#=GENOME_DIFF 1.0 #=CREATED 16:49:11 10 Oct 2025 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8831_S24_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8831_S24_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8831_S24_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=REFSEQ /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8831_S24_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8831_S24_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=CONVERTED-BASES 592935979 #=CONVERTED-READS 2012807 #=INPUT-BASES 593067011 #=INPUT-READS 2013254 #=MAPPED-BASES 573269666 #=MAPPED-READS 1947342 DEL 1 90,94 NC_000913 257908 776 SNP 2 21 NC_000913 803662 A SNP 3 41 NC_000913 1905761 A DEL 4 91,112 NC_000913 1978503 776 DEL 5 46,47 NC_000913 2173363 2 SNP 6 55 NC_000913 2479698 A SNP 7 57 NC_000913 2501143 A SNP 8 58 NC_000913 2502578 A SNP 9 59 NC_000913 2503979 C INS 10 76 NC_000913 3560455 G INS 11 87,88 NC_000913 4296381 GC RA 12 . NC_000913 58065 0 C A bias_e_value=2.62482e-08 bias_p_value=5.65492e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=223.8 fisher_strand_p_value=1.51085e-16 frequency=3.465e-01 ks_quality_p_value=1 major_base=C major_cov=25/58 major_frequency=6.535e-01 minor_base=A minor_cov=44/0 new_cov=44/0 polymorphism_frequency=3.465e-01 polymorphism_score=24.9 prediction=polymorphism ref_cov=25/58 total_cov=69/60 RA 13 . NC_000913 190843 0 C A bias_e_value=8.34292e-05 bias_p_value=1.7974e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=146.8 fisher_strand_p_value=6.17382e-13 frequency=4.231e-01 ks_quality_p_value=1 major_base=C major_cov=35/40 major_frequency=5.769e-01 minor_base=A minor_cov=55/0 new_cov=55/0 polymorphism_frequency=4.231e-01 polymorphism_score=16.8 prediction=polymorphism ref_cov=35/40 total_cov=90/40 RA 14 . NC_000913 265217 0 C A bias_e_value=0.00176188 bias_p_value=3.79581e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=236.3 fisher_strand_p_value=1.46285e-11 frequency=2.712e-01 ks_quality_p_value=1 major_base=C major_cov=31/55 major_frequency=7.288e-01 minor_base=A minor_cov=32/0 new_cov=32/0 polymorphism_frequency=2.712e-01 polymorphism_score=11.2 prediction=polymorphism ref_cov=31/55 total_cov=63/55 RA 15 . NC_000913 320845 0 C A bias_e_value=51.5702 bias_p_value=1.11103e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=126.4 fisher_strand_p_value=7.34619e-07 frequency=3.402e-01 ks_quality_p_value=1 major_base=C major_cov=36/28 major_frequency=6.598e-01 minor_base=A minor_cov=33/0 new_cov=33/0 polymorphism_frequency=3.402e-01 polymorphism_score=16.4 prediction=polymorphism ref_cov=36/28 total_cov=69/28 RA 16 . NC_000913 442471 0 C A bias_e_value=0.0255502 bias_p_value=5.50454e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=210.1 fisher_strand_p_value=2.37673e-10 frequency=3.381e-01 ks_quality_p_value=1 major_base=C major_cov=49/43 major_frequency=6.619e-01 minor_base=A minor_cov=47/0 new_cov=47/0 polymorphism_frequency=3.381e-01 polymorphism_score=13.8 prediction=polymorphism ref_cov=49/43 total_cov=96/43 RA 17 . NC_000913 564850 0 G T bias_e_value=0.00409332 bias_p_value=8.81866e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=315.1 fisher_strand_p_value=3.51752e-11 frequency=2.214e-01 ks_quality_p_value=1 major_base=G major_cov=67/42 major_frequency=7.786e-01 minor_base=T minor_cov=0/31 new_cov=0/31 polymorphism_frequency=2.214e-01 polymorphism_score=14.7 prediction=polymorphism ref_cov=67/42 total_cov=67/73 RA 18 . NC_000913 571586 0 G T bias_e_value=8.16852e-05 bias_p_value=1.75983e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=425.0 fisher_strand_p_value=6.04023e-13 frequency=2.211e-01 ks_quality_p_value=1 major_base=G major_cov=90/58 major_frequency=7.789e-01 minor_base=T minor_cov=1/41 new_cov=1/41 polymorphism_frequency=2.211e-01 polymorphism_score=12.9 prediction=polymorphism ref_cov=90/58 total_cov=91/99 RA 19 . NC_000913 710830 0 G T bias_e_value=0.0499657 bias_p_value=1.07646e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=296.9 fisher_strand_p_value=4.79309e-10 frequency=2.260e-01 ks_quality_p_value=1 major_base=G major_cov=62/51 major_frequency=7.740e-01 minor_base=T minor_cov=0/33 new_cov=0/33 polymorphism_frequency=2.260e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=62/51 total_cov=62/84 RA 20 . NC_000913 799484 0 C A bias_e_value=0.00231816 bias_p_value=4.99425e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=301.9 fisher_strand_p_value=1.94612e-11 frequency=2.302e-01 ks_quality_p_value=1 major_base=C major_cov=28/69 major_frequency=7.698e-01 minor_base=A minor_cov=28/1 new_cov=28/1 polymorphism_frequency=2.302e-01 polymorphism_score=12.2 prediction=polymorphism ref_cov=28/69 total_cov=56/70 RA 21 . NC_000913 803662 0 C A consensus_score=576.6 frequency=1 major_base=A major_cov=47/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/107 RA 22 . NC_000913 832448 0 G A bias_e_value=131.72 bias_p_value=2.83777e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=182.2 fisher_strand_p_value=2.01014e-06 frequency=2.340e-01 ks_quality_p_value=1 major_base=G major_cov=38/34 major_frequency=7.660e-01 minor_base=A minor_cov=0/22 new_cov=0/22 polymorphism_frequency=2.340e-01 polymorphism_score=16.2 prediction=polymorphism ref_cov=38/34 total_cov=38/56 RA 23 . NC_000913 847955 0 G A bias_e_value=8.55079e-13 bias_p_value=1.84219e-19 consensus_reject=FREQUENCY_CUTOFF consensus_score=289.2 fisher_strand_p_value=3.83713e-21 frequency=2.881e-01 ks_quality_p_value=1 major_base=G major_cov=90/36 major_frequency=7.119e-01 minor_base=A minor_cov=0/51 new_cov=0/51 polymorphism_frequency=2.881e-01 polymorphism_score=66.3 prediction=polymorphism ref_cov=90/36 total_cov=90/88 RA 24 . NC_000913 1097118 0 C A bias_e_value=3362160 bias_p_value=0.724346 consensus_reject=FREQUENCY_CUTOFF consensus_score=83.0 fisher_strand_p_value=0.35664 frequency=2.542e-01 ks_quality_p_value=1 major_base=C major_cov=14/30 major_frequency=7.458e-01 minor_base=A minor_cov=7/8 new_cov=7/8 polymorphism_frequency=2.542e-01 polymorphism_score=35.0 prediction=polymorphism ref_cov=14/30 total_cov=21/38 RA 25 . NC_000913 1097158 0 C T bias_e_value=1685120 bias_p_value=0.363042 consensus_reject=FREQUENCY_CUTOFF consensus_score=43.4 fisher_strand_p_value=0.158211 frequency=2.619e-01 ks_quality_p_value=0.724885 major_base=C major_cov=9/22 major_frequency=7.381e-01 minor_base=T minor_cov=6/5 new_cov=6/5 polymorphism_frequency=2.619e-01 polymorphism_score=24.9 prediction=polymorphism ref_cov=9/22 total_cov=15/27 RA 26 . NC_000913 1334966 0 A C bias_e_value=0.0169142 bias_p_value=3.644e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=399.9 fisher_strand_p_value=1.54465e-10 frequency=2.075e-01 ks_quality_p_value=1 major_base=A major_cov=91/77 major_frequency=7.925e-01 minor_base=C minor_cov=44/0 new_cov=44/0 polymorphism_frequency=2.075e-01 polymorphism_score=22.9 prediction=polymorphism ref_cov=91/77 total_cov=135/78 RA 27 . NC_000913 1335034 0 G T bias_e_value=5.09684e-12 bias_p_value=1.09807e-18 consensus_reject=FREQUENCY_CUTOFF consensus_score=485.5 fisher_strand_p_value=2.3775e-20 frequency=2.294e-01 ks_quality_p_value=1 major_base=G major_cov=114/54 major_frequency=7.706e-01 minor_base=T minor_cov=0/50 new_cov=0/50 polymorphism_frequency=2.294e-01 polymorphism_score=17.9 prediction=polymorphism ref_cov=114/54 total_cov=114/104 RA 28 . NC_000913 1351463 0 C A bias_e_value=0.446931 bias_p_value=9.62871e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=217.2 fisher_strand_p_value=4.77624e-09 frequency=3.022e-01 ks_quality_p_value=1 major_base=C major_cov=54/43 major_frequency=6.978e-01 minor_base=A minor_cov=42/0 new_cov=42/0 polymorphism_frequency=3.022e-01 polymorphism_score=18.7 prediction=polymorphism ref_cov=54/43 total_cov=96/43 RA 29 . NC_000913 1372018 0 C A bias_e_value=0.00638613 bias_p_value=1.37583e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=320.7 fisher_strand_p_value=5.59117e-11 frequency=2.097e-01 ks_quality_p_value=1 major_base=C major_cov=32/66 major_frequency=7.903e-01 minor_base=A minor_cov=26/0 new_cov=26/0 polymorphism_frequency=2.097e-01 polymorphism_score=12.6 prediction=polymorphism ref_cov=32/66 total_cov=59/66 RA 30 . NC_000913 1375723 0 C A bias_e_value=0.0117921 bias_p_value=2.54049e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=167.5 fisher_strand_p_value=1.05997e-10 frequency=3.491e-01 ks_quality_p_value=1 major_base=C major_cov=29/40 major_frequency=6.509e-01 minor_base=A minor_cov=37/0 new_cov=37/0 polymorphism_frequency=3.491e-01 polymorphism_score=14.4 prediction=polymorphism ref_cov=29/40 total_cov=66/40 RA 31 . NC_000913 1427992 0 G T bias_e_value=0.000332451 bias_p_value=7.16233e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=213.4 fisher_strand_p_value=2.58752e-12 frequency=3.522e-01 ks_quality_p_value=1 major_base=G major_cov=54/49 major_frequency=6.478e-01 minor_base=T minor_cov=1/55 new_cov=1/55 polymorphism_frequency=3.522e-01 polymorphism_score=21.6 prediction=polymorphism ref_cov=54/49 total_cov=55/104 RA 32 . NC_000913 1428856 0 C A bias_e_value=17.1388 bias_p_value=3.69239e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=155.7 fisher_strand_p_value=2.26521e-07 frequency=2.405e-01 ks_quality_p_value=1 major_base=C major_cov=21/39 major_frequency=7.595e-01 minor_base=A minor_cov=19/0 new_cov=19/0 polymorphism_frequency=2.405e-01 polymorphism_score=11.4 prediction=polymorphism ref_cov=21/39 total_cov=40/40 RA 33 . NC_000913 1466432 0 A G bias_e_value=2146180 bias_p_value=0.462375 consensus_reject=FREQUENCY_CUTOFF consensus_score=158.9 fisher_strand_p_value=0.182829 frequency=2.621e-01 ks_quality_p_value=0.902715 major_base=A major_cov=33/43 major_frequency=7.379e-01 minor_base=G minor_cov=16/11 new_cov=16/11 polymorphism_frequency=2.621e-01 polymorphism_score=58.0 prediction=polymorphism ref_cov=33/43 total_cov=49/55 RA 34 . NC_000913 1466438 0 T G bias_e_value=4355490 bias_p_value=0.938349 consensus_reject=FREQUENCY_CUTOFF consensus_score=159.1 fisher_strand_p_value=0.819025 frequency=2.330e-01 ks_quality_p_value=0.818134 major_base=T major_cov=37/42 major_frequency=7.670e-01 minor_base=G minor_cov=12/12 new_cov=12/12 polymorphism_frequency=2.330e-01 polymorphism_score=51.2 prediction=polymorphism ref_cov=37/42 total_cov=49/55 RA 35 . NC_000913 1502770 0 T C bias_e_value=0.000445197 bias_p_value=9.59136e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=279.9 fisher_strand_p_value=3.5034e-12 frequency=2.550e-01 ks_quality_p_value=1 major_base=T major_cov=65/46 major_frequency=7.450e-01 minor_base=C minor_cov=0/38 new_cov=0/38 polymorphism_frequency=2.550e-01 polymorphism_score=31.7 prediction=polymorphism ref_cov=65/46 total_cov=65/84 RA 36 . NC_000913 1637686 0 C T bias_e_value=0.00430305 bias_p_value=9.27052e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=360.1 fisher_strand_p_value=3.70545e-11 frequency=2.296e-01 ks_quality_p_value=1 major_base=C major_cov=66/85 major_frequency=7.704e-01 minor_base=T minor_cov=43/2 new_cov=43/2 polymorphism_frequency=2.296e-01 polymorphism_score=39.4 prediction=polymorphism ref_cov=66/85 total_cov=121/87 RA 37 . NC_000913 1657157 0 C A bias_e_value=2.19935e-05 bias_p_value=4.73829e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=299.6 fisher_strand_p_value=1.5539e-13 frequency=2.639e-01 ks_quality_p_value=1 major_base=C major_cov=39/67 major_frequency=7.361e-01 minor_base=A minor_cov=38/0 new_cov=38/0 polymorphism_frequency=2.639e-01 polymorphism_score=11.8 prediction=polymorphism ref_cov=39/67 total_cov=77/67 RA 38 . NC_000913 1661610 0 C A bias_e_value=1.76933 bias_p_value=3.81186e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=294.6 fisher_strand_p_value=2.03745e-08 frequency=2.117e-01 ks_quality_p_value=1 major_base=C major_cov=52/56 major_frequency=7.883e-01 minor_base=A minor_cov=29/0 new_cov=29/0 polymorphism_frequency=2.117e-01 polymorphism_score=10.6 prediction=polymorphism ref_cov=52/56 total_cov=81/56 RA 39 . NC_000913 1756353 0 C A bias_e_value=1.46379e-05 bias_p_value=3.15361e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=259.6 fisher_strand_p_value=1.02013e-13 frequency=2.933e-01 ks_quality_p_value=1 major_base=C major_cov=43/63 major_frequency=7.067e-01 minor_base=A minor_cov=44/0 new_cov=44/0 polymorphism_frequency=2.933e-01 polymorphism_score=14.1 prediction=polymorphism ref_cov=43/63 total_cov=87/63 RA 40 . NC_000913 1812509 0 G T bias_e_value=8.11045e-09 bias_p_value=1.74732e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=397.7 fisher_strand_p_value=4.52265e-17 frequency=2.540e-01 ks_quality_p_value=1 major_base=G major_cov=89/52 major_frequency=7.460e-01 minor_base=T minor_cov=0/48 new_cov=0/48 polymorphism_frequency=2.540e-01 polymorphism_score=19.2 prediction=polymorphism ref_cov=89/52 total_cov=89/100 RA 41 . NC_000913 1905761 0 G A bias_e_value=4641640 bias_p_value=0.999998 consensus_score=442.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998123 major_base=A major_cov=73/57 major_frequency=9.924e-01 minor_base=C minor_cov=1/0 new_cov=73/57 polymorphism_frequency=9.924e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=74/57 RA 42 . NC_000913 1919073 0 G T bias_e_value=2.81774 bias_p_value=6.07055e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=249.8 fisher_strand_p_value=3.33235e-08 frequency=2.101e-01 ks_quality_p_value=1 major_base=G major_cov=53/41 major_frequency=7.899e-01 minor_base=T minor_cov=0/25 new_cov=0/25 polymorphism_frequency=2.101e-01 polymorphism_score=10.4 prediction=polymorphism ref_cov=53/41 total_cov=53/66 RA 43 . NC_000913 1922815 0 C A bias_e_value=0.0462575 bias_p_value=9.96574e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=241.5 fisher_strand_p_value=4.42148e-10 frequency=3.165e-01 ks_quality_p_value=1 major_base=C major_cov=29/66 major_frequency=6.835e-01 minor_base=A minor_cov=38/6 new_cov=38/6 polymorphism_frequency=3.165e-01 polymorphism_score=19.2 prediction=polymorphism ref_cov=29/66 total_cov=67/72 RA 44 . NC_000913 2012540 0 G T bias_e_value=0.000101022 bias_p_value=2.17641e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=278.2 fisher_strand_p_value=7.5269e-13 frequency=2.903e-01 ks_quality_p_value=1 major_base=G major_cov=61/49 major_frequency=7.097e-01 minor_base=T minor_cov=0/45 new_cov=0/45 polymorphism_frequency=2.903e-01 polymorphism_score=10.4 prediction=polymorphism ref_cov=61/49 total_cov=61/94 RA 45 . NC_000913 2098025 0 C A bias_e_value=5.68842e-05 bias_p_value=1.22552e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=292.4 fisher_strand_p_value=4.15291e-13 frequency=2.465e-01 ks_quality_p_value=1 major_base=C major_cov=38/69 major_frequency=7.535e-01 minor_base=A minor_cov=35/0 new_cov=35/0 polymorphism_frequency=2.465e-01 polymorphism_score=10.2 prediction=polymorphism ref_cov=38/69 total_cov=73/69 RA 46 . NC_000913 2173363 0 C . consensus_score=500.7 frequency=1 major_base=. major_cov=51/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/53 RA 47 . NC_000913 2173364 0 C . consensus_score=500.7 frequency=1 major_base=. major_cov=51/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/53 RA 48 . NC_000913 2185849 0 G T bias_e_value=0.220436 bias_p_value=4.74909e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=241.7 fisher_strand_p_value=2.27201e-09 frequency=2.743e-01 ks_quality_p_value=1 major_base=G major_cov=55/27 major_frequency=7.257e-01 minor_base=T minor_cov=2/29 new_cov=2/29 polymorphism_frequency=2.743e-01 polymorphism_score=15.6 prediction=polymorphism ref_cov=55/27 total_cov=57/56 RA 49 . NC_000913 2244442 0 C A bias_e_value=0.00150543 bias_p_value=3.2433e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=251.9 fisher_strand_p_value=1.24209e-11 frequency=2.564e-01 ks_quality_p_value=1 major_base=C major_cov=29/58 major_frequency=7.436e-01 minor_base=A minor_cov=30/0 new_cov=30/0 polymorphism_frequency=2.564e-01 polymorphism_score=13.8 prediction=polymorphism ref_cov=29/58 total_cov=59/59 RA 50 . NC_000913 2288418 0 G T bias_e_value=1.31485e-09 bias_p_value=2.83273e-16 consensus_reject=FREQUENCY_CUTOFF consensus_score=277.8 fisher_strand_p_value=6.99414e-18 frequency=3.373e-01 ks_quality_p_value=1 major_base=G major_cov=69/41 major_frequency=6.627e-01 minor_base=T minor_cov=0/56 new_cov=0/56 polymorphism_frequency=3.373e-01 polymorphism_score=28.3 prediction=polymorphism ref_cov=69/41 total_cov=69/97 RA 51 . NC_000913 2412396 0 C A bias_e_value=0.0486877 bias_p_value=1.04893e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=331.2 fisher_strand_p_value=4.66486e-10 frequency=2.237e-01 ks_quality_p_value=1 major_base=C major_cov=48/70 major_frequency=7.763e-01 minor_base=A minor_cov=33/1 new_cov=33/1 polymorphism_frequency=2.237e-01 polymorphism_score=11.5 prediction=polymorphism ref_cov=48/70 total_cov=81/71 RA 52 . NC_000913 2472817 0 C A bias_e_value=0.00929002 bias_p_value=2.00145e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=153.0 fisher_strand_p_value=8.26483e-11 frequency=3.646e-01 ks_quality_p_value=1 major_base=C major_cov=23/38 major_frequency=6.354e-01 minor_base=A minor_cov=35/0 new_cov=35/0 polymorphism_frequency=3.646e-01 polymorphism_score=11.8 prediction=polymorphism ref_cov=23/38 total_cov=58/38 RA 53 . NC_000913 2477264 0 T C bias_e_value=5.15716e-06 bias_p_value=1.11106e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=253.4 fisher_strand_p_value=3.47302e-14 frequency=3.016e-01 ks_quality_p_value=1 major_base=T major_cov=29/59 major_frequency=6.984e-01 minor_base=C minor_cov=38/0 new_cov=38/0 polymorphism_frequency=3.016e-01 polymorphism_score=10.7 prediction=polymorphism ref_cov=29/59 total_cov=68/59 RA 54 . NC_000913 2477265 0 A C bias_e_value=4.22107e-12 bias_p_value=9.0939e-19 consensus_reject=FREQUENCY_CUTOFF consensus_score=182.2 fisher_strand_p_value=1.96081e-20 frequency=3.937e-01 ks_quality_p_value=1 major_base=A major_cov=18/59 major_frequency=6.063e-01 minor_base=C minor_cov=50/0 new_cov=50/0 polymorphism_frequency=3.937e-01 polymorphism_score=48.5 prediction=polymorphism ref_cov=18/59 total_cov=68/59 RA 55 . NC_000913 2479698 0 G A consensus_score=343.5 frequency=1 major_base=A major_cov=51/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/45 RA 56 . NC_000913 2493432 0 G C bias_e_value=3365060 bias_p_value=0.72497 consensus_reject=FREQUENCY_CUTOFF consensus_score=16.8 fisher_strand_p_value=0.504174 frequency=4.211e-01 ks_quality_p_value=0.708576 major_base=G major_cov=8/14 major_frequency=5.789e-01 minor_base=C minor_cov=4/12 new_cov=4/12 polymorphism_frequency=4.211e-01 polymorphism_score=50.7 prediction=polymorphism ref_cov=8/14 total_cov=12/26 RA 57 . NC_000913 2501143 0 G A consensus_score=476.1 frequency=1 major_base=A major_cov=51/79 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/79 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/79 RA 58 . NC_000913 2502578 0 G A consensus_score=371.8 frequency=1 major_base=A major_cov=43/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/59 RA 59 . NC_000913 2503979 0 T C consensus_score=387.5 frequency=1 major_base=C major_cov=39/68 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/68 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/68 RA 60 . NC_000913 2508670 0 C A bias_e_value=0.647763 bias_p_value=1.39554e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=262.4 fisher_strand_p_value=7.05929e-09 frequency=2.149e-01 ks_quality_p_value=1 major_base=C major_cov=39/56 major_frequency=7.851e-01 minor_base=A minor_cov=26/0 new_cov=26/0 polymorphism_frequency=2.149e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=39/56 total_cov=65/56 RA 61 . NC_000913 2543855 0 C A bias_e_value=21.1878 bias_p_value=4.5647e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=269.8 fisher_strand_p_value=2.83974e-07 frequency=2.131e-01 ks_quality_p_value=1 major_base=C major_cov=41/55 major_frequency=7.869e-01 minor_base=A minor_cov=25/1 new_cov=25/1 polymorphism_frequency=2.131e-01 polymorphism_score=10.3 prediction=polymorphism ref_cov=41/55 total_cov=66/57 RA 62 . NC_000913 2722838 0 G T bias_e_value=1.5679e-06 bias_p_value=3.37789e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=276.3 fisher_strand_p_value=1.01684e-14 frequency=2.966e-01 ks_quality_p_value=1 major_base=G major_cov=65/37 major_frequency=7.034e-01 minor_base=T minor_cov=0/43 new_cov=0/43 polymorphism_frequency=2.966e-01 polymorphism_score=12.3 prediction=polymorphism ref_cov=65/37 total_cov=65/80 RA 63 . NC_000913 2767445 0 C A bias_e_value=3.27538e-11 bias_p_value=7.05649e-18 consensus_reject=FREQUENCY_CUTOFF consensus_score=240.7 fisher_strand_p_value=1.59349e-19 frequency=3.140e-01 ks_quality_p_value=1 major_base=C major_cov=15/68 major_frequency=6.860e-01 minor_base=A minor_cov=38/0 new_cov=38/0 polymorphism_frequency=3.140e-01 polymorphism_score=27.3 prediction=polymorphism ref_cov=15/68 total_cov=53/68 RA 64 . NC_000913 2767449 0 C A bias_e_value=1.592e-05 bias_p_value=3.42982e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=305.1 fisher_strand_p_value=1.11261e-13 frequency=2.308e-01 ks_quality_p_value=1 major_base=C major_cov=28/72 major_frequency=7.692e-01 minor_base=A minor_cov=30/0 new_cov=30/0 polymorphism_frequency=2.308e-01 polymorphism_score=14.3 prediction=polymorphism ref_cov=28/72 total_cov=58/72 RA 65 . NC_000913 2815937 0 G T bias_e_value=0.00196886 bias_p_value=4.24173e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=310.8 fisher_strand_p_value=1.64201e-11 frequency=2.318e-01 ks_quality_p_value=1 major_base=G major_cov=68/48 major_frequency=7.682e-01 minor_base=T minor_cov=0/35 new_cov=0/35 polymorphism_frequency=2.318e-01 polymorphism_score=12.5 prediction=polymorphism ref_cov=68/48 total_cov=68/83 RA 66 . NC_000913 2818324 0 G A bias_e_value=3909040 bias_p_value=0.842166 consensus_reject=FREQUENCY_CUTOFF consensus_score=173.1 fisher_strand_p_value=0.493699 frequency=2.872e-01 ks_quality_p_value=1 major_base=G major_cov=31/36 major_frequency=7.128e-01 minor_base=A minor_cov=10/17 new_cov=10/17 polymorphism_frequency=2.872e-01 polymorphism_score=56.4 prediction=polymorphism ref_cov=31/36 total_cov=41/53 RA 67 . NC_000913 2855852 0 C A bias_e_value=1.21855 bias_p_value=2.62524e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=237.2 fisher_strand_p_value=1.37427e-08 frequency=2.479e-01 ks_quality_p_value=1 major_base=C major_cov=43/48 major_frequency=7.521e-01 minor_base=A minor_cov=30/0 new_cov=30/0 polymorphism_frequency=2.479e-01 polymorphism_score=13.9 prediction=polymorphism ref_cov=43/48 total_cov=73/48 RA 68 . NC_000913 2990480 0 C A bias_e_value=5.59973e-07 bias_p_value=1.20641e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=324.4 fisher_strand_p_value=3.51922e-15 frequency=3.053e-01 ks_quality_p_value=1 major_base=C major_cov=62/70 major_frequency=6.947e-01 minor_base=A minor_cov=58/0 new_cov=58/0 polymorphism_frequency=3.053e-01 polymorphism_score=11.3 prediction=polymorphism ref_cov=62/70 total_cov=120/70 RA 69 . NC_000913 3032307 0 C T bias_e_value=1.83104e-06 bias_p_value=3.9448e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=228.3 fisher_strand_p_value=1.19324e-14 frequency=2.756e-01 ks_quality_p_value=1 major_base=C major_cov=27/65 major_frequency=7.244e-01 minor_base=T minor_cov=35/0 new_cov=35/0 polymorphism_frequency=2.756e-01 polymorphism_score=30.5 prediction=polymorphism ref_cov=27/65 total_cov=63/65 RA 70 . NC_000913 3054886 0 G T bias_e_value=1.11961e-05 bias_p_value=2.41208e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=250.5 fisher_strand_p_value=7.73336e-14 frequency=2.774e-01 ks_quality_p_value=1 major_base=G major_cov=30/69 major_frequency=7.226e-01 minor_base=T minor_cov=37/1 new_cov=37/1 polymorphism_frequency=2.774e-01 polymorphism_score=28.5 prediction=polymorphism ref_cov=30/69 total_cov=67/70 RA 71 . NC_000913 3054894 0 G T bias_e_value=111.263 bias_p_value=2.39706e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=211.7 fisher_strand_p_value=1.6764e-06 frequency=2.677e-01 ks_quality_p_value=1 major_base=G major_cov=29/64 major_frequency=7.323e-01 minor_base=T minor_cov=27/7 new_cov=27/7 polymorphism_frequency=2.677e-01 polymorphism_score=25.4 prediction=polymorphism ref_cov=29/64 total_cov=56/71 RA 72 . NC_000913 3115105 0 G T bias_e_value=0.000674452 bias_p_value=1.45304e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=206.8 fisher_strand_p_value=5.39242e-12 frequency=2.963e-01 ks_quality_p_value=1 major_base=G major_cov=51/25 major_frequency=7.037e-01 minor_base=T minor_cov=0/32 new_cov=0/32 polymorphism_frequency=2.963e-01 polymorphism_score=12.6 prediction=polymorphism ref_cov=51/25 total_cov=51/57 RA 73 . NC_000913 3191376 0 G T bias_e_value=0.0101994 bias_p_value=2.19737e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=343.2 fisher_strand_p_value=9.11051e-11 frequency=2.286e-01 ks_quality_p_value=1 major_base=G major_cov=68/67 major_frequency=7.714e-01 minor_base=T minor_cov=0/40 new_cov=0/40 polymorphism_frequency=2.286e-01 polymorphism_score=15.1 prediction=polymorphism ref_cov=68/67 total_cov=68/107 RA 74 . NC_000913 3226224 0 G T bias_e_value=2.85541e-08 bias_p_value=6.1517e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=321.6 fisher_strand_p_value=1.64739e-16 frequency=2.831e-01 ks_quality_p_value=1 major_base=G major_cov=76/43 major_frequency=7.169e-01 minor_base=T minor_cov=0/47 new_cov=0/47 polymorphism_frequency=2.831e-01 polymorphism_score=15.1 prediction=polymorphism ref_cov=76/43 total_cov=76/90 RA 75 . NC_000913 3268247 0 G T bias_e_value=7.56927e-07 bias_p_value=1.63073e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=323.2 fisher_strand_p_value=4.80048e-15 frequency=2.840e-01 ks_quality_p_value=1 major_base=G major_cov=72/49 major_frequency=7.160e-01 minor_base=T minor_cov=0/48 new_cov=0/48 polymorphism_frequency=2.840e-01 polymorphism_score=14.3 prediction=polymorphism ref_cov=72/49 total_cov=72/97 RA 76 . NC_000913 3560455 1 . G bias_e_value=4641650 bias_p_value=1 consensus_score=522.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=61/76 major_frequency=9.928e-01 minor_base=A minor_cov=0/1 new_cov=61/76 polymorphism_frequency=9.928e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=61/78 RA 77 . NC_000913 3741871 0 G T bias_e_value=1.44569e-08 bias_p_value=3.11461e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=263.8 fisher_strand_p_value=8.18743e-17 frequency=3.312e-01 ks_quality_p_value=1 major_base=G major_cov=66/39 major_frequency=6.688e-01 minor_base=T minor_cov=0/52 new_cov=0/52 polymorphism_frequency=3.312e-01 polymorphism_score=29.7 prediction=polymorphism ref_cov=66/39 total_cov=66/91 RA 78 . NC_000913 3768435 0 C A bias_e_value=1.64774e-10 bias_p_value=3.54991e-17 consensus_reject=FREQUENCY_CUTOFF consensus_score=461.7 fisher_strand_p_value=8.32734e-19 frequency=2.404e-01 ks_quality_p_value=1 major_base=C major_cov=55/103 major_frequency=7.596e-01 minor_base=A minor_cov=50/0 new_cov=50/0 polymorphism_frequency=2.404e-01 polymorphism_score=12.7 prediction=polymorphism ref_cov=55/103 total_cov=105/103 RA 79 . NC_000913 3835880 0 C A bias_e_value=0.18985 bias_p_value=4.09015e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=394.6 fisher_strand_p_value=1.94219e-09 frequency=2.193e-01 ks_quality_p_value=1 major_base=C major_cov=67/79 major_frequency=7.807e-01 minor_base=A minor_cov=39/2 new_cov=39/2 polymorphism_frequency=2.193e-01 polymorphism_score=11.1 prediction=polymorphism ref_cov=67/79 total_cov=106/81 RA 80 . NC_000913 3843750 0 C A bias_e_value=27.9187 bias_p_value=6.01482e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=270.2 fisher_strand_p_value=3.81167e-07 frequency=2.428e-01 ks_quality_p_value=1 major_base=C major_cov=85/46 major_frequency=7.572e-01 minor_base=A minor_cov=42/0 new_cov=42/0 polymorphism_frequency=2.428e-01 polymorphism_score=13.0 prediction=polymorphism ref_cov=85/46 total_cov=127/46 RA 81 . NC_000913 3896780 0 C A bias_e_value=6.22884e-06 bias_p_value=1.34194e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=283.9 fisher_strand_p_value=4.22045e-14 frequency=2.837e-01 ks_quality_p_value=1 major_base=C major_cov=36/65 major_frequency=7.163e-01 minor_base=A minor_cov=40/0 new_cov=40/0 polymorphism_frequency=2.837e-01 polymorphism_score=11.6 prediction=polymorphism ref_cov=36/65 total_cov=76/65 RA 82 . NC_000913 3911533 0 C A bias_e_value=1.06506e-06 bias_p_value=2.29457e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=301.8 fisher_strand_p_value=6.82538e-15 frequency=2.914e-01 ks_quality_p_value=1 major_base=C major_cov=54/70 major_frequency=7.086e-01 minor_base=A minor_cov=51/0 new_cov=51/0 polymorphism_frequency=2.914e-01 polymorphism_score=21.5 prediction=polymorphism ref_cov=54/70 total_cov=105/70 RA 83 . NC_000913 4074572 0 C A bias_e_value=0.355755 bias_p_value=7.6644e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=211.0 fisher_strand_p_value=3.75713e-09 frequency=2.773e-01 ks_quality_p_value=1 major_base=C major_cov=35/51 major_frequency=7.227e-01 minor_base=A minor_cov=32/1 new_cov=32/1 polymorphism_frequency=2.773e-01 polymorphism_score=14.8 prediction=polymorphism ref_cov=35/51 total_cov=67/52 RA 84 . NC_000913 4226614 0 C A bias_e_value=11.5067 bias_p_value=2.479e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=197.7 fisher_strand_p_value=1.48226e-07 frequency=2.475e-01 ks_quality_p_value=1 major_base=C major_cov=34/42 major_frequency=7.525e-01 minor_base=A minor_cov=25/0 new_cov=25/0 polymorphism_frequency=2.475e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=34/42 total_cov=59/42 RA 85 . NC_000913 4296190 0 A G bias_e_value=132552 bias_p_value=0.028557 consensus_reject=FREQUENCY_CUTOFF consensus_score=50.3 fisher_strand_p_value=0.00669731 frequency=2.368e-01 ks_quality_p_value=0.664747 major_base=A major_cov=10/19 major_frequency=7.632e-01 minor_base=G minor_cov=8/1 new_cov=8/1 polymorphism_frequency=2.368e-01 polymorphism_score=22.2 prediction=polymorphism ref_cov=10/19 total_cov=18/20 RA 86 . NC_000913 4296191 0 A C bias_e_value=69721.7 bias_p_value=0.0150209 consensus_reject=FREQUENCY_CUTOFF consensus_score=34.0 fisher_strand_p_value=0.00254036 frequency=2.632e-01 ks_quality_p_value=0.82491 major_base=A major_cov=9/19 major_frequency=7.368e-01 minor_base=C minor_cov=9/1 new_cov=9/1 polymorphism_frequency=2.632e-01 polymorphism_score=23.9 prediction=polymorphism ref_cov=9/19 total_cov=18/20 RA 87 . NC_000913 4296380 1 . C bias_e_value=3522430 bias_p_value=0.758874 consensus_score=336.3 fisher_strand_p_value=0.391753 frequency=1 ks_quality_p_value=1 major_base=C major_cov=59/37 major_frequency=9.897e-01 minor_base=T minor_cov=0/1 new_cov=59/37 polymorphism_frequency=9.897e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/38 RA 88 . NC_000913 4296380 2 . G bias_e_value=3504940 bias_p_value=0.755107 consensus_score=325.3 fisher_strand_p_value=0.387755 frequency=1 ks_quality_p_value=1 major_base=G major_cov=60/37 major_frequency=9.898e-01 minor_base=T minor_cov=0/1 new_cov=60/37 polymorphism_frequency=9.898e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/38 RA 89 . NC_000913 4360965 0 C A bias_e_value=4.36523e-16 bias_p_value=9.40448e-23 consensus_reject=FREQUENCY_CUTOFF consensus_score=419.1 fisher_strand_p_value=1.68724e-24 frequency=2.723e-01 ks_quality_p_value=1 major_base=C major_cov=33/106 major_frequency=7.277e-01 minor_base=A minor_cov=52/0 new_cov=52/0 polymorphism_frequency=2.723e-01 polymorphism_score=28.4 prediction=polymorphism ref_cov=33/106 total_cov=85/106 MC 90 . NC_000913 257908 258683 0 0 left_inside_cov=0 left_outside_cov=152 right_inside_cov=2 right_outside_cov=154 MC 91 . NC_000913 1978503 1979278 0 0 left_inside_cov=0 left_outside_cov=154 right_inside_cov=2 right_outside_cov=155 MC 92 . NC_000913 3423806 3424487 428 249 left_inside_cov=42 left_outside_cov=47 right_inside_cov=45 right_outside_cov=46 JC 93 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 coverage_minus=87 coverage_plus=86 flanking_left=300 flanking_right=300 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=293 key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0 max_left=282 max_left_minus=264 max_left_plus=282 max_min_left=149 max_min_left_minus=149 max_min_left_plus=148 max_min_right=141 max_min_right_minus=141 max_min_right_plus=134 max_pos_hash_score=588 max_right=299 max_right_minus=278 max_right_plus=299 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.43 new_junction_read_count=177 polymorphism_frequency=1.000e+00 pos_hash_score=80 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=173 JC 94 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=57 coverage_plus=88 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=285 key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0 max_left=291 max_left_minus=291 max_left_plus=287 max_min_left=143 max_min_left_minus=103 max_min_left_plus=143 max_min_right=144 max_min_right_minus=131 max_min_right_plus=144 max_pos_hash_score=572 max_right=290 max_right_minus=283 max_right_plus=290 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.26 new_junction_read_count=152 polymorphism_frequency=1.000e+00 pos_hash_score=74 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=293 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=145 JC 95 . NC_000913 631443 1 NC_000913 631447 -1 0 alignment_overlap=2 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.460e-02 junction_possible_overlap_registers=291 key=NC_000913__631443__1__NC_000913__631449__-1__2____300__300__0__0 max_left=229 max_left_minus=229 max_left_plus=122 max_min_left=122 max_min_left_minus=0 max_min_left_plus=122 max_min_right=69 max_min_right_minus=69 max_min_right_plus=0 max_pos_hash_score=584 max_right=295 max_right_minus=69 max_right_plus=295 neg_log10_pos_hash_p_value=11.4 new_junction_coverage=0.02 new_junction_read_count=3 polymorphism_frequency=3.460e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.69 side_1_overlap=2 side_1_possible_overlap_registers=293 side_1_read_count=85 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.68 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=83 side_2_redundant=0 total_non_overlap_reads=3 JC 96 . NC_000913 780629 -1 NC_000913 780919 1 0 alignment_overlap=76 coverage_minus=12 coverage_plus=15 flanking_left=300 flanking_right=300 frequency=2.312e-01 junction_possible_overlap_registers=217 key=NC_000913__780629__-1__NC_000913__780843__1__76____300__300__0__0 max_left=216 max_left_minus=216 max_left_plus=136 max_min_left=86 max_min_left_minus=69 max_min_left_plus=86 max_min_right=109 max_min_right_minus=109 max_min_right_plus=92 max_pos_hash_score=436 max_right=197 max_right_minus=197 max_right_plus=153 neg_log10_pos_hash_p_value=3.1 new_junction_coverage=0.29 new_junction_read_count=27 polymorphism_frequency=2.312e-01 pos_hash_score=21 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.01 side_1_overlap=76 side_1_possible_overlap_registers=293 side_1_read_count=125 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.95 side_2_overlap=0 side_2_possible_overlap_registers=217 side_2_read_count=87 side_2_redundant=0 total_non_overlap_reads=27 JC 97 . NC_000913 780629 -1 NC_000913 781223 1 0 alignment_overlap=76 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.937e-02 junction_possible_overlap_registers=217 key=NC_000913__780629__-1__NC_000913__781147__1__76____300__300__0__0 max_left=216 max_left_minus=216 max_left_plus=55 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=42 max_min_right_minus=42 max_min_right_plus=42 max_pos_hash_score=436 max_right=42 max_right_minus=42 max_right_plus=42 neg_log10_pos_hash_p_value=8.2 new_junction_coverage=0.05 new_junction_read_count=5 polymorphism_frequency=4.937e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.04 side_1_overlap=76 side_1_possible_overlap_registers=293 side_1_read_count=129 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.06 side_2_overlap=0 side_2_possible_overlap_registers=217 side_2_read_count=97 side_2_redundant=0 total_non_overlap_reads=5 JC 98 . NC_000913 780918 -1 NC_000913 781321 1 0 alignment_overlap=18 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.836e-02 junction_possible_overlap_registers=275 key=NC_000913__780918__-1__NC_000913__781303__1__18____300__300__0__0 max_left=156 max_left_minus=156 max_left_plus=92 max_min_left=92 max_min_left_minus=92 max_min_left_plus=92 max_min_right=2 max_min_right_minus=2 max_min_right_plus=0 max_pos_hash_score=552 max_right=110 max_right_minus=110 max_right_plus=110 neg_log10_pos_hash_p_value=11.0 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.836e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.85 side_1_overlap=18 side_1_possible_overlap_registers=293 side_1_read_count=105 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.92 side_2_overlap=0 side_2_possible_overlap_registers=275 side_2_read_count=107 side_2_redundant=0 total_non_overlap_reads=3 JC 99 . NC_000913 781016 -1 NC_000913 781809 1 0 alignment_overlap=37 coverage_minus=7 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.321e-01 junction_possible_overlap_registers=256 key=NC_000913__781016__-1__NC_000913__781772__1__37____300__300__0__0 max_left=258 max_left_minus=258 max_left_plus=124 max_min_left=124 max_min_left_minus=43 max_min_left_plus=124 max_min_right=62 max_min_right_minus=62 max_min_right_plus=0 max_pos_hash_score=514 max_right=156 max_right_minus=156 max_right_plus=156 neg_log10_pos_hash_p_value=7.3 new_junction_coverage=0.12 new_junction_read_count=13 polymorphism_frequency=1.321e-01 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.71 side_1_overlap=37 side_1_possible_overlap_registers=293 side_1_read_count=88 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.87 side_2_overlap=0 side_2_possible_overlap_registers=256 side_2_read_count=94 side_2_redundant=0 total_non_overlap_reads=11 JC 100 . NC_000913 781369 1 NC_000913 2521006 -1 -2 alignment_overlap=-2 coverage_minus=5 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.072e-01 junction_possible_overlap_registers=291 key=NC_000913__781369__1__NC_000913__2521006__-1__-2__GG__300__300__0__0 max_left=178 max_left_minus=178 max_left_plus=178 max_min_left=9 max_min_left_minus=0 max_min_left_plus=9 max_min_right=76 max_min_right_minus=76 max_min_right_plus=47 max_pos_hash_score=584 max_right=287 max_right_minus=76 max_right_plus=287 neg_log10_pos_hash_p_value=8.1 new_junction_coverage=0.11 new_junction_read_count=13 polymorphism_frequency=1.072e-01 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.79 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=98 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.97 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=120 side_2_redundant=0 total_non_overlap_reads=9 unique_read_sequence=GG JC 101 . NC_000913 781369 1 NC_000913 2521127 -1 -1 alignment_overlap=-1 coverage_minus=5 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1.012e-01 junction_possible_overlap_registers=292 key=NC_000913__781369__1__NC_000913__2521127__-1__-1__G__300__300__0__0 max_left=178 max_left_minus=178 max_left_plus=178 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=77 max_min_right_minus=77 max_min_right_plus=48 max_pos_hash_score=586 max_right=77 max_right_minus=77 max_right_plus=48 neg_log10_pos_hash_p_value=8.6 new_junction_coverage=0.09 new_junction_read_count=11 polymorphism_frequency=1.012e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.79 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=98 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.79 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=98 side_2_redundant=0 total_non_overlap_reads=8 unique_read_sequence=G JC 102 . NC_000913 781446 -1 NC_000913 781811 1 0 alignment_overlap=20 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.554e-02 junction_possible_overlap_registers=273 key=NC_000913__781446__-1__NC_000913__781791__1__20____300__300__0__0 max_left=124 max_left_minus=124 max_left_plus=124 max_min_left=124 max_min_left_minus=124 max_min_left_plus=124 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=548 max_right=277 max_right_minus=235 max_right_plus=277 neg_log10_pos_hash_p_value=10.3 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=6.554e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.58 side_1_overlap=20 side_1_possible_overlap_registers=293 side_1_read_count=72 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.90 side_2_overlap=0 side_2_possible_overlap_registers=273 side_2_read_count=104 side_2_redundant=0 total_non_overlap_reads=4 JC 103 . NC_000913 1207790 1 NC_000913 1209619 1 0 alignment_overlap=16 coverage_minus=59 coverage_plus=52 flanking_left=300 flanking_right=300 frequency=7.635e-01 junction_possible_overlap_registers=277 key=NC_000913__1207790__1__NC_000913__1209603__1__16____300__300__0__0 max_left=271 max_left_minus=271 max_left_plus=246 max_min_left=139 max_min_left_minus=108 max_min_left_plus=139 max_min_right=140 max_min_right_minus=126 max_min_right_plus=140 max_pos_hash_score=556 max_right=282 max_right_minus=254 max_right_plus=282 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.99 new_junction_read_count=116 polymorphism_frequency=7.635e-01 pos_hash_score=60 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.32 side_1_overlap=16 side_1_possible_overlap_registers=293 side_1_read_count=39 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.30 side_2_overlap=0 side_2_possible_overlap_registers=277 side_2_read_count=35 side_2_redundant=0 total_non_overlap_reads=111 JC 104 . NC_000913 1207805 -1 NC_000913 1209602 -1 0 alignment_overlap=16 coverage_minus=38 coverage_plus=29 flanking_left=300 flanking_right=300 frequency=6.223e-01 junction_possible_overlap_registers=277 key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____300__300__0__0 max_left=282 max_left_minus=282 max_left_plus=276 max_min_left=139 max_min_left_minus=139 max_min_left_plus=127 max_min_right=142 max_min_right_minus=142 max_min_right_plus=117 max_pos_hash_score=556 max_right=274 max_right_minus=270 max_right_plus=274 neg_log10_pos_hash_p_value=1.0 new_junction_coverage=0.57 new_junction_read_count=67 polymorphism_frequency=6.223e-01 pos_hash_score=50 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.40 side_1_overlap=16 side_1_possible_overlap_registers=293 side_1_read_count=49 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.30 side_2_overlap=0 side_2_possible_overlap_registers=277 side_2_read_count=35 side_2_redundant=0 total_non_overlap_reads=67 JC 105 . NC_000913 1286728 -1 NC_000913 1287263 1 0 alignment_overlap=21 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.235e-02 junction_possible_overlap_registers=272 key=NC_000913__1286728__-1__NC_000913__1287242__1__21____300__300__0__0 max_left=30 max_left_minus=30 max_left_plus=30 max_min_left=30 max_min_left_minus=30 max_min_left_plus=30 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=546 max_right=60 max_right_minus=60 max_right_plus=60 neg_log10_pos_hash_p_value=10.9 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.235e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.85 side_1_overlap=21 side_1_possible_overlap_registers=293 side_1_read_count=105 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.71 side_2_overlap=0 side_2_possible_overlap_registers=272 side_2_read_count=82 side_2_redundant=0 total_non_overlap_reads=3 JC 106 . NC_000913 1286728 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.533e-02 junction_possible_overlap_registers=273 key=NC_000913__1286728__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=31 max_left_minus=31 max_left_plus=31 max_min_left=31 max_min_left_minus=31 max_min_left_plus=31 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=548 max_right=60 max_right_minus=60 max_right_plus=60 neg_log10_pos_hash_p_value=11.0 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.533e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.85 side_1_overlap=20 side_1_possible_overlap_registers=293 side_1_read_count=105 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.57 side_2_overlap=0 side_2_possible_overlap_registers=273 side_2_read_count=66 side_2_redundant=0 total_non_overlap_reads=3 JC 107 . NC_000913 1286906 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.602e-02 junction_possible_overlap_registers=273 key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=270 max_left_minus=270 max_left_plus=242 max_min_left=4 max_min_left_minus=0 max_min_left_plus=4 max_min_right=36 max_min_right_minus=9 max_min_right_plus=36 max_pos_hash_score=548 max_right=276 max_right_minus=9 max_right_plus=276 neg_log10_pos_hash_p_value=9.7 new_junction_coverage=0.04 new_junction_read_count=5 polymorphism_frequency=6.602e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.65 side_1_overlap=20 side_1_possible_overlap_registers=293 side_1_read_count=81 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.57 side_2_overlap=0 side_2_possible_overlap_registers=273 side_2_read_count=66 side_2_redundant=0 total_non_overlap_reads=5 JC 108 . NC_000913 1287262 -1 NC_000913 1287382 1 0 alignment_overlap=21 coverage_minus=2 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=8.168e-02 junction_possible_overlap_registers=272 key=NC_000913__1287262__-1__NC_000913__1287361__1__21____300__300__0__0 max_left=157 max_left_minus=157 max_left_plus=11 max_min_left=20 max_min_left_minus=20 max_min_left_plus=11 max_min_right=122 max_min_right_minus=122 max_min_right_plus=0 max_pos_hash_score=546 max_right=265 max_right_minus=259 max_right_plus=265 neg_log10_pos_hash_p_value=10.2 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=8.168e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.69 side_1_overlap=21 side_1_possible_overlap_registers=293 side_1_read_count=85 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.49 side_2_overlap=0 side_2_possible_overlap_registers=272 side_2_read_count=56 side_2_redundant=0 total_non_overlap_reads=5 JC 109 . NC_000913 1287329 -1 NC_000913 1287624 1 0 alignment_overlap=87 coverage_minus=7 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.728e-01 junction_possible_overlap_registers=206 key=NC_000913__1287329__-1__NC_000913__1287537__1__87____300__300__0__0 max_left=158 max_left_minus=158 max_left_plus=98 max_min_left=98 max_min_left_minus=63 max_min_left_plus=98 max_min_right=61 max_min_right_minus=61 max_min_right_plus=0 max_pos_hash_score=414 max_right=209 max_right_minus=179 max_right_plus=209 neg_log10_pos_hash_p_value=5.3 new_junction_coverage=0.13 new_junction_read_count=11 polymorphism_frequency=1.728e-01 pos_hash_score=11 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.59 side_1_overlap=87 side_1_possible_overlap_registers=293 side_1_read_count=73 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.62 side_2_overlap=0 side_2_possible_overlap_registers=206 side_2_read_count=54 side_2_redundant=0 total_non_overlap_reads=11 JC 110 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=95 coverage_plus=75 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=289 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0 max_left=295 max_left_minus=295 max_left_plus=294 max_min_left=146 max_min_left_minus=139 max_min_left_plus=146 max_min_right=147 max_min_right_minus=144 max_min_right_plus=147 max_pos_hash_score=580 max_right=295 max_right_minus=292 max_right_plus=295 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.42 new_junction_read_count=173 polymorphism_frequency=9.972e-01 pos_hash_score=84 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.01 side_1_overlap=4 side_1_possible_overlap_registers=293 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=170 JC 111 . NC_000913 1411899 1 NC_000913 1434958 -1 0 alignment_overlap=26 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=3.753e-02 junction_possible_overlap_registers=267 key=NC_000913__1411899__1__NC_000913__1434984__-1__26____300__300__0__0 max_left=167 max_left_minus=167 max_left_plus=167 max_min_left=43 max_min_left_minus=43 max_min_left_plus=43 max_min_right=107 max_min_right_minus=107 max_min_right_plus=107 max_pos_hash_score=536 max_right=107 max_right_minus=107 max_right_plus=107 neg_log10_pos_hash_p_value=10.1 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=3.753e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.20 side_1_overlap=26 side_1_possible_overlap_registers=293 side_1_read_count=149 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.53 side_2_overlap=0 side_2_possible_overlap_registers=267 side_2_read_count=172 side_2_redundant=0 total_non_overlap_reads=6 JC 112 . NC_000913 1978502 -1 NC_000913 1979279 1 0 alignment_overlap=8 coverage_minus=81 coverage_plus=70 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=285 key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0 max_left=286 max_left_minus=285 max_left_plus=286 max_min_left=144 max_min_left_minus=132 max_min_left_plus=144 max_min_right=143 max_min_right_minus=143 max_min_right_plus=140 max_pos_hash_score=572 max_right=291 max_right_minus=291 max_right_plus=286 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.27 new_junction_read_count=153 polymorphism_frequency=1.000e+00 pos_hash_score=82 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=293 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=151 JC 113 . NC_000913 2357730 -1 NC_000913 2357926 1 0 alignment_overlap=40 coverage_minus=5 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=6.989e-02 junction_possible_overlap_registers=253 key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0 max_left=216 max_left_minus=216 max_left_plus=206 max_min_left=51 max_min_left_minus=51 max_min_left_plus=8 max_min_right=94 max_min_right_minus=77 max_min_right_plus=94 max_pos_hash_score=508 max_right=208 max_right_minus=208 max_right_plus=197 neg_log10_pos_hash_p_value=7.7 new_junction_coverage=0.09 new_junction_read_count=10 polymorphism_frequency=6.989e-02 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.29 side_1_overlap=40 side_1_possible_overlap_registers=293 side_1_read_count=160 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.20 side_2_overlap=0 side_2_possible_overlap_registers=253 side_2_read_count=128 side_2_redundant=0 total_non_overlap_reads=10 JC 114 . NC_000913 2518116 -1 NC_000913 2518232 1 0 alignment_overlap=81 coverage_minus=4 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=9.948e-02 junction_possible_overlap_registers=212 key=NC_000913__2518116__-1__NC_000913__2518151__1__81____300__300__0__0 max_left=201 max_left_minus=201 max_left_plus=135 max_min_left=69 max_min_left_minus=69 max_min_left_plus=14 max_min_right=84 max_min_right_minus=54 max_min_right_plus=84 max_pos_hash_score=426 max_right=205 max_right_minus=149 max_right_plus=205 neg_log10_pos_hash_p_value=7.0 new_junction_coverage=0.08 new_junction_read_count=7 polymorphism_frequency=9.948e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.77 side_1_overlap=81 side_1_possible_overlap_registers=293 side_1_read_count=95 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.65 side_2_overlap=0 side_2_possible_overlap_registers=212 side_2_read_count=58 side_2_redundant=0 total_non_overlap_reads=7 JC 115 . NC_000913 2521006 -1 NC_000913 2521127 1 0 alignment_overlap=76 coverage_minus=2 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=7.645e-02 junction_possible_overlap_registers=217 key=NC_000913__2521006__-1__NC_000913__2521051__1__76____300__300__0__0 max_left=211 max_left_minus=211 max_left_plus=140 max_min_left=108 max_min_left_minus=0 max_min_left_plus=108 max_min_right=84 max_min_right_minus=29 max_min_right_plus=84 max_pos_hash_score=436 max_right=148 max_right_minus=29 max_right_plus=148 neg_log10_pos_hash_p_value=8.2 new_junction_coverage=0.08 new_junction_read_count=7 polymorphism_frequency=7.645e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.96 side_1_overlap=76 side_1_possible_overlap_registers=293 side_1_read_count=119 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.88 side_2_overlap=0 side_2_possible_overlap_registers=217 side_2_read_count=81 side_2_redundant=0 total_non_overlap_reads=6 JC 116 . NC_000913 2568222 -1 NC_000913 2568323 1 0 alignment_overlap=22 coverage_minus=4 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=6.138e-02 junction_possible_overlap_registers=271 key=NC_000913__2568222__-1__NC_000913__2568301__1__22____300__300__0__0 max_left=253 max_left_minus=253 max_left_plus=105 max_min_left=105 max_min_left_minus=0 max_min_left_plus=105 max_min_right=122 max_min_right_minus=122 max_min_right_plus=0 max_pos_hash_score=544 max_right=172 max_right_minus=122 max_right_plus=172 neg_log10_pos_hash_p_value=10.2 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=6.138e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.81 side_1_overlap=22 side_1_possible_overlap_registers=293 side_1_read_count=100 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.80 side_2_overlap=0 side_2_possible_overlap_registers=271 side_2_read_count=91 side_2_redundant=0 total_non_overlap_reads=5 JC 117 . NC_000913 2653389 -1 NC_000913 2653716 1 0 alignment_overlap=5 coverage_minus=2 coverage_plus=6 flanking_left=300 flanking_right=300 frequency=6.152e-02 junction_possible_overlap_registers=288 key=NC_000913__2653389__-1__NC_000913__2653711__1__5____300__300__0__0 max_left=147 max_left_minus=109 max_left_plus=147 max_min_left=109 max_min_left_minus=109 max_min_left_plus=101 max_min_right=134 max_min_right_minus=0 max_min_right_plus=134 max_pos_hash_score=578 max_right=279 max_right_minus=201 max_right_plus=279 neg_log10_pos_hash_p_value=9.0 new_junction_coverage=0.07 new_junction_read_count=8 polymorphism_frequency=6.152e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.91 side_1_overlap=5 side_1_possible_overlap_registers=293 side_1_read_count=113 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.09 side_2_overlap=0 side_2_possible_overlap_registers=288 side_2_read_count=133 side_2_redundant=0 total_non_overlap_reads=8 JC 118 . NC_000913 2653419 -1 NC_000913 2653746 1 0 alignment_overlap=25 coverage_minus=6 coverage_plus=7 flanking_left=300 flanking_right=300 frequency=1.063e-01 junction_possible_overlap_registers=268 key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0 max_left=217 max_left_minus=217 max_left_plus=217 max_min_left=111 max_min_left_minus=104 max_min_left_plus=111 max_min_right=104 max_min_right_minus=91 max_min_right_plus=104 max_pos_hash_score=538 max_right=246 max_right_minus=198 max_right_plus=246 neg_log10_pos_hash_p_value=6.9 new_junction_coverage=0.11 new_junction_read_count=13 polymorphism_frequency=1.063e-01 pos_hash_score=11 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.90 side_1_overlap=25 side_1_possible_overlap_registers=293 side_1_read_count=111 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.03 side_2_overlap=0 side_2_possible_overlap_registers=268 side_2_read_count=117 side_2_redundant=0 total_non_overlap_reads=13 JC 119 . NC_000913 2653549 -1 NC_000913 2653872 1 0 alignment_overlap=16 coverage_minus=5 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=7.253e-02 junction_possible_overlap_registers=277 key=NC_000913__2653549__-1__NC_000913__2653856__1__16____300__300__0__0 max_left=260 max_left_minus=260 max_left_plus=244 max_min_left=129 max_min_left_minus=129 max_min_left_plus=27 max_min_right=107 max_min_right_minus=81 max_min_right_plus=107 max_pos_hash_score=556 max_right=183 max_right_minus=183 max_right_plus=183 neg_log10_pos_hash_p_value=7.8 new_junction_coverage=0.08 new_junction_read_count=9 polymorphism_frequency=7.253e-02 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.01 side_1_overlap=16 side_1_possible_overlap_registers=293 side_1_read_count=125 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.96 side_2_overlap=0 side_2_possible_overlap_registers=277 side_2_read_count=112 side_2_redundant=0 total_non_overlap_reads=9 JC 120 . NC_000913 2817942 -1 NC_000913 2818492 1 0 alignment_overlap=20 coverage_minus=3 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=6.762e-02 junction_possible_overlap_registers=273 key=NC_000913__2817942__-1__NC_000913__2818472__1__20____300__300__0__0 max_left=275 max_left_minus=275 max_left_plus=241 max_min_left=23 max_min_left_minus=23 max_min_left_plus=0 max_min_right=115 max_min_right_minus=7 max_min_right_plus=115 max_pos_hash_score=548 max_right=257 max_right_minus=257 max_right_plus=115 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.06 new_junction_read_count=7 polymorphism_frequency=6.762e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.82 side_1_overlap=20 side_1_possible_overlap_registers=293 side_1_read_count=102 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.85 side_2_overlap=0 side_2_possible_overlap_registers=273 side_2_read_count=98 side_2_redundant=0 total_non_overlap_reads=7 JC 121 . NC_000913 2877772 -1 NC_000913 2878078 1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.860e-02 junction_possible_overlap_registers=281 key=NC_000913__2877772__-1__NC_000913__2878066__1__12____300__300__0__0 max_left=224 max_left_minus=224 max_left_plus=120 max_min_left=120 max_min_left_minus=0 max_min_left_plus=120 max_min_right=82 max_min_right_minus=82 max_min_right_plus=82 max_pos_hash_score=564 max_right=165 max_right_minus=82 max_right_plus=165 neg_log10_pos_hash_p_value=10.5 new_junction_coverage=0.04 new_junction_read_count=5 polymorphism_frequency=5.860e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.66 side_1_overlap=12 side_1_possible_overlap_registers=293 side_1_read_count=82 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.69 side_2_overlap=0 side_2_possible_overlap_registers=281 side_2_read_count=82 side_2_redundant=0 total_non_overlap_reads=4 JC 122 . NC_000913 2947467 -1 NC_000913 2947688 1 0 alignment_overlap=83 coverage_minus=4 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1.055e-01 junction_possible_overlap_registers=210 key=NC_000913__2947467__-1__NC_000913__2947605__1__83____300__300__0__0 max_left=135 max_left_minus=135 max_left_plus=76 max_min_left=76 max_min_left_minus=18 max_min_left_plus=76 max_min_right=86 max_min_right_minus=86 max_min_right_plus=1 max_pos_hash_score=422 max_right=199 max_right_minus=199 max_right_plus=141 neg_log10_pos_hash_p_value=7.0 new_junction_coverage=0.09 new_junction_read_count=8 polymorphism_frequency=1.055e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.75 side_1_overlap=83 side_1_possible_overlap_registers=293 side_1_read_count=93 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.78 side_2_overlap=0 side_2_possible_overlap_registers=210 side_2_read_count=69 side_2_redundant=0 total_non_overlap_reads=7 JC 123 . NC_000913 3012426 -1 NC_000913 3012607 1 0 alignment_overlap=28 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.308e-02 junction_possible_overlap_registers=265 key=NC_000913__3012426__-1__NC_000913__3012579__1__28____300__300__0__0 max_left=271 max_left_minus=271 max_left_plus=219 max_min_left=107 max_min_left_minus=107 max_min_left_plus=71 max_min_right=53 max_min_right_minus=1 max_min_right_plus=53 max_pos_hash_score=532 max_right=179 max_right_minus=165 max_right_plus=179 neg_log10_pos_hash_p_value=10.1 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=3.308e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.03 side_1_overlap=28 side_1_possible_overlap_registers=293 side_1_read_count=127 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.06 side_2_overlap=0 side_2_possible_overlap_registers=265 side_2_read_count=119 side_2_redundant=0 total_non_overlap_reads=4 JC 124 . NC_000913 3084977 -1 NC_000913 3085260 1 0 alignment_overlap=11 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.682e-02 junction_possible_overlap_registers=282 key=NC_000913__3084977__-1__NC_000913__3085249__1__11____300__300__0__0 max_left=174 max_left_minus=174 max_left_plus=130 max_min_left=130 max_min_left_minus=0 max_min_left_plus=130 max_min_right=123 max_min_right_minus=123 max_min_right_plus=0 max_pos_hash_score=566 max_right=159 max_right_minus=123 max_right_plus=159 neg_log10_pos_hash_p_value=11.2 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.682e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.71 side_1_overlap=11 side_1_possible_overlap_registers=293 side_1_read_count=88 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.12 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=133 side_2_redundant=0 total_non_overlap_reads=3 JC 125 . NC_000913 3469019 -1 NC_000913 3469323 1 0 alignment_overlap=2 coverage_minus=6 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.244e-02 junction_possible_overlap_registers=291 key=NC_000913__3469019__-1__NC_000913__3469321__1__2____300__300__0__0 max_left=186 max_left_minus=186 max_left_plus=132 max_min_left=93 max_min_left_minus=93 max_min_left_plus=0 max_min_right=118 max_min_right_minus=118 max_min_right_plus=118 max_pos_hash_score=584 max_right=202 max_right_minus=202 max_right_plus=118 neg_log10_pos_hash_p_value=9.5 new_junction_coverage=0.06 new_junction_read_count=7 polymorphism_frequency=4.244e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.31 side_1_overlap=2 side_1_possible_overlap_registers=293 side_1_read_count=162 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.26 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=155 side_2_redundant=0 total_non_overlap_reads=7 JC 126 . NC_000913 3648146 -1 NC_000913 3648378 1 0 alignment_overlap=58 coverage_minus=10 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.084e-01 junction_possible_overlap_registers=235 key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0 max_left=222 max_left_minus=222 max_left_plus=161 max_min_left=116 max_min_left_minus=102 max_min_left_plus=116 max_min_right=81 max_min_right_minus=55 max_min_right_plus=81 max_pos_hash_score=472 max_right=239 max_right_minus=239 max_right_plus=210 neg_log10_pos_hash_p_value=5.7 new_junction_coverage=0.14 new_junction_read_count=14 polymorphism_frequency=1.084e-01 pos_hash_score=12 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.13 side_1_overlap=58 side_1_possible_overlap_registers=293 side_1_read_count=140 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.19 side_2_overlap=0 side_2_possible_overlap_registers=235 side_2_read_count=118 side_2_redundant=0 total_non_overlap_reads=14 JC 127 . NC_000913 4094350 -1 NC_000913 4094719 1 0 alignment_overlap=41 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.527e-02 junction_possible_overlap_registers=252 key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0 max_left=63 max_left_minus=63 max_left_plus=32 max_min_left=53 max_min_left_minus=53 max_min_left_plus=32 max_min_right=20 max_min_right_minus=20 max_min_right_plus=0 max_pos_hash_score=506 max_right=75 max_right_minus=74 max_right_plus=75 neg_log10_pos_hash_p_value=10.4 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.527e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.74 side_1_overlap=41 side_1_possible_overlap_registers=293 side_1_read_count=92 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.80 side_2_overlap=0 side_2_possible_overlap_registers=252 side_2_read_count=85 side_2_redundant=0 total_non_overlap_reads=3 JC 128 . NC_000913 4226120 -1 NC_000913 4226415 1 0 alignment_overlap=2 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=2.362e-02 junction_possible_overlap_registers=291 key=NC_000913__4226120__-1__NC_000913__4226413__1__2____300__300__0__0 max_left=224 max_left_minus=224 max_left_plus=203 max_min_left=100 max_min_left_minus=0 max_min_left_plus=100 max_min_right=95 max_min_right_minus=74 max_min_right_plus=95 max_pos_hash_score=584 max_right=135 max_right_minus=74 max_right_plus=135 neg_log10_pos_hash_p_value=11.4 new_junction_coverage=0.02 new_junction_read_count=3 polymorphism_frequency=2.362e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.12 side_1_overlap=2 side_1_possible_overlap_registers=293 side_1_read_count=139 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.90 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=110 side_2_redundant=0 total_non_overlap_reads=3 JC 129 . NC_000913 4392437 -1 NC_000913 4392661 1 0 alignment_overlap=78 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.001e-02 junction_possible_overlap_registers=215 key=NC_000913__4392437__-1__NC_000913__4392583__1__78____300__300__0__0 max_left=126 max_left_minus=86 max_left_plus=126 max_min_left=86 max_min_left_minus=86 max_min_left_plus=0 max_min_right=96 max_min_right_minus=0 max_min_right_plus=96 max_pos_hash_score=432 max_right=136 max_right_minus=136 max_right_plus=96 neg_log10_pos_hash_p_value=9.4 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.001e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.91 side_1_overlap=78 side_1_possible_overlap_registers=293 side_1_read_count=113 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.22 side_2_overlap=0 side_2_possible_overlap_registers=215 side_2_read_count=111 side_2_redundant=0 total_non_overlap_reads=3 JC 130 . NC_000913 4464478 -1 NC_000913 4464780 1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=2.911e-02 junction_possible_overlap_registers=281 key=NC_000913__4464478__-1__NC_000913__4464768__1__12____300__300__0__0 max_left=157 max_left_minus=157 max_left_plus=136 max_min_left=136 max_min_left_minus=0 max_min_left_plus=136 max_min_right=131 max_min_right_minus=131 max_min_right_plus=92 max_pos_hash_score=564 max_right=152 max_right_minus=131 max_right_plus=152 neg_log10_pos_hash_p_value=10.5 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=2.911e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.02 side_1_overlap=12 side_1_possible_overlap_registers=293 side_1_read_count=126 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.23 side_2_overlap=0 side_2_possible_overlap_registers=281 side_2_read_count=146 side_2_redundant=0 total_non_overlap_reads=4 JC 131 . NC_000913 4542682 1 NC_000913 4542996 1 0 alignment_overlap=9 coverage_minus=5 coverage_plus=8 flanking_left=300 flanking_right=300 frequency=7.656e-02 junction_possible_overlap_registers=284 key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0 max_left=289 max_left_minus=284 max_left_plus=289 max_min_left=122 max_min_left_minus=87 max_min_left_plus=122 max_min_right=91 max_min_right_minus=91 max_min_right_plus=38 max_pos_hash_score=570 max_right=290 max_right_minus=204 max_right_plus=290 neg_log10_pos_hash_p_value=6.5 new_junction_coverage=0.11 new_junction_read_count=13 polymorphism_frequency=7.656e-02 pos_hash_score=13 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.42 side_1_overlap=9 side_1_possible_overlap_registers=293 side_1_read_count=176 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.19 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=143 side_2_redundant=0 total_non_overlap_reads=13 JC 132 . NC_000913 4542690 -1 NC_000913 4542986 -1 0 alignment_overlap=9 coverage_minus=5 coverage_plus=11 flanking_left=300 flanking_right=300 frequency=8.959e-02 junction_possible_overlap_registers=284 key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0 max_left=288 max_left_minus=280 max_left_plus=288 max_min_left=139 max_min_left_minus=50 max_min_left_plus=139 max_min_right=140 max_min_right_minus=140 max_min_right_plus=95 max_pos_hash_score=570 max_right=280 max_right_minus=280 max_right_plus=201 neg_log10_pos_hash_p_value=6.2 new_junction_coverage=0.13 new_junction_read_count=16 polymorphism_frequency=8.959e-02 pos_hash_score=14 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.53 side_1_overlap=9 side_1_possible_overlap_registers=293 side_1_read_count=189 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.18 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=142 side_2_redundant=0 total_non_overlap_reads=16 JC 133 . NC_000913 4606166 -1 NC_000913 4606403 1 0 alignment_overlap=89 coverage_minus=4 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.107e-01 junction_possible_overlap_registers=204 key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0 max_left=159 max_left_minus=159 max_left_plus=140 max_min_left=99 max_min_left_minus=99 max_min_left_plus=42 max_min_right=74 max_min_right_minus=74 max_min_right_plus=71 max_pos_hash_score=410 max_right=179 max_right_minus=117 max_right_plus=179 neg_log10_pos_hash_p_value=6.4 new_junction_coverage=0.10 new_junction_read_count=9 polymorphism_frequency=1.107e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.78 side_1_overlap=89 side_1_possible_overlap_registers=293 side_1_read_count=97 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.89 side_2_overlap=0 side_2_possible_overlap_registers=204 side_2_read_count=77 side_2_redundant=0 total_non_overlap_reads=8 UN 134 . NC_000913 15663 16454 UN 135 . NC_000913 16456 16456 UN 136 . NC_000913 16458 16458 UN 137 . NC_000913 20082 20285 UN 138 . NC_000913 224019 224485 UN 139 . NC_000913 225178 225317 UN 140 . NC_000913 227260 228412 UN 141 . NC_000913 257908 258683 UN 142 . NC_000913 270791 271007 UN 143 . NC_000913 274248 274863 UN 144 . NC_000913 279426 279648 UN 145 . NC_000913 290916 290916 UN 146 . NC_000913 290918 291132 UN 147 . NC_000913 315504 316219 UN 148 . NC_000913 381526 381526 UN 149 . NC_000913 381533 382324 UN 150 . NC_000913 391996 392690 UN 151 . NC_000913 392694 392694 UN 152 . NC_000913 392696 392696 UN 153 . NC_000913 526130 526130 UN 154 . NC_000913 526139 526139 UN 155 . NC_000913 526143 526143 UN 156 . NC_000913 526146 526461 UN 157 . NC_000913 567061 567061 UN 158 . NC_000913 567065 567770 UN 159 . NC_000913 574870 575505 UN 160 . NC_000913 608279 608279 UN 161 . NC_000913 608283 609072 UN 162 . NC_000913 688129 688765 UN 163 . NC_000913 1094509 1095233 UN 164 . NC_000913 1299499 1300697 UN 165 . NC_000913 1396331 1396958 UN 166 . NC_000913 1468182 1468967 UN 167 . NC_000913 1468972 1468972 UN 168 . NC_000913 1469567 1469567 UN 169 . NC_000913 1469571 1470228 UN 170 . NC_000913 1528557 1528922 UN 171 . NC_000913 1528924 1528928 UN 172 . NC_000913 1651105 1651105 UN 173 . NC_000913 1651109 1651109 UN 174 . NC_000913 1651111 1651111 UN 175 . NC_000913 1651113 1651270 UN 176 . NC_000913 1978503 1979278 UN 177 . NC_000913 2067008 2067036 UN 178 . NC_000913 2067038 2067038 UN 179 . NC_000913 2069196 2069985 UN 180 . NC_000913 2102019 2102019 UN 181 . NC_000913 2102029 2102657 UN 182 . NC_000913 2170451 2171141 UN 183 . NC_000913 2289193 2289827 UN 184 . NC_000913 2289831 2289831 UN 185 . NC_000913 2514553 2515350 UN 186 . NC_000913 2515354 2515354 UN 187 . NC_000913 2726330 2728977 UN 188 . NC_000913 2729853 2730693 UN 189 . NC_000913 2996621 2996621 UN 190 . NC_000913 2996624 2997425 UN 191 . NC_000913 3130424 3131067 UN 192 . NC_000913 3186348 3186349 UN 193 . NC_000913 3186357 3186357 UN 194 . NC_000913 3186359 3187160 UN 195 . NC_000913 3365836 3366466 UN 196 . NC_000913 3366468 3366470 UN 197 . NC_000913 3423935 3424378 UN 198 . NC_000913 3424931 3424931 UN 199 . NC_000913 3424933 3426578 UN 200 . NC_000913 3426582 3426582 UN 201 . NC_000913 3426586 3426586 UN 202 . NC_000913 3426599 3426599 UN 203 . NC_000913 3427216 3428296 UN 204 . NC_000913 3583704 3583910 UN 205 . NC_000913 3619537 3620808 UN 206 . NC_000913 3620810 3620813 UN 207 . NC_000913 3620815 3620816 UN 208 . NC_000913 3620818 3620822 UN 209 . NC_000913 3620825 3620826 UN 210 . NC_000913 3620828 3620829 UN 211 . NC_000913 3621350 3622022 UN 212 . NC_000913 3622025 3622027 UN 213 . NC_000913 3622030 3622030 UN 214 . NC_000913 3622032 3622032 UN 215 . NC_000913 3622034 3622034 UN 216 . NC_000913 3622036 3622036 UN 217 . NC_000913 3622046 3622046 UN 218 . NC_000913 3622050 3622050 UN 219 . NC_000913 3622054 3622054 UN 220 . NC_000913 3652308 3652944 UN 221 . NC_000913 3762523 3763798 UN 222 . NC_000913 3764327 3765031 UN 223 . NC_000913 3765034 3765034 UN 224 . NC_000913 3765037 3765037 UN 225 . NC_000913 3765042 3765042 UN 226 . NC_000913 3765045 3765045 UN 227 . NC_000913 3942320 3943140 UN 228 . NC_000913 3944328 3945291 UN 229 . NC_000913 4035443 4035444 UN 230 . NC_000913 4035451 4035465 UN 231 . NC_000913 4035468 4035471 UN 232 . NC_000913 4035983 4036828 UN 233 . NC_000913 4038106 4038402 UN 234 . NC_000913 4039012 4039099 UN 235 . NC_000913 4039106 4039106 UN 236 . NC_000913 4039676 4040326 UN 237 . NC_000913 4166571 4166575 UN 238 . NC_000913 4166578 4166580 UN 239 . NC_000913 4166582 4166583 UN 240 . NC_000913 4166585 4166596 UN 241 . NC_000913 4166598 4166598 UN 242 . NC_000913 4166600 4166603 UN 243 . NC_000913 4166912 4167943 UN 244 . NC_000913 4168823 4171361 UN 245 . NC_000913 4176824 4176827 UN 246 . NC_000913 4176832 4176832 UN 247 . NC_000913 4208395 4209469 UN 248 . NC_000913 4210287 4212845 UN 249 . NC_000913 4212847 4212847 UN 250 . NC_000913 4498470 4499256 UN 251 . NC_000913 4507747 4508425 UN 252 . NC_000913 4508427 4508429