#=GENOME_DIFF	1.0
#=CREATED	15:31:53 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8640_S18_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8640_S18_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8640_S18_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8640_S18_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8640_S18_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	476826034
#=CONVERTED-READS	1612121
#=INPUT-BASES	476931399
#=INPUT-READS	1612482
#=MAPPED-BASES	461369879
#=MAPPED-READS	1560876
SNP	1	72	NC_000913	164396	T
MOB	2	172,173	NC_000913	194729	IS4	1	13
DEL	3	164,174	NC_000913	257908	776
MOB	4	179,180	NC_000913	295882	IS2	1	5
SNP	5	73	NC_000913	414799	A
SNP	6	74	NC_000913	448201	A
MOB	7	175,177	NC_000913	526915	IS1	1	9
SNP	8	75	NC_000913	557635	T
SNP	9	76	NC_000913	695334	C
SNP	10	79	NC_000913	901135	T
SNP	11	80	NC_000913	987152	T
MOB	12	183,189	NC_000913	1105376	IS2	-1	5
SNP	13	84	NC_000913	1190053	G
MOB	14	176,178	NC_000913	1302233	IS1	-1	8
SNP	15	88	NC_000913	1337394	G
MOB	16	198,199	NC_000913	1464205	IS150	-1	3
MOB	17	200,201	NC_000913	1494484	IS2	1	5
SNP	18	93	NC_000913	1565745	T
DEL	19	94	NC_000913	1594256	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=C
SNP	20	96	NC_000913	1652331	C
DEL	21	97	NC_000913	1667887	1
MOB	22	202,203	NC_000913	1743451	IS4	1	12
SNP	23	98	NC_000913	1753680	A
SNP	24	102	NC_000913	1817734	T
SNP	25	103	NC_000913	1848239	A
SNP	26	105	NC_000913	2032423	A
SNP	27	106	NC_000913	2043522	A
DEL	28	166,208	NC_000913	2102944	12095	mediated=IS5
DEL	29	108,109	NC_000913	2173363	2
DEL	30	111	NC_000913	2286257	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=G
MOB	31	207,211	NC_000913	2316421	IS2	1	5
SNP	32	113	NC_000913	2319563	G
MOB	33	204,205	NC_000913	2406780	IS1	-1	8
SNP	34	116	NC_000913	2488630	T
MOB	35	214,215	NC_000913	2594860	IS4	-1	11
MOB	36	217,218	NC_000913	2736907	IS4	-1	14
SNP	37	119	NC_000913	2777445	A
SNP	38	121	NC_000913	2818362	A
SNP	39	122	NC_000913	2867455	A
MOB	40	209,210	NC_000913	3262447	IS5	1	4
SNP	41	129	NC_000913	3334781	T
SNP	42	130	NC_000913	3383189	A
SNP	43	132	NC_000913	3486205	A
SNP	44	133	NC_000913	3507249	T
SNP	45	134	NC_000913	3511420	T
SNP	46	135	NC_000913	3511466	T
SNP	47	136	NC_000913	3515876	T
SNP	48	137	NC_000913	3533565	C
SNP	49	138	NC_000913	3535436	T
SNP	50	139	NC_000913	3535837	A
INS	51	140	NC_000913	3560455	G
DEL	52	168,230	NC_000913	3682261	34
SNP	53	142	NC_000913	3707476	A
MOB	54	225,231	NC_000913	3737137	IS2	1	5
SNP	55	144	NC_000913	3775096	A
SNP	56	145	NC_000913	3775130	T
SNP	57	147	NC_000913	3888347	T
MOB	58	232,233	NC_000913	3931505	IS2	1	5
SNP	59	149	NC_000913	3937793	T
SNP	60	150	NC_000913	3966643	T
SNP	61	151	NC_000913	3967134	T
MOB	62	237,238	NC_000913	4123923	IS2	-1	5
SNP	63	153	NC_000913	4279875	T
INS	64	155,156	NC_000913	4296381	GC
SNP	65	157	NC_000913	4315040	T
SNP	66	158	NC_000913	4347395	T
SNP	67	160	NC_000913	4413516	C
SUB	68	161,162	NC_000913	4423824	2	TT
RA	69	.	NC_000913	58065	0	C	A	bias_e_value=1.45706	bias_p_value=3.13909e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.5	fisher_strand_p_value=1.65966e-08	frequency=3.000e-01	ks_quality_p_value=1	major_base=C	major_cov=32/38	major_frequency=7.000e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.000e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=32/38	total_cov=62/38
RA	70	.	NC_000913	85651	0	G	T	bias_e_value=117.788	bias_p_value=2.53763e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.3	fisher_strand_p_value=1.78235e-06	frequency=2.522e-01	ks_quality_p_value=1	major_base=G	major_cov=37/49	major_frequency=7.478e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.522e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=37/49	total_cov=37/78
RA	71	.	NC_000913	141849	0	C	A	bias_e_value=3.97601e-05	bias_p_value=8.56593e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.1	fisher_strand_p_value=2.86673e-13	frequency=2.950e-01	ks_quality_p_value=1	major_base=C	major_cov=38/60	major_frequency=7.050e-01	minor_base=A	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=2.950e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=38/60	total_cov=79/61
RA	72	.	NC_000913	164396	0	C	T	consensus_score=254.9	frequency=1	major_base=T	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	73	.	NC_000913	414799	0	G	A	consensus_score=300.1	frequency=1	major_base=A	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	74	.	NC_000913	448201	0	G	A	consensus_score=207.4	frequency=1	major_base=A	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	75	.	NC_000913	557635	0	A	T	consensus_score=234.8	frequency=1	major_base=T	major_cov=43/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/21
RA	76	.	NC_000913	695334	0	T	C	consensus_score=252.4	frequency=1	major_base=C	major_cov=38/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/31
RA	77	.	NC_000913	799484	0	C	A	bias_e_value=0.554973	bias_p_value=1.19564e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.8	fisher_strand_p_value=5.99866e-09	frequency=2.532e-01	ks_quality_p_value=1	major_base=C	major_cov=17/42	major_frequency=7.468e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.532e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=17/42	total_cov=37/42
RA	78	.	NC_000913	847955	0	G	A	bias_e_value=0.0193648	bias_p_value=4.17197e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.5	fisher_strand_p_value=1.77911e-10	frequency=3.130e-01	ks_quality_p_value=1	major_base=G	major_cov=45/34	major_frequency=6.870e-01	minor_base=A	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.130e-01	polymorphism_score=46.7	prediction=polymorphism	ref_cov=45/34	total_cov=45/70
RA	79	.	NC_000913	901135	0	C	T	consensus_score=355.1	frequency=1	major_base=T	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	80	.	NC_000913	987152	0	G	T	bias_e_value=4043730	bias_p_value=0.871184	consensus_score=543.4	fisher_strand_p_value=0.537483	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=95/54	major_frequency=9.868e-01	minor_base=C	minor_cov=2/0	new_cov=95/54	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=97/54
RA	81	.	NC_000913	1001094	0	G	T	bias_e_value=34.6186	bias_p_value=7.45824e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.5	fisher_strand_p_value=4.79621e-07	frequency=2.481e-01	ks_quality_p_value=1	major_base=G	major_cov=48/49	major_frequency=7.519e-01	minor_base=T	minor_cov=1/31	new_cov=1/31	polymorphism_frequency=2.481e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=48/49	total_cov=49/80
RA	82	.	NC_000913	1097118	0	C	A	bias_e_value=4308090	bias_p_value=0.928137	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.7	fisher_strand_p_value=0.689282	frequency=2.368e-01	ks_quality_p_value=0.936753	major_base=C	major_cov=9/20	major_frequency=7.632e-01	minor_base=A	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.368e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=9/20	total_cov=13/25
RA	83	.	NC_000913	1097158	0	C	T	bias_e_value=1557940	bias_p_value=0.335643	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.2	fisher_strand_p_value=0.18453	frequency=2.581e-01	ks_quality_p_value=0.554654	major_base=C	major_cov=5/18	major_frequency=7.419e-01	minor_base=T	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=2.581e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=5/18	total_cov=9/22
RA	84	.	NC_000913	1190053	0	A	G	consensus_score=314.8	frequency=1	major_base=G	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	85	.	NC_000913	1223832	0	C	A	bias_e_value=33.4957	bias_p_value=7.21634e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.4	fisher_strand_p_value=4.63016e-07	frequency=2.613e-01	ks_quality_p_value=1	major_base=C	major_cov=38/44	major_frequency=7.387e-01	minor_base=A	minor_cov=28/1	new_cov=28/1	polymorphism_frequency=2.613e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=38/44	total_cov=66/45
RA	86	.	NC_000913	1286870	0	C	A	bias_e_value=801717	bias_p_value=0.172722	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.5	fisher_strand_p_value=0.0412384	frequency=2.025e-01	ks_quality_p_value=1	major_base=C	major_cov=20/43	major_frequency=7.975e-01	minor_base=A	minor_cov=10/6	new_cov=10/6	polymorphism_frequency=2.025e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=20/43	total_cov=30/49
RA	87	.	NC_000913	1334966	0	A	C	bias_e_value=1.55778	bias_p_value=3.35609e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.8	fisher_strand_p_value=1.78103e-08	frequency=2.609e-01	ks_quality_p_value=1	major_base=A	major_cov=54/48	major_frequency=7.391e-01	minor_base=C	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.609e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=54/48	total_cov=90/48
RA	88	.	NC_000913	1337394	0	A	G	bias_e_value=3689900	bias_p_value=0.794953	consensus_score=260.7	fisher_strand_p_value=0.432432	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=42/31	major_frequency=9.865e-01	minor_base=T	minor_cov=0/1	new_cov=42/31	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	89	.	NC_000913	1388189	0	C	A	bias_e_value=53.1805	bias_p_value=1.14572e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.7	fisher_strand_p_value=7.59211e-07	frequency=2.469e-01	ks_quality_p_value=1	major_base=C	major_cov=25/36	major_frequency=7.531e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.469e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=25/36	total_cov=45/36
RA	90	.	NC_000913	1502768	0	G	A	bias_e_value=1.12677	bias_p_value=2.42753e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.5	fisher_strand_p_value=1.2653e-08	frequency=2.377e-01	ks_quality_p_value=1	major_base=G	major_cov=50/43	major_frequency=7.623e-01	minor_base=A	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.377e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=50/43	total_cov=50/73
RA	91	.	NC_000913	1502770	0	T	C	bias_e_value=0.892085	bias_p_value=1.92191e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.8	fisher_strand_p_value=9.89062e-09	frequency=2.459e-01	ks_quality_p_value=1	major_base=T	major_cov=50/42	major_frequency=7.541e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.459e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=50/42	total_cov=50/72
RA	92	.	NC_000913	1502772	0	G	A	bias_e_value=0.0262103	bias_p_value=5.64677e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.2	fisher_strand_p_value=2.44095e-10	frequency=2.833e-01	ks_quality_p_value=1	major_base=G	major_cov=49/37	major_frequency=7.167e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.833e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=49/37	total_cov=49/71
RA	93	.	NC_000913	1565745	0	C	T	consensus_score=414.7	frequency=1	major_base=T	major_cov=63/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/53
RA	94	.	NC_000913	1594256	0	C	.	bias_e_value=2568220	bias_p_value=0.553299	consensus_score=495.8	fisher_strand_p_value=0.220126	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=48/56	major_frequency=9.811e-01	minor_base=C	minor_cov=2/0	new_cov=48/56	polymorphism_frequency=9.811e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=2/0	total_cov=50/56
RA	95	.	NC_000913	1631903	0	G	T	bias_e_value=0.845695	bias_p_value=1.82197e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.3	fisher_strand_p_value=9.3492e-09	frequency=2.632e-01	ks_quality_p_value=1	major_base=G	major_cov=43/27	major_frequency=7.368e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.632e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=43/27	total_cov=43/52
RA	96	.	NC_000913	1652331	0	T	C	consensus_score=443.3	frequency=1	major_base=C	major_cov=50/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/65
RA	97	.	NC_000913	1667887	0	C	.	consensus_score=492.2	frequency=1	major_base=.	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	98	.	NC_000913	1753680	0	G	A	consensus_score=441.9	frequency=1	major_base=A	major_cov=73/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/52
RA	99	.	NC_000913	1756353	0	C	A	bias_e_value=0.0643334	bias_p_value=1.386e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.9	fisher_strand_p_value=6.24492e-10	frequency=2.810e-01	ks_quality_p_value=1	major_base=C	major_cov=38/49	major_frequency=7.190e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.810e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=38/49	total_cov=72/49
RA	100	.	NC_000913	1779583	0	G	T	bias_e_value=0.00321208	bias_p_value=6.92013e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.5	fisher_strand_p_value=2.73273e-11	frequency=2.870e-01	ks_quality_p_value=1	major_base=G	major_cov=51/31	major_frequency=7.130e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.870e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=51/31	total_cov=51/64
RA	101	.	NC_000913	1812509	0	G	T	bias_e_value=0.000433201	bias_p_value=9.3329e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.5	fisher_strand_p_value=3.40547e-12	frequency=2.388e-01	ks_quality_p_value=1	major_base=G	major_cov=67/35	major_frequency=7.612e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.388e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=67/35	total_cov=67/67
RA	102	.	NC_000913	1817734	0	C	T	consensus_score=424.3	frequency=1	major_base=T	major_cov=59/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/58
RA	103	.	NC_000913	1848239	0	G	A	consensus_score=357.5	frequency=1	major_base=A	major_cov=43/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/58
RA	104	.	NC_000913	1922815	0	C	A	bias_e_value=124430	bias_p_value=0.0268073	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.8	fisher_strand_p_value=0.00413105	frequency=3.000e-01	ks_quality_p_value=1	major_base=C	major_cov=28/42	major_frequency=7.000e-01	minor_base=A	minor_cov=22/8	new_cov=22/8	polymorphism_frequency=3.000e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=28/42	total_cov=50/50
RA	105	.	NC_000913	2032423	0	G	A	bias_e_value=3890540	bias_p_value=0.838179	consensus_score=298.1	fisher_strand_p_value=0.488095	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/43	major_frequency=9.881e-01	minor_base=C	minor_cov=1/0	new_cov=40/43	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	106	.	NC_000913	2043522	0	C	A	consensus_score=340.6	frequency=1	major_base=A	major_cov=53/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/47
RA	107	.	NC_000913	2073613	0	G	T	bias_e_value=0.0366462	bias_p_value=7.89507e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.3	fisher_strand_p_value=3.46533e-10	frequency=3.023e-01	ks_quality_p_value=1	major_base=G	major_cov=41/19	major_frequency=6.977e-01	minor_base=T	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.023e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=41/19	total_cov=41/45
RA	108	.	NC_000913	2173363	0	C	.	bias_e_value=4634890	bias_p_value=0.998543	consensus_score=455.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.946501	major_base=.	major_cov=40/56	major_frequency=9.897e-01	minor_base=C	minor_cov=0/1	new_cov=40/56	polymorphism_frequency=9.897e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/1	total_cov=40/57
RA	109	.	NC_000913	2173364	0	C	.	bias_e_value=4634890	bias_p_value=0.998543	consensus_score=455.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.946501	major_base=.	major_cov=40/56	major_frequency=9.897e-01	minor_base=C	minor_cov=0/1	new_cov=40/56	polymorphism_frequency=9.897e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/1	total_cov=40/57
RA	110	.	NC_000913	2244442	0	C	A	bias_e_value=0.332481	bias_p_value=7.16299e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.1	fisher_strand_p_value=3.49914e-09	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=22/42	major_frequency=7.273e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.727e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=22/42	total_cov=46/42
RA	111	.	NC_000913	2286257	0	G	.	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=425.6	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=38/52	major_frequency=9.890e-01	minor_base=G	minor_cov=1/0	new_cov=38/52	polymorphism_frequency=9.890e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=39/52
RA	112	.	NC_000913	2288418	0	G	T	bias_e_value=0.00154286	bias_p_value=3.32395e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.1	fisher_strand_p_value=1.27422e-11	frequency=3.134e-01	ks_quality_p_value=1	major_base=G	major_cov=51/41	major_frequency=6.866e-01	minor_base=T	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=3.134e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=51/41	total_cov=51/83
RA	113	.	NC_000913	2319563	0	A	G	bias_e_value=1878990	bias_p_value=0.404811	consensus_score=441.4	fisher_strand_p_value=0.134739	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=75/42	major_frequency=9.832e-01	minor_base=T	minor_cov=0/2	new_cov=75/42	polymorphism_frequency=9.832e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/44
RA	114	.	NC_000913	2427716	0	C	A	bias_e_value=0.000148206	bias_p_value=3.19296e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.7	fisher_strand_p_value=1.11963e-12	frequency=3.091e-01	ks_quality_p_value=1	major_base=C	major_cov=25/51	major_frequency=6.909e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.091e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=25/51	total_cov=59/52
RA	115	.	NC_000913	2477265	0	A	C	bias_e_value=6.02439e-05	bias_p_value=1.2979e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.7	fisher_strand_p_value=4.40706e-13	frequency=2.609e-01	ks_quality_p_value=1	major_base=A	major_cov=13/55	major_frequency=7.391e-01	minor_base=C	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.609e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=13/55	total_cov=37/55
RA	116	.	NC_000913	2488630	0	A	T	consensus_score=317.2	frequency=1	major_base=T	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	117	.	NC_000913	2722838	0	G	T	bias_e_value=2.48301e-05	bias_p_value=5.3494e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.9	fisher_strand_p_value=1.76156e-13	frequency=3.190e-01	ks_quality_p_value=1	major_base=G	major_cov=53/26	major_frequency=6.810e-01	minor_base=T	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.190e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=53/26	total_cov=53/63
RA	118	.	NC_000913	2767445	0	C	A	bias_e_value=2.54835e-07	bias_p_value=5.49017e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.2	fisher_strand_p_value=1.56455e-15	frequency=3.293e-01	ks_quality_p_value=1	major_base=C	major_cov=7/48	major_frequency=6.707e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.293e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=7/48	total_cov=34/49
RA	119	.	NC_000913	2777445	0	G	A	consensus_score=253.8	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	120	.	NC_000913	2817991	0	A	C	bias_e_value=4502220	bias_p_value=0.969962	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.5	fisher_strand_p_value=0.765126	frequency=2.295e-01	ks_quality_p_value=1	major_base=A	major_cov=18/29	major_frequency=7.705e-01	minor_base=C	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=2.295e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=18/29	total_cov=24/37
RA	121	.	NC_000913	2818362	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=251.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/33	major_frequency=8.966e-01	minor_base=G	minor_cov=5/4	new_cov=45/33	polymorphism_frequency=8.966e-01	polymorphism_score=13.0	prediction=consensus	ref_cov=5/4	total_cov=51/37
RA	122	.	NC_000913	2867455	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=445.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=78/51	major_frequency=9.923e-01	minor_base=C	minor_cov=1/0	new_cov=78/51	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/51
RA	123	.	NC_000913	2876715	0	G	T	bias_e_value=0.000843928	bias_p_value=1.81816e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.0	fisher_strand_p_value=6.80624e-12	frequency=2.835e-01	ks_quality_p_value=1	major_base=G	major_cov=56/35	major_frequency=7.165e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.835e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=56/35	total_cov=56/71
RA	124	.	NC_000913	2990480	0	C	A	bias_e_value=5.64055e-08	bias_p_value=1.2152e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.9	fisher_strand_p_value=3.31637e-16	frequency=3.174e-01	ks_quality_p_value=1	major_base=C	major_cov=46/68	major_frequency=6.826e-01	minor_base=A	minor_cov=53/0	new_cov=53/0	polymorphism_frequency=3.174e-01	polymorphism_score=29.0	prediction=polymorphism	ref_cov=46/68	total_cov=99/68
RA	125	.	NC_000913	3054886	0	G	T	bias_e_value=0.000226719	bias_p_value=4.88445e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.4	fisher_strand_p_value=1.73964e-12	frequency=2.891e-01	ks_quality_p_value=1	major_base=G	major_cov=30/61	major_frequency=7.109e-01	minor_base=T	minor_cov=36/1	new_cov=36/1	polymorphism_frequency=2.891e-01	polymorphism_score=30.6	prediction=polymorphism	ref_cov=30/61	total_cov=66/63
RA	126	.	NC_000913	3054894	0	G	T	bias_e_value=0.0436706	bias_p_value=9.40842e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.3	fisher_strand_p_value=4.16309e-10	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=25/60	major_frequency=7.143e-01	minor_base=T	minor_cov=31/3	new_cov=31/3	polymorphism_frequency=2.857e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=25/60	total_cov=57/63
RA	127	.	NC_000913	3157420	0	C	A	bias_e_value=0.000112188	bias_p_value=2.41699e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.2	fisher_strand_p_value=8.39044e-13	frequency=2.437e-01	ks_quality_p_value=1	major_base=C	major_cov=26/64	major_frequency=7.563e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.437e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=26/64	total_cov=55/64
RA	128	.	NC_000913	3226224	0	G	T	bias_e_value=0.000148518	bias_p_value=3.19967e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.9	fisher_strand_p_value=1.12207e-12	frequency=2.806e-01	ks_quality_p_value=1	major_base=G	major_cov=60/40	major_frequency=7.194e-01	minor_base=T	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=2.806e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=60/40	total_cov=60/79
RA	129	.	NC_000913	3334781	0	C	T	consensus_score=435.9	frequency=1	major_base=T	major_cov=81/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/44
RA	130	.	NC_000913	3383189	0	G	A	bias_e_value=3590590	bias_p_value=0.773558	consensus_score=350.2	fisher_strand_p_value=0.407767	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=61/41	major_frequency=9.903e-01	minor_base=G	minor_cov=0/1	new_cov=61/41	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=61/42
RA	131	.	NC_000913	3401345	0	G	T	bias_e_value=0.146292	bias_p_value=3.15172e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.0	fisher_strand_p_value=1.47739e-09	frequency=3.211e-01	ks_quality_p_value=1	major_base=G	major_cov=40/34	major_frequency=6.789e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=3.211e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=40/34	total_cov=40/69
RA	132	.	NC_000913	3486205	0	C	A	consensus_score=379.0	frequency=1	major_base=A	major_cov=57/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/48
RA	133	.	NC_000913	3507249	0	C	T	consensus_score=270.4	frequency=1	major_base=T	major_cov=45/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/31
RA	134	.	NC_000913	3511420	0	C	T	bias_e_value=3764650	bias_p_value=0.811059	consensus_score=421.7	fisher_strand_p_value=0.452174	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/51	major_frequency=9.913e-01	minor_base=C	minor_cov=0/1	new_cov=63/51	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=63/52
RA	135	.	NC_000913	3511466	0	C	T	consensus_score=391.4	frequency=1	major_base=T	major_cov=54/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/52
RA	136	.	NC_000913	3515876	0	C	T	consensus_score=315.6	frequency=1	major_base=T	major_cov=52/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/33
RA	137	.	NC_000913	3533565	0	T	C	bias_e_value=4641260	bias_p_value=0.999915	consensus_score=319.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986987	major_base=C	major_cov=46/40	major_frequency=9.885e-01	minor_base=T	minor_cov=1/0	new_cov=46/40	polymorphism_frequency=9.885e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=47/40
RA	138	.	NC_000913	3535436	0	C	T	bias_e_value=3717360	bias_p_value=0.80087	consensus_score=316.3	fisher_strand_p_value=0.43956	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/39	major_frequency=9.890e-01	minor_base=G	minor_cov=0/1	new_cov=51/39	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/40
RA	139	.	NC_000913	3535837	0	G	A	consensus_score=327.0	frequency=1	major_base=A	major_cov=55/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/40
RA	140	.	NC_000913	3560455	1	.	G	consensus_score=400.3	frequency=1	major_base=G	major_cov=50/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/58
RA	141	.	NC_000913	3637843	0	G	C	bias_e_value=4641550	bias_p_value=0.999979	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.6	fisher_strand_p_value=1	frequency=2.143e-01	ks_quality_p_value=0.993528	major_base=G	major_cov=27/39	major_frequency=7.857e-01	minor_base=C	minor_cov=7/11	new_cov=7/11	polymorphism_frequency=2.143e-01	polymorphism_score=55.6	prediction=polymorphism	ref_cov=27/39	total_cov=34/51
RA	142	.	NC_000913	3707476	0	C	A	consensus_score=324.0	frequency=1	major_base=A	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	143	.	NC_000913	3741871	0	G	T	bias_e_value=7.5484e-05	bias_p_value=1.62623e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.5	fisher_strand_p_value=5.56606e-13	frequency=2.705e-01	ks_quality_p_value=1	major_base=G	major_cov=61/28	major_frequency=7.295e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.705e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=61/28	total_cov=61/61
RA	144	.	NC_000913	3775096	0	T	A	consensus_score=382.8	frequency=1	major_base=A	major_cov=42/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/65
RA	145	.	NC_000913	3775130	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=334.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/63	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=34/63	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=34/64
RA	146	.	NC_000913	3843750	0	C	A	bias_e_value=38.2515	bias_p_value=8.24093e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.9	fisher_strand_p_value=5.33615e-07	frequency=2.450e-01	ks_quality_p_value=1	major_base=C	major_cov=71/43	major_frequency=7.550e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.450e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=71/43	total_cov=110/43
RA	147	.	NC_000913	3888347	0	G	T	bias_e_value=3888200	bias_p_value=0.837676	consensus_score=405.1	fisher_strand_p_value=0.487395	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=61/57	major_frequency=9.916e-01	minor_base=G	minor_cov=0/1	new_cov=61/57	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=61/58
RA	148	.	NC_000913	3911533	0	C	A	bias_e_value=1.62078e-05	bias_p_value=3.49183e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.3	fisher_strand_p_value=1.1334e-13	frequency=4.122e-01	ks_quality_p_value=1	major_base=C	major_cov=34/43	major_frequency=5.878e-01	minor_base=A	minor_cov=54/0	new_cov=54/0	polymorphism_frequency=4.122e-01	polymorphism_score=31.2	prediction=polymorphism	ref_cov=34/43	total_cov=88/43
RA	149	.	NC_000913	3937793	0	C	T	consensus_score=332.5	frequency=1	major_base=T	major_cov=40/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/51
RA	150	.	NC_000913	3966643	0	C	T	consensus_score=468.7	frequency=1	major_base=T	major_cov=54/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/76
RA	151	.	NC_000913	3967134	0	G	T	consensus_score=323.5	frequency=1	major_base=T	major_cov=38/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/52
RA	152	.	NC_000913	4213310	0	G	T	bias_e_value=0.0332591	bias_p_value=7.16537e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.8	fisher_strand_p_value=3.1311e-10	frequency=2.828e-01	ks_quality_p_value=1	major_base=G	major_cov=46/25	major_frequency=7.172e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.828e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=46/25	total_cov=46/53
RA	153	.	NC_000913	4279875	0	A	T	bias_e_value=3654400	bias_p_value=0.787306	consensus_score=377.4	fisher_strand_p_value=0.423423	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/64	major_frequency=9.910e-01	minor_base=C	minor_cov=1/0	new_cov=46/64	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/64
RA	154	.	NC_000913	4296268	0	T	C	bias_e_value=2686650	bias_p_value=0.578814	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.1	fisher_strand_p_value=0.237421	frequency=2.903e-01	ks_quality_p_value=1	major_base=T	major_cov=11/11	major_frequency=7.097e-01	minor_base=C	minor_cov=7/2	new_cov=7/2	polymorphism_frequency=2.903e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=11/11	total_cov=18/13
RA	155	.	NC_000913	4296380	1	.	C	bias_e_value=4641650	bias_p_value=1	consensus_score=149.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=28/21	major_frequency=9.608e-01	minor_base=T	minor_cov=1/1	new_cov=28/21	polymorphism_frequency=9.608e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=30/22
RA	156	.	NC_000913	4296380	2	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=158.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=29/22	major_frequency=9.808e-01	minor_base=T	minor_cov=1/0	new_cov=29/22	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/22
RA	157	.	NC_000913	4315040	0	G	T	bias_e_value=3868310	bias_p_value=0.83339	consensus_score=186.3	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/25	major_frequency=9.815e-01	minor_base=G	minor_cov=0/1	new_cov=28/25	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/26
RA	158	.	NC_000913	4347395	0	A	T	consensus_score=295.1	frequency=1	major_base=T	major_cov=34/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/55
RA	159	.	NC_000913	4360965	0	C	A	bias_e_value=8.18587e-12	bias_p_value=1.76357e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=353.2	fisher_strand_p_value=3.8589e-20	frequency=2.948e-01	ks_quality_p_value=1	major_base=C	major_cov=37/85	major_frequency=7.052e-01	minor_base=A	minor_cov=51/0	new_cov=51/0	polymorphism_frequency=2.948e-01	polymorphism_score=20.5	prediction=polymorphism	ref_cov=37/85	total_cov=88/85
RA	160	.	NC_000913	4413516	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=354.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=65/41	major_frequency=9.907e-01	minor_base=A	minor_cov=1/0	new_cov=65/41	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/41
RA	161	.	NC_000913	4423824	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=247.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/35	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=29/35	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/37
RA	162	.	NC_000913	4423825	0	C	T	consensus_score=246.2	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	163	.	NC_000913	4427822	0	C	A	bias_e_value=0.000997192	bias_p_value=2.14836e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.2	fisher_strand_p_value=8.09485e-12	frequency=3.585e-01	ks_quality_p_value=1	major_base=C	major_cov=26/42	major_frequency=6.415e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.585e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=26/42	total_cov=64/42
MC	164	.	NC_000913	257908	258683	766	0	left_inside_cov=0	left_outside_cov=128	right_inside_cov=2	right_outside_cov=130
MC	165	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=96	right_inside_cov=0	right_outside_cov=137
MC	166	.	NC_000913	2101940	2115038	1008	0	left_inside_cov=33	left_outside_cov=34	right_inside_cov=0	right_outside_cov=159
MC	167	.	NC_000913	3423822	3424477	412	239	left_inside_cov=33	left_outside_cov=34	right_inside_cov=33	right_outside_cov=34
MC	168	.	NC_000913	3682261	3682294	0	0	left_inside_cov=0	left_outside_cov=97	right_inside_cov=0	right_outside_cov=98
JC	169	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=46	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=293	max_left_minus=293	max_left_plus=243	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=146	max_min_right_minus=142	max_min_right_plus=146	max_pos_hash_score=590	max_right=290	max_right_minus=287	max_right_plus=290	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.02	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102
JC	170	.	NC_000913	129668	-1	NC_000913	129861	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.672e-02	junction_possible_overlap_registers=285	key=NC_000913__129668__-1__NC_000913__129852__1__9____300__300__0__0	max_left=285	max_left_minus=285	max_left_plus=188	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=110	max_min_right_minus=6	max_min_right_plus=110	max_pos_hash_score=572	max_right=110	max_right_minus=6	max_right_plus=110	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=5.672e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=5
JC	171	.	NC_000913	129722	-1	NC_000913	129819	1	0	alignment_overlap=16	coverage_minus=6	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=9.394e-02	junction_possible_overlap_registers=278	key=NC_000913__129722__-1__NC_000913__129803__1__16____300__300__0__0	max_left=263	max_left_minus=263	max_left_plus=132	max_min_left=132	max_min_left_minus=40	max_min_left_plus=132	max_min_right=130	max_min_right_minus=130	max_min_right_plus=0	max_pos_hash_score=558	max_right=244	max_right_minus=244	max_right_plus=152	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=9.394e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=7
JC	172	.	NC_000913	194729	1	NC_000913	4502090	1	0	alignment_overlap=1	coverage_minus=50	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__194729__1__NC_000913__4502089__1__1____300__300__0__0	max_left=296	max_left_minus=261	max_left_plus=296	max_min_left=142	max_min_left_minus=142	max_min_left_plus=140	max_min_right=147	max_min_right_minus=147	max_min_right_plus=138	max_pos_hash_score=588	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.98	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=13	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=281	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=97
JC	173	.	NC_000913	194741	-1	NC_000913	4503515	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__194741__-1__NC_000913__4503515__-1__0____300__300__0__0	max_left=297	max_left_minus=283	max_left_plus=297	max_min_left=143	max_min_left_minus=143	max_min_left_plus=135	max_min_right=150	max_min_right_minus=150	max_min_right_plus=142	max_pos_hash_score=590	max_right=293	max_right_minus=293	max_right_plus=287	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	read_count_offset=13	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=281	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=99
JC	174	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=52	coverage_plus=72	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=287	max_min_left=120	max_min_left_minus=104	max_min_left_plus=120	max_min_right=144	max_min_right_minus=131	max_min_right_plus=144	max_pos_hash_score=574	max_right=283	max_right_minus=283	max_right_plus=280	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.32	new_junction_read_count=128	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=124
JC	175	.	NC_000913	257908	1	NC_000913	526915	1	0	alignment_overlap=1	coverage_minus=48	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__257908__1__NC_000913__526914__1__1____300__300__1__0	max_left=293	max_left_minus=286	max_left_plus=293	max_min_left=148	max_min_left_minus=139	max_min_left_plus=148	max_min_right=138	max_min_right_minus=138	max_min_right_plus=136	max_pos_hash_score=588	max_right=293	max_right_minus=293	max_right_plus=292	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	176	.	NC_000913	257908	1	NC_000913	1302240	-1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__257908__1__NC_000913__1302240__-1__0____300__300__1__0	max_left=294	max_left_minus=286	max_left_plus=294	max_min_left=149	max_min_left_minus=149	max_min_left_plus=125	max_min_right=139	max_min_right_minus=139	max_min_right_plus=133	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=285	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.81	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=81
JC	177	.	NC_000913	258675	-1	NC_000913	526923	-1	0	alignment_overlap=1	coverage_minus=33	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__258675__-1__NC_000913__526924__-1__1____300__300__1__0	max_left=292	max_left_minus=257	max_left_plus=292	max_min_left=146	max_min_left_minus=146	max_min_left_plus=144	max_min_right=148	max_min_right_minus=147	max_min_right_plus=148	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=284	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.80	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=78
JC	178	.	NC_000913	258675	-1	NC_000913	1302233	1	0	alignment_overlap=0	coverage_minus=75	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__258675__-1__NC_000913__1302233__1__0____300__300__1__0	max_left=291	max_left_minus=291	max_left_plus=289	max_min_left=137	max_min_left_minus=137	max_min_left_plus=130	max_min_right=148	max_min_right_minus=148	max_min_right_plus=127	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=290	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=116	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=112
JC	179	.	NC_000913	295882	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=59	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__295882__1__NC_000913__382590__-1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=294	max_min_left=146	max_min_left_minus=133	max_min_left_plus=146	max_min_right=147	max_min_right_minus=147	max_min_right_plus=141	max_pos_hash_score=590	max_right=284	max_right_minus=272	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.18	new_junction_read_count=118	polymorphism_frequency=9.667e-01	pos_hash_score=73	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=118
JC	180	.	NC_000913	295886	-1	NC_000913	381260	1	0	alignment_overlap=2	coverage_minus=41	coverage_plus=75	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__295888__-1__NC_000913__381260__1__2____300__300__0__1	max_left=294	max_left_minus=294	max_left_plus=294	max_min_left=137	max_min_left_minus=130	max_min_left_plus=137	max_min_right=149	max_min_right_minus=149	max_min_right_plus=145	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=287	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=116
JC	181	.	NC_000913	381260	1	NC_000913	382183	-1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=294	key=NC_000913__381260__1__NC_000913__382183__-1__0____300__300__1__1	max_left=297	max_left_minus=295	max_left_plus=297	max_min_left=143	max_min_left_minus=143	max_min_left_plus=138	max_min_right=149	max_min_right_minus=139	max_min_right_plus=149	max_pos_hash_score=590	max_right=294	max_right_minus=294	max_right_plus=273	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.77	new_junction_read_count=77	polymorphism_frequency=NA	pos_hash_score=52	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=75
JC	182	.	NC_000913	381260	1	NC_000913	855889	1	0	alignment_overlap=2	coverage_minus=46	coverage_plus=34	flanking_left=300	flanking_right=300	frequency=6.613e-01	junction_possible_overlap_registers=292	key=NC_000913__381260__1__NC_000913__855887__1__2____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=294	max_min_left=141	max_min_left_minus=141	max_min_left_plus=130	max_min_right=135	max_min_right_minus=135	max_min_right_plus=130	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=279	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=82	polymorphism_frequency=6.613e-01	pos_hash_score=57	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.42	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=80
JC	183	.	NC_000913	381260	1	NC_000913	1105376	1	0	alignment_overlap=1	coverage_minus=45	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__381260__1__NC_000913__1105375__1__1____300__300__1__0	max_left=297	max_left_minus=297	max_left_plus=295	max_min_left=136	max_min_left_minus=136	max_min_left_plus=124	max_min_right=140	max_min_right_minus=140	max_min_right_plus=136	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=294	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.86	new_junction_read_count=86	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	184	.	NC_000913	382179	1	NC_000913	382590	-1	0	alignment_overlap=2	coverage_minus=36	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=292	key=NC_000913__382177__1__NC_000913__382590__-1__2____300__300__1__1	max_left=288	max_left_minus=288	max_left_plus=263	max_min_left=139	max_min_left_minus=137	max_min_left_plus=139	max_min_right=145	max_min_right_minus=145	max_min_right_plus=137	max_pos_hash_score=586	max_right=290	max_right_minus=290	max_right_plus=279	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.57	new_junction_read_count=57	polymorphism_frequency=NA	pos_hash_score=43	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=56
JC	185	.	NC_000913	382590	-1	NC_000913	855893	-1	0	alignment_overlap=0	coverage_minus=60	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=7.246e-01	junction_possible_overlap_registers=294	key=NC_000913__382590__-1__NC_000913__855893__-1__0____300__300__1__0	max_left=279	max_left_minus=279	max_left_plus=276	max_min_left=147	max_min_left_minus=147	max_min_left_plus=123	max_min_right=140	max_min_right_minus=140	max_min_right_plus=139	max_pos_hash_score=590	max_right=298	max_right_minus=295	max_right_plus=298	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.00	new_junction_read_count=100	polymorphism_frequency=7.246e-01	pos_hash_score=68	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.38	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=100
JC	186	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.528e-01	junction_possible_overlap_registers=216	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=165	max_left_minus=165	max_left_plus=165	max_min_left=52	max_min_left_minus=52	max_min_left_plus=52	max_min_right=55	max_min_right_minus=23	max_min_right_plus=55	max_pos_hash_score=434	max_right=121	max_right_minus=121	max_right_plus=121	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.15	new_junction_read_count=11	polymorphism_frequency=1.528e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=10
JC	187	.	NC_000913	781282	-1	NC_000913	781771	1	0	alignment_overlap=8	coverage_minus=5	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.454e-01	junction_possible_overlap_registers=286	key=NC_000913__781282__-1__NC_000913__781763__1__8____300__300__0__0	max_left=276	max_left_minus=276	max_left_plus=244	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=79	max_min_right_minus=69	max_min_right_plus=79	max_pos_hash_score=574	max_right=180	max_right_minus=136	max_right_plus=180	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.12	new_junction_read_count=12	polymorphism_frequency=1.454e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=12
JC	188	.	NC_000913	781369	1	NC_000913	2521006	-1	-2	alignment_overlap=-2	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.997e-02	junction_possible_overlap_registers=292	key=NC_000913__781369__1__NC_000913__2521006__-1__-2__GG__300__300__0__0	max_left=166	max_left_minus=166	max_left_plus=103	max_min_left=48	max_min_left_minus=0	max_min_left_plus=48	max_min_right=76	max_min_right_minus=76	max_min_right_plus=45	max_pos_hash_score=586	max_right=247	max_right_minus=76	max_right_plus=247	neg_log10_pos_hash_p_value=9.5	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=7.997e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GG
JC	189	.	NC_000913	1105380	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=70	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1105380__-1__NC_000913__1467910__1__0____300__300__0__1	max_left=295	max_left_minus=293	max_left_plus=295	max_min_left=146	max_min_left_minus=146	max_min_left_plus=145	max_min_right=150	max_min_right_minus=150	max_min_right_plus=149	max_pos_hash_score=590	max_right=289	max_right_minus=289	max_right_plus=276	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.18	new_junction_read_count=118	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=114
JC	190	.	NC_000913	1166125	-1	NC_000913	1166621	1	0	alignment_overlap=15	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.000e-02	junction_possible_overlap_registers=279	key=NC_000913__1166125__-1__NC_000913__1166606__1__15____300__300__0__0	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=43	max_min_left_minus=43	max_min_left_plus=43	max_min_right=19	max_min_right_minus=17	max_min_right_plus=19	max_pos_hash_score=560	max_right=55	max_right_minus=55	max_right_plus=55	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=6.000e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=15	side_1_possible_overlap_registers=294	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=5
JC	191	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=43	coverage_plus=34	flanking_left=300	flanking_right=300	frequency=6.108e-01	junction_possible_overlap_registers=278	key=NC_000913__1207790__1__NC_000913__1209603__1__16____300__300__0__0	max_left=279	max_left_minus=271	max_left_plus=279	max_min_left=139	max_min_left_minus=136	max_min_left_plus=139	max_min_right=140	max_min_right_minus=134	max_min_right_plus=140	max_pos_hash_score=558	max_right=280	max_right_minus=263	max_right_plus=280	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.83	new_junction_read_count=78	polymorphism_frequency=6.108e-01	pos_hash_score=50	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=77
JC	192	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=20	coverage_plus=22	flanking_left=300	flanking_right=300	frequency=4.546e-01	junction_possible_overlap_registers=278	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____300__300__0__0	max_left=282	max_left_minus=282	max_left_plus=278	max_min_left=131	max_min_left_minus=131	max_min_left_plus=92	max_min_right=122	max_min_right_minus=65	max_min_right_plus=122	max_pos_hash_score=558	max_right=262	max_right_minus=262	max_right_plus=241	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.46	new_junction_read_count=43	polymorphism_frequency=4.546e-01	pos_hash_score=32	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=42
JC	193	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.648e-02	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=258	max_left_minus=258	max_left_plus=231	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=49	max_min_right_minus=21	max_min_right_plus=49	max_pos_hash_score=550	max_right=276	max_right_minus=21	max_right_plus=276	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=9.648e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.53	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=5
JC	194	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.091e-01	junction_possible_overlap_registers=274	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=266	max_left_minus=266	max_left_plus=163	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=100	max_min_right_minus=1	max_min_right_plus=100	max_pos_hash_score=550	max_right=276	max_right_minus=1	max_right_plus=276	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=1.091e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.35	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.53	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=4
JC	195	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=72	coverage_plus=82	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=294	max_min_left=146	max_min_left_minus=139	max_min_left_plus=146	max_min_right=143	max_min_right_minus=143	max_min_right_plus=140	max_pos_hash_score=582	max_right=295	max_right_minus=292	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.60	new_junction_read_count=158	polymorphism_frequency=9.969e-01	pos_hash_score=81	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=154
JC	196	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=294	max_left_minus=273	max_left_plus=294	max_min_left=146	max_min_left_minus=146	max_min_left_plus=142	max_min_right=149	max_min_right_minus=135	max_min_right_plus=149	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=295	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.96	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=95
JC	197	.	NC_000913	1411899	1	NC_000913	1434958	-1	0	alignment_overlap=26	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=4.336e-02	junction_possible_overlap_registers=268	key=NC_000913__1411899__1__NC_000913__1434984__-1__26____300__300__0__0	max_left=245	max_left_minus=162	max_left_plus=245	max_min_left=83	max_min_left_minus=48	max_min_left_plus=83	max_min_right=111	max_min_right_minus=111	max_min_right_plus=86	max_pos_hash_score=538	max_right=226	max_right_minus=226	max_right_plus=191	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=4.336e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.27	side_1_overlap=26	side_1_possible_overlap_registers=294	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.64	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=149	side_2_redundant=0	total_non_overlap_reads=6
JC	198	.	NC_000913	1464205	1	NC_000913	3720633	1	0	alignment_overlap=0	coverage_minus=36	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1464205__1__NC_000913__3720633__1__0____300__300__0__0	max_left=297	max_left_minus=297	max_left_plus=295	max_min_left=138	max_min_left_minus=134	max_min_left_plus=138	max_min_right=149	max_min_right_minus=149	max_min_right_plus=147	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=297	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.98	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=95
JC	199	.	NC_000913	1464207	-1	NC_000913	3722075	-1	0	alignment_overlap=0	coverage_minus=50	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1464207__-1__NC_000913__3722075__-1__0____300__300__0__0	max_left=298	max_left_minus=270	max_left_plus=298	max_min_left=139	max_min_left_minus=139	max_min_left_plus=138	max_min_right=146	max_min_right_minus=142	max_min_right_plus=146	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=297	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=1.01	new_junction_read_count=101	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=99
JC	200	.	NC_000913	1467910	1	NC_000913	1494484	1	0	alignment_overlap=0	coverage_minus=66	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1467910__1__NC_000913__1494484__1__0____300__300__1__0	max_left=288	max_left_minus=279	max_left_plus=288	max_min_left=149	max_min_left_minus=149	max_min_left_plus=146	max_min_right=141	max_min_right_minus=141	max_min_right_plus=123	max_pos_hash_score=590	max_right=295	max_right_minus=275	max_right_plus=295	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=101
JC	201	.	NC_000913	1469240	-1	NC_000913	1494488	-1	0	alignment_overlap=1	coverage_minus=51	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1469240__-1__NC_000913__1494489__-1__1____300__300__1__0	max_left=296	max_left_minus=296	max_left_plus=295	max_min_left=134	max_min_left_minus=134	max_min_left_plus=105	max_min_right=137	max_min_right_minus=137	max_min_right_plus=129	max_pos_hash_score=588	max_right=295	max_right_minus=293	max_right_plus=295	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.97	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	202	.	NC_000913	1743451	1	NC_000913	4502090	1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1743451__1__NC_000913__4502090__1__0____300__300__0__0	max_left=294	max_left_minus=282	max_left_plus=294	max_min_left=149	max_min_left_minus=135	max_min_left_plus=149	max_min_right=144	max_min_right_minus=144	max_min_right_plus=140	max_pos_hash_score=590	max_right=298	max_right_minus=296	max_right_plus=298	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.95	new_junction_read_count=95	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=12	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=282	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=92
JC	203	.	NC_000913	1743462	-1	NC_000913	4503515	-1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1743462__-1__NC_000913__4503515__-1__0____300__300__0__0	max_left=294	max_left_minus=254	max_left_plus=294	max_min_left=147	max_min_left_minus=146	max_min_left_plus=147	max_min_right=149	max_min_right_minus=149	max_min_right_plus=146	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=297	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.91	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=12	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=282	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=87
JC	204	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=56	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____300__300__1__0	max_left=297	max_left_minus=286	max_left_plus=297	max_min_left=138	max_min_left_minus=138	max_min_left_plus=136	max_min_right=141	max_min_right_minus=140	max_min_right_plus=141	max_pos_hash_score=588	max_right=297	max_right_minus=290	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.14	new_junction_read_count=113	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=111
JC	205	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=53	coverage_plus=32	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____300__300__1__0	max_left=292	max_left_minus=292	max_left_plus=277	max_min_left=147	max_min_left_minus=147	max_min_left_plus=147	max_min_right=149	max_min_right_minus=140	max_min_right_plus=149	max_pos_hash_score=590	max_right=297	max_right_minus=285	max_right_plus=297	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.85	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85
JC	206	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=56	coverage_plus=80	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=299	max_left_minus=294	max_left_plus=299	max_min_left=145	max_min_left_minus=137	max_min_left_plus=145	max_min_right=150	max_min_right_minus=150	max_min_right_plus=134	max_pos_hash_score=590	max_right=299	max_right_minus=299	max_right_plus=294	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.37	new_junction_read_count=137	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=136
JC	207	.	NC_000913	2068941	1	NC_000913	2316421	1	0	alignment_overlap=0	coverage_minus=75	coverage_plus=34	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2068941__1__NC_000913__2316421__1__0____300__300__1__0	max_left=296	max_left_minus=258	max_left_plus=296	max_min_left=149	max_min_left_minus=149	max_min_left_plus=147	max_min_right=146	max_min_right_minus=146	max_min_right_plus=112	max_pos_hash_score=590	max_right=298	max_right_minus=296	max_right_plus=298	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=109
JC	208	.	NC_000913	2102943	-1	NC_000913	2115039	1	0	alignment_overlap=0	coverage_minus=93	coverage_plus=63	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2102943__-1__NC_000913__2115039__1__0____300__300__1__0	max_left=283	max_left_minus=283	max_left_plus=277	max_min_left=147	max_min_left_minus=146	max_min_left_plus=147	max_min_right=149	max_min_right_minus=149	max_min_right_plus=143	max_pos_hash_score=590	max_right=295	max_right_minus=282	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.59	new_junction_read_count=159	polymorphism_frequency=1.000e+00	pos_hash_score=90	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=156
JC	209	.	NC_000913	2288919	1	NC_000913	3262447	1	0	alignment_overlap=0	coverage_minus=60	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2288919__1__NC_000913__3262447__1__0____300__300__1__0	max_left=268	max_left_minus=268	max_left_plus=266	max_min_left=146	max_min_left_minus=146	max_min_left_plus=139	max_min_right=147	max_min_right_minus=131	max_min_right_plus=147	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=291	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=117	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=115
JC	210	.	NC_000913	2290113	-1	NC_000913	3262450	-1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2290113__-1__NC_000913__3262450__-1__0____300__300__1__0	max_left=287	max_left_minus=287	max_left_plus=280	max_min_left=149	max_min_left_minus=114	max_min_left_plus=149	max_min_right=150	max_min_right_minus=149	max_min_right_plus=150	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=295	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.87	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	211	.	NC_000913	2316425	-1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=61	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2316425__-1__NC_000913__2997691__-1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=295	max_min_left=139	max_min_left_minus=139	max_min_left_plus=138	max_min_right=143	max_min_right_minus=103	max_min_right_plus=143	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.07	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=103
JC	212	.	NC_000913	2357730	-1	NC_000913	2357926	1	0	alignment_overlap=40	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.523e-02	junction_possible_overlap_registers=254	key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0	max_left=253	max_left_minus=154	max_left_plus=253	max_min_left=86	max_min_left_minus=86	max_min_left_plus=80	max_min_right=129	max_min_right_minus=129	max_min_right_plus=108	max_pos_hash_score=510	max_right=205	max_right_minus=174	max_right_plus=205	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=6.523e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=40	side_1_possible_overlap_registers=294	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=7
JC	213	.	NC_000913	2357742	-1	NC_000913	2357938	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=3.656e-02	junction_possible_overlap_registers=283	key=NC_000913__2357742__-1__NC_000913__2357927__1__11____300__300__0__0	max_left=206	max_left_minus=202	max_left_plus=206	max_min_left=49	max_min_left_minus=0	max_min_left_plus=49	max_min_right=123	max_min_right_minus=87	max_min_right_plus=123	max_pos_hash_score=568	max_right=173	max_right_minus=87	max_right_plus=173	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.656e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=4
JC	214	.	NC_000913	2594860	1	NC_000913	4503515	-1	0	alignment_overlap=1	coverage_minus=32	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2594859__1__NC_000913__4503515__-1__1____300__300__0__0	max_left=294	max_left_minus=256	max_left_plus=294	max_min_left=147	max_min_left_minus=147	max_min_left_plus=143	max_min_right=145	max_min_right_minus=145	max_min_right_plus=145	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=283	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.71	new_junction_read_count=71	polymorphism_frequency=8.103e-01	pos_hash_score=51	prediction=consensus	read_count_offset=11	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.17	side_1_overlap=0	side_1_possible_overlap_registers=282	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=70
JC	215	.	NC_000913	2594870	-1	NC_000913	4502090	1	0	alignment_overlap=3	coverage_minus=28	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=7.906e-01	junction_possible_overlap_registers=291	key=NC_000913__2594870__-1__NC_000913__4502087__1__3____300__300__0__0	max_left=289	max_left_minus=258	max_left_plus=289	max_min_left=147	max_min_left_minus=147	max_min_left_plus=141	max_min_right=147	max_min_right_minus=147	max_min_right_plus=99	max_pos_hash_score=584	max_right=282	max_right_minus=258	max_right_plus=282	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.67	new_junction_read_count=66	polymorphism_frequency=7.906e-01	pos_hash_score=49	prediction=polymorphism	read_count_offset=11	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=3	side_1_possible_overlap_registers=283	side_1_read_count=17	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=66
JC	216	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=7.770e-02	junction_possible_overlap_registers=269	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=217	max_left_minus=217	max_left_plus=212	max_min_left=82	max_min_left_minus=82	max_min_left_plus=13	max_min_right=104	max_min_right_minus=104	max_min_right_plus=104	max_pos_hash_score=540	max_right=262	max_right_minus=193	max_right_plus=262	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=7.770e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=8
JC	217	.	NC_000913	2736907	1	NC_000913	4503515	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=98	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2736907__1__NC_000913__4503515__-1__0____300__300__0__0	max_left=296	max_left_minus=287	max_left_plus=296	max_min_left=145	max_min_left_minus=94	max_min_left_plus=145	max_min_right=149	max_min_right_minus=142	max_min_right_plus=149	max_pos_hash_score=590	max_right=299	max_right_minus=296	max_right_plus=299	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.42	new_junction_read_count=142	polymorphism_frequency=9.927e-01	pos_hash_score=68	prediction=consensus	read_count_offset=14	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=280	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=142
JC	218	.	NC_000913	2736920	-1	NC_000913	4502090	1	0	alignment_overlap=3	coverage_minus=44	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__2736920__-1__NC_000913__4502087__1__3____300__300__0__0	max_left=292	max_left_minus=289	max_left_plus=292	max_min_left=142	max_min_left_minus=142	max_min_left_plus=138	max_min_right=145	max_min_right_minus=145	max_min_right_plus=138	max_pos_hash_score=584	max_right=294	max_right_minus=288	max_right_plus=294	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.89	new_junction_read_count=88	polymorphism_frequency=9.883e-01	pos_hash_score=53	prediction=consensus	read_count_offset=14	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=3	side_1_possible_overlap_registers=280	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=88
JC	219	.	NC_000913	2753981	1	NC_000913	4502090	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=1.700e-01	junction_possible_overlap_registers=294	key=NC_000913__2753981__1__NC_000913__4502090__1__0____300__300__0__0	max_left=291	max_left_minus=251	max_left_plus=291	max_min_left=133	max_min_left_minus=133	max_min_left_plus=68	max_min_right=144	max_min_right_minus=144	max_min_right_plus=135	max_pos_hash_score=590	max_right=297	max_right_minus=167	max_right_plus=297	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.17	new_junction_read_count=17	polymorphism_frequency=1.700e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=15
JC	220	.	NC_000913	2753991	-1	NC_000913	4503515	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.340e-01	junction_possible_overlap_registers=294	key=NC_000913__2753991__-1__NC_000913__4503515__-1__0____300__300__0__0	max_left=294	max_left_minus=216	max_left_plus=294	max_min_left=144	max_min_left_minus=144	max_min_left_plus=144	max_min_right=122	max_min_right_minus=122	max_min_right_plus=6	max_pos_hash_score=590	max_right=287	max_right_minus=204	max_right_plus=287	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.13	new_junction_read_count=13	polymorphism_frequency=1.340e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=13
JC	221	.	NC_000913	2817942	-1	NC_000913	2818492	1	0	alignment_overlap=20	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.495e-02	junction_possible_overlap_registers=274	key=NC_000913__2817942__-1__NC_000913__2818472__1__20____300__300__0__0	max_left=254	max_left_minus=236	max_left_plus=254	max_min_left=88	max_min_left_minus=88	max_min_left_plus=39	max_min_right=115	max_min_right_minus=46	max_min_right_plus=115	max_pos_hash_score=550	max_right=241	max_right_minus=192	max_right_plus=241	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=9.495e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.66	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=91	side_2_redundant=0	total_non_overlap_reads=7
JC	222	.	NC_000913	2947467	-1	NC_000913	2947688	1	0	alignment_overlap=83	coverage_minus=2	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.543e-01	junction_possible_overlap_registers=211	key=NC_000913__2947467__-1__NC_000913__2947605__1__83____300__300__0__0	max_left=153	max_left_minus=153	max_left_plus=145	max_min_left=84	max_min_left_minus=18	max_min_left_plus=84	max_min_right=72	max_min_right_minus=64	max_min_right_plus=72	max_pos_hash_score=424	max_right=199	max_right_minus=199	max_right_plus=133	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.11	new_junction_read_count=8	polymorphism_frequency=1.543e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=83	side_1_possible_overlap_registers=294	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=8
JC	223	.	NC_000913	2961992	-1	NC_000913	2962305	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.475e-02	junction_possible_overlap_registers=283	key=NC_000913__2961992__-1__NC_000913__2962294__1__11____300__300__0__0	max_left=147	max_left_minus=147	max_left_plus=147	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=122	max_min_right_minus=122	max_min_right_plus=122	max_pos_hash_score=568	max_right=122	max_right_minus=122	max_right_plus=122	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.475e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=4
JC	224	.	NC_000913	3186096	1	NC_000913	4353014	-1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.324e-01	junction_possible_overlap_registers=293	key=NC_000913__3186096__1__NC_000913__4353015__-1__1____300__300__1__0	max_left=268	max_left_minus=262	max_left_plus=268	max_min_left=136	max_min_left_minus=136	max_min_left_plus=1	max_min_right=147	max_min_right_minus=132	max_min_right_plus=147	max_pos_hash_score=588	max_right=298	max_right_minus=294	max_right_plus=298	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.18	new_junction_read_count=18	polymorphism_frequency=1.324e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=17
JC	225	.	NC_000913	3187426	-1	NC_000913	3737137	1	0	alignment_overlap=1	coverage_minus=65	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3187426__-1__NC_000913__3737136__1__1____300__300__1__0	max_left=279	max_left_minus=278	max_left_plus=279	max_min_left=149	max_min_left_minus=148	max_min_left_plus=149	max_min_right=148	max_min_right_minus=148	max_min_right_plus=148	max_pos_hash_score=588	max_right=294	max_right_minus=292	max_right_plus=294	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.11	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=110
JC	226	.	NC_000913	3187426	-1	NC_000913	4353010	1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=1.111e-01	junction_possible_overlap_registers=293	key=NC_000913__3187426__-1__NC_000913__4353009__1__1____300__300__1__0	max_left=296	max_left_minus=238	max_left_plus=296	max_min_left=138	max_min_left_minus=138	max_min_left_plus=71	max_min_right=113	max_min_right_minus=113	max_min_right_plus=92	max_pos_hash_score=588	max_right=284	max_right_minus=160	max_right_plus=284	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.15	new_junction_read_count=15	polymorphism_frequency=1.111e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=120	side_2_redundant=0	total_non_overlap_reads=15
JC	227	.	NC_000913	3270072	1	NC_000913	4137788	1	-25	alignment_overlap=-25	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.914e-02	junction_possible_overlap_registers=269	key=NC_000913__3270072__1__NC_000913__4137788__1__-25__CAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0	max_left=255	max_left_minus=252	max_left_plus=255	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=62	max_min_right_minus=62	max_min_right_plus=4	max_pos_hash_score=540	max_right=62	max_right_minus=62	max_right_plus=4	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.914e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=CAGATTGTTGAGTGCGCTTTATTCA
JC	228	.	NC_000913	3423250	1	NC_000913	3423417	-1	0	alignment_overlap=18	coverage_minus=21	coverage_plus=18	flanking_left=300	flanking_right=300	frequency=4.360e-01	junction_possible_overlap_registers=276	key=NC_000913__3423250__1__NC_000913__3423435__-1__18____300__300__0__0	max_left=258	max_left_minus=257	max_left_plus=258	max_min_left=135	max_min_left_minus=135	max_min_left_plus=118	max_min_right=133	max_min_right_minus=113	max_min_right_plus=133	max_pos_hash_score=554	max_right=277	max_right_minus=277	max_right_plus=272	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.45	new_junction_read_count=42	polymorphism_frequency=4.360e-01	pos_hash_score=34	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=18	side_1_possible_overlap_registers=294	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=39
JC	229	.	NC_000913	3468779	-1	NC_000913	3469104	1	0	alignment_overlap=17	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.635e-02	junction_possible_overlap_registers=277	key=NC_000913__3468779__-1__NC_000913__3469087__1__17____300__300__0__0	max_left=189	max_left_minus=189	max_left_plus=189	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=81	max_min_right_minus=81	max_min_right_plus=81	max_pos_hash_score=556	max_right=81	max_right_minus=81	max_right_plus=81	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.635e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=17	side_1_possible_overlap_registers=294	side_1_read_count=109	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=119	side_2_redundant=0	total_non_overlap_reads=3
JC	230	.	NC_000913	3682260	-1	NC_000913	3682295	1	0	alignment_overlap=2	coverage_minus=46	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__3682260__-1__NC_000913__3682293__1__2____300__300__0__0	max_left=289	max_left_minus=275	max_left_plus=289	max_min_left=140	max_min_left_minus=140	max_min_left_plus=139	max_min_right=144	max_min_right_minus=144	max_min_right_plus=143	max_pos_hash_score=586	max_right=289	max_right_minus=287	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.98	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	231	.	NC_000913	3737141	-1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=75	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3737141__-1__NC_000913__4498181__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=295	max_min_left=145	max_min_left_minus=145	max_min_left_plus=136	max_min_right=147	max_min_right_minus=114	max_min_right_plus=147	max_pos_hash_score=590	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=127	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=124
JC	232	.	NC_000913	3931505	1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3931505__1__NC_000913__4499511__-1__0____300__300__0__1	max_left=295	max_left_minus=289	max_left_plus=295	max_min_left=141	max_min_left_minus=130	max_min_left_plus=141	max_min_right=149	max_min_right_minus=147	max_min_right_plus=149	max_pos_hash_score=590	max_right=287	max_right_minus=287	max_right_plus=279	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=106	polymorphism_frequency=9.720e-01	pos_hash_score=69	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=104
JC	233	.	NC_000913	3931509	-1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=46	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3931509__-1__NC_000913__4498181__1__0____300__300__0__1	max_left=299	max_left_minus=295	max_left_plus=299	max_min_left=148	max_min_left_minus=148	max_min_left_plus=128	max_min_right=147	max_min_right_minus=137	max_min_right_plus=147	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=292	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=1.03	new_junction_read_count=103	polymorphism_frequency=9.712e-01	pos_hash_score=57	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=102
JC	234	.	NC_000913	4055210	-1	NC_000913	4055586	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.463e-02	junction_possible_overlap_registers=285	key=NC_000913__4055210__-1__NC_000913__4055577__1__9____300__300__0__0	max_left=38	max_left_minus=38	max_left_plus=28	max_min_left=38	max_min_left_minus=38	max_min_left_plus=28	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=572	max_right=253	max_right_minus=253	max_right_plus=67	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.463e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=3
JC	235	.	NC_000913	4057547	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=16	flanking_left=300	flanking_right=300	frequency=2.083e-01	junction_possible_overlap_registers=294	key=NC_000913__4057547__1__NC_000913__4498181__1__0____300__300__0__1	max_left=295	max_left_minus=278	max_left_plus=295	max_min_left=147	max_min_left_minus=116	max_min_left_plus=147	max_min_right=143	max_min_right_minus=23	max_min_right_plus=143	max_pos_hash_score=590	max_right=292	max_right_minus=265	max_right_plus=292	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.25	new_junction_read_count=25	polymorphism_frequency=2.083e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23
JC	236	.	NC_000913	4057551	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=2.031e-01	junction_possible_overlap_registers=294	key=NC_000913__4057551__-1__NC_000913__4499511__-1__0____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=210	max_min_left=144	max_min_left_minus=144	max_min_left_plus=104	max_min_right=147	max_min_right_minus=147	max_min_right_plus=144	max_pos_hash_score=590	max_right=284	max_right_minus=284	max_right_plus=283	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.26	new_junction_read_count=26	polymorphism_frequency=2.031e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=26
JC	237	.	NC_000913	4123923	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=44	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__4123922__1__NC_000913__4498181__1__1____300__300__0__1	max_left=294	max_left_minus=270	max_left_plus=294	max_min_left=145	max_min_left_minus=145	max_min_left_plus=139	max_min_right=146	max_min_right_minus=146	max_min_right_plus=136	max_pos_hash_score=588	max_right=292	max_right_minus=278	max_right_plus=292	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.08	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=101
JC	238	.	NC_000913	4123927	-1	NC_000913	4499511	-1	0	alignment_overlap=1	coverage_minus=42	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____300__300__0__1	max_left=284	max_left_minus=275	max_left_plus=284	max_min_left=141	max_min_left_minus=141	max_min_left_plus=139	max_min_right=148	max_min_right_minus=144	max_min_right_plus=148	max_pos_hash_score=588	max_right=283	max_right_minus=266	max_right_plus=283	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.99	new_junction_read_count=98	polymorphism_frequency=9.897e-01	pos_hash_score=56	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=97
JC	239	.	NC_000913	4235952	-1	NC_000913	4236085	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=3.140e-02	junction_possible_overlap_registers=283	key=NC_000913__4235952__-1__NC_000913__4236074__1__11____300__300__0__0	max_left=141	max_left_minus=141	max_left_plus=0	max_min_left=114	max_min_left_minus=114	max_min_left_plus=0	max_min_right=140	max_min_right_minus=140	max_min_right_plus=0	max_pos_hash_score=568	max_right=184	max_right_minus=184	max_right_plus=0	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.140e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=3
JC	240	.	NC_000913	4502575	-1	NC_000913	4502912	1	0	alignment_overlap=14	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.095e-02	junction_possible_overlap_registers=280	key=NC_000913__4502575__-1__NC_000913__4502898__1__14____300__300__0__0	max_left=51	max_left_minus=51	max_left_plus=51	max_min_left=51	max_min_left_minus=51	max_min_left_plus=51	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=562	max_right=182	max_right_minus=182	max_right_plus=182	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=1.095e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=4.31	side_1_overlap=14	side_1_possible_overlap_registers=294	side_1_read_count=430	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=3.29	side_2_overlap=0	side_2_possible_overlap_registers=280	side_2_read_count=313	side_2_redundant=0	total_non_overlap_reads=4
JC	241	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=11	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.219e-01	junction_possible_overlap_registers=285	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=284	max_left_minus=284	max_left_plus=260	max_min_left=114	max_min_left_minus=105	max_min_left_plus=114	max_min_right=101	max_min_right_minus=101	max_min_right_plus=38	max_pos_hash_score=572	max_right=278	max_right_minus=278	max_right_plus=267	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.18	new_junction_read_count=17	polymorphism_frequency=1.219e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=133	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=116	side_2_redundant=0	total_non_overlap_reads=17
JC	242	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.288e-02	junction_possible_overlap_registers=285	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=270	max_left_minus=260	max_left_plus=270	max_min_left=127	max_min_left_minus=127	max_min_left_plus=73	max_min_right=31	max_min_right_minus=31	max_min_right_plus=21	max_pos_hash_score=572	max_right=218	max_right_minus=164	max_right_plus=218	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=5.288e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.39	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=139	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=116	side_2_redundant=0	total_non_overlap_reads=6
JC	243	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=2	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.252e-01	junction_possible_overlap_registers=205	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=172	max_left_minus=172	max_left_plus=159	max_min_left=100	max_min_left_minus=100	max_min_left_plus=65	max_min_right=95	max_min_right_minus=7	max_min_right_plus=95	max_pos_hash_score=412	max_right=185	max_right_minus=111	max_right_plus=185	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.11	new_junction_read_count=8	polymorphism_frequency=1.252e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=89	side_1_possible_overlap_registers=294	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=7
UN	244	.	NC_000913	15663	16445
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