#=GENOME_DIFF	1.0
#=CREATED	15:43:25 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8656_S19_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8656_S19_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8656_S19_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8656_S19_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8656_S19_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	446505044
#=CONVERTED-READS	1514222
#=INPUT-BASES	446589003
#=INPUT-READS	1514508
#=MAPPED-BASES	431305698
#=MAPPED-READS	1463658
SNP	1	70	NC_000913	100946	C
SNP	2	73	NC_000913	246747	T
DEL	3	200,208	NC_000913	257908	776
SNP	4	74	NC_000913	302842	A
SNP	5	75	NC_000913	303599	T
SNP	6	76	NC_000913	313543	A
SNP	7	77	NC_000913	339935	T
SNP	8	78	NC_000913	339958	A
SNP	9	79	NC_000913	366339	T
SUB	10	80,81	NC_000913	480295	2	AA
MOB	11	209,210	NC_000913	788785	IS1	1	9
SNP	12	89	NC_000913	1148972	T
SNP	13	91	NC_000913	1169836	G
SNP	14	92	NC_000913	1189980	G
MOB	15	239,241	NC_000913	1293196	IS5	-1	4	before=16
MOB	16	238,240	NC_000913	1293196	IS5	1	4	before=15
DEL	17	202,242	NC_000913	1299499	1199
SNP	18	94	NC_000913	1301992	T
SNP	19	95	NC_000913	1306736	G
SNP	20	98	NC_000913	1337394	G
SNP	21	99	NC_000913	1339315	T
SNP	22	101	NC_000913	1358859	C
MOB	23	245,246	NC_000913	1399590	IS5	1	4
MOB	24	226,228	NC_000913	1586112	IS3	-1	3
MOB	25	243,250	NC_000913	1633132	IS5	1	4
SNP	26	108	NC_000913	1643679	T
SNP	27	109	NC_000913	1652331	C
SNP	28	110	NC_000913	1829887	A
SNP	29	112	NC_000913	1894839	C
SNP	30	117	NC_000913	2040433	A
SNP	31	119	NC_000913	2044642	C
DEL	32	120	NC_000913	2111259	1
DEL	33	123,124	NC_000913	2173363	2
SNP	34	125	NC_000913	2173448	T
SNP	35	127	NC_000913	2237235	T
SNP	36	129	NC_000913	2331496	A
DEL	37	204,267	NC_000913	2558699	6790
SNP	38	134	NC_000913	2587112	T
SNP	39	138	NC_000913	2867455	A
SNP	40	139	NC_000913	2926772	A
DEL	41	148	NC_000913	3207549	1
SNP	42	150	NC_000913	3329743	T
MOB	43	275,276	NC_000913	3350556	IS1	-1	8
SNP	44	151	NC_000913	3388041	G
MOB	45	270,272	NC_000913	3485997	IS2	1	5
SNP	46	156	NC_000913	3560443	G
INS	47	157	NC_000913	3560455	G
SNP	48	161	NC_000913	3707883	A
SNP	49	162	NC_000913	3707947	A
SNP	50	164	NC_000913	3725176	G
INS	51	167	NC_000913	3815883	C
SNP	52	176	NC_000913	4143377	T
SNP	53	177	NC_000913	4193996	G
DEL	54	179	NC_000913	4212973	1
SNP	55	181	NC_000913	4223638	C
SUB	56	182,183	NC_000913	4293781	2	AT
INS	57	185,186	NC_000913	4296381	GC
SNP	58	187	NC_000913	4325644	T
SNP	59	190	NC_000913	4400254	T
SNP	60	193	NC_000913	4473900	T
SNP	61	194	NC_000913	4475493	C
SNP	62	195	NC_000913	4510238	G
SNP	63	196	NC_000913	4532409	G
SNP	64	197	NC_000913	4546601	T
SNP	65	198	NC_000913	4636925	C
SNP	66	199	NC_000913	4638240	A
RA	67	.	NC_000913	36	0	C	A	bias_e_value=1.06469	bias_p_value=2.29378e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.8	fisher_strand_p_value=1.19187e-08	frequency=2.441e-01	ks_quality_p_value=1	major_base=C	major_cov=61/35	major_frequency=7.559e-01	minor_base=A	minor_cov=2/29	new_cov=2/29	polymorphism_frequency=2.441e-01	polymorphism_score=30.5	prediction=polymorphism	ref_cov=61/35	total_cov=63/64
RA	68	.	NC_000913	58065	0	C	A	bias_e_value=0.00337056	bias_p_value=7.26156e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.7	fisher_strand_p_value=2.87325e-11	frequency=3.871e-01	ks_quality_p_value=1	major_base=C	major_cov=21/36	major_frequency=6.129e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.871e-01	polymorphism_score=22.8	prediction=polymorphism	ref_cov=21/36	total_cov=57/36
RA	69	.	NC_000913	88565	0	G	T	bias_e_value=4071.09	bias_p_value=0.000877079	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.2	fisher_strand_p_value=8.45079e-05	frequency=2.195e-01	ks_quality_p_value=1	major_base=G	major_cov=37/27	major_frequency=7.805e-01	minor_base=T	minor_cov=1/17	new_cov=1/17	polymorphism_frequency=2.195e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=37/27	total_cov=38/44
RA	70	.	NC_000913	100946	0	T	C	bias_e_value=2155660	bias_p_value=0.464416	consensus_score=199.6	fisher_strand_p_value=0.184681	frequency=1	ks_quality_p_value=0.899808	major_base=C	major_cov=35/29	major_frequency=8.649e-01	minor_base=T	minor_cov=3/7	new_cov=35/29	polymorphism_frequency=8.649e-01	polymorphism_score=24.3	prediction=consensus	ref_cov=3/7	total_cov=39/36
RA	71	.	NC_000913	140395	0	G	T	bias_e_value=1413360	bias_p_value=0.304496	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.9	fisher_strand_p_value=0.0890802	frequency=2.019e-01	ks_quality_p_value=1	major_base=G	major_cov=46/37	major_frequency=7.981e-01	minor_base=T	minor_cov=7/14	new_cov=7/14	polymorphism_frequency=2.019e-01	polymorphism_score=43.2	prediction=polymorphism	ref_cov=46/37	total_cov=53/51
RA	72	.	NC_000913	158432	0	G	A	bias_e_value=776609	bias_p_value=0.167313	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.6	fisher_strand_p_value=0.0651047	frequency=2.375e-01	ks_quality_p_value=0.607526	major_base=G	major_cov=29/32	major_frequency=7.625e-01	minor_base=A	minor_cov=14/5	new_cov=14/5	polymorphism_frequency=2.375e-01	polymorphism_score=54.9	prediction=polymorphism	ref_cov=29/32	total_cov=43/38
RA	73	.	NC_000913	246747	0	G	T	consensus_score=407.5	frequency=1	major_base=T	major_cov=56/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/55
RA	74	.	NC_000913	302842	0	T	A	consensus_score=64.5	frequency=1	major_base=A	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	75	.	NC_000913	303599	0	C	T	consensus_score=108.8	frequency=1	major_base=T	major_cov=14/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/19
RA	76	.	NC_000913	313543	0	G	A	consensus_score=105.1	frequency=1	major_base=A	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	77	.	NC_000913	339935	0	C	T	consensus_score=12.0	frequency=1	major_base=T	major_cov=2/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/5
RA	78	.	NC_000913	339958	0	G	A	consensus_score=20.3	frequency=1	major_base=A	major_cov=2/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/6
RA	79	.	NC_000913	366339	0	C	T	bias_e_value=1433800	bias_p_value=0.3089	consensus_score=28.0	fisher_strand_p_value=0.0909091	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/2	major_frequency=8.333e-01	minor_base=G	minor_cov=0/2	new_cov=8/2	polymorphism_frequency=8.333e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/4
RA	80	.	NC_000913	480295	0	G	A	bias_e_value=3607140	bias_p_value=0.777125	consensus_score=496.6	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=55/80	major_frequency=9.926e-01	minor_base=G	minor_cov=1/0	new_cov=55/80	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=56/80
RA	81	.	NC_000913	480296	0	G	A	consensus_score=497.4	frequency=1	major_base=A	major_cov=56/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/80
RA	82	.	NC_000913	696470	0	C	T	bias_e_value=2539940	bias_p_value=0.547206	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.7	fisher_strand_p_value=0.216124	frequency=7.529e-01	ks_quality_p_value=1	major_base=T	major_cov=29/35	major_frequency=7.529e-01	minor_base=C	minor_cov=13/8	new_cov=29/35	polymorphism_frequency=7.529e-01	polymorphism_score=52.8	prediction=polymorphism	ref_cov=13/8	total_cov=42/43
RA	83	.	NC_000913	809217	0	C	A	bias_e_value=3782440	bias_p_value=0.814892	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.3	fisher_strand_p_value=1	frequency=2.021e-01	ks_quality_p_value=0.457036	major_base=C	major_cov=47/28	major_frequency=7.979e-01	minor_base=A	minor_cov=12/7	new_cov=12/7	polymorphism_frequency=2.021e-01	polymorphism_score=40.6	prediction=polymorphism	ref_cov=47/28	total_cov=60/35
RA	84	.	NC_000913	809218	0	A	G	bias_e_value=4542450	bias_p_value=0.978627	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.4	fisher_strand_p_value=0.800503	frequency=2.151e-01	ks_quality_p_value=1	major_base=A	major_cov=46/27	major_frequency=7.849e-01	minor_base=G	minor_cov=12/8	new_cov=12/8	polymorphism_frequency=2.151e-01	polymorphism_score=47.7	prediction=polymorphism	ref_cov=46/27	total_cov=58/35
RA	85	.	NC_000913	847955	0	G	A	bias_e_value=2.60895e-05	bias_p_value=5.62073e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.3	fisher_strand_p_value=1.85403e-13	frequency=2.735e-01	ks_quality_p_value=1	major_base=G	major_cov=60/25	major_frequency=7.265e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.735e-01	polymorphism_score=44.0	prediction=polymorphism	ref_cov=60/25	total_cov=60/58
RA	86	.	NC_000913	1001251	0	A	C	bias_e_value=3631830	bias_p_value=0.782443	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.3	fisher_strand_p_value=0.417808	frequency=7.632e-01	ks_quality_p_value=1	major_base=C	major_cov=31/27	major_frequency=7.632e-01	minor_base=A	minor_cov=12/6	new_cov=31/27	polymorphism_frequency=7.632e-01	polymorphism_score=35.1	prediction=polymorphism	ref_cov=12/6	total_cov=43/33
RA	87	.	NC_000913	1015488	0	C	A	bias_e_value=0.0367488	bias_p_value=7.91718e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.3	fisher_strand_p_value=3.47548e-10	frequency=2.643e-01	ks_quality_p_value=1	major_base=C	major_cov=49/54	major_frequency=7.357e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.643e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=49/54	total_cov=86/54
RA	88	.	NC_000913	1111727	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.3	fisher_strand_p_value=1	frequency=2.019e-01	ks_quality_p_value=1	major_base=C	major_cov=41/42	major_frequency=7.981e-01	minor_base=T	minor_cov=10/11	new_cov=10/11	polymorphism_frequency=2.019e-01	polymorphism_score=53.5	prediction=polymorphism	ref_cov=41/42	total_cov=53/53
RA	89	.	NC_000913	1148972	0	C	T	bias_e_value=1945900	bias_p_value=0.419226	consensus_score=254.9	fisher_strand_p_value=0.142027	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/50	major_frequency=8.095e-01	minor_base=C	minor_cov=12/8	new_cov=35/50	polymorphism_frequency=8.095e-01	polymorphism_score=44.9	prediction=consensus	ref_cov=12/8	total_cov=47/59
RA	90	.	NC_000913	1158345	0	G	T	bias_e_value=4602370	bias_p_value=0.991537	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.0	fisher_strand_p_value=1	frequency=2.041e-01	ks_quality_p_value=0.872749	major_base=G	major_cov=41/37	major_frequency=7.959e-01	minor_base=T	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=2.041e-01	polymorphism_score=48.4	prediction=polymorphism	ref_cov=41/37	total_cov=51/47
RA	91	.	NC_000913	1169836	0	A	G	consensus_score=339.7	frequency=1	major_base=G	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	92	.	NC_000913	1189980	0	A	G	bias_e_value=4641460	bias_p_value=0.999958	consensus_score=392.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990893	major_base=G	major_cov=47/56	major_frequency=9.904e-01	minor_base=.	minor_cov=0/1	new_cov=47/56	polymorphism_frequency=9.904e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/0	total_cov=47/57
RA	93	.	NC_000913	1287040	0	G	A	bias_e_value=3406600	bias_p_value=0.733919	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.8	fisher_strand_p_value=0.366044	frequency=7.321e-01	ks_quality_p_value=1	major_base=A	major_cov=24/17	major_frequency=7.321e-01	minor_base=G	minor_cov=11/4	new_cov=24/17	polymorphism_frequency=7.321e-01	polymorphism_score=28.9	prediction=polymorphism	ref_cov=11/4	total_cov=36/22
RA	94	.	NC_000913	1301992	0	A	T	consensus_score=289.3	frequency=1	major_base=T	major_cov=29/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/58
RA	95	.	NC_000913	1306736	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=380.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=61/38	major_frequency=9.900e-01	minor_base=T	minor_cov=1/0	new_cov=61/38	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=62/38
RA	96	.	NC_000913	1335034	0	G	T	bias_e_value=8.38157e-05	bias_p_value=1.80573e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.2	fisher_strand_p_value=6.20344e-13	frequency=2.571e-01	ks_quality_p_value=1	major_base=G	major_cov=66/38	major_frequency=7.429e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.571e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=66/38	total_cov=66/74
RA	97	.	NC_000913	1336674	0	G	A	bias_e_value=703785	bias_p_value=0.151624	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.6	fisher_strand_p_value=0.0347882	frequency=7.870e-01	ks_quality_p_value=1	major_base=A	major_cov=41/44	major_frequency=7.870e-01	minor_base=G	minor_cov=17/6	new_cov=41/44	polymorphism_frequency=7.870e-01	polymorphism_score=53.2	prediction=polymorphism	ref_cov=17/6	total_cov=58/50
RA	98	.	NC_000913	1337394	0	A	G	consensus_score=205.4	frequency=1	major_base=G	major_cov=37/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/18
RA	99	.	NC_000913	1339315	0	C	T	bias_e_value=4507760	bias_p_value=0.971155	consensus_score=337.3	fisher_strand_p_value=0.771441	frequency=1	ks_quality_p_value=0.997658	major_base=T	major_cov=47/52	major_frequency=8.839e-01	minor_base=C	minor_cov=7/6	new_cov=47/52	polymorphism_frequency=8.839e-01	polymorphism_score=24.0	prediction=consensus	ref_cov=7/6	total_cov=54/59
RA	100	.	NC_000913	1351463	0	C	A	bias_e_value=66.7485	bias_p_value=1.43803e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.9	fisher_strand_p_value=9.68537e-07	frequency=3.778e-01	ks_quality_p_value=1	major_base=C	major_cov=31/25	major_frequency=6.222e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.778e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=31/25	total_cov=65/25
RA	101	.	NC_000913	1358859	0	T	C	consensus_score=292.5	frequency=1	major_base=C	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	102	.	NC_000913	1390607	0	C	A	bias_e_value=2.0744	bias_p_value=4.46909e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.7	fisher_strand_p_value=2.4104e-08	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=57/43	major_frequency=7.143e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.857e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=57/43	total_cov=97/43
RA	103	.	NC_000913	1466432	0	A	G	bias_e_value=2587150	bias_p_value=0.557376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.1	fisher_strand_p_value=0.222831	frequency=2.407e-01	ks_quality_p_value=1	major_base=A	major_cov=21/20	major_frequency=7.593e-01	minor_base=G	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=2.407e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=21/20	total_cov=26/29
RA	104	.	NC_000913	1466438	0	T	G	bias_e_value=4507990	bias_p_value=0.971203	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.2	fisher_strand_p_value=0.769816	frequency=2.963e-01	ks_quality_p_value=1	major_base=T	major_cov=19/19	major_frequency=7.037e-01	minor_base=G	minor_cov=7/9	new_cov=7/9	polymorphism_frequency=2.963e-01	polymorphism_score=26.3	prediction=polymorphism	ref_cov=19/19	total_cov=26/28
RA	105	.	NC_000913	1502770	0	T	C	bias_e_value=0.213223	bias_p_value=4.59368e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.0	fisher_strand_p_value=2.19399e-09	frequency=2.667e-01	ks_quality_p_value=1	major_base=T	major_cov=44/22	major_frequency=7.333e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.667e-01	polymorphism_score=24.3	prediction=polymorphism	ref_cov=44/22	total_cov=44/46
RA	106	.	NC_000913	1502772	0	G	A	bias_e_value=0.599131	bias_p_value=1.29077e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.4	fisher_strand_p_value=6.50225e-09	frequency=2.556e-01	ks_quality_p_value=1	major_base=G	major_cov=44/23	major_frequency=7.444e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.556e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=44/23	total_cov=44/46
RA	107	.	NC_000913	1641002	0	T	C	bias_e_value=4122810	bias_p_value=0.888221	consensus_reject=FREQUENCY_CUTOFF	consensus_score=389.7	fisher_strand_p_value=0.616565	frequency=2.398e-01	ks_quality_p_value=0.918206	major_base=T	major_cov=83/66	major_frequency=7.602e-01	minor_base=C	minor_cov=24/23	new_cov=24/23	polymorphism_frequency=2.398e-01	polymorphism_score=130.3	prediction=polymorphism	ref_cov=83/66	total_cov=107/90
RA	108	.	NC_000913	1643679	0	A	T	consensus_score=317.1	frequency=1	major_base=T	major_cov=40/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/46
RA	109	.	NC_000913	1652331	0	T	C	consensus_score=536.0	frequency=1	major_base=C	major_cov=73/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/66
RA	110	.	NC_000913	1829887	0	G	A	bias_e_value=4124790	bias_p_value=0.888647	consensus_score=264.8	fisher_strand_p_value=0.566882	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/39	major_frequency=8.571e-01	minor_base=G	minor_cov=9/5	new_cov=45/39	polymorphism_frequency=8.571e-01	polymorphism_score=31.0	prediction=consensus	ref_cov=9/5	total_cov=54/46
RA	111	.	NC_000913	1874202	0	G	A	bias_e_value=3007370	bias_p_value=0.64791	consensus_reject=FREQUENCY_CUTOFF	consensus_score=317.7	fisher_strand_p_value=0.307199	frequency=2.027e-01	ks_quality_p_value=0.941195	major_base=G	major_cov=65/53	major_frequency=7.973e-01	minor_base=A	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.027e-01	polymorphism_score=82.6	prediction=polymorphism	ref_cov=65/53	total_cov=79/70
RA	112	.	NC_000913	1894839	0	T	C	consensus_score=341.5	frequency=1	major_base=C	major_cov=51/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/38
RA	113	.	NC_000913	1911929	0	C	T	bias_e_value=4224830	bias_p_value=0.910199	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.4	fisher_strand_p_value=0.607337	frequency=2.088e-01	ks_quality_p_value=1	major_base=C	major_cov=35/37	major_frequency=7.912e-01	minor_base=T	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=2.088e-01	polymorphism_score=52.6	prediction=polymorphism	ref_cov=35/37	total_cov=46/45
RA	114	.	NC_000913	1911930	0	C	T	bias_e_value=4188500	bias_p_value=0.902373	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.6	fisher_strand_p_value=0.606285	frequency=2.111e-01	ks_quality_p_value=0.976494	major_base=C	major_cov=34/37	major_frequency=7.889e-01	minor_base=T	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=2.111e-01	polymorphism_score=48.8	prediction=polymorphism	ref_cov=34/37	total_cov=45/45
RA	115	.	NC_000913	1915132	0	G	T	bias_e_value=3525440	bias_p_value=0.759523	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.4	fisher_strand_p_value=0.404707	frequency=2.192e-01	ks_quality_p_value=0.969706	major_base=G	major_cov=29/28	major_frequency=7.808e-01	minor_base=T	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.192e-01	polymorphism_score=39.7	prediction=polymorphism	ref_cov=29/28	total_cov=35/38
RA	116	.	NC_000913	1936634	0	C	T	bias_e_value=4641640	bias_p_value=0.999997	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.4	fisher_strand_p_value=1	frequency=2.963e-01	ks_quality_p_value=0.997566	major_base=C	major_cov=44/51	major_frequency=7.037e-01	minor_base=T	minor_cov=19/21	new_cov=19/21	polymorphism_frequency=2.963e-01	polymorphism_score=115.7	prediction=polymorphism	ref_cov=44/51	total_cov=64/72
RA	117	.	NC_000913	2040433	0	C	A	consensus_score=290.1	frequency=1	major_base=A	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	118	.	NC_000913	2042171	0	G	A	bias_e_value=4552120	bias_p_value=0.980711	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.5	fisher_strand_p_value=0.835675	frequency=7.597e-01	ks_quality_p_value=0.969428	major_base=A	major_cov=57/41	major_frequency=7.597e-01	minor_base=G	minor_cov=17/14	new_cov=57/41	polymorphism_frequency=7.597e-01	polymorphism_score=81.4	prediction=polymorphism	ref_cov=17/14	total_cov=74/55
RA	119	.	NC_000913	2044642	0	T	C	bias_e_value=2523200	bias_p_value=0.543599	consensus_score=281.9	fisher_strand_p_value=0.235953	frequency=1	ks_quality_p_value=0.906021	major_base=C	major_cov=52/49	major_frequency=8.279e-01	minor_base=T	minor_cov=14/7	new_cov=52/49	polymorphism_frequency=8.279e-01	polymorphism_score=54.8	prediction=consensus	ref_cov=14/7	total_cov=66/56
RA	120	.	NC_000913	2111259	0	G	.	bias_e_value=3825290	bias_p_value=0.824124	consensus_score=604.7	fisher_strand_p_value=0.472	frequency=1	ks_quality_p_value=0.993697	major_base=.	major_cov=58/66	major_frequency=9.920e-01	minor_base=G	minor_cov=1/0	new_cov=58/66	polymorphism_frequency=9.920e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=1/0	total_cov=59/66
RA	121	.	NC_000913	2142150	0	A	G	bias_e_value=4637240	bias_p_value=0.999049	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.0	fisher_strand_p_value=1	frequency=7.013e-01	ks_quality_p_value=0.956713	major_base=G	major_cov=36/18	major_frequency=7.013e-01	minor_base=A	minor_cov=16/7	new_cov=36/18	polymorphism_frequency=7.013e-01	polymorphism_score=67.6	prediction=polymorphism	ref_cov=16/7	total_cov=52/25
RA	122	.	NC_000913	2155880	0	C	T	bias_e_value=4630940	bias_p_value=0.997692	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.4	fisher_strand_p_value=1	frequency=3.390e-01	ks_quality_p_value=0.932827	major_base=C	major_cov=14/25	major_frequency=6.610e-01	minor_base=T	minor_cov=7/13	new_cov=7/13	polymorphism_frequency=3.390e-01	polymorphism_score=58.2	prediction=polymorphism	ref_cov=14/25	total_cov=21/38
RA	123	.	NC_000913	2173363	0	C	.	consensus_score=442.2	frequency=1	major_base=.	major_cov=37/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/54
RA	124	.	NC_000913	2173364	0	C	.	consensus_score=442.2	frequency=1	major_base=.	major_cov=37/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/54
RA	125	.	NC_000913	2173448	0	C	T	bias_e_value=3395330	bias_p_value=0.731491	consensus_score=287.2	fisher_strand_p_value=0.363636	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/56	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=31/56	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/56
RA	126	.	NC_000913	2224169	0	A	G	bias_e_value=2493540	bias_p_value=0.53721	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.6	fisher_strand_p_value=0.209663	frequency=2.041e-01	ks_quality_p_value=1	major_base=A	major_cov=33/45	major_frequency=7.959e-01	minor_base=G	minor_cov=12/8	new_cov=12/8	polymorphism_frequency=2.041e-01	polymorphism_score=42.3	prediction=polymorphism	ref_cov=33/45	total_cov=45/53
RA	127	.	NC_000913	2237235	0	C	T	bias_e_value=395462	bias_p_value=0.0851984	consensus_score=256.1	fisher_strand_p_value=0.0168102	frequency=1	ks_quality_p_value=0.995715	major_base=T	major_cov=32/51	major_frequency=8.218e-01	minor_base=C	minor_cov=13/5	new_cov=32/51	polymorphism_frequency=8.218e-01	polymorphism_score=44.4	prediction=consensus	ref_cov=13/5	total_cov=46/56
RA	128	.	NC_000913	2288418	0	G	T	bias_e_value=0.00200698	bias_p_value=4.32385e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.0	fisher_strand_p_value=1.6751e-11	frequency=2.667e-01	ks_quality_p_value=1	major_base=G	major_cov=58/41	major_frequency=7.333e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.667e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=58/41	total_cov=58/77
RA	129	.	NC_000913	2331496	0	C	A	bias_e_value=4499000	bias_p_value=0.969267	consensus_score=188.3	fisher_strand_p_value=0.799229	frequency=1	ks_quality_p_value=0.954103	major_base=A	major_cov=34/39	major_frequency=8.022e-01	minor_base=C	minor_cov=9/9	new_cov=34/39	polymorphism_frequency=8.022e-01	polymorphism_score=48.5	prediction=consensus	ref_cov=9/9	total_cov=43/48
RA	130	.	NC_000913	2427716	0	C	A	bias_e_value=0.00133134	bias_p_value=2.86824e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.9	fisher_strand_p_value=1.0931e-11	frequency=2.679e-01	ks_quality_p_value=1	major_base=C	major_cov=27/55	major_frequency=7.321e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.679e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=27/55	total_cov=57/55
RA	131	.	NC_000913	2472817	0	C	A	bias_e_value=1.39776	bias_p_value=3.01135e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.0	fisher_strand_p_value=1.58844e-08	frequency=2.907e-01	ks_quality_p_value=1	major_base=C	major_cov=23/38	major_frequency=7.093e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.907e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=23/38	total_cov=48/38
RA	132	.	NC_000913	2484827	0	C	T	bias_e_value=2907200	bias_p_value=0.62633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.6	fisher_strand_p_value=0.273498	frequency=2.269e-01	ks_quality_p_value=0.99508	major_base=C	major_cov=45/47	major_frequency=7.731e-01	minor_base=T	minor_cov=17/10	new_cov=17/10	polymorphism_frequency=2.269e-01	polymorphism_score=76.0	prediction=polymorphism	ref_cov=45/47	total_cov=64/59
RA	133	.	NC_000913	2510609	0	C	T	bias_e_value=803496	bias_p_value=0.173106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.1	fisher_strand_p_value=0.60664	frequency=2.151e-01	ks_quality_p_value=0.0681766	major_base=C	major_cov=27/46	major_frequency=7.849e-01	minor_base=T	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=2.151e-01	polymorphism_score=53.3	prediction=polymorphism	ref_cov=27/46	total_cov=43/57
RA	134	.	NC_000913	2587112	0	C	T	bias_e_value=2216260	bias_p_value=0.477472	consensus_score=243.8	fisher_strand_p_value=0.198112	frequency=1	ks_quality_p_value=0.875978	major_base=T	major_cov=49/26	major_frequency=8.621e-01	minor_base=C	minor_cov=5/7	new_cov=49/26	polymorphism_frequency=8.621e-01	polymorphism_score=29.0	prediction=consensus	ref_cov=5/7	total_cov=55/33
RA	135	.	NC_000913	2722838	0	G	T	bias_e_value=4.04822e-05	bias_p_value=8.7215e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=242.5	fisher_strand_p_value=2.92062e-13	frequency=2.810e-01	ks_quality_p_value=1	major_base=G	major_cov=59/28	major_frequency=7.190e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.810e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=59/28	total_cov=59/62
RA	136	.	NC_000913	2732992	0	G	A	bias_e_value=3422830	bias_p_value=0.737417	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.8	fisher_strand_p_value=0.376367	frequency=2.432e-01	ks_quality_p_value=0.981862	major_base=G	major_cov=37/47	major_frequency=7.568e-01	minor_base=A	minor_cov=15/12	new_cov=15/12	polymorphism_frequency=2.432e-01	polymorphism_score=77.8	prediction=polymorphism	ref_cov=37/47	total_cov=53/59
RA	137	.	NC_000913	2817197	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.8	fisher_strand_p_value=1	frequency=2.209e-01	ks_quality_p_value=1	major_base=G	major_cov=38/29	major_frequency=7.791e-01	minor_base=A	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=2.209e-01	polymorphism_score=49.0	prediction=polymorphism	ref_cov=38/29	total_cov=49/37
RA	138	.	NC_000913	2867455	0	G	A	bias_e_value=4431400	bias_p_value=0.954703	consensus_score=327.9	fisher_strand_p_value=0.74521	frequency=1	ks_quality_p_value=0.958823	major_base=A	major_cov=69/40	major_frequency=9.083e-01	minor_base=C	minor_cov=6/5	new_cov=69/40	polymorphism_frequency=9.083e-01	polymorphism_score=24.1	prediction=consensus	ref_cov=0/0	total_cov=75/45
RA	139	.	NC_000913	2926772	0	C	A	bias_e_value=3620790	bias_p_value=0.780066	consensus_score=380.6	fisher_strand_p_value=0.415094	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/62	major_frequency=9.906e-01	minor_base=C	minor_cov=1/0	new_cov=43/62	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=44/62
RA	140	.	NC_000913	2990480	0	C	A	bias_e_value=0.0011272	bias_p_value=2.42844e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.3	fisher_strand_p_value=9.19429e-12	frequency=3.008e-01	ks_quality_p_value=1	major_base=C	major_cov=40/53	major_frequency=6.992e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=3.008e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=40/53	total_cov=80/53
RA	141	.	NC_000913	3032307	0	C	T	bias_e_value=5.45671e-06	bias_p_value=1.1756e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.0	fisher_strand_p_value=3.68146e-14	frequency=2.534e-01	ks_quality_p_value=1	major_base=C	major_cov=37/72	major_frequency=7.466e-01	minor_base=T	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.534e-01	polymorphism_score=45.5	prediction=polymorphism	ref_cov=37/72	total_cov=76/72
RA	142	.	NC_000913	3054886	0	G	T	bias_e_value=0.000125455	bias_p_value=2.70281e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.5	fisher_strand_p_value=9.4205e-13	frequency=2.747e-01	ks_quality_p_value=1	major_base=G	major_cov=14/52	major_frequency=7.253e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.747e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=14/52	total_cov=39/52
RA	143	.	NC_000913	3054894	0	G	T	bias_e_value=0.219243	bias_p_value=4.72338e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.9	fisher_strand_p_value=2.25909e-09	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=15/51	major_frequency=7.586e-01	minor_base=T	minor_cov=20/1	new_cov=20/1	polymorphism_frequency=2.414e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=15/51	total_cov=35/52
RA	144	.	NC_000913	3079099	0	C	A	bias_e_value=0.00330254	bias_p_value=7.115e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=327.0	fisher_strand_p_value=2.8129e-11	frequency=2.199e-01	ks_quality_p_value=1	major_base=C	major_cov=42/68	major_frequency=7.801e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.199e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=42/68	total_cov=73/68
RA	145	.	NC_000913	3089109	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.2	fisher_strand_p_value=1	frequency=2.154e-01	ks_quality_p_value=1	major_base=A	major_cov=24/27	major_frequency=7.846e-01	minor_base=T	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=2.154e-01	polymorphism_score=50.8	prediction=polymorphism	ref_cov=24/27	total_cov=30/35
RA	146	.	NC_000913	3152494	0	G	T	bias_e_value=4504860	bias_p_value=0.970529	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.6	fisher_strand_p_value=0.814153	frequency=7.526e-01	ks_quality_p_value=0.9424	major_base=T	major_cov=40/33	major_frequency=7.526e-01	minor_base=G	minor_cov=12/12	new_cov=40/33	polymorphism_frequency=7.526e-01	polymorphism_score=63.6	prediction=polymorphism	ref_cov=12/12	total_cov=52/45
RA	147	.	NC_000913	3191376	0	G	T	bias_e_value=0.00689328	bias_p_value=1.48509e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=328.3	fisher_strand_p_value=6.05478e-11	frequency=2.308e-01	ks_quality_p_value=1	major_base=G	major_cov=66/54	major_frequency=7.692e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.308e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=66/54	total_cov=66/90
RA	148	.	NC_000913	3207549	0	G	.	bias_e_value=4641610	bias_p_value=0.999991	consensus_score=427.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995846	major_base=.	major_cov=39/53	major_frequency=9.787e-01	minor_base=G	minor_cov=1/1	new_cov=39/53	polymorphism_frequency=9.787e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=1/1	total_cov=41/54
RA	149	.	NC_000913	3226224	0	G	T	bias_e_value=0.00073207	bias_p_value=1.57718e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.5	fisher_strand_p_value=5.87165e-12	frequency=2.652e-01	ks_quality_p_value=1	major_base=G	major_cov=60/37	major_frequency=7.348e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.652e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=60/37	total_cov=60/72
RA	150	.	NC_000913	3329743	0	G	T	consensus_score=347.4	frequency=1	major_base=T	major_cov=55/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/42
RA	151	.	NC_000913	3388041	0	T	G	consensus_score=346.1	frequency=1	major_base=G	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	152	.	NC_000913	3443961	0	G	A	bias_e_value=3722510	bias_p_value=0.80198	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.3	fisher_strand_p_value=0.470644	frequency=2.130e-01	ks_quality_p_value=0.936828	major_base=G	major_cov=50/35	major_frequency=7.870e-01	minor_base=A	minor_cov=16/7	new_cov=16/7	polymorphism_frequency=2.130e-01	polymorphism_score=62.0	prediction=polymorphism	ref_cov=50/35	total_cov=66/42
RA	153	.	NC_000913	3443980	0	G	A	bias_e_value=3319430	bias_p_value=0.715139	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.5	fisher_strand_p_value=0.362094	frequency=2.101e-01	ks_quality_p_value=0.96057	major_base=G	major_cov=52/42	major_frequency=7.899e-01	minor_base=A	minor_cov=17/8	new_cov=17/8	polymorphism_frequency=2.101e-01	polymorphism_score=66.5	prediction=polymorphism	ref_cov=52/42	total_cov=70/50
RA	154	.	NC_000913	3458245	0	A	C	bias_e_value=3681020	bias_p_value=0.793042	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.3	fisher_strand_p_value=0.43016	frequency=2.111e-01	ks_quality_p_value=1	major_base=A	major_cov=23/48	major_frequency=7.889e-01	minor_base=C	minor_cov=8/11	new_cov=8/11	polymorphism_frequency=2.111e-01	polymorphism_score=47.7	prediction=polymorphism	ref_cov=23/48	total_cov=31/59
RA	155	.	NC_000913	3474425	0	T	G	bias_e_value=4011480	bias_p_value=0.864235	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.6	fisher_strand_p_value=0.584725	frequency=2.099e-01	ks_quality_p_value=0.90038	major_base=T	major_cov=35/29	major_frequency=7.901e-01	minor_base=G	minor_cov=11/6	new_cov=11/6	polymorphism_frequency=2.099e-01	polymorphism_score=48.5	prediction=polymorphism	ref_cov=35/29	total_cov=46/35
RA	156	.	NC_000913	3560443	0	C	G	bias_e_value=3477690	bias_p_value=0.749236	consensus_score=335.3	fisher_strand_p_value=0.543655	frequency=1	ks_quality_p_value=0.701933	major_base=G	major_cov=50/43	major_frequency=8.857e-01	minor_base=C	minor_cov=5/7	new_cov=50/43	polymorphism_frequency=8.857e-01	polymorphism_score=35.8	prediction=consensus	ref_cov=5/7	total_cov=55/50
RA	157	.	NC_000913	3560455	1	.	G	bias_e_value=2690850	bias_p_value=0.579718	consensus_score=383.0	fisher_strand_p_value=0.238051	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=53/49	major_frequency=9.808e-01	minor_base=.	minor_cov=0/2	new_cov=53/49	polymorphism_frequency=9.808e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=0/2	total_cov=53/51
RA	158	.	NC_000913	3560946	0	G	T	bias_e_value=0.468015	bias_p_value=1.00829e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.6	fisher_strand_p_value=5.01362e-09	frequency=2.700e-01	ks_quality_p_value=1	major_base=G	major_cov=44/29	major_frequency=7.300e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.700e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=44/29	total_cov=44/56
RA	159	.	NC_000913	3647428	0	C	T	bias_e_value=2511950	bias_p_value=0.541175	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.9	fisher_strand_p_value=0.212211	frequency=2.062e-01	ks_quality_p_value=1	major_base=C	major_cov=36/41	major_frequency=7.938e-01	minor_base=T	minor_cov=6/14	new_cov=6/14	polymorphism_frequency=2.062e-01	polymorphism_score=49.4	prediction=polymorphism	ref_cov=36/41	total_cov=42/55
RA	160	.	NC_000913	3669715	0	G	T	bias_e_value=0.788658	bias_p_value=1.69909e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.5	fisher_strand_p_value=8.68586e-09	frequency=3.107e-01	ks_quality_p_value=1	major_base=G	major_cov=38/33	major_frequency=6.893e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.107e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=38/33	total_cov=39/65
RA	161	.	NC_000913	3707883	0	G	A	bias_e_value=813944	bias_p_value=0.175357	consensus_score=314.9	fisher_strand_p_value=0.114919	frequency=1	ks_quality_p_value=0.366058	major_base=A	major_cov=68/36	major_frequency=8.387e-01	minor_base=G	minor_cov=17/3	new_cov=68/36	polymorphism_frequency=8.387e-01	polymorphism_score=50.9	prediction=consensus	ref_cov=17/3	total_cov=86/39
RA	162	.	NC_000913	3707947	0	C	A	consensus_score=457.6	frequency=1	major_base=A	major_cov=91/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=91/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=91/37
RA	163	.	NC_000913	3712407	0	G	A	bias_e_value=4166770	bias_p_value=0.897692	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.0	fisher_strand_p_value=0.801782	frequency=2.039e-01	ks_quality_p_value=0.727416	major_base=G	major_cov=32/50	major_frequency=7.961e-01	minor_base=A	minor_cov=7/14	new_cov=7/14	polymorphism_frequency=2.039e-01	polymorphism_score=59.3	prediction=polymorphism	ref_cov=32/50	total_cov=39/64
RA	164	.	NC_000913	3725176	0	T	G	consensus_score=304.8	frequency=1	major_base=G	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	165	.	NC_000913	3768435	0	C	A	bias_e_value=0.0389396	bias_p_value=8.38917e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=354.5	fisher_strand_p_value=3.69249e-10	frequency=2.130e-01	ks_quality_p_value=1	major_base=C	major_cov=56/77	major_frequency=7.870e-01	minor_base=A	minor_cov=35/1	new_cov=35/1	polymorphism_frequency=2.130e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=56/77	total_cov=91/78
RA	166	.	NC_000913	3783983	0	G	A	bias_e_value=2080180	bias_p_value=0.448155	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.5	fisher_strand_p_value=0.169283	frequency=2.017e-01	ks_quality_p_value=0.928938	major_base=G	major_cov=46/49	major_frequency=7.983e-01	minor_base=A	minor_cov=16/8	new_cov=16/8	polymorphism_frequency=2.017e-01	polymorphism_score=61.2	prediction=polymorphism	ref_cov=46/49	total_cov=62/58
RA	167	.	NC_000913	3815883	1	.	C	bias_e_value=3763730	bias_p_value=0.81086	consensus_score=386.3	fisher_strand_p_value=0.451923	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=46/57	major_frequency=9.904e-01	minor_base=A	minor_cov=1/0	new_cov=46/57	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/57
RA	168	.	NC_000913	3843750	0	C	A	bias_e_value=1.0531	bias_p_value=2.26881e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.1	fisher_strand_p_value=1.17819e-08	frequency=2.734e-01	ks_quality_p_value=1	major_base=C	major_cov=48/45	major_frequency=7.266e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.734e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=48/45	total_cov=83/46
RA	169	.	NC_000913	3865885	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=267.2	fisher_strand_p_value=1	frequency=2.069e-01	ks_quality_p_value=0.999875	major_base=A	major_cov=50/42	major_frequency=7.931e-01	minor_base=G	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=2.069e-01	polymorphism_score=57.8	prediction=polymorphism	ref_cov=50/42	total_cov=63/53
RA	170	.	NC_000913	3903234	0	G	A	bias_e_value=628117	bias_p_value=0.135322	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.1	fisher_strand_p_value=0.0306168	frequency=2.763e-01	ks_quality_p_value=0.981021	major_base=G	major_cov=32/23	major_frequency=7.237e-01	minor_base=A	minor_cov=18/3	new_cov=18/3	polymorphism_frequency=2.763e-01	polymorphism_score=60.2	prediction=polymorphism	ref_cov=32/23	total_cov=50/26
RA	171	.	NC_000913	3911533	0	C	A	bias_e_value=1.27084e-09	bias_p_value=2.7379e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.2	fisher_strand_p_value=6.75418e-18	frequency=3.056e-01	ks_quality_p_value=1	major_base=C	major_cov=28/72	major_frequency=6.944e-01	minor_base=A	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=3.056e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=28/72	total_cov=72/72
RA	172	.	NC_000913	3965174	0	G	A	bias_e_value=4441310	bias_p_value=0.956839	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.2	fisher_strand_p_value=0.768438	frequency=2.055e-01	ks_quality_p_value=0.938221	major_base=G	major_cov=24/34	major_frequency=7.945e-01	minor_base=A	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=2.055e-01	polymorphism_score=41.3	prediction=polymorphism	ref_cov=24/34	total_cov=29/44
RA	173	.	NC_000913	3968683	0	G	A	bias_e_value=4635420	bias_p_value=0.998658	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.3	fisher_strand_p_value=1	frequency=2.676e-01	ks_quality_p_value=0.948648	major_base=G	major_cov=23/29	major_frequency=7.324e-01	minor_base=A	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.676e-01	polymorphism_score=52.7	prediction=polymorphism	ref_cov=23/29	total_cov=32/39
RA	174	.	NC_000913	4009698	0	G	A	bias_e_value=986067	bias_p_value=0.212439	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.8	fisher_strand_p_value=0.106613	frequency=2.000e-01	ks_quality_p_value=0.509156	major_base=G	major_cov=21/27	major_frequency=8.000e-01	minor_base=A	minor_cov=2/10	new_cov=2/10	polymorphism_frequency=2.000e-01	polymorphism_score=31.4	prediction=polymorphism	ref_cov=21/27	total_cov=23/37
RA	175	.	NC_000913	4084903	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.6	fisher_strand_p_value=1	frequency=2.165e-01	ks_quality_p_value=1	major_base=T	major_cov=42/34	major_frequency=7.835e-01	minor_base=G	minor_cov=11/10	new_cov=11/10	polymorphism_frequency=2.165e-01	polymorphism_score=51.2	prediction=polymorphism	ref_cov=42/34	total_cov=53/44
RA	176	.	NC_000913	4143377	0	C	T	bias_e_value=3887480	bias_p_value=0.837521	consensus_score=283.8	fisher_strand_p_value=0.487179	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/37	major_frequency=9.872e-01	minor_base=G	minor_cov=0/1	new_cov=40/37	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	177	.	NC_000913	4193996	0	T	G	consensus_score=248.9	frequency=1	major_base=G	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	178	.	NC_000913	4212959	0	G	C	bias_e_value=4361780	bias_p_value=0.939705	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.1	fisher_strand_p_value=0.682453	frequency=7.949e-01	ks_quality_p_value=0.986853	major_base=C	major_cov=22/9	major_frequency=7.949e-01	minor_base=G	minor_cov=5/3	new_cov=22/9	polymorphism_frequency=7.949e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=5/3	total_cov=28/12
RA	179	.	NC_000913	4212973	0	T	.	bias_e_value=1889190	bias_p_value=0.407008	consensus_score=131.7	fisher_strand_p_value=0.689165	frequency=1	ks_quality_p_value=0.197104	major_base=.	major_cov=26/11	major_frequency=8.222e-01	minor_base=T	minor_cov=5/3	new_cov=26/11	polymorphism_frequency=8.222e-01	polymorphism_score=36.1	prediction=consensus	ref_cov=5/3	total_cov=31/14
RA	180	.	NC_000913	4213310	0	G	T	bias_e_value=0.000304033	bias_p_value=6.55011e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.5	fisher_strand_p_value=2.35844e-12	frequency=3.738e-01	ks_quality_p_value=1	major_base=G	major_cov=42/25	major_frequency=6.262e-01	minor_base=T	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.738e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=42/25	total_cov=42/65
RA	181	.	NC_000913	4223638	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=449.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=56/66	major_frequency=9.919e-01	minor_base=T	minor_cov=0/1	new_cov=56/66	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=56/67
RA	182	.	NC_000913	4293781	0	G	A	consensus_score=300.2	frequency=1	major_base=A	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	183	.	NC_000913	4293782	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=288.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/45	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=39/45	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	184	.	NC_000913	4296268	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.4	fisher_strand_p_value=1	frequency=2.895e-01	ks_quality_p_value=1	major_base=T	major_cov=14/13	major_frequency=7.105e-01	minor_base=C	minor_cov=5/6	new_cov=5/6	polymorphism_frequency=2.895e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=14/13	total_cov=19/19
RA	185	.	NC_000913	4296380	1	.	C	bias_e_value=4278560	bias_p_value=0.921776	consensus_score=251.2	fisher_strand_p_value=0.631504	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=40/31	major_frequency=9.467e-01	minor_base=.	minor_cov=3/1	new_cov=40/31	polymorphism_frequency=9.467e-01	polymorphism_score=4.9	prediction=consensus	ref_cov=3/1	total_cov=45/33
RA	186	.	NC_000913	4296380	2	.	G	bias_e_value=4282900	bias_p_value=0.92271	consensus_score=258.5	fisher_strand_p_value=0.633545	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=42/32	major_frequency=9.487e-01	minor_base=.	minor_cov=3/1	new_cov=42/32	polymorphism_frequency=9.487e-01	polymorphism_score=7.2	prediction=consensus	ref_cov=3/1	total_cov=45/33
RA	187	.	NC_000913	4325644	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=267.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/52	major_frequency=9.875e-01	minor_base=G	minor_cov=0/1	new_cov=27/52	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=27/54
RA	188	.	NC_000913	4325948	0	A	G	bias_e_value=2629780	bias_p_value=0.566562	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.6	fisher_strand_p_value=0.229006	frequency=2.000e-01	ks_quality_p_value=1	major_base=A	major_cov=11/21	major_frequency=8.000e-01	minor_base=G	minor_cov=5/3	new_cov=5/3	polymorphism_frequency=2.000e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=11/21	total_cov=16/24
RA	189	.	NC_000913	4360965	0	C	A	bias_e_value=6.97446e-07	bias_p_value=1.50258e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.2	fisher_strand_p_value=4.4123e-15	frequency=2.687e-01	ks_quality_p_value=1	major_base=C	major_cov=29/69	major_frequency=7.313e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.687e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=29/69	total_cov=65/70
RA	190	.	NC_000913	4400254	0	C	T	consensus_score=373.4	frequency=1	major_base=T	major_cov=55/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/56
RA	191	.	NC_000913	4423337	0	C	T	bias_e_value=2214380	bias_p_value=0.477068	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.3	fisher_strand_p_value=0.174907	frequency=7.571e-01	ks_quality_p_value=0.990877	major_base=T	major_cov=27/26	major_frequency=7.571e-01	minor_base=C	minor_cov=12/5	new_cov=27/26	polymorphism_frequency=7.571e-01	polymorphism_score=41.9	prediction=polymorphism	ref_cov=12/5	total_cov=39/31
RA	192	.	NC_000913	4449586	0	G	A	bias_e_value=4641550	bias_p_value=0.999978	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.5	fisher_strand_p_value=1	frequency=7.727e-01	ks_quality_p_value=0.993338	major_base=A	major_cov=44/24	major_frequency=7.727e-01	minor_base=G	minor_cov=13/7	new_cov=44/24	polymorphism_frequency=7.727e-01	polymorphism_score=51.6	prediction=polymorphism	ref_cov=13/7	total_cov=57/31
RA	193	.	NC_000913	4473900	0	C	T	bias_e_value=3929840	bias_p_value=0.846646	consensus_score=319.8	fisher_strand_p_value=0.500105	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/52	major_frequency=9.796e-01	minor_base=G	minor_cov=0/2	new_cov=44/52	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	194	.	NC_000913	4475493	0	T	C	bias_e_value=3918500	bias_p_value=0.844204	consensus_score=555.3	fisher_strand_p_value=0.496599	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=72/74	major_frequency=9.932e-01	minor_base=A	minor_cov=1/0	new_cov=72/74	polymorphism_frequency=9.932e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/74
RA	195	.	NC_000913	4510238	0	T	G	bias_e_value=984492	bias_p_value=0.2121	consensus_score=361.7	fisher_strand_p_value=0.0567423	frequency=1	ks_quality_p_value=0.954606	major_base=G	major_cov=54/49	major_frequency=9.626e-01	minor_base=T	minor_cov=0/4	new_cov=54/49	polymorphism_frequency=9.626e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/4	total_cov=54/53
RA	196	.	NC_000913	4532409	0	T	G	bias_e_value=4633620	bias_p_value=0.99827	consensus_score=180.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.941765	major_base=G	major_cov=27/33	major_frequency=8.000e-01	minor_base=T	minor_cov=7/8	new_cov=27/33	polymorphism_frequency=8.000e-01	polymorphism_score=30.4	prediction=consensus	ref_cov=7/8	total_cov=34/41
RA	197	.	NC_000913	4546601	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=481.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=62/74	major_frequency=9.927e-01	minor_base=G	minor_cov=0/1	new_cov=62/74	polymorphism_frequency=9.927e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=63/75
RA	198	.	NC_000913	4636925	0	G	C	consensus_score=349.5	frequency=1	major_base=C	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	199	.	NC_000913	4638240	0	G	A	consensus_score=270.5	frequency=1	major_base=A	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
MC	200	.	NC_000913	257908	258683	767	0	left_inside_cov=1	left_outside_cov=35	right_inside_cov=0	right_outside_cov=34
MC	201	.	NC_000913	280300	291377	0	735	left_inside_cov=29	left_outside_cov=30	right_inside_cov=29	right_outside_cov=31
MC	202	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=136	right_inside_cov=3	right_outside_cov=141
MC	203	.	NC_000913	1978495	1979270	0	767	left_inside_cov=0	left_outside_cov=95	right_inside_cov=0	right_outside_cov=107
MC	204	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=69	right_inside_cov=1	right_outside_cov=70
MC	205	.	NC_000913	3423764	3424486	468	248	left_inside_cov=29	left_outside_cov=31	right_inside_cov=28	right_outside_cov=31
JC	206	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=65	coverage_plus=73	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=293	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=297	max_left_minus=297	max_left_plus=272	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=148	max_min_right_minus=143	max_min_right_plus=148	max_pos_hash_score=588	max_right=298	max_right_minus=297	max_right_plus=298	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.49	new_junction_read_count=139	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=138
JC	207	.	NC_000913	256107	-1	NC_000913	371382	1	0	alignment_overlap=8	coverage_minus=45	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_000913__256107__-1__NC_000913__371374__1__8____300__300__0__0	max_left=284	max_left_minus=282	max_left_plus=284	max_min_left=139	max_min_left_minus=139	max_min_left_plus=121	max_min_right=144	max_min_right_minus=144	max_min_right_plus=143	max_pos_hash_score=572	max_right=289	max_right_minus=288	max_right_plus=289	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.98	new_junction_read_count=89	polymorphism_frequency=8.229e-01	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.27	side_1_overlap=8	side_1_possible_overlap_registers=293	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.15	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=14	side_2_redundant=0	total_non_overlap_reads=88
JC	208	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=14	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=282	max_min_left=137	max_min_left_minus=84	max_min_left_plus=137	max_min_right=144	max_min_right_minus=87	max_min_right_plus=144	max_pos_hash_score=572	max_right=273	max_right_minus=273	max_right_plus=257	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.38	new_junction_read_count=34	polymorphism_frequency=9.859e-01	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=8	side_1_possible_overlap_registers=293	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	209	.	NC_000913	257908	1	NC_000913	788785	1	0	alignment_overlap=0	coverage_minus=40	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__257908__1__NC_000913__788785__1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=285	max_min_left=149	max_min_left_minus=149	max_min_left_plus=145	max_min_right=147	max_min_right_minus=142	max_min_right_plus=147	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=281	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.75	new_junction_read_count=70	polymorphism_frequency=8.829e-01	pos_hash_score=53	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=9	side_2_redundant=0	total_non_overlap_reads=70
JC	210	.	NC_000913	258675	-1	NC_000913	788793	-1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__258675__-1__NC_000913__788793__-1__0____300__300__1__0	max_left=291	max_left_minus=291	max_left_plus=287	max_min_left=147	max_min_left_minus=124	max_min_left_plus=147	max_min_right=144	max_min_right_minus=144	max_min_right_plus=137	max_pos_hash_score=588	max_right=292	max_right_minus=292	max_right_plus=270	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.73	new_junction_read_count=68	polymorphism_frequency=8.799e-01	pos_hash_score=51	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=9	side_2_redundant=0	total_non_overlap_reads=67
JC	211	.	NC_000913	273955	1	NC_000913	667349	-1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.800e-02	junction_possible_overlap_registers=292	key=NC_000913__273955__1__NC_000913__667350__-1__1____300__300__1__0	max_left=277	max_left_minus=277	max_left_plus=210	max_min_left=103	max_min_left_minus=0	max_min_left_plus=103	max_min_right=94	max_min_right_minus=94	max_min_right_plus=89	max_pos_hash_score=586	max_right=196	max_right_minus=94	max_right_plus=196	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=4.800e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=119	side_2_redundant=0	total_non_overlap_reads=6
JC	212	.	NC_000913	290634	1	NC_000913	3731428	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.522e-02	junction_possible_overlap_registers=293	key=NC_000913__290634__1__NC_000913__3731428__-1__0____300__300__1__0	max_left=88	max_left_minus=54	max_left_plus=88	max_min_left=88	max_min_left_minus=54	max_min_left_plus=88	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=588	max_right=285	max_right_minus=252	max_right_plus=285	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=6.522e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=6
JC	213	.	NC_000913	291401	-1	NC_000913	3731420	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.058e-01	junction_possible_overlap_registers=293	key=NC_000913__291401__-1__NC_000913__3731420__1__0____300__300__1__0	max_left=112	max_left_minus=100	max_left_plus=112	max_min_left=112	max_min_left_minus=100	max_min_left_plus=112	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=588	max_right=285	max_right_minus=285	max_right_plus=277	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.12	new_junction_read_count=11	polymorphism_frequency=1.058e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=11
JC	214	.	NC_000913	315229	1	NC_000913	3429986	1	-1	alignment_overlap=-1	coverage_minus=42	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=7.863e-01	junction_possible_overlap_registers=292	key=NC_000913__315229__1__NC_000913__3429986__1__-1__T__300__300__0__0	max_left=284	max_left_minus=276	max_left_plus=284	max_min_left=147	max_min_left_minus=147	max_min_left_plus=130	max_min_right=147	max_min_right_minus=147	max_min_right_plus=144	max_pos_hash_score=586	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=77	polymorphism_frequency=7.863e-01	pos_hash_score=53	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.23	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=77	unique_read_sequence=T
JC	215	.	NC_000913	458790	1	NC_000913	608008	1	0	alignment_overlap=3	coverage_minus=7	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.596e-01	junction_possible_overlap_registers=290	key=NC_000913__458787__1__NC_000913__608008__1__3____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=182	max_min_left=145	max_min_left_minus=130	max_min_left_plus=145	max_min_right=120	max_min_right_minus=72	max_min_right_plus=120	max_pos_hash_score=582	max_right=247	max_right_minus=191	max_right_plus=247	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.16	new_junction_read_count=15	polymorphism_frequency=1.596e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=3	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=14
JC	216	.	NC_000913	458795	-1	NC_000913	609351	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.136e-01	junction_possible_overlap_registers=289	key=NC_000913__458799__-1__NC_000913__609351__-1__4____300__300__0__1	max_left=239	max_left_minus=224	max_left_plus=239	max_min_left=143	max_min_left_minus=12	max_min_left_plus=143	max_min_right=142	max_min_right_minus=142	max_min_right_plus=112	max_pos_hash_score=580	max_right=283	max_right_minus=283	max_right_plus=276	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.136e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=4	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10
JC	217	.	NC_000913	524342	-1	NC_000913	524790	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.513e-02	junction_possible_overlap_registers=292	key=NC_000913__524342__-1__NC_000913__524789__1__1____300__300__0__0	max_left=198	max_left_minus=198	max_left_plus=198	max_min_left=97	max_min_left_minus=97	max_min_left_plus=92	max_min_right=29	max_min_right_minus=29	max_min_right_plus=29	max_pos_hash_score=586	max_right=130	max_right_minus=130	max_right_plus=130	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=6.513e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.54	side_1_overlap=1	side_1_possible_overlap_registers=293	side_1_read_count=50	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=4
JC	218	.	NC_000913	688112	-1	NC_000913	688179	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.370e-01	junction_possible_overlap_registers=283	key=NC_000913__688112__-1__NC_000913__688169__1__10____300__300__0__1	max_left=268	max_left_minus=268	max_left_plus=97	max_min_left=97	max_min_left_minus=0	max_min_left_plus=97	max_min_right=117	max_min_right_minus=117	max_min_right_plus=0	max_pos_hash_score=568	max_right=193	max_right_minus=117	max_right_plus=193	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.370e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.11	side_1_overlap=10	side_1_possible_overlap_registers=293	side_1_read_count=10	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	219	.	NC_000913	688112	-1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.618e-02	junction_possible_overlap_registers=283	key=NC_000913__688112__-1__NC_000913__2066477__1__10____300__300__0__0	max_left=268	max_left_minus=268	max_left_plus=97	max_min_left=97	max_min_left_minus=0	max_min_left_plus=97	max_min_right=117	max_min_right_minus=117	max_min_right_plus=0	max_pos_hash_score=568	max_right=193	max_right_minus=117	max_right_plus=193	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=6.618e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.11	side_1_overlap=10	side_1_possible_overlap_registers=293	side_1_read_count=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	220	.	NC_000913	696469	-1	NC_000913	696583	1	-1	alignment_overlap=-1	coverage_minus=9	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=2.709e-01	junction_possible_overlap_registers=292	key=NC_000913__696469__-1__NC_000913__696583__1__-1__T__300__300__0__0	max_left=291	max_left_minus=291	max_left_plus=280	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=141	max_min_right_minus=106	max_min_right_plus=141	max_pos_hash_score=586	max_right=141	max_right_minus=106	max_right_plus=141	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.27	new_junction_read_count=25	polymorphism_frequency=2.709e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=19	unique_read_sequence=T
JC	221	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=10	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=2.119e-01	junction_possible_overlap_registers=215	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=149	max_left_minus=149	max_left_plus=101	max_min_left=101	max_min_left_minus=70	max_min_left_plus=101	max_min_right=106	max_min_right_minus=106	max_min_right_plus=0	max_pos_hash_score=432	max_right=179	max_right_minus=152	max_right_plus=179	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.22	new_junction_read_count=15	polymorphism_frequency=2.119e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.62	side_1_overlap=78	side_1_possible_overlap_registers=293	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=15
JC	222	.	NC_000913	781016	-1	NC_000913	781809	1	0	alignment_overlap=37	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=4.574e-02	junction_possible_overlap_registers=256	key=NC_000913__781016__-1__NC_000913__781772__1__37____300__300__0__0	max_left=258	max_left_minus=258	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_pos_hash_score=514	max_right=2	max_right_minus=2	max_right_plus=0	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.574e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=37	side_1_possible_overlap_registers=293	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=256	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=3
JC	223	.	NC_000913	781322	-1	NC_000913	781811	1	0	alignment_overlap=39	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.842e-02	junction_possible_overlap_registers=254	key=NC_000913__781322__-1__NC_000913__781772__1__39____300__300__0__0	max_left=69	max_left_minus=69	max_left_plus=69	max_min_left=69	max_min_left_minus=69	max_min_left_plus=69	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=510	max_right=171	max_right_minus=171	max_right_plus=171	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=7.842e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=39	side_1_possible_overlap_registers=293	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=6
JC	224	.	NC_000913	1049778	1	NC_000913	3731420	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.102e-02	junction_possible_overlap_registers=293	key=NC_000913__1049778__1__NC_000913__3731420__1__0____300__300__0__0	max_left=37	max_left_minus=37	max_left_plus=30	max_min_left=37	max_min_left_minus=37	max_min_left_plus=30	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=588	max_right=285	max_right_minus=285	max_right_plus=277	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=5.102e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=5
JC	225	.	NC_000913	1050545	-1	NC_000913	3731428	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.042e-01	junction_possible_overlap_registers=293	key=NC_000913__1050545__-1__NC_000913__3731428__-1__0____300__300__0__0	max_left=134	max_left_minus=134	max_left_plus=122	max_min_left=134	max_min_left_minus=134	max_min_left_plus=122	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=588	max_right=285	max_right_minus=252	max_right_plus=285	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.042e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=10
JC	226	.	NC_000913	1094245	1	NC_000913	1586114	-1	0	alignment_overlap=2	coverage_minus=36	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1094245__1__NC_000913__1586116__-1__2____300__300__1__0	max_left=296	max_left_minus=296	max_left_plus=252	max_min_left=145	max_min_left_minus=145	max_min_left_plus=139	max_min_right=138	max_min_right_minus=138	max_min_right_plus=115	max_pos_hash_score=584	max_right=295	max_right_minus=271	max_right_plus=295	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=90	polymorphism_frequency=8.901e-01	pos_hash_score=61	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.12	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=11	side_2_redundant=0	total_non_overlap_reads=87
JC	227	.	NC_000913	1094245	1	NC_000913	3429990	-1	0	alignment_overlap=1	coverage_minus=36	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=7.843e-01	junction_possible_overlap_registers=292	key=NC_000913__1094245__1__NC_000913__3429991__-1__1____300__300__1__0	max_left=296	max_left_minus=265	max_left_plus=296	max_min_left=147	max_min_left_minus=136	max_min_left_plus=147	max_min_right=128	max_min_right_minus=124	max_min_right_plus=128	max_pos_hash_score=586	max_right=295	max_right_minus=289	max_right_plus=295	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.86	new_junction_read_count=80	polymorphism_frequency=7.843e-01	pos_hash_score=49	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.24	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=22	side_2_redundant=0	total_non_overlap_reads=77
JC	228	.	NC_000913	1095502	-1	NC_000913	1586112	1	0	alignment_overlap=0	coverage_minus=45	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1095502__-1__NC_000913__1586112__1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=284	max_min_left=140	max_min_left_minus=140	max_min_left_plus=120	max_min_right=148	max_min_right_minus=138	max_min_right_plus=148	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=294	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.95	new_junction_read_count=89	polymorphism_frequency=8.890e-01	pos_hash_score=62	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.12	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=11	side_2_redundant=0	total_non_overlap_reads=87
JC	229	.	NC_000913	1096961	1	NC_000913	1097503	-1	0	alignment_overlap=80	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=6.146e-02	junction_possible_overlap_registers=213	key=NC_000913__1096961__1__NC_000913__1097583__-1__80____300__300__0__0	max_left=48	max_left_minus=48	max_left_plus=45	max_min_left=48	max_min_left_minus=48	max_min_left_plus=45	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=428	max_right=194	max_right_minus=194	max_right_plus=173	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=6.146e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=80	side_1_possible_overlap_registers=293	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=3
JC	230	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=38	coverage_plus=27	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=277	key=NC_000913__1207790__1__NC_000913__1209603__1__16____300__300__0__0	max_left=276	max_left_minus=276	max_left_plus=237	max_min_left=130	max_min_left_minus=127	max_min_left_plus=130	max_min_right=142	max_min_right_minus=134	max_min_right_plus=142	max_pos_hash_score=556	max_right=274	max_right_minus=259	max_right_plus=274	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.74	new_junction_read_count=65	polymorphism_frequency=8.593e-01	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=16	side_1_possible_overlap_registers=293	side_1_read_count=13	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=9	side_2_redundant=0	total_non_overlap_reads=65
JC	231	.	NC_000913	1207798	-1	NC_000913	1209608	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=2.005e-01	junction_possible_overlap_registers=292	key=NC_000913__1207798__-1__NC_000913__1209608__-1__-1__T__300__300__0__0	max_left=175	max_left_minus=0	max_left_plus=175	max_min_left=101	max_min_left_minus=0	max_min_left_plus=101	max_min_right=123	max_min_right_minus=0	max_min_right_plus=123	max_pos_hash_score=586	max_right=202	max_right_minus=0	max_right_plus=202	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.005e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=13	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.12	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=11	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=T
JC	232	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=40	coverage_plus=17	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=277	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____300__300__0__0	max_left=282	max_left_minus=282	max_left_plus=272	max_min_left=135	max_min_left_minus=134	max_min_left_plus=135	max_min_right=142	max_min_right_minus=142	max_min_right_plus=95	max_pos_hash_score=556	max_right=262	max_right_minus=262	max_right_plus=251	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.66	new_junction_read_count=58	polymorphism_frequency=8.567e-01	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=16	side_1_possible_overlap_registers=293	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=9	side_2_redundant=0	total_non_overlap_reads=57
JC	233	.	NC_000913	1286906	-1	NC_000913	4175537	-1	0	alignment_overlap=19	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=3.979e-02	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__4175556__-1__19____300__300__0__0	max_left=269	max_left_minus=269	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=22	max_min_right_minus=22	max_min_right_plus=0	max_pos_hash_score=550	max_right=22	max_right_minus=22	max_right_plus=0	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.979e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=19	side_1_possible_overlap_registers=293	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=3
JC	234	.	NC_000913	1287063	-1	NC_000913	1287536	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.807e-02	junction_possible_overlap_registers=292	key=NC_000913__1287063__-1__NC_000913__1287535__1__1____300__300__0__0	max_left=143	max_left_minus=143	max_left_plus=133	max_min_left=143	max_min_left_minus=143	max_min_left_plus=133	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=271	max_right_minus=156	max_right_plus=271	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.807e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=1	side_1_possible_overlap_registers=293	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=3
JC	235	.	NC_000913	1287073	-1	NC_000913	1287547	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.595e-02	junction_possible_overlap_registers=292	key=NC_000913__1287073__-1__NC_000913__1287547__1__-1__T__300__300__0__0	max_left=128	max_left_minus=128	max_left_plus=128	max_min_left=128	max_min_left_minus=128	max_min_left_plus=128	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=293	max_right_minus=155	max_right_plus=293	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.595e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=T
JC	236	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=5	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.308e-01	junction_possible_overlap_registers=273	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=227	max_min_left=45	max_min_left_minus=45	max_min_left_plus=13	max_min_right=117	max_min_right_minus=117	max_min_right_plus=98	max_pos_hash_score=548	max_right=235	max_right_minus=235	max_right_plus=133	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=1.308e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=20	side_1_possible_overlap_registers=293	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=8
JC	237	.	NC_000913	1287085	-1	NC_000913	1287383	1	0	alignment_overlap=22	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.717e-02	junction_possible_overlap_registers=271	key=NC_000913__1287085__-1__NC_000913__1287361__1__22____300__300__0__0	max_left=162	max_left_minus=162	max_left_plus=72	max_min_left=72	max_min_left_minus=72	max_min_left_plus=72	max_min_right=109	max_min_right_minus=109	max_min_right_plus=0	max_pos_hash_score=544	max_right=242	max_right_minus=210	max_right_plus=242	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=9.717e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=22	side_1_possible_overlap_registers=293	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=271	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=6
JC	238	.	NC_000913	1293196	1	NC_000913	1300693	-1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1293196__1__NC_000913__1300693__-1__0____300__300__0__1	max_left=297	max_left_minus=287	max_left_plus=297	max_min_left=135	max_min_left_minus=135	max_min_left_plus=135	max_min_right=146	max_min_right_minus=146	max_min_right_plus=146	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=278	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.11	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=102
JC	239	.	NC_000913	1293196	1	NC_000913	1428794	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1293196__1__NC_000913__1428794__-1__0____300__300__0__0	max_left=264	max_left_minus=264	max_left_plus=238	max_min_left=145	max_min_left_minus=145	max_min_left_plus=138	max_min_right=141	max_min_right_minus=141	max_min_right_plus=109	max_pos_hash_score=588	max_right=287	max_right_minus=235	max_right_plus=287	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.29	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=26
JC	240	.	NC_000913	1293199	-1	NC_000913	1299499	1	0	alignment_overlap=0	coverage_minus=36	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1293199__-1__NC_000913__1299499__1__0____300__300__0__1	max_left=298	max_left_minus=283	max_left_plus=298	max_min_left=147	max_min_left_minus=140	max_min_left_plus=147	max_min_right=139	max_min_right_minus=139	max_min_right_plus=125	max_pos_hash_score=588	max_right=293	max_right_minus=293	max_right_plus=288	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=98
JC	241	.	NC_000913	1293199	-1	NC_000913	1427599	1	0	alignment_overlap=2	coverage_minus=14	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1293199__-1__NC_000913__1427597__1__2____300__300__0__0	max_left=257	max_left_minus=257	max_left_plus=229	max_min_left=135	max_min_left_minus=117	max_min_left_plus=135	max_min_right=107	max_min_right_minus=95	max_min_right_plus=107	max_pos_hash_score=584	max_right=293	max_right_minus=293	max_right_plus=258	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.26	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	read_count_offset=4	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=22
JC	242	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=57	coverage_plus=76	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=287	max_left_plus=294	max_min_left=147	max_min_left_minus=139	max_min_left_plus=147	max_min_right=143	max_min_right_minus=143	max_min_right_plus=142	max_pos_hash_score=580	max_right=283	max_right_minus=283	max_right_plus=269	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.48	new_junction_read_count=136	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=133
JC	243	.	NC_000913	1396044	1	NC_000913	1633135	-1	0	alignment_overlap=2	coverage_minus=60	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1396044__1__NC_000913__1633137__-1__2____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=259	max_min_left=147	max_min_left_minus=112	max_min_left_plus=147	max_min_right=149	max_min_right_minus=149	max_min_right_plus=140	max_pos_hash_score=584	max_right=297	max_right_minus=297	max_right_plus=279	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.12	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104
JC	244	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=51	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=294	max_left_minus=286	max_left_plus=294	max_min_left=141	max_min_left_minus=141	max_min_left_plus=120	max_min_right=149	max_min_right_minus=141	max_min_right_plus=149	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=257	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.01	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	245	.	NC_000913	1399590	1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1399590__1__NC_000913__2101749__1__0____300__300__0__1	max_left=298	max_left_minus=297	max_left_plus=298	max_min_left=145	max_min_left_minus=145	max_min_left_plus=144	max_min_right=146	max_min_right_minus=145	max_min_right_plus=146	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=285	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.07	new_junction_read_count=100	polymorphism_frequency=8.109e-01	pos_hash_score=66	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.25	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=23	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=97
JC	246	.	NC_000913	1399593	-1	NC_000913	2290113	-1	0	alignment_overlap=1	coverage_minus=40	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=7.960e-01	junction_possible_overlap_registers=292	key=NC_000913__1399594__-1__NC_000913__2290113__-1__1____300__300__0__1	max_left=297	max_left_minus=285	max_left_plus=297	max_min_left=149	max_min_left_minus=149	max_min_left_plus=139	max_min_right=148	max_min_right_minus=148	max_min_right_plus=145	max_pos_hash_score=586	max_right=292	max_right_minus=292	max_right_plus=289	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.98	new_junction_read_count=91	polymorphism_frequency=7.960e-01	pos_hash_score=57	prediction=polymorphism	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.25	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=23	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=89
JC	247	.	NC_000913	1411924	-1	NC_000913	1434985	1	0	alignment_overlap=26	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.873e-02	junction_possible_overlap_registers=267	key=NC_000913__1411924__-1__NC_000913__1434959__1__26____300__300__0__0	max_left=179	max_left_minus=179	max_left_plus=137	max_min_left=122	max_min_left_minus=111	max_min_left_plus=122	max_min_right=137	max_min_right_minus=95	max_min_right_plus=137	max_pos_hash_score=536	max_right=163	max_right_minus=163	max_right_plus=152	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=3.873e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=26	side_1_possible_overlap_registers=293	side_1_read_count=122	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.61	side_2_overlap=0	side_2_possible_overlap_registers=267	side_2_read_count=137	side_2_redundant=0	total_non_overlap_reads=5
JC	248	.	NC_000913	1469240	-1	NC_000913	1667229	-1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=6.604e-01	junction_possible_overlap_registers=293	key=NC_000913__1469240__-1__NC_000913__1667229__-1__0____300__300__1__0	max_left=296	max_left_minus=291	max_left_plus=296	max_min_left=135	max_min_left_minus=135	max_min_left_plus=134	max_min_right=149	max_min_right_minus=142	max_min_right_plus=149	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=286	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.75	new_junction_read_count=70	polymorphism_frequency=6.604e-01	pos_hash_score=47	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.39	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=70
JC	249	.	NC_000913	1619733	1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=22	flanking_left=300	flanking_right=300	frequency=2.397e-01	junction_possible_overlap_registers=293	key=NC_000913__1619733__1__NC_000913__2290113__-1__0____300__300__0__1	max_left=297	max_left_minus=249	max_left_plus=297	max_min_left=149	max_min_left_minus=125	max_min_left_plus=149	max_min_right=146	max_min_right_minus=138	max_min_right_plus=146	max_pos_hash_score=588	max_right=287	max_right_minus=287	max_right_plus=282	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.38	new_junction_read_count=35	polymorphism_frequency=2.397e-01	pos_hash_score=28	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=35
JC	250	.	NC_000913	1633132	1	NC_000913	2101749	1	0	alignment_overlap=1	coverage_minus=36	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1633131__1__NC_000913__2101749__1__1____300__300__0__1	max_left=297	max_left_minus=292	max_left_plus=297	max_min_left=149	max_min_left_minus=147	max_min_left_plus=149	max_min_right=131	max_min_right_minus=122	max_min_right_plus=131	max_pos_hash_score=586	max_right=293	max_right_minus=293	max_right_plus=283	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=92	polymorphism_frequency=9.784e-01	pos_hash_score=62	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=91
JC	251	.	NC_000913	1651548	-1	NC_000913	1667225	1	0	alignment_overlap=1	coverage_minus=41	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=6.694e-01	junction_possible_overlap_registers=292	key=NC_000913__1651548__-1__NC_000913__1667224__1__1____300__300__1__0	max_left=292	max_left_minus=292	max_left_plus=288	max_min_left=143	max_min_left_minus=138	max_min_left_plus=143	max_min_right=141	max_min_right_minus=141	max_min_right_plus=132	max_pos_hash_score=586	max_right=288	max_right_minus=266	max_right_plus=288	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.89	new_junction_read_count=83	polymorphism_frequency=6.694e-01	pos_hash_score=51	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.44	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=82
JC	252	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=12	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=224	max_left_minus=198	max_left_plus=224	max_min_left=132	max_min_left_minus=132	max_min_left_plus=96	max_min_right=117	max_min_right_minus=117	max_min_right_plus=100	max_pos_hash_score=572	max_right=281	max_right_minus=276	max_right_plus=281	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.22	new_junction_read_count=20	polymorphism_frequency=9.763e-01	pos_hash_score=15	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=8	side_1_possible_overlap_registers=293	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20
JC	253	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=299	max_left_minus=294	max_left_plus=299	max_min_left=143	max_min_left_minus=143	max_min_left_plus=140	max_min_right=150	max_min_right_minus=145	max_min_right_plus=150	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.12	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=102
JC	254	.	NC_000913	2067353	-1	NC_000913	2237687	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.774e-02	junction_possible_overlap_registers=293	key=NC_000913__2067353__-1__NC_000913__2237687__-1__0____300__300__0__0	max_left=30	max_left_minus=30	max_left_plus=24	max_min_left=30	max_min_left_minus=30	max_min_left_plus=24	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=276	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.774e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=4
JC	255	.	NC_000913	2068941	1	NC_000913	2130694	1	0	alignment_overlap=0	coverage_minus=35	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=7.327e-01	junction_possible_overlap_registers=293	key=NC_000913__2068941__1__NC_000913__2130694__1__0____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=286	max_min_left=147	max_min_left_minus=147	max_min_left_plus=137	max_min_right=134	max_min_right_minus=113	max_min_right_plus=134	max_pos_hash_score=588	max_right=291	max_right_minus=262	max_right_plus=291	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.79	new_junction_read_count=74	polymorphism_frequency=7.327e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.29	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=71
JC	256	.	NC_000913	2068941	1	NC_000913	2317112	1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=7.698e-01	junction_possible_overlap_registers=293	key=NC_000913__2068941__1__NC_000913__2317112__1__0____300__300__1__0	max_left=296	max_left_minus=263	max_left_plus=296	max_min_left=147	max_min_left_minus=139	max_min_left_plus=147	max_min_right=140	max_min_right_minus=140	max_min_right_plus=100	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=278	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.04	new_junction_read_count=97	polymorphism_frequency=7.698e-01	pos_hash_score=55	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.31	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=95
JC	257	.	NC_000913	2070271	-1	NC_000913	2130698	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=29	flanking_left=300	flanking_right=300	frequency=7.732e-01	junction_possible_overlap_registers=293	key=NC_000913__2070271__-1__NC_000913__2130698__-1__0____300__300__1__0	max_left=297	max_left_minus=297	max_left_plus=296	max_min_left=147	max_min_left_minus=147	max_min_left_plus=132	max_min_right=148	max_min_right_minus=148	max_min_right_plus=139	max_pos_hash_score=588	max_right=296	max_right_minus=294	max_right_plus=296	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.80	new_junction_read_count=75	polymorphism_frequency=7.732e-01	pos_hash_score=50	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.24	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=22	side_2_redundant=0	total_non_overlap_reads=73
JC	258	.	NC_000913	2070271	-1	NC_000913	2317116	-1	0	alignment_overlap=0	coverage_minus=31	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=7.010e-01	junction_possible_overlap_registers=293	key=NC_000913__2070271__-1__NC_000913__2317116__-1__0____300__300__1__0	max_left=297	max_left_minus=297	max_left_plus=297	max_min_left=138	max_min_left_minus=137	max_min_left_plus=138	max_min_right=136	max_min_right_minus=127	max_min_right_plus=136	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=275	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.73	new_junction_read_count=68	polymorphism_frequency=7.010e-01	pos_hash_score=41	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.31	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=66
JC	259	.	NC_000913	2092986	1	NC_000913	2092981	-1	0	alignment_overlap=14	coverage_minus=4	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.285e-01	junction_possible_overlap_registers=279	key=NC_000913__2092986__1__NC_000913__2092995__-1__14____300__300__0__0	max_left=258	max_left_minus=166	max_left_plus=258	max_min_left=138	max_min_left_minus=138	max_min_left_plus=78	max_min_right=121	max_min_right_minus=119	max_min_right_plus=121	max_pos_hash_score=560	max_right=277	max_right_minus=277	max_right_plus=224	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.285e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=14	side_1_possible_overlap_registers=293	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=10
JC	260	.	NC_000913	2170171	1	NC_000913	2468300	-1	0	alignment_overlap=0	coverage_minus=45	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=7.236e-01	junction_possible_overlap_registers=293	key=NC_000913__2170171__1__NC_000913__2468300__-1__0____300__300__1__0	max_left=295	max_left_minus=289	max_left_plus=295	max_min_left=147	max_min_left_minus=147	max_min_left_plus=139	max_min_right=149	max_min_right_minus=149	max_min_right_plus=134	max_pos_hash_score=588	max_right=289	max_right_minus=289	max_right_plus=282	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.95	new_junction_read_count=89	polymorphism_frequency=7.236e-01	pos_hash_score=57	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=88
JC	261	.	NC_000913	2171428	-1	NC_000913	2468298	1	0	alignment_overlap=1	coverage_minus=31	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=6.071e-01	junction_possible_overlap_registers=292	key=NC_000913__2171428__-1__NC_000913__2468297__1__1____300__300__1__0	max_left=265	max_left_minus=265	max_left_plus=223	max_min_left=147	max_min_left_minus=136	max_min_left_plus=147	max_min_right=147	max_min_right_minus=147	max_min_right_plus=139	max_pos_hash_score=586	max_right=297	max_right_minus=297	max_right_plus=290	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.55	new_junction_read_count=51	polymorphism_frequency=6.071e-01	pos_hash_score=37	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=51
JC	262	.	NC_000913	2237684	1	NC_000913	2288919	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.071e-01	junction_possible_overlap_registers=293	key=NC_000913__2237684__1__NC_000913__2288919__1__0____300__300__0__1	max_left=193	max_left_minus=186	max_left_plus=193	max_min_left=142	max_min_left_minus=97	max_min_left_plus=142	max_min_right=114	max_min_right_minus=114	max_min_right_plus=107	max_pos_hash_score=588	max_right=279	max_right_minus=279	max_right_plus=211	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=12	polymorphism_frequency=1.071e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	263	.	NC_000913	2237687	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.429e-01	junction_possible_overlap_registers=293	key=NC_000913__2237687__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=298	max_left_minus=276	max_left_plus=298	max_min_left=115	max_min_left_minus=115	max_min_left_plus=83	max_min_right=139	max_min_right_minus=139	max_min_right_plus=60	max_pos_hash_score=588	max_right=287	max_right_minus=218	max_right_plus=287	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.18	new_junction_read_count=17	polymorphism_frequency=1.429e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=16
JC	264	.	NC_000913	2288919	1	NC_000913	3349205	-1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=1.478e-01	junction_possible_overlap_registers=292	key=NC_000913__2288919__1__NC_000913__3349206__-1__1____300__300__1__0	max_left=292	max_left_minus=251	max_left_plus=292	max_min_left=117	max_min_left_minus=111	max_min_left_plus=117	max_min_right=85	max_min_right_minus=85	max_min_right_plus=77	max_pos_hash_score=586	max_right=242	max_right_minus=242	max_right_plus=242	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.18	new_junction_read_count=17	polymorphism_frequency=1.478e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=16
JC	265	.	NC_000913	2357742	-1	NC_000913	2357938	1	0	alignment_overlap=11	coverage_minus=5	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.801e-02	junction_possible_overlap_registers=282	key=NC_000913__2357742__-1__NC_000913__2357927__1__11____300__300__0__0	max_left=248	max_left_minus=248	max_left_plus=169	max_min_left=127	max_min_left_minus=127	max_min_left_plus=104	max_min_right=114	max_min_right_minus=68	max_min_right_plus=114	max_pos_hash_score=566	max_right=185	max_right_minus=162	max_right_plus=185	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=6.801e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.35	side_1_overlap=11	side_1_possible_overlap_registers=293	side_1_read_count=126	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=8
JC	266	.	NC_000913	2518116	-1	NC_000913	2518232	1	0	alignment_overlap=81	coverage_minus=5	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.076e-01	junction_possible_overlap_registers=212	key=NC_000913__2518116__-1__NC_000913__2518151__1__81____300__300__0__0	max_left=199	max_left_minus=199	max_left_plus=78	max_min_left=78	max_min_left_minus=0	max_min_left_plus=78	max_min_right=82	max_min_right_minus=82	max_min_right_plus=0	max_pos_hash_score=426	max_right=198	max_right_minus=82	max_right_plus=198	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.12	new_junction_read_count=8	polymorphism_frequency=1.076e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=81	side_1_possible_overlap_registers=293	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=8
JC	267	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=30	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=275	max_left_minus=275	max_left_plus=240	max_min_left=138	max_min_left_minus=138	max_min_left_plus=131	max_min_right=132	max_min_right_minus=124	max_min_right_plus=132	max_pos_hash_score=572	max_right=286	max_right_minus=266	max_right_plus=286	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.76	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68
JC	268	.	NC_000913	2653390	-1	NC_000913	2653718	1	-1	alignment_overlap=-1	coverage_minus=5	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.802e-02	junction_possible_overlap_registers=292	key=NC_000913__2653390__-1__NC_000913__2653718__1__-1__C__300__300__0__0	max_left=218	max_left_minus=218	max_left_plus=218	max_min_left=101	max_min_left_minus=101	max_min_left_plus=0	max_min_right=102	max_min_right_minus=102	max_min_right_plus=102	max_pos_hash_score=586	max_right=129	max_right_minus=129	max_right_plus=102	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=7.802e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=C
JC	269	.	NC_000913	2765412	1	NC_000913	2765419	-1	0	alignment_overlap=44	coverage_minus=12	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.560e-01	junction_possible_overlap_registers=249	key=NC_000913__2765412__1__NC_000913__2765463__-1__44____300__300__0__0	max_left=175	max_left_minus=175	max_left_plus=173	max_min_left=111	max_min_left_minus=111	max_min_left_plus=73	max_min_right=115	max_min_right_minus=115	max_min_right_plus=60	max_pos_hash_score=500	max_right=229	max_right_minus=155	max_right_plus=229	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.23	new_junction_read_count=18	polymorphism_frequency=1.560e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=44	side_1_possible_overlap_registers=293	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=249	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=18
JC	270	.	NC_000913	2996361	1	NC_000913	3485997	1	0	alignment_overlap=0	coverage_minus=32	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2996361__1__NC_000913__3485997__1__0____300__300__1__0	max_left=294	max_left_minus=279	max_left_plus=294	max_min_left=142	max_min_left_minus=142	max_min_left_plus=137	max_min_right=148	max_min_right_minus=147	max_min_right_plus=148	max_pos_hash_score=588	max_right=299	max_right_minus=263	max_right_plus=299	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.75	new_junction_read_count=70	polymorphism_frequency=8.309e-01	pos_hash_score=51	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.15	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=14	side_2_redundant=0	total_non_overlap_reads=67
JC	271	.	NC_000913	3186096	1	NC_000913	3264988	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.261e-01	junction_possible_overlap_registers=293	key=NC_000913__3186096__1__NC_000913__3264988__1__0____300__300__1__0	max_left=286	max_left_minus=275	max_left_plus=286	max_min_left=135	max_min_left_minus=135	max_min_left_plus=114	max_min_right=127	max_min_right_minus=127	max_min_right_plus=119	max_pos_hash_score=588	max_right=214	max_right_minus=211	max_right_plus=214	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.16	new_junction_read_count=15	polymorphism_frequency=1.261e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=13
JC	272	.	NC_000913	3186096	1	NC_000913	3486001	-1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3186096__1__NC_000913__3486001__-1__0____300__300__1__0	max_left=296	max_left_minus=269	max_left_plus=296	max_min_left=145	max_min_left_minus=145	max_min_left_plus=122	max_min_right=150	max_min_right_minus=137	max_min_right_plus=150	max_pos_hash_score=588	max_right=295	max_right_minus=293	max_right_plus=295	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.79	new_junction_read_count=74	polymorphism_frequency=8.386e-01	pos_hash_score=50	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.15	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=14	side_2_redundant=0	total_non_overlap_reads=71
JC	273	.	NC_000913	3187426	-1	NC_000913	3264992	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.250e-01	junction_possible_overlap_registers=293	key=NC_000913__3187426__-1__NC_000913__3264992__-1__0____300__300__1__0	max_left=226	max_left_minus=226	max_left_plus=205	max_min_left=139	max_min_left_minus=139	max_min_left_plus=87	max_min_right=139	max_min_right_minus=139	max_min_right_plus=101	max_pos_hash_score=588	max_right=260	max_right_minus=260	max_right_plus=213	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.16	new_junction_read_count=15	polymorphism_frequency=1.250e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=105	side_2_redundant=0	total_non_overlap_reads=15
JC	274	.	NC_000913	3269705	-1	NC_000913	3270228	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.020e-02	junction_possible_overlap_registers=284	key=NC_000913__3269705__-1__NC_000913__3270219__1__9____300__300__0__0	max_left=44	max_left_minus=44	max_left_plus=44	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=26	max_min_right_minus=26	max_min_right_plus=26	max_pos_hash_score=570	max_right=289	max_right_minus=26	max_right_plus=289	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.020e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=9	side_1_possible_overlap_registers=293	side_1_read_count=109	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=3
JC	275	.	NC_000913	3350556	1	NC_000913	3583428	1	0	alignment_overlap=0	coverage_minus=32	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3350556__1__NC_000913__3583428__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=292	max_min_left=145	max_min_left_minus=145	max_min_left_plus=145	max_min_right=148	max_min_right_minus=127	max_min_right_plus=148	max_pos_hash_score=588	max_right=291	max_right_minus=286	max_right_plus=291	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.85	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	read_count_offset=8	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=285	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=78
JC	276	.	NC_000913	3350563	-1	NC_000913	3584195	-1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3350563__-1__NC_000913__3584195__-1__0____300__300__0__1	max_left=297	max_left_minus=294	max_left_plus=297	max_min_left=149	max_min_left_minus=149	max_min_left_plus=142	max_min_right=140	max_min_right_minus=121	max_min_right_plus=140	max_pos_hash_score=588	max_right=286	max_right_minus=266	max_right_plus=286	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.94	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=8	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=285	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=87
JC	277	.	NC_000913	3409280	-1	NC_000913	3409752	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.689e-02	junction_possible_overlap_registers=282	key=NC_000913__3409280__-1__NC_000913__3409741__1__11____300__300__0__0	max_left=65	max_left_minus=65	max_left_plus=64	max_min_left=65	max_min_left_minus=65	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=566	max_right=176	max_right_minus=176	max_right_plus=176	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.689e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=11	side_1_possible_overlap_registers=293	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=4
JC	278	.	NC_000913	3469097	-1	NC_000913	3469401	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.400e-02	junction_possible_overlap_registers=280	key=NC_000913__3469097__-1__NC_000913__3469388__1__13____300__300__0__0	max_left=224	max_left_minus=224	max_left_plus=150	max_min_left=133	max_min_left_minus=0	max_min_left_plus=133	max_min_right=97	max_min_right_minus=97	max_min_right_plus=97	max_pos_hash_score=562	max_right=154	max_right_minus=97	max_right_plus=154	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.400e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=13	side_1_possible_overlap_registers=293	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.41	side_2_overlap=0	side_2_possible_overlap_registers=280	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=4
JC	279	.	NC_000913	3583428	1	NC_000913	3731420	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=1.696e-01	junction_possible_overlap_registers=293	key=NC_000913__3583428__1__NC_000913__3731420__1__0____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=250	max_min_left=142	max_min_left_minus=100	max_min_left_plus=142	max_min_right=144	max_min_right_minus=107	max_min_right_plus=144	max_pos_hash_score=588	max_right=285	max_right_minus=285	max_right_plus=277	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.20	new_junction_read_count=19	polymorphism_frequency=1.696e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=19
JC	280	.	NC_000913	3584195	-1	NC_000913	3731428	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.731e-01	junction_possible_overlap_registers=293	key=NC_000913__3584195__-1__NC_000913__3731428__-1__0____300__300__1__0	max_left=281	max_left_minus=252	max_left_plus=281	max_min_left=134	max_min_left_minus=134	max_min_left_plus=122	max_min_right=116	max_min_right_minus=116	max_min_right_plus=34	max_pos_hash_score=588	max_right=285	max_right_minus=252	max_right_plus=285	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.19	new_junction_read_count=18	polymorphism_frequency=1.731e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=18
JC	281	.	NC_000913	3653230	-1	NC_000913	3653447	1	0	alignment_overlap=0	coverage_minus=73	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=7.933e-01	junction_possible_overlap_registers=293	key=NC_000913__3653230__-1__NC_000913__3653447__1__0____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=283	max_min_left=146	max_min_left_minus=146	max_min_left_plus=142	max_min_right=149	max_min_right_minus=142	max_min_right_plus=149	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=294	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.28	new_junction_read_count=119	polymorphism_frequency=7.933e-01	pos_hash_score=75	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.33	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=118
JC	282	.	NC_000913	3731420	1	NC_000913	4518476	1	-4	alignment_overlap=-4	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.169e-02	junction_possible_overlap_registers=289	key=NC_000913__3731420__1__NC_000913__4518476__1__-4__GGTG__300__300__0__0	max_left=285	max_left_minus=277	max_left_plus=285	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=33	max_min_right_minus=26	max_min_right_plus=33	max_pos_hash_score=580	max_right=33	max_right_minus=26	max_right_plus=33	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=5.169e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=GGTG
JC	283	.	NC_000913	4094350	-1	NC_000913	4094719	1	0	alignment_overlap=41	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.955e-02	junction_possible_overlap_registers=252	key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0	max_left=206	max_left_minus=206	max_left_plus=151	max_min_left=63	max_min_left_minus=63	max_min_left_plus=4	max_min_right=107	max_min_right_minus=53	max_min_right_plus=107	max_pos_hash_score=506	max_right=251	max_right_minus=87	max_right_plus=251	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.955e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=41	side_1_possible_overlap_registers=293	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=252	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=4
JC	284	.	NC_000913	4176887	-1	NC_000913	4177077	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.413e-02	junction_possible_overlap_registers=280	key=NC_000913__4176900__-1__NC_000913__4177077__1__13____300__300__1__0	max_left=256	max_left_minus=256	max_left_plus=122	max_min_left=131	max_min_left_minus=131	max_min_left_plus=122	max_min_right=31	max_min_right_minus=31	max_min_right_plus=0	max_pos_hash_score=562	max_right=165	max_right_minus=156	max_right_plus=165	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.413e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=13	side_2_possible_overlap_registers=293	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=3
JC	285	.	NC_000913	4284120	-1	NC_000913	4284631	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.285e-02	junction_possible_overlap_registers=281	key=NC_000913__4284120__-1__NC_000913__4284619__1__12____300__300__0__0	max_left=122	max_left_minus=122	max_left_plus=122	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=89	max_min_right_minus=89	max_min_right_plus=35	max_pos_hash_score=564	max_right=89	max_right_minus=89	max_right_plus=89	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.285e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=12	side_1_possible_overlap_registers=293	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=4
JC	286	.	NC_000913	4295870	-1	NC_000913	4296434	1	0	alignment_overlap=39	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=8.739e-02	junction_possible_overlap_registers=254	key=NC_000913__4295870__-1__NC_000913__4296395__1__39____300__300__0__0	max_left=202	max_left_minus=202	max_left_plus=202	max_min_left=109	max_min_left_minus=0	max_min_left_plus=109	max_min_right=122	max_min_right_minus=122	max_min_right_plus=8	max_pos_hash_score=510	max_right=152	max_right_minus=122	max_right_plus=152	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=8.739e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=39	side_1_possible_overlap_registers=293	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=8
JC	287	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=7	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=1.138e-01	junction_possible_overlap_registers=284	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=242	max_min_left=141	max_min_left_minus=141	max_min_left_plus=141	max_min_right=143	max_min_right_minus=143	max_min_right_plus=73	max_pos_hash_score=570	max_right=263	max_right_minus=242	max_right_plus=263	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.20	new_junction_read_count=18	polymorphism_frequency=1.138e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.61	side_1_overlap=9	side_1_possible_overlap_registers=293	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.49	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=135	side_2_redundant=0	total_non_overlap_reads=17
JC	288	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=12	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=1.317e-01	junction_possible_overlap_registers=284	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=276	max_left_minus=260	max_left_plus=276	max_min_left=144	max_min_left_minus=144	max_min_left_plus=126	max_min_right=142	max_min_right_minus=142	max_min_right_plus=129	max_pos_hash_score=570	max_right=280	max_right_minus=280	max_right_plus=257	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.24	new_junction_read_count=22	polymorphism_frequency=1.317e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.75	side_1_overlap=9	side_1_possible_overlap_registers=293	side_1_read_count=163	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.46	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=132	side_2_redundant=0	total_non_overlap_reads=22
UN	289	.	NC_000913	15661	15661
UN	290	.	NC_000913	15663	16469
UN	291	.	NC_000913	20063	20063
UN	292	.	NC_000913	20070	20290
UN	293	.	NC_000913	224019	224512
UN	294	.	NC_000913	225177	225317
UN	295	.	NC_000913	227272	228414
UN	296	.	NC_000913	228417	228418
UN	297	.	NC_000913	257908	258683
UN	298	.	NC_000913	261005	261006
UN	299	.	NC_000913	261009	261009
UN	300	.	NC_000913	261022	261022
UN	301	.	NC_000913	270727	270727
UN	302	.	NC_000913	270757	271116
UN	303	.	NC_000913	271129	271129
UN	304	.	NC_000913	271136	271137
UN	305	.	NC_000913	274150	274152
UN	306	.	NC_000913	274154	274916
UN	307	.	NC_000913	274918	274918
UN	308	.	NC_000913	274923	274923
UN	309	.	NC_000913	277780	277780
UN	310	.	NC_000913	279354	279354
UN	311	.	NC_000913	279367	279368
UN	312	.	NC_000913	279370	279370
UN	313	.	NC_000913	279372	279821
UN	314	.	NC_000913	283411	283411
UN	315	.	NC_000913	283427	283427
UN	316	.	NC_000913	283437	283511
UN	317	.	NC_000913	283518	283518
UN	318	.	NC_000913	283520	283520
UN	319	.	NC_000913	283522	283523
UN	320	.	NC_000913	283526	283526
UN	321	.	NC_000913	283530	283532
UN	322	.	NC_000913	283536	283536
UN	323	.	NC_000913	283540	283541
UN	324	.	NC_000913	283544	283544
UN	325	.	NC_000913	283551	283551
UN	326	.	NC_000913	283554	283555
UN	327	.	NC_000913	283562	283562
UN	328	.	NC_000913	283567	283567
UN	329	.	NC_000913	283578	283578
UN	330	.	NC_000913	283598	283598
UN	331	.	NC_000913	283622	283622
UN	332	.	NC_000913	283628	283628
UN	333	.	NC_000913	283640	283640
UN	334	.	NC_000913	283645	283645
UN	335	.	NC_000913	283649	283649
UN	336	.	NC_000913	283658	283658
UN	337	.	NC_000913	283667	283667
UN	338	.	NC_000913	283670	283670
UN	339	.	NC_000913	283676	283676
UN	340	.	NC_000913	283684	283684
UN	341	.	NC_000913	283689	283689
UN	342	.	NC_000913	283693	283695
UN	343	.	NC_000913	283697	283698
UN	344	.	NC_000913	283702	283702
UN	345	.	NC_000913	283709	283710
UN	346	.	NC_000913	283712	283713
UN	347	.	NC_000913	283715	283716
UN	348	.	NC_000913	283718	283719
UN	349	.	NC_000913	283723	283723
UN	350	.	NC_000913	283725	283725
UN	351	.	NC_000913	283727	283728
UN	352	.	NC_000913	283732	283732
UN	353	.	NC_000913	283736	283737
UN	354	.	NC_000913	283739	283739
UN	355	.	NC_000913	283743	283743
UN	356	.	NC_000913	283745	283746
UN	357	.	NC_000913	283761	283761
UN	358	.	NC_000913	283773	283773
UN	359	.	NC_000913	283802	283802
UN	360	.	NC_000913	283808	284499
UN	361	.	NC_000913	284524	284524
UN	362	.	NC_000913	284529	284537
UN	363	.	NC_000913	284549	284549
UN	364	.	NC_000913	284768	284768
UN	365	.	NC_000913	285788	285983
UN	366	.	NC_000913	285986	285986
UN	367	.	NC_000913	285990	285990
UN	368	.	NC_000913	285993	285993
UN	369	.	NC_000913	286019	286019
UN	370	.	NC_000913	286031	286031
UN	371	.	NC_000913	286034	286034
UN	372	.	NC_000913	286911	286939
UN	373	.	NC_000913	286952	286952
UN	374	.	NC_000913	286963	286963
UN	375	.	NC_000913	287023	287023
UN	376	.	NC_000913	287033	287034
UN	377	.	NC_000913	287038	287039
UN	378	.	NC_000913	287041	287041
UN	379	.	NC_000913	287045	287045
UN	380	.	NC_000913	287048	287048
UN	381	.	NC_000913	287050	287050
UN	382	.	NC_000913	287056	287056
UN	383	.	NC_000913	287060	287060
UN	384	.	NC_000913	287066	287067
UN	385	.	NC_000913	287069	287069
UN	386	.	NC_000913	287074	287074
UN	387	.	NC_000913	287080	287080
UN	388	.	NC_000913	287093	287093
UN	389	.	NC_000913	287116	287116
UN	390	.	NC_000913	287120	287120
UN	391	.	NC_000913	287122	287122
UN	392	.	NC_000913	287124	287124
UN	393	.	NC_000913	287131	287131
UN	394	.	NC_000913	287144	287144
UN	395	.	NC_000913	287150	287150
UN	396	.	NC_000913	287157	287158
UN	397	.	NC_000913	287164	287166
UN	398	.	NC_000913	287173	287173
UN	399	.	NC_000913	287177	287177
UN	400	.	NC_000913	287179	287180
UN	401	.	NC_000913	287193	287193
UN	402	.	NC_000913	287198	287198
UN	403	.	NC_000913	287203	287203
UN	404	.	NC_000913	287206	287206
UN	405	.	NC_000913	287208	287208
UN	406	.	NC_000913	287210	287210
UN	407	.	NC_000913	287212	287212
UN	408	.	NC_000913	287216	287216
UN	409	.	NC_000913	287220	287335
UN	410	.	NC_000913	287384	287384
UN	411	.	NC_000913	287717	287717
UN	412	.	NC_000913	287734	287734
UN	413	.	NC_000913	287783	287783
UN	414	.	NC_000913	287875	287875
UN	415	.	NC_000913	287878	287878
UN	416	.	NC_000913	287885	287885
UN	417	.	NC_000913	287895	287934
UN	418	.	NC_000913	287936	287945
UN	419	.	NC_000913	287949	287949
UN	420	.	NC_000913	288108	288108
UN	421	.	NC_000913	288251	288251
UN	422	.	NC_000913	288256	288257
UN	423	.	NC_000913	288260	288260
UN	424	.	NC_000913	288263	288263
UN	425	.	NC_000913	288271	288272
UN	426	.	NC_000913	288281	288281
UN	427	.	NC_000913	288284	288285
UN	428	.	NC_000913	288287	288287
UN	429	.	NC_000913	288289	288289
UN	430	.	NC_000913	288291	288326
UN	431	.	NC_000913	288332	288332
UN	432	.	NC_000913	288338	288338
UN	433	.	NC_000913	288341	288341
UN	434	.	NC_000913	288343	288343
UN	435	.	NC_000913	288346	288346
UN	436	.	NC_000913	288353	288354
UN	437	.	NC_000913	288362	288362
UN	438	.	NC_000913	288368	288368
UN	439	.	NC_000913	288374	288394
UN	440	.	NC_000913	288396	288396
UN	441	.	NC_000913	288398	288403
UN	442	.	NC_000913	288405	288406
UN	443	.	NC_000913	288415	288416
UN	444	.	NC_000913	288420	288420
UN	445	.	NC_000913	288430	288430
UN	446	.	NC_000913	288432	288432
UN	447	.	NC_000913	288438	288438
UN	448	.	NC_000913	288445	288446
UN	449	.	NC_000913	288448	288455
UN	450	.	NC_000913	288457	288458
UN	451	.	NC_000913	288460	288467
UN	452	.	NC_000913	288470	288485
UN	453	.	NC_000913	288487	288513
UN	454	.	NC_000913	288515	288525
UN	455	.	NC_000913	288527	288532
UN	456	.	NC_000913	288535	288535
UN	457	.	NC_000913	288543	288543
UN	458	.	NC_000913	288892	288892
UN	459	.	NC_000913	288896	288961
UN	460	.	NC_000913	288972	288972
UN	461	.	NC_000913	290898	290899
UN	462	.	NC_000913	290901	290902
UN	463	.	NC_000913	290904	291149
UN	464	.	NC_000913	291151	291151
UN	465	.	NC_000913	295590	295590
UN	466	.	NC_000913	301458	301458
UN	467	.	NC_000913	301487	301487
UN	468	.	NC_000913	301508	301508
UN	469	.	NC_000913	301515	301515
UN	470	.	NC_000913	301520	301520
UN	471	.	NC_000913	301526	301526
UN	472	.	NC_000913	301530	301530
UN	473	.	NC_000913	301539	301539
UN	474	.	NC_000913	301544	301544
UN	475	.	NC_000913	302086	302086
UN	476	.	NC_000913	302149	302149
UN	477	.	NC_000913	302254	302257
UN	478	.	NC_000913	302260	302323
UN	479	.	NC_000913	302326	302326
UN	480	.	NC_000913	302329	302332
UN	481	.	NC_000913	315504	316309
UN	482	.	NC_000913	326880	326880
UN	483	.	NC_000913	327765	327765
UN	484	.	NC_000913	327767	327797
UN	485	.	NC_000913	328234	328234
UN	486	.	NC_000913	328239	328239
UN	487	.	NC_000913	328247	328247
UN	488	.	NC_000913	328274	328274
UN	489	.	NC_000913	339941	339941
UN	490	.	NC_000913	339979	339979
UN	491	.	NC_000913	339986	339986
UN	492	.	NC_000913	339992	339992
UN	493	.	NC_000913	340024	340026
UN	494	.	NC_000913	340035	340035
UN	495	.	NC_000913	349030	349030
UN	496	.	NC_000913	349038	349038
UN	497	.	NC_000913	371017	371017
UN	498	.	NC_000913	381534	381534
UN	499	.	NC_000913	381540	381540
UN	500	.	NC_000913	381542	381542
UN	501	.	NC_000913	381544	381545
UN	502	.	NC_000913	381547	382324
UN	503	.	NC_000913	382326	382327
UN	504	.	NC_000913	382330	382332
UN	505	.	NC_000913	382334	382335
UN	506	.	NC_000913	391974	391974
UN	507	.	NC_000913	391979	391980
UN	508	.	NC_000913	391984	392697
UN	509	.	NC_000913	526096	526096
UN	510	.	NC_000913	526098	526448
UN	511	.	NC_000913	567046	567756
UN	512	.	NC_000913	567760	567762
UN	513	.	NC_000913	567765	567766
UN	514	.	NC_000913	574861	575505
UN	515	.	NC_000913	608278	609084
UN	516	.	NC_000913	688119	688119
UN	517	.	NC_000913	688129	688765
UN	518	.	NC_000913	1094509	1095224
UN	519	.	NC_000913	1095245	1095245
UN	520	.	NC_000913	1299499	1300697
UN	521	.	NC_000913	1396321	1396322
UN	522	.	NC_000913	1396324	1396966
UN	523	.	NC_000913	1468182	1468182
UN	524	.	NC_000913	1468185	1468186
UN	525	.	NC_000913	1468188	1468974
UN	526	.	NC_000913	1469550	1469550
UN	527	.	NC_000913	1469553	1469553
UN	528	.	NC_000913	1469559	1469559
UN	529	.	NC_000913	1469561	1470228
UN	530	.	NC_000913	1470230	1470230
UN	531	.	NC_000913	1528512	1528512
UN	532	.	NC_000913	1528517	1528518
UN	533	.	NC_000913	1528520	1528521
UN	534	.	NC_000913	1528524	1528526
UN	535	.	NC_000913	1528530	1528922
UN	536	.	NC_000913	1651118	1651118
UN	537	.	NC_000913	1651121	1651265
UN	538	.	NC_000913	1651274	1651274
UN	539	.	NC_000913	1978495	1979270
UN	540	.	NC_000913	2067006	2067049
UN	541	.	NC_000913	2069196	2069196
UN	542	.	NC_000913	2069198	2069198
UN	543	.	NC_000913	2069201	2069201
UN	544	.	NC_000913	2069203	2070005
UN	545	.	NC_000913	2070018	2070018
UN	546	.	NC_000913	2102011	2102663
UN	547	.	NC_000913	2170440	2170440
UN	548	.	NC_000913	2170444	2170444
UN	549	.	NC_000913	2170449	2171155
UN	550	.	NC_000913	2171158	2171160
UN	551	.	NC_000913	2289198	2289833
UN	552	.	NC_000913	2514540	2515350
UN	553	.	NC_000913	2558699	2565488
UN	554	.	NC_000913	2726311	2726311
UN	555	.	NC_000913	2726320	2726320
UN	556	.	NC_000913	2726323	2728979
UN	557	.	NC_000913	2729817	2730690
UN	558	.	NC_000913	2730692	2730692
UN	559	.	NC_000913	2996622	2997418
UN	560	.	NC_000913	3130426	3131068
UN	561	.	NC_000913	3186345	3186345
UN	562	.	NC_000913	3186361	3186362
UN	563	.	NC_000913	3186369	3187160
UN	564	.	NC_000913	3365820	3365821
UN	565	.	NC_000913	3365823	3365824
UN	566	.	NC_000913	3365826	3366470
UN	567	.	NC_000913	3423924	3423924
UN	568	.	NC_000913	3423927	3424390
UN	569	.	NC_000913	3424921	3424922
UN	570	.	NC_000913	3424924	3424926
UN	571	.	NC_000913	3424928	3426576
UN	572	.	NC_000913	3427216	3428295
UN	573	.	NC_000913	3428297	3428298
UN	574	.	NC_000913	3583691	3583931
UN	575	.	NC_000913	3619542	3619542
UN	576	.	NC_000913	3619548	3619549
UN	577	.	NC_000913	3619551	3620825
UN	578	.	NC_000913	3620828	3620828
UN	579	.	NC_000913	3620838	3620838
UN	580	.	NC_000913	3620842	3620842
UN	581	.	NC_000913	3620857	3620857
UN	582	.	NC_000913	3621330	3621330
UN	583	.	NC_000913	3621336	3622033
UN	584	.	NC_000913	3622049	3622050
UN	585	.	NC_000913	3652298	3652301
UN	586	.	NC_000913	3652306	3653019
UN	587	.	NC_000913	3653024	3653025
UN	588	.	NC_000913	3653030	3653035
UN	589	.	NC_000913	3653037	3653037
UN	590	.	NC_000913	3653041	3653041
UN	591	.	NC_000913	3653044	3653044
UN	592	.	NC_000913	3653048	3653048
UN	593	.	NC_000913	3653050	3653050
UN	594	.	NC_000913	3653053	3653053
UN	595	.	NC_000913	3653055	3653055
UN	596	.	NC_000913	3653057	3653057
UN	597	.	NC_000913	3653063	3653063
UN	598	.	NC_000913	3653068	3653068
UN	599	.	NC_000913	3653070	3653071
UN	600	.	NC_000913	3762519	3763848
UN	601	.	NC_000913	3764272	3764272
UN	602	.	NC_000913	3764276	3765055
UN	603	.	NC_000913	3942295	3943130
UN	604	.	NC_000913	3944330	3944333
UN	605	.	NC_000913	3944335	3944335
UN	606	.	NC_000913	3944337	3945296
UN	607	.	NC_000913	3945299	3945301
UN	608	.	NC_000913	3945306	3945306
UN	609	.	NC_000913	4035438	4036813
UN	610	.	NC_000913	4038078	4038429
UN	611	.	NC_000913	4038458	4038458
UN	612	.	NC_000913	4039005	4039007
UN	613	.	NC_000913	4039009	4039096
UN	614	.	NC_000913	4039670	4039670
UN	615	.	NC_000913	4039674	4040322
UN	616	.	NC_000913	4166557	4166557
UN	617	.	NC_000913	4166561	4166561
UN	618	.	NC_000913	4166566	4166567
UN	619	.	NC_000913	4166574	4166575
UN	620	.	NC_000913	4166577	4166580
UN	621	.	NC_000913	4166585	4166589
UN	622	.	NC_000913	4166592	4166594
UN	623	.	NC_000913	4166914	4166914
UN	624	.	NC_000913	4166918	4166919
UN	625	.	NC_000913	4166922	4167930
UN	626	.	NC_000913	4168835	4171359
UN	627	.	NC_000913	4176825	4176827
UN	628	.	NC_000913	4176829	4176833
UN	629	.	NC_000913	4208390	4209446
UN	630	.	NC_000913	4210304	4212891
UN	631	.	NC_000913	4498467	4498467
UN	632	.	NC_000913	4498470	4499247
UN	633	.	NC_000913	4507741	4508408