_000913	1643679	0	A	T	consensus_score=317.4	frequency=1	major_base=T	major_cov=38/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/50
RA	144	.	NC_000913	1652331	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=549.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999606	major_base=C	major_cov=76/66	major_frequency=9.930e-01	minor_base=A	minor_cov=1/0	new_cov=76/66	polymorphism_frequency=9.930e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/66
RA	145	.	NC_000913	1721136	0	C	T	consensus_score=360.6	frequency=1	major_base=T	major_cov=41/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/64
RA	146	.	NC_000913	1776715	0	A	T	bias_e_value=3832750	bias_p_value=0.82573	consensus_score=364.5	fisher_strand_p_value=0.471154	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/55	major_frequency=9.904e-01	minor_base=G	minor_cov=1/0	new_cov=48/55	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	147	.	NC_000913	1812509	0	G	T	bias_e_value=1.1027e-06	bias_p_value=2.37567e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.0	fisher_strand_p_value=7.07416e-15	frequency=2.969e-01	ks_quality_p_value=1	major_base=G	major_cov=62/28	major_frequency=7.031e-01	minor_base=T	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.969e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=62/28	total_cov=62/66
RA	148	.	NC_000913	1894839	0	T	C	consensus_score=316.5	frequency=1	major_base=C	major_cov=51/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/33
RA	149	.	NC_000913	1922815	0	C	A	bias_e_value=21003.4	bias_p_value=0.00452498	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.5	fisher_strand_p_value=0.000529654	frequency=3.100e-01	ks_quality_p_value=1	major_base=C	major_cov=25/44	major_frequency=6.900e-01	minor_base=A	minor_cov=23/8	new_cov=23/8	polymorphism_frequency=3.100e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=25/44	total_cov=48/52
RA	150	.	NC_000913	2040433	0	C	A	consensus_score=275.3	frequency=1	major_base=A	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	151	.	NC_000913	2173363	0	C	.	bias_e_value=4623100	bias_p_value=0.996003	consensus_score=411.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.911936	major_base=.	major_cov=50/38	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=50/38	polymorphism_frequency=9.888e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/0	total_cov=51/38
RA	152	.	NC_000913	2173364	0	C	.	bias_e_value=4623100	bias_p_value=0.996003	consensus_score=411.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.911936	major_base=.	major_cov=50/38	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=50/38	polymorphism_frequency=9.888e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/0	total_cov=51/38
RA	153	.	NC_000913	2188087	0	T	C	consensus_score=485.9	frequency=1	major_base=C	major_cov=72/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/56
RA	154	.	NC_000913	2288418	0	G	T	bias_e_value=1.89918e-05	bias_p_value=4.09161e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.3	fisher_strand_p_value=1.33518e-13	frequency=3.139e-01	ks_quality_p_value=1	major_base=G	major_cov=57/37	major_frequency=6.861e-01	minor_base=T	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=3.139e-01	polymorphism_score=25.6	prediction=polymorphism	ref_cov=57/37	total_cov=57/80
RA	155	.	NC_000913	2326713	0	C	A	bias_e_value=0.000681117	bias_p_value=1.4674e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.6	fisher_strand_p_value=5.44777e-12	frequency=3.048e-01	ks_quality_p_value=1	major_base=C	major_cov=24/49	major_frequency=6.952e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.048e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=24/49	total_cov=56/49
RA	156	.	NC_000913	2365840	0	T	G	bias_e_value=6.59165	bias_p_value=1.42011e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.2	fisher_strand_p_value=8.20093e-08	frequency=2.463e-01	ks_quality_p_value=1	major_base=T	major_cov=47/54	major_frequency=7.537e-01	minor_base=G	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.463e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=47/54	total_cov=47/87
RA	157	.	NC_000913	2384808	0	C	T	consensus_score=361.0	frequency=1	major_base=T	major_cov=54/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	158	.	NC_000913	2410419	0	G	A	consensus_score=219.8	frequency=1	major_base=A	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	159	.	NC_000913	2484827	0	C	T	consensus_score=397.3	frequency=1	major_base=T	major_cov=55/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	160	.	NC_000913	2818324	0	G	A	bias_e_value=4113960	bias_p_value=0.886314	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.6	fisher_strand_p_value=0.589071	frequency=2.923e-01	ks_quality_p_value=0.955399	major_base=G	major_cov=21/25	major_frequency=7.077e-01	minor_base=A	minor_cov=7/12	new_cov=7/12	polymorphism_frequency=2.923e-01	polymorphism_score=46.6	prediction=polymorphism	ref_cov=21/25	total_cov=28/37
RA	161	.	NC_000913	2818331	0	G	T	bias_e_value=4504930	bias_p_value=0.970544	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.0	fisher_strand_p_value=0.767315	frequency=2.308e-01	ks_quality_p_value=1	major_base=G	major_cov=20/30	major_frequency=7.692e-01	minor_base=T	minor_cov=7/8	new_cov=7/8	polymorphism_frequency=2.308e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=20/30	total_cov=27/38
RA	162	.	NC_000913	2913471	0	C	A	bias_e_value=1820370	bias_p_value=0.392182	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.0	fisher_strand_p_value=0.128511	frequency=2.174e-01	ks_quality_p_value=1	major_base=C	major_cov=37/35	major_frequency=7.826e-01	minor_base=A	minor_cov=6/14	new_cov=6/14	polymorphism_frequency=2.174e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=37/35	total_cov=43/49
RA	163	.	NC_000913	2990480	0	C	A	bias_e_value=0.0233524	bias_p_value=5.03106e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.8	fisher_strand_p_value=2.16351e-10	frequency=3.228e-01	ks_quality_p_value=1	major_base=C	major_cov=41/45	major_frequency=6.772e-01	minor_base=A	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=3.228e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=41/45	total_cov=82/45
RA	164	.	NC_000913	3032307	0	C	T	bias_e_value=7.49421	bias_p_value=1.61456e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.4	fisher_strand_p_value=9.39776e-08	frequency=2.118e-01	ks_quality_p_value=1	major_base=C	major_cov=22/45	major_frequency=7.882e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.118e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=22/45	total_cov=40/45
RA	165	.	NC_000913	3054886	0	G	T	bias_e_value=38.7674	bias_p_value=8.35206e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.6	fisher_strand_p_value=5.41313e-07	frequency=2.111e-01	ks_quality_p_value=1	major_base=G	major_cov=28/43	major_frequency=7.889e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.111e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=28/43	total_cov=47/43
RA	166	.	NC_000913	3054894	0	G	T	bias_e_value=0.335975	bias_p_value=7.23827e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.0	fisher_strand_p_value=3.53781e-09	frequency=2.651e-01	ks_quality_p_value=1	major_base=G	major_cov=19/42	major_frequency=7.349e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.651e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=19/42	total_cov=41/42
RA	167	.	NC_000913	3088010	0	C	T	bias_e_value=1385400	bias_p_value=0.298471	consensus_score=376.1	fisher_strand_p_value=0.0866034	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/48	major_frequency=9.737e-01	minor_base=G	minor_cov=0/3	new_cov=63/48	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=64/51
RA	168	.	NC_000913	3088011	0	C	T	consensus_score=382.9	frequency=1	major_base=T	major_cov=62/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/51
RA	169	.	NC_000913	3181552	0	C	A	bias_e_value=0.264571	bias_p_value=5.69993e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.1	fisher_strand_p_value=2.75214e-09	frequency=2.449e-01	ks_quality_p_value=1	major_base=C	major_cov=25/49	major_frequency=7.551e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.449e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=25/49	total_cov=49/50
RA	170	.	NC_000913	3191376	0	G	T	bias_e_value=1.06918	bias_p_value=2.30345e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=261.8	fisher_strand_p_value=1.19717e-08	frequency=2.426e-01	ks_quality_p_value=1	major_base=G	major_cov=51/52	major_frequency=7.574e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.426e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=51/52	total_cov=51/85
RA	171	.	NC_000913	3269948	0	T	C	bias_e_value=0.477462	bias_p_value=1.02865e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.5	fisher_strand_p_value=5.12018e-09	frequency=2.653e-01	ks_quality_p_value=1	major_base=T	major_cov=28/44	major_frequency=7.347e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.653e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=28/44	total_cov=54/44
RA	172	.	NC_000913	3336411	0	G	A	consensus_score=332.9	frequency=1	major_base=A	major_cov=54/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/41
RA	173	.	NC_000913	3336412	0	A	T	consensus_score=351.4	frequency=1	major_base=T	major_cov=54/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/41
RA	174	.	NC_000913	3388041	0	T	G	consensus_score=308.6	frequency=1	major_base=G	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	175	.	NC_000913	3436697	0	G	A	consensus_score=269.5	frequency=1	major_base=A	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	176	.	NC_000913	3560455	1	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=340.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=34/56	major_frequency=9.890e-01	minor_base=A	minor_cov=0/1	new_cov=34/56	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/57
RA	177	.	NC_000913	3682515	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=289.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/44	major_frequency=9.881e-01	minor_base=G	minor_cov=0/1	new_cov=39/44	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=39/46
RA	178	.	NC_000913	3707947	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=404.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=81/36	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=81/36	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=82/36
RA	179	.	NC_000913	3725176	0	T	G	bias_e_value=3811480	bias_p_value=0.821148	consensus_score=311.6	fisher_strand_p_value=0.465116	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=46/39	major_frequency=9.884e-01	minor_base=A	minor_cov=0/1	new_cov=46/39	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/40
RA	180	.	NC_000913	3771979	0	G	T	consensus_score=387.6	frequency=1	major_base=T	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	181	.	NC_000913	3789274	0	C	A	bias_e_value=87.8655	bias_p_value=1.89298e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.8	fisher_strand_p_value=1.30079e-06	frequency=2.269e-01	ks_quality_p_value=1	major_base=C	major_cov=49/43	major_frequency=7.731e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.269e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=49/43	total_cov=76/43
RA	182	.	NC_000913	3815883	1	.	C	bias_e_value=4163820	bias_p_value=0.897056	consensus_score=332.3	fisher_strand_p_value=0.582051	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=37/48	major_frequency=9.659e-01	minor_base=.	minor_cov=2/1	new_cov=37/48	polymorphism_frequency=9.659e-01	polymorphism_score=3.6	prediction=consensus	ref_cov=2/1	total_cov=41/49
RA	183	.	NC_000913	3823162	0	C	T	bias_e_value=4635370	bias_p_value=0.998648	consensus_score=331.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.948446	major_base=T	major_cov=35/69	major_frequency=9.905e-01	minor_base=C	minor_cov=0/1	new_cov=35/69	polymorphism_frequency=9.905e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=35/70
RA	184	.	NC_000913	3869637	0	C	A	consensus_score=329.5	frequency=1	major_base=A	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	185	.	NC_000913	3878536	0	G	A	consensus_score=172.7	frequency=1	major_base=A	major_cov=19/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/30
RA	186	.	NC_000913	3911533	0	C	A	bias_e_value=0.000357706	bias_p_value=7.70644e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.5	fisher_strand_p_value=2.79175e-12	frequency=3.058e-01	ks_quality_p_value=1	major_base=C	major_cov=32/52	major_frequency=6.942e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.058e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=32/52	total_cov=69/52
RA	187	.	NC_000913	3993531	0	T	C	consensus_score=320.1	frequency=1	major_base=C	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	188	.	NC_000913	3996049	0	T	A	consensus_score=253.1	frequency=1	major_base=A	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	189	.	NC_000913	4011802	0	C	T	consensus_score=171.6	frequency=1	major_base=T	major_cov=12/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/41
RA	190	.	NC_000913	4084903	0	T	G	bias_e_value=1735260	bias_p_value=0.373846	consensus_score=245.5	fisher_strand_p_value=0.119724	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=33/35	major_frequency=9.444e-01	minor_base=T	minor_cov=0/4	new_cov=33/35	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/4	total_cov=33/39
RA	191	.	NC_000913	4092703	0	A	G	consensus_score=377.0	frequency=1	major_base=G	major_cov=52/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/49
RA	192	.	NC_000913	4113851	0	G	A	consensus_score=286.9	frequency=1	major_base=A	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	193	.	NC_000913	4143377	0	C	T	bias_e_value=3644910	bias_p_value=0.785262	consensus_score=195.8	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/23	major_frequency=9.825e-01	minor_base=G	minor_cov=0/1	new_cov=33/23	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	194	.	NC_000913	4161248	0	G	T	consensus_score=284.7	frequency=1	major_base=T	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	195	.	NC_000913	4164123	0	C	G	bias_e_value=3766340	bias_p_value=0.811422	consensus_score=345.4	fisher_strand_p_value=0.452632	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=52/42	major_frequency=9.895e-01	minor_base=T	minor_cov=0/1	new_cov=52/42	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/43
RA	196	.	NC_000913	4193996	0	T	G	consensus_score=214.4	frequency=1	major_base=G	major_cov=22/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/36
RA	197	.	NC_000913	4215347	0	T	A	bias_e_value=3695840	bias_p_value=0.796233	consensus_score=371.2	fisher_strand_p_value=0.433962	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/60	major_frequency=9.906e-01	minor_base=C	minor_cov=1/0	new_cov=45/60	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/60
RA	198	.	NC_000913	4223638	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=397.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=53/54	major_frequency=9.640e-01	minor_base=A	minor_cov=2/2	new_cov=53/54	polymorphism_frequency=9.640e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=55/56
RA	199	.	NC_000913	4282332	1	.	A	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=363.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997804	major_base=A	major_cov=57/46	major_frequency=9.717e-01	minor_base=.	minor_cov=2/1	new_cov=57/46	polymorphism_frequency=9.717e-01	polymorphism_score=4.0	prediction=consensus	ref_cov=2/1	total_cov=60/47
RA	200	.	NC_000913	4293781	0	G	A	consensus_score=297.1	frequency=1	major_base=A	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	201	.	NC_000913	4293782	0	C	T	consensus_score=276.5	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	202	.	NC_000913	4296268	0	T	C	bias_e_value=4444070	bias_p_value=0.957434	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.0	fisher_strand_p_value=1	frequency=2.333e-01	ks_quality_p_value=0.722789	major_base=T	major_cov=17/6	major_frequency=7.667e-01	minor_base=C	minor_cov=6/1	new_cov=6/1	polymorphism_frequency=2.333e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=17/6	total_cov=23/7
RA	203	.	NC_000913	4296380	1	.	C	bias_e_value=4641640	bias_p_value=0.999996	consensus_score=167.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997355	major_base=C	major_cov=42/11	major_frequency=9.298e-01	minor_base=T	minor_cov=3/1	new_cov=42/11	polymorphism_frequency=9.298e-01	polymorphism_score=3.7	prediction=consensus	ref_cov=1/0	total_cov=46/12
RA	204	.	NC_000913	4296380	2	.	G	bias_e_value=4633490	bias_p_value=0.998242	consensus_score=189.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.941297	major_base=G	major_cov=45/12	major_frequency=9.828e-01	minor_base=.	minor_cov=1/0	new_cov=45/12	polymorphism_frequency=9.828e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/0	total_cov=46/12
RA	205	.	NC_000913	4325644	0	C	T	consensus_score=248.3	frequency=1	major_base=T	major_cov=29/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/49
RA	206	.	NC_000913	4392997	0	G	A	consensus_score=368.4	frequency=1	major_base=A	major_cov=40/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/62
RA	207	.	NC_000913	4393552	0	G	A	consensus_score=314.5	frequency=1	major_base=A	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	208	.	NC_000913	4396373	0	C	T	consensus_score=255.7	frequency=1	major_base=T	major_cov=30/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/43
RA	209	.	NC_000913	4396772	0	T	C	consensus_score=218.8	frequency=1	major_base=C	major_cov=34/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	210	.	NC_000913	4425688	0	C	A	bias_e_value=3808530	bias_p_value=0.820511	consensus_score=300.0	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=38/45	major_frequency=9.881e-01	minor_base=C	minor_cov=1/0	new_cov=38/45	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/45
RA	211	.	NC_000913	4425696	0	C	A	consensus_score=290.4	frequency=1	major_base=A	major_cov=39/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/45
RA	212	.	NC_000913	4427822	0	C	A	bias_e_value=0.00309664	bias_p_value=6.67142e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.2	fisher_strand_p_value=2.63056e-11	frequency=2.869e-01	ks_quality_p_value=1	major_base=C	major_cov=35/52	major_frequency=7.131e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.869e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=35/52	total_cov=70/52
RA	213	.	NC_000913	4510238	0	T	G	bias_e_value=1180680	bias_p_value=0.254367	consensus_score=438.8	fisher_strand_p_value=0.0693314	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=76/51	major_frequency=9.769e-01	minor_base=T	minor_cov=0/3	new_cov=76/51	polymorphism_frequency=9.769e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=76/54
RA	214	.	NC_000913	4532409	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=276.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/39	major_frequency=9.872e-01	minor_base=A	minor_cov=1/0	new_cov=38/39	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	215	.	NC_000913	4546601	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=440.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/72	major_frequency=9.926e-01	minor_base=G	minor_cov=0/1	new_cov=63/72	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/73
RA	216	.	NC_000913	4636925	0	G	C	bias_e_value=3679280	bias_p_value=0.792666	consensus_score=253.3	fisher_strand_p_value=0.432836	frequency=1	ks_quality_p_value=0.99279	major_base=C	major_cov=38/28	major_frequency=9.851e-01	minor_base=A	minor_cov=0/1	new_cov=38/28	polymorphism_frequency=9.851e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	217	.	NC_000913	4638240	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=342.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/46	major_frequency=9.895e-01	minor_base=C	minor_cov=1/0	new_cov=48/46	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/46
MC	218	.	NC_000913	257908	258683	768	0	left_inside_cov=0	left_outside_cov=100	right_inside_cov=2	right_outside_cov=102
MC	219	.	NC_000913	1196325	1211460	0	0	left_inside_cov=27	left_outside_cov=30	right_inside_cov=27	right_outside_cov=35
MC	220	.	NC_000913	1978495	1979270	0	767	left_inside_cov=0	left_outside_cov=100	right_inside_cov=1	right_outside_cov=133
MC	221	.	NC_000913	3423885	3424461	347	223	left_inside_cov=26	left_outside_cov=28	right_inside_cov=27	right_outside_cov=28
MC	222	.	NC_000913	3708467	3708634	0	0	left_inside_cov=0	left_outside_cov=40	right_inside_cov=22	right_outside_cov=62
JC	223	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=67	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=294	max_left_minus=294	max_left_plus=275	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=145	max_min_right_minus=145	max_min_right_plus=134	max_pos_hash_score=590	max_right=299	max_right_minus=287	max_right_plus=299	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.29	new_junction_read_count=114	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=109
JC	224	.	NC_000913	177240	-1	NC_000913	177502	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.577e-02	junction_possible_overlap_registers=284	key=NC_000913__177240__-1__NC_000913__177492__1__10____300__300__0__0	max_left=201	max_left_minus=201	max_left_plus=157	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=133	max_min_right_minus=88	max_min_right_plus=133	max_pos_hash_score=570	max_right=133	max_right_minus=88	max_right_plus=133	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.577e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=3
JC	225	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=45	coverage_plus=54	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=287	max_min_left=137	max_min_left_minus=117	max_min_left_plus=137	max_min_right=145	max_min_right_minus=145	max_min_right_plus=144	max_pos_hash_score=574	max_right=279	max_right_minus=279	max_right_plus=266	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	226	.	NC_000913	257908	1	NC_000913	348680	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=6.667e-02	junction_possible_overlap_registers=294	key=NC_000913__257908__1__NC_000913__348680__-1__0____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=0	max_min_left=149	max_min_left_minus=149	max_min_left_plus=0	max_min_right=84	max_min_right_minus=84	max_min_right_plus=0	max_pos_hash_score=590	max_right=289	max_right_minus=289	max_right_plus=0	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.667e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=5
JC	227	.	NC_000913	258675	-1	NC_000913	348672	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.299e-01	junction_possible_overlap_registers=294	key=NC_000913__258675__-1__NC_000913__348672__1__0____300__300__1__0	max_left=277	max_left_minus=263	max_left_plus=277	max_min_left=115	max_min_left_minus=115	max_min_left_plus=89	max_min_right=108	max_min_right_minus=108	max_min_right_plus=84	max_pos_hash_score=590	max_right=285	max_right_minus=285	max_right_plus=241	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.299e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=10
JC	228	.	NC_000913	270541	1	NC_000913	346942	1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=14	flanking_left=300	flanking_right=300	frequency=4.023e-01	junction_possible_overlap_registers=294	key=NC_000913__270541__1__NC_000913__346942__1__0____300__300__1__0	max_left=285	max_left_minus=285	max_left_plus=274	max_min_left=140	max_min_left_minus=129	max_min_left_plus=140	max_min_right=117	max_min_right_minus=117	max_min_right_plus=82	max_pos_hash_score=590	max_right=229	max_right_minus=217	max_right_plus=229	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.40	new_junction_read_count=35	polymorphism_frequency=4.023e-01	pos_hash_score=25	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=34
JC	229	.	NC_000913	275149	-1	NC_000913	384791	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.082e-02	junction_possible_overlap_registers=294	key=NC_000913__275149__-1__NC_000913__384791__1__0____300__300__1__0	max_left=282	max_left_minus=282	max_left_plus=125	max_min_left=125	max_min_left_minus=109	max_min_left_plus=125	max_min_right=141	max_min_right_minus=141	max_min_right_plus=0	max_pos_hash_score=590	max_right=190	max_right_minus=190	max_right_plus=175	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=4.082e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.59	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=141	side_2_redundant=0	total_non_overlap_reads=6
JC	230	.	NC_000913	279930	-1	NC_000913	2867349	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.188e-02	junction_possible_overlap_registers=292	key=NC_000913__279932__-1__NC_000913__2867349__1__2____300__300__1__0	max_left=87	max_left_minus=87	max_left_plus=87	max_min_left=87	max_min_left_minus=87	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=280	max_right_minus=219	max_right_plus=280	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=7.188e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=2	side_2_possible_overlap_registers=294	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=5
JC	231	.	NC_000913	290634	1	NC_000913	348680	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=4.110e-02	junction_possible_overlap_registers=294	key=NC_000913__290634__1__NC_000913__348680__-1__0____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=0	max_min_left=64	max_min_left_minus=64	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_pos_hash_score=590	max_right=289	max_right_minus=289	max_right_plus=0	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.110e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=3
JC	232	.	NC_000913	291401	-1	NC_000913	348672	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.634e-02	junction_possible_overlap_registers=294	key=NC_000913__291401__-1__NC_000913__348672__1__0____300__300__1__0	max_left=115	max_left_minus=115	max_left_plus=89	max_min_left=115	max_min_left_minus=115	max_min_left_plus=89	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=285	max_right_minus=285	max_right_plus=241	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.634e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=4
JC	233	.	NC_000913	346901	-1	NC_000913	2102943	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=9.039e-02	junction_possible_overlap_registers=291	key=NC_000913__346901__-1__NC_000913__2102946__-1__3____300__300__0__1	max_left=272	max_left_minus=272	max_left_plus=238	max_min_left=25	max_min_left_minus=0	max_min_left_plus=25	max_min_right=81	max_min_right_minus=25	max_min_right_plus=81	max_pos_hash_score=584	max_right=282	max_right_minus=25	max_right_plus=282	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=9.039e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=3	side_1_possible_overlap_registers=294	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	234	.	NC_000913	346943	-1	NC_000913	4507459	1	0	alignment_overlap=2	coverage_minus=22	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=5.048e-01	junction_possible_overlap_registers=292	key=NC_000913__346945__-1__NC_000913__4507459__1__2____300__300__0__1	max_left=293	max_left_minus=256	max_left_plus=293	max_min_left=145	max_min_left_minus=139	max_min_left_plus=145	max_min_right=124	max_min_right_minus=124	max_min_right_plus=116	max_pos_hash_score=586	max_right=282	max_right_minus=198	max_right_plus=282	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.60	new_junction_read_count=53	polymorphism_frequency=5.048e-01	pos_hash_score=33	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=52
JC	235	.	NC_000913	347190	-1	NC_000913	347201	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=5.780e-02	junction_possible_overlap_registers=294	key=NC_000913__347190__-1__NC_000913__347201__1__0____300__300__0__0	max_left=232	max_left_minus=232	max_left_plus=0	max_min_left=113	max_min_left_minus=113	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=590	max_right=266	max_right_minus=266	max_right_plus=0	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.780e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=5
JC	236	.	NC_000913	473596	-1	NC_000913	474059	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.368e-02	junction_possible_overlap_registers=282	key=NC_000913__473596__-1__NC_000913__474047__1__12____300__300__0__0	max_left=150	max_left_minus=150	max_left_plus=76	max_min_left=103	max_min_left_minus=103	max_min_left_plus=76	max_min_right=39	max_min_right_minus=39	max_min_right_plus=0	max_pos_hash_score=566	max_right=120	max_right_minus=120	max_right_plus=120	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.368e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=4
JC	237	.	NC_000913	696506	-1	NC_000913	697057	1	-45	alignment_overlap=-45	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.497e-01	junction_possible_overlap_registers=249	key=NC_000913__696506__-1__NC_000913__697057__1__-45__AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT__300__300__0__0	max_left=231	max_left_minus=71	max_left_plus=231	max_min_left=71	max_min_left_minus=71	max_min_left_plus=62	max_min_right=24	max_min_right_minus=0	max_min_right_plus=24	max_pos_hash_score=500	max_right=124	max_right_minus=124	max_right_plus=124	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.16	new_junction_read_count=12	polymorphism_frequency=1.497e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=10	unique_read_sequence=AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT
JC	238	.	NC_000913	696567	-1	NC_000913	696690	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.922e-02	junction_possible_overlap_registers=282	key=NC_000913__696567__-1__NC_000913__696678__1__12____300__300__0__0	max_left=207	max_left_minus=48	max_left_plus=207	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=81	max_min_right_minus=34	max_min_right_plus=81	max_pos_hash_score=566	max_right=81	max_right_minus=34	max_right_plus=81	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.922e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=3
JC	239	.	NC_000913	732239	-1	NC_000913	732420	1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=7.385e-02	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__732408__1__12____300__300__0__0	max_left=260	max_left_minus=260	max_left_plus=0	max_min_left=139	max_min_left_minus=139	max_min_left_plus=0	max_min_right=25	max_min_right_minus=25	max_min_right_plus=0	max_pos_hash_score=566	max_right=177	max_right_minus=177	max_right_plus=0	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=7.385e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.49	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.40	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=3
JC	240	.	NC_000913	781016	-1	NC_000913	781809	1	0	alignment_overlap=37	coverage_minus=5	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=8.769e-02	junction_possible_overlap_registers=257	key=NC_000913__781016__-1__NC_000913__781772__1__37____300__300__0__0	max_left=258	max_left_minus=258	max_left_plus=12	max_min_left=28	max_min_left_minus=28	max_min_left_plus=0	max_min_right=6	max_min_right_minus=2	max_min_right_plus=6	max_pos_hash_score=516	max_right=233	max_right_minus=233	max_right_plus=6	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=8.769e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.46	side_1_overlap=37	side_1_possible_overlap_registers=294	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=257	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=6
JC	241	.	NC_000913	781322	-1	NC_000913	781811	1	0	alignment_overlap=39	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.605e-02	junction_possible_overlap_registers=255	key=NC_000913__781322__-1__NC_000913__781772__1__39____300__300__0__0	max_left=125	max_left_minus=125	max_left_plus=84	max_min_left=84	max_min_left_minus=45	max_min_left_plus=84	max_min_right=20	max_min_right_minus=20	max_min_right_plus=4	max_pos_hash_score=512	max_right=96	max_right_minus=82	max_right_plus=96	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=9.605e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=39	side_1_possible_overlap_registers=294	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=255	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=8
JC	242	.	NC_000913	781635	1	NC_000913	2521328	-1	-80	alignment_overlap=-80	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.523e-02	junction_possible_overlap_registers=214	key=NC_000913__781635__1__NC_000913__2521328__-1__-80__GACTCGCTTCGCTCGCCCTACGGGCCGTTGCTGGCGCAACGTTATCCTTCACGCTTAACATCTGAGTTTGATGTTAAAAC__300__300__0__0	max_left=94	max_left_minus=94	max_left_plus=68	max_min_left=94	max_min_left_minus=94	max_min_left_plus=68	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=430	max_right=152	max_right_minus=124	max_right_plus=152	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.05	new_junction_read_count=3	polymorphism_frequency=5.523e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=GACTCGCTTCGCTCGCCCTACGGGCCGTTGCTGGCGCAACGTTATCCTTCACGCTTAACATCTGAGTTTGATGTTAAAAC
JC	243	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.482e-01	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=258	max_left_minus=258	max_left_plus=231	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=49	max_min_right_minus=36	max_min_right_plus=49	max_pos_hash_score=550	max_right=271	max_right_minus=36	max_right_plus=271	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.11	new_junction_read_count=9	polymorphism_frequency=1.482e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=9
JC	244	.	NC_000913	1287329	-1	NC_000913	1287624	1	0	alignment_overlap=87	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=2.120e-01	junction_possible_overlap_registers=207	key=NC_000913__1287329__-1__NC_000913__1287537__1__87____300__300__0__0	max_left=202	max_left_minus=160	max_left_plus=202	max_min_left=92	max_min_left_minus=92	max_min_left_plus=25	max_min_right=11	max_min_right_minus=7	max_min_right_plus=11	max_pos_hash_score=416	max_right=204	max_right_minus=191	max_right_plus=204	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.14	new_junction_read_count=9	polymorphism_frequency=2.120e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=87	side_1_possible_overlap_registers=294	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=8
JC	245	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=59	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=293	max_left_plus=294	max_min_left=146	max_min_left_minus=145	max_min_left_plus=146	max_min_right=140	max_min_right_minus=133	max_min_right_plus=140	max_pos_hash_score=582	max_right=286	max_right_minus=283	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.37	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=118
JC	246	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=294	max_left_minus=286	max_left_plus=294	max_min_left=142	max_min_left_minus=139	max_min_left_plus=142	max_min_right=149	max_min_right_minus=138	max_min_right_plus=149	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=268	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=95
JC	247	.	NC_000913	1411899	1	NC_000913	1434958	-1	0	alignment_overlap=26	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.157e-02	junction_possible_overlap_registers=268	key=NC_000913__1411899__1__NC_000913__1434984__-1__26____300__300__0__0	max_left=195	max_left_minus=172	max_left_plus=195	max_min_left=114	max_min_left_minus=114	max_min_left_plus=58	max_min_right=107	max_min_right_minus=102	max_min_right_plus=107	max_pos_hash_score=538	max_right=213	max_right_minus=160	max_right_plus=213	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.157e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=26	side_1_possible_overlap_registers=294	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.65	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=5
JC	248	.	NC_000913	1978503	1	NC_000913	2867356	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.370e-01	junction_possible_overlap_registers=294	key=NC_000913__1978503__1__NC_000913__2867356__-1__0____300__300__1__0	max_left=276	max_left_minus=276	max_left_plus=236	max_min_left=149	max_min_left_minus=139	max_min_left_plus=149	max_min_right=94	max_min_right_minus=94	max_min_right_plus=65	max_pos_hash_score=590	max_right=167	max_right_minus=167	max_right_plus=151	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.370e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=10
JC	249	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=54	coverage_plus=74	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=294	max_left_minus=288	max_left_plus=294	max_min_left=140	max_min_left_minus=140	max_min_left_plus=140	max_min_right=150	max_min_right_minus=145	max_min_right_plus=150	max_pos_hash_score=590	max_right=299	max_right_minus=299	max_right_plus=292	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.49	new_junction_read_count=132	polymorphism_frequency=9.925e-01	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=128
JC	250	.	NC_000913	2236545	-1	NC_000913	2236662	1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.910e-02	junction_possible_overlap_registers=282	key=NC_000913__2236545__-1__NC_000913__2236650__1__12____300__300__0__0	max_left=112	max_left_minus=112	max_left_plus=88	max_min_left=112	max_min_left_minus=112	max_min_left_plus=88	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=566	max_right=183	max_right_minus=176	max_right_plus=183	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=6.910e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=6
JC	251	.	NC_000913	2357730	-1	NC_000913	2357926	1	0	alignment_overlap=40	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.343e-02	junction_possible_overlap_registers=254	key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0	max_left=246	max_left_minus=246	max_left_plus=214	max_min_left=55	max_min_left_minus=0	max_min_left_plus=55	max_min_right=93	max_min_right_minus=44	max_min_right_plus=93	max_pos_hash_score=510	max_right=93	max_right_minus=44	max_right_plus=93	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=6.343e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=40	side_1_possible_overlap_registers=294	side_1_read_count=109	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=6
JC	252	.	NC_000913	2518116	-1	NC_000913	2518232	1	0	alignment_overlap=81	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.376e-02	junction_possible_overlap_registers=213	key=NC_000913__2518116__-1__NC_000913__2518151__1__81____300__300__0__0	max_left=157	max_left_minus=157	max_left_plus=1	max_min_left=69	max_min_left_minus=69	max_min_left_plus=1	max_min_right=62	max_min_right_minus=62	max_min_right_plus=0	max_pos_hash_score=428	max_right=158	max_right_minus=158	max_right_plus=89	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=6.376e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=81	side_1_possible_overlap_registers=294	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=4
JC	253	.	NC_000913	2653393	-1	NC_000913	2653720	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.846e-02	junction_possible_overlap_registers=291	key=NC_000913__2653393__-1__NC_000913__2653717__1__3____300__300__0__0	max_left=164	max_left_minus=164	max_left_plus=164	max_min_left=58	max_min_left_minus=58	max_min_left_plus=58	max_min_right=111	max_min_right_minus=111	max_min_right_plus=111	max_pos_hash_score=584	max_right=235	max_right_minus=235	max_right_plus=235	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.846e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=3	side_1_possible_overlap_registers=294	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=4
JC	254	.	NC_000913	2818275	-1	NC_000913	2818551	1	0	alignment_overlap=79	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.290e-01	junction_possible_overlap_registers=215	key=NC_000913__2818275__-1__NC_000913__2818472__1__79____300__300__0__0	max_left=128	max_left_minus=128	max_left_plus=128	max_min_left=109	max_min_left_minus=109	max_min_left_plus=12	max_min_right=79	max_min_right_minus=79	max_min_right_plus=79	max_pos_hash_score=432	max_right=209	max_right_minus=133	max_right_plus=209	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.11	new_junction_read_count=7	polymorphism_frequency=1.290e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=79	side_1_possible_overlap_registers=294	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=7
JC	255	.	NC_000913	2867349	1	NC_000913	3583428	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.333e-01	junction_possible_overlap_registers=294	key=NC_000913__2867349__1__NC_000913__3583428__1__0____300__300__0__1	max_left=282	max_left_minus=282	max_left_plus=221	max_min_left=59	max_min_left_minus=58	max_min_left_plus=59	max_min_right=87	max_min_right_minus=87	max_min_right_plus=87	max_pos_hash_score=590	max_right=273	max_right_minus=273	max_right_plus=241	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.333e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10
JC	256	.	NC_000913	2913392	1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=45	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1	max_left=295	max_left_minus=285	max_left_plus=295	max_min_left=144	max_min_left_minus=144	max_min_left_plus=141	max_min_right=147	max_min_right_minus=146	max_min_right_plus=147	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=296	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.19	new_junction_read_count=105	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=97
JC	257	.	NC_000913	2913396	-1	NC_000913	2996361	1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1	max_left=293	max_left_minus=293	max_left_plus=281	max_min_left=149	max_min_left_minus=149	max_min_left_plus=146	max_min_right=149	max_min_right_minus=113	max_min_right_plus=149	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=293	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.95	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=81
JC	258	.	NC_000913	2973150	-1	NC_000913	2973534	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.326e-02	junction_possible_overlap_registers=283	key=NC_000913__2973150__-1__NC_000913__2973523__1__11____300__300__0__0	max_left=200	max_left_minus=200	max_left_plus=137	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=113	max_min_right_minus=113	max_min_right_plus=113	max_pos_hash_score=568	max_right=113	max_right_minus=113	max_right_plus=113	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.326e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	259	.	NC_000913	3084977	-1	NC_000913	3085260	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.676e-02	junction_possible_overlap_registers=283	key=NC_000913__3084977__-1__NC_000913__3085249__1__11____300__300__0__0	max_left=259	max_left_minus=164	max_left_plus=259	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=121	max_min_right_minus=121	max_min_right_plus=121	max_pos_hash_score=568	max_right=121	max_right_minus=121	max_right_plus=121	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.676e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3
JC	260	.	NC_000913	3176347	1	NC_000913	3176343	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.033e-02	junction_possible_overlap_registers=285	key=NC_000913__3176347__1__NC_000913__3176352__-1__9____300__300__0__0	max_left=257	max_left_minus=176	max_left_plus=257	max_min_left=95	max_min_left_minus=0	max_min_left_plus=95	max_min_right=113	max_min_right_minus=113	max_min_right_plus=34	max_pos_hash_score=572	max_right=196	max_right_minus=113	max_right_plus=196	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.033e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=3
JC	261	.	NC_000913	3306022	-1	NC_000913	3306437	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.330e-02	junction_possible_overlap_registers=282	key=NC_000913__3306022__-1__NC_000913__3306425__1__12____300__300__0__0	max_left=134	max_left_minus=54	max_left_plus=134	max_min_left=54	max_min_left_minus=54	max_min_left_plus=54	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_pos_hash_score=566	max_right=62	max_right_minus=62	max_right_plus=62	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.330e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=3
JC	262	.	NC_000913	3469040	-1	NC_000913	3469344	1	0	alignment_overlap=20	coverage_minus=5	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.055e-01	junction_possible_overlap_registers=274	key=NC_000913__3469040__-1__NC_000913__3469324__1__20____300__300__0__0	max_left=255	max_left_minus=255	max_left_plus=185	max_min_left=126	max_min_left_minus=45	max_min_left_plus=126	max_min_right=111	max_min_right_minus=80	max_min_right_plus=111	max_pos_hash_score=550	max_right=235	max_right_minus=144	max_right_plus=235	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.13	new_junction_read_count=11	polymorphism_frequency=1.055e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=11
JC	263	.	NC_000913	3648146	-1	NC_000913	3648378	1	0	alignment_overlap=58	coverage_minus=8	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.198e-01	junction_possible_overlap_registers=236	key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0	max_left=212	max_left_minus=212	max_left_plus=173	max_min_left=114	max_min_left_minus=114	max_min_left_plus=114	max_min_right=69	max_min_right_minus=30	max_min_right_plus=69	max_pos_hash_score=474	max_right=228	max_right_minus=228	max_right_plus=134	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.17	new_junction_read_count=12	polymorphism_frequency=1.198e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=58	side_1_possible_overlap_registers=294	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.41	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=12
JC	264	.	NC_000913	3648156	-1	NC_000913	3648388	1	0	alignment_overlap=5	coverage_minus=8	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.055e-01	junction_possible_overlap_registers=289	key=NC_000913__3648156__-1__NC_000913__3648383__1__5____300__300__0__0	max_left=170	max_left_minus=170	max_left_plus=134	max_min_left=138	max_min_left_minus=138	max_min_left_plus=104	max_min_right=125	max_min_right_minus=125	max_min_right_plus=54	max_pos_hash_score=580	max_right=253	max_right_minus=218	max_right_plus=253	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.15	new_junction_read_count=13	polymorphism_frequency=1.055e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=5	side_1_possible_overlap_registers=294	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.45	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=13
JC	265	.	NC_000913	3708466	-1	NC_000913	3708635	1	0	alignment_overlap=108	coverage_minus=20	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=186	key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0	max_left=156	max_left_minus=139	max_left_plus=156	max_min_left=92	max_min_left_minus=89	max_min_left_plus=92	max_min_right=92	max_min_right_minus=91	max_min_right_plus=92	max_pos_hash_score=374	max_right=190	max_right_minus=184	max_right_plus=190	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.71	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=108	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=186	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40
JC	266	.	NC_000913	3822646	1	NC_000913	3822651	-1	0	alignment_overlap=0	coverage_minus=36	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=148	max_min_left_minus=148	max_min_left_plus=145	max_min_right=147	max_min_right_minus=147	max_min_right_plus=138	max_pos_hash_score=590	max_right=282	max_right_minus=282	max_right_plus=270	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.85	new_junction_read_count=75	polymorphism_frequency=9.146e-01	pos_hash_score=42	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.08	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.08	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=73
JC	267	.	NC_000913	3949349	-1	NC_000913	3949705	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.362e-02	junction_possible_overlap_registers=285	key=NC_000913__3949349__-1__NC_000913__3949696__1__9____300__300__0__0	max_left=113	max_left_minus=113	max_left_plus=113	max_min_left=113	max_min_left_minus=113	max_min_left_plus=113	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=572	max_right=166	max_right_minus=166	max_right_plus=166	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.362e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
JC	268	.	NC_000913	4094350	-1	NC_000913	4094719	1	0	alignment_overlap=41	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.097e-01	junction_possible_overlap_registers=253	key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0	max_left=206	max_left_minus=206	max_left_plus=63	max_min_left=32	max_min_left_minus=0	max_min_left_plus=32	max_min_right=58	max_min_right_minus=49	max_min_right_plus=58	max_pos_hash_score=508	max_right=200	max_right_minus=49	max_right_plus=200	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=1.097e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=41	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=253	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=6
JC	269	.	NC_000913	4130166	-1	NC_000913	4130629	1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.046e-01	junction_possible_overlap_registers=282	key=NC_000913__4130166__-1__NC_000913__4130617__1__12____300__300__0__0	max_left=163	max_left_minus=163	max_left_plus=58	max_min_left=58	max_min_left_minus=58	max_min_left_plus=58	max_min_right=26	max_min_right_minus=24	max_min_right_plus=26	max_pos_hash_score=566	max_right=212	max_right_minus=212	max_right_plus=212	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=1.046e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.62	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=50	side_2_redundant=0	total_non_overlap_reads=6
JC	270	.	NC_000913	4254367	-1	NC_000913	4254914	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.802e-02	junction_possible_overlap_registers=284	key=NC_000913__4254367__-1__NC_000913__4254904__1__10____300__300__0__0	max_left=52	max_left_minus=52	max_left_plus=52	max_min_left=52	max_min_left_minus=52	max_min_left_plus=52	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=97	max_right_minus=97	max_right_plus=97	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.802e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=4
JC	271	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=4.745e-02	junction_possible_overlap_registers=285	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=222	max_left_minus=150	max_left_plus=222	max_min_left=144	max_min_left_minus=77	max_min_left_plus=144	max_min_right=141	max_min_right_minus=141	max_min_right_plus=76	max_pos_hash_score=572	max_right=214	max_right_minus=214	max_right_plus=150	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=4.745e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.51	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=134	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.29	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=6
JC	272	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=8	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.499e-02	junction_possible_overlap_registers=285	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=268	max_left_minus=268	max_left_plus=71	max_min_left=127	max_min_left_minus=127	max_min_left_plus=71	max_min_right=140	max_min_right_minus=140	max_min_right_plus=0	max_pos_hash_score=572	max_right=290	max_right_minus=241	max_right_plus=290	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.12	new_junction_read_count=10	polymorphism_frequency=7.499e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.58	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=140	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.29	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=10
JC	273	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.580e-01	junction_possible_overlap_registers=205	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=209	max_left_minus=209	max_left_plus=208	max_min_left=85	max_min_left_minus=85	max_min_left_plus=0	max_min_right=76	max_min_right_minus=47	max_min_right_plus=76	max_pos_hash_score=412	max_right=123	max_right_minus=123	max_right_plus=76	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.16	new_junction_read_count=10	polymorphism_frequency=1.580e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=89	side_1_possible_overlap_registers=294	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=10
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