#=GENOME_DIFF	1.0
#=CREATED	15:04:52 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8581_S16_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8581_S16_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8581_S16_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8581_S16_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8581_S16_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	351084737
#=CONVERTED-READS	1188535
#=INPUT-BASES	351163527
#=INPUT-READS	1188804
#=MAPPED-BASES	333212831
#=MAPPED-READS	1128784
SNP	1	92	NC_000913	246747	T
DEL	2	215,222	NC_000913	257908	776
SNP	3	93	NC_000913	284535	G
SNP	4	94	NC_000913	390136	G
SUB	5	96,97	NC_000913	480295	2	AA
SNP	6	98	NC_000913	690948	A
SNP	7	99	NC_000913	700038	A
SNP	8	100	NC_000913	756333	A
SUB	9	101,102	NC_000913	809217	2	AG
SNP	10	105	NC_000913	968837	A
SNP	11	106	NC_000913	1040126	T
SNP	12	107	NC_000913	1061935	A
SNP	13	108	NC_000913	1069743	T
SNP	14	109	NC_000913	1098620	A
SUB	15	110,111	NC_000913	1111727	2	TT
SNP	16	112	NC_000913	1169836	G
SNP	17	113	NC_000913	1189980	G
SNP	18	114	NC_000913	1196220	T
SNP	19	115	NC_000913	1196232	T
SNP	20	116	NC_000913	1196245	C
SNP	21	117	NC_000913	1196247	G
SNP	22	118	NC_000913	1196277	T
SNP	23	119	NC_000913	1196280	C
SNP	24	120	NC_000913	1196283	G
SNP	25	121	NC_000913	1196292	T
SNP	26	122	NC_000913	1196304	A
DEL	27	217,233	NC_000913	1299499	1199
SNP	28	127	NC_000913	1301992	T
SNP	29	128	NC_000913	1306736	G
SNP	30	129	NC_000913	1310770	G
SNP	31	131	NC_000913	1337394	G
SNP	32	133	NC_000913	1357202	T
SNP	33	134	NC_000913	1358859	C
SNP	34	138	NC_000913	1643679	T
SNP	35	139	NC_000913	1652331	C
SNP	36	140	NC_000913	1721136	T
SNP	37	141	NC_000913	1776715	T
SNP	38	144	NC_000913	1894839	C
SNP	39	146	NC_000913	1964254	C
SNP	40	147	NC_000913	2040433	A
DEL	41	148,149	NC_000913	2173363	2
SNP	42	150	NC_000913	2188087	C
SNP	43	152	NC_000913	2384808	T
SNP	44	153	NC_000913	2410419	A
SNP	45	154	NC_000913	2484827	T
SNP	46	155	NC_000913	2564496	T
MOB	47	240,241	NC_000913	2913392	IS2	-1	5
SUB	48	161,162	NC_000913	3088010	2	TT
SUB	49	163,164	NC_000913	3336411	2	AT
SNP	50	165	NC_000913	3388041	G
SNP	51	166	NC_000913	3436697	A
INS	52	167	NC_000913	3560455	G
SNP	53	169	NC_000913	3682515	T
SNP	54	170	NC_000913	3707947	A
DEL	55	220,245	NC_000913	3708467	168
SNP	56	172	NC_000913	3725176	G
SNP	57	174	NC_000913	3771979	T
INS	58	175	NC_000913	3815883	C
INS	59	247	NC_000913	3822651	CAGGAT	repeat_length=6	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CAGGAT
SNP	60	176	NC_000913	3823162	T
SNP	61	177	NC_000913	3869637	A
SNP	62	178	NC_000913	3878536	A
SNP	63	180	NC_000913	3993531	C
SNP	64	181	NC_000913	3996049	A
SNP	65	182	NC_000913	4011802	T
SNP	66	183	NC_000913	4084903	G
SNP	67	184	NC_000913	4092703	G
SNP	68	185	NC_000913	4113851	A
SNP	69	186	NC_000913	4143377	T
SNP	70	187	NC_000913	4161248	T
SNP	71	188	NC_000913	4164123	G
SNP	72	189	NC_000913	4193996	G
SNP	73	190	NC_000913	4196331	G
SNP	74	191	NC_000913	4215347	A
SNP	75	192	NC_000913	4223638	C
INS	76	194	NC_000913	4282332	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
SUB	77	195,196	NC_000913	4293781	2	AT
INS	78	198,199	NC_000913	4296381	GC
SNP	79	200	NC_000913	4324100	T
SNP	80	201	NC_000913	4325644	T
SNP	81	203	NC_000913	4392997	A
SNP	82	204	NC_000913	4393552	A
SNP	83	205	NC_000913	4396373	T
SNP	84	206	NC_000913	4396772	C
SNP	85	207	NC_000913	4425688	A
SNP	86	208	NC_000913	4425696	A
SNP	87	209	NC_000913	4510238	G
SNP	88	210	NC_000913	4532409	G
SNP	89	212	NC_000913	4546601	T
SNP	90	213	NC_000913	4636925	C
SNP	91	214	NC_000913	4638240	A
RA	92	.	NC_000913	246747	0	G	T	consensus_score=362.9	frequency=1	major_base=T	major_cov=55/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/43
RA	93	.	NC_000913	284535	0	T	G	bias_e_value=3715310	bias_p_value=0.800429	consensus_score=141.1	fisher_strand_p_value=0.439024	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=23/17	major_frequency=9.756e-01	minor_base=A	minor_cov=0/1	new_cov=23/17	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=23/19
RA	94	.	NC_000913	390136	0	A	G	consensus_score=470.2	frequency=1	major_base=G	major_cov=40/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/82
RA	95	.	NC_000913	442471	0	C	A	bias_e_value=1.57213	bias_p_value=3.38701e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.8	fisher_strand_p_value=1.79837e-08	frequency=3.258e-01	ks_quality_p_value=1	major_base=C	major_cov=26/34	major_frequency=6.742e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.258e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=26/34	total_cov=55/34
RA	96	.	NC_000913	480295	0	G	A	consensus_score=352.5	frequency=1	major_base=A	major_cov=35/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/59
RA	97	.	NC_000913	480296	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=348.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/58	major_frequency=9.894e-01	minor_base=G	minor_cov=0/1	new_cov=35/58	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=35/59
RA	98	.	NC_000913	690948	0	G	A	consensus_score=250.1	frequency=1	major_base=A	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	99	.	NC_000913	700038	0	G	A	consensus_score=196.0	frequency=1	major_base=A	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	100	.	NC_000913	756333	0	C	A	consensus_score=179.7	frequency=1	major_base=A	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	101	.	NC_000913	809217	0	C	A	bias_e_value=3317270	bias_p_value=0.714674	consensus_score=174.7	fisher_strand_p_value=0.350877	frequency=1	ks_quality_p_value=0.990025	major_base=A	major_cov=37/19	major_frequency=9.825e-01	minor_base=C	minor_cov=0/1	new_cov=37/19	polymorphism_frequency=9.825e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=37/20
RA	102	.	NC_000913	809218	0	A	G	bias_e_value=3266040	bias_p_value=0.703638	consensus_score=199.9	fisher_strand_p_value=0.350877	frequency=1	ks_quality_p_value=0.960693	major_base=G	major_cov=37/19	major_frequency=9.825e-01	minor_base=A	minor_cov=0/1	new_cov=37/19	polymorphism_frequency=9.825e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=37/20
RA	103	.	NC_000913	834674	0	C	A	bias_e_value=7.71198	bias_p_value=1.66147e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.5	fisher_strand_p_value=9.688e-08	frequency=2.987e-01	ks_quality_p_value=1	major_base=C	major_cov=21/33	major_frequency=7.013e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.987e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=21/33	total_cov=44/33
RA	104	.	NC_000913	847955	0	G	A	bias_e_value=0.104914	bias_p_value=2.26027e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.0	fisher_strand_p_value=1.04248e-09	frequency=2.525e-01	ks_quality_p_value=1	major_base=G	major_cov=49/25	major_frequency=7.475e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.525e-01	polymorphism_score=24.4	prediction=polymorphism	ref_cov=49/25	total_cov=49/51
RA	105	.	NC_000913	968837	0	G	A	consensus_score=150.5	frequency=1	major_base=A	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	106	.	NC_000913	1040126	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=288.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/42	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=42/42	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=42/43
RA	107	.	NC_000913	1061935	0	G	A	bias_e_value=3955560	bias_p_value=0.852188	consensus_score=193.8	fisher_strand_p_value=0.508197	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/25	major_frequency=9.672e-01	minor_base=C	minor_cov=2/0	new_cov=34/25	polymorphism_frequency=9.672e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/0	total_cov=36/25
RA	108	.	NC_000913	1069743	0	C	T	consensus_score=236.1	frequency=1	major_base=T	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	109	.	NC_000913	1098620	0	T	A	consensus_score=246.7	frequency=1	major_base=A	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	110	.	NC_000913	1111727	0	C	T	consensus_score=248.7	frequency=1	major_base=T	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	111	.	NC_000913	1111728	0	C	T	consensus_score=250.6	frequency=1	major_base=T	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	112	.	NC_000913	1169836	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=207.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=25/29	major_frequency=9.818e-01	minor_base=A	minor_cov=0/1	new_cov=25/29	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=26/30
RA	113	.	NC_000913	1189980	0	A	G	consensus_score=251.9	frequency=1	major_base=G	major_cov=27/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/40
RA	114	.	NC_000913	1196220	0	C	T	consensus_score=121.9	frequency=1	major_base=T	major_cov=21/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/18
RA	115	.	NC_000913	1196232	0	C	T	consensus_score=111.0	frequency=1	major_base=T	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	116	.	NC_000913	1196245	0	T	C	consensus_score=106.1	frequency=1	major_base=C	major_cov=18/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	117	.	NC_000913	1196247	0	A	G	consensus_score=106.8	frequency=1	major_base=G	major_cov=18/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	118	.	NC_000913	1196277	0	C	T	consensus_score=72.9	frequency=1	major_base=T	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	119	.	NC_000913	1196280	0	G	C	consensus_score=76.0	frequency=1	major_base=C	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	120	.	NC_000913	1196283	0	A	G	consensus_score=76.9	frequency=1	major_base=G	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	121	.	NC_000913	1196292	0	C	T	consensus_score=68.3	frequency=1	major_base=T	major_cov=16/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/10
RA	122	.	NC_000913	1196304	0	G	A	consensus_score=49.2	frequency=1	major_base=A	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	123	.	NC_000913	1196316	0	T	A	consensus_score=33.5	deleted=1	frequency=1	major_base=A	major_cov=10/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/6
RA	124	.	NC_000913	1196325	0	A	G	consensus_score=23.1	deleted=1	frequency=1	major_base=G	major_cov=7/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	125	.	NC_000913	1196352	0	C	A	consensus_score=19.8	deleted=1	frequency=1	major_base=A	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	126	.	NC_000913	1286846	0	G	A	bias_e_value=2896500	bias_p_value=0.624024	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.9	fisher_strand_p_value=0.270385	frequency=2.045e-01	ks_quality_p_value=1	major_base=G	major_cov=19/16	major_frequency=7.955e-01	minor_base=A	minor_cov=7/2	new_cov=7/2	polymorphism_frequency=2.045e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=19/16	total_cov=26/18
RA	127	.	NC_000913	1301992	0	A	T	consensus_score=289.6	frequency=1	major_base=T	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	128	.	NC_000913	1306736	0	T	G	bias_e_value=3344370	bias_p_value=0.720513	consensus_score=242.4	fisher_strand_p_value=0.352941	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/23	major_frequency=9.853e-01	minor_base=A	minor_cov=0/1	new_cov=44/23	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	129	.	NC_000913	1310770	0	A	G	consensus_score=374.2	frequency=1	major_base=G	major_cov=64/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/35
RA	130	.	NC_000913	1334966	0	A	C	bias_e_value=8.90002	bias_p_value=1.91742e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.7	fisher_strand_p_value=1.12806e-07	frequency=2.605e-01	ks_quality_p_value=1	major_base=A	major_cov=46/42	major_frequency=7.395e-01	minor_base=C	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.605e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=46/42	total_cov=77/42
RA	131	.	NC_000913	1337394	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=218.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=34/27	major_frequency=9.839e-01	minor_base=A	minor_cov=1/0	new_cov=34/27	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/28
RA	132	.	NC_000913	1351463	0	C	A	bias_e_value=822.483	bias_p_value=0.000177196	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.4	fisher_strand_p_value=1.46029e-05	frequency=3.333e-01	ks_quality_p_value=1	major_base=C	major_cov=22/22	major_frequency=6.667e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.333e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=22/22	total_cov=44/22
RA	133	.	NC_000913	1357202	0	C	T	bias_e_value=3814300	bias_p_value=0.821754	consensus_score=318.3	fisher_strand_p_value=0.465909	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/40	major_frequency=9.886e-01	minor_base=G	minor_cov=0/1	new_cov=47/40	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	134	.	NC_000913	1358859	0	T	C	bias_e_value=3741510	bias_p_value=0.806073	consensus_score=274.4	fisher_strand_p_value=0.445946	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/41	major_frequency=9.865e-01	minor_base=A	minor_cov=1/0	new_cov=32/41	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	135	.	NC_000913	1466604	0	G	A	bias_e_value=3929670	bias_p_value=0.846611	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.6	fisher_strand_p_value=0.500054	frequency=2.444e-01	ks_quality_p_value=1	major_base=G	major_cov=14/20	major_frequency=7.556e-01	minor_base=A	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.444e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=14/20	total_cov=20/25
RA	136	.	NC_000913	1502770	0	T	C	bias_e_value=30.2969	bias_p_value=6.52718e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.1	fisher_strand_p_value=4.15937e-07	frequency=2.375e-01	ks_quality_p_value=1	major_base=T	major_cov=38/23	major_frequency=7.625e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.375e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=38/23	total_cov=38/42
RA	137	.	NC_000913	1502772	0	G	A	bias_e_value=74.538	bias_p_value=1.60585e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.3	fisher_strand_p_value=1.09026e-06	frequency=2.250e-01	ks_quality_p_value=1	major_base=G	major_cov=38/24	major_frequency=7.750e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.250e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=38/24	total_cov=38/42
RA	138	.	NC_000913	1643679	0	A	T	consensus_score=230.9	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	139	.	NC_000913	1652331	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=287.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=42/33	major_frequency=9.868e-01	minor_base=T	minor_cov=1/0	new_cov=42/33	polymorphism_frequency=9.868e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=43/33
RA	140	.	NC_000913	1721136	0	C	T	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=291.6	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/51	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=33/51	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/51
RA	141	.	NC_000913	1776715	0	A	T	bias_e_value=3911280	bias_p_value=0.842648	consensus_score=301.9	fisher_strand_p_value=0.494382	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/43	major_frequency=9.888e-01	minor_base=G	minor_cov=0/1	new_cov=45/43	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	142	.	NC_000913	1779583	0	G	T	bias_e_value=0.050266	bias_p_value=1.08293e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.1	fisher_strand_p_value=4.82324e-10	frequency=3.535e-01	ks_quality_p_value=1	major_base=G	major_cov=37/27	major_frequency=6.465e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=3.535e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=37/27	total_cov=37/62
RA	143	.	NC_000913	1812509	0	G	T	bias_e_value=0.0696485	bias_p_value=1.50051e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.8	fisher_strand_p_value=6.78629e-10	frequency=2.617e-01	ks_quality_p_value=1	major_base=G	major_cov=54/25	major_frequency=7.383e-01	minor_base=T	minor_cov=1/27	new_cov=1/27	polymorphism_frequency=2.617e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=54/25	total_cov=55/52
RA	144	.	NC_000913	1894839	0	T	C	consensus_score=231.6	frequency=1	major_base=C	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	145	.	NC_000913	1901209	0	C	T	bias_e_value=97009.4	bias_p_value=0.0208998	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.7	fisher_strand_p_value=0.0030815	frequency=2.391e-01	ks_quality_p_value=1	major_base=C	major_cov=18/17	major_frequency=7.609e-01	minor_base=T	minor_cov=0/11	new_cov=0/11	polymorphism_frequency=2.391e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=18/17	total_cov=18/28
RA	146	.	NC_000913	1964254	0	A	C	bias_e_value=3540080	bias_p_value=0.762677	consensus_score=168.5	fisher_strand_p_value=0.395833	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/18	major_frequency=9.792e-01	minor_base=T	minor_cov=0/1	new_cov=29/18	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	147	.	NC_000913	2040433	0	C	A	bias_e_value=3974520	bias_p_value=0.856274	consensus_score=163.4	fisher_strand_p_value=0.514286	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/22	major_frequency=9.643e-01	minor_base=C	minor_cov=2/0	new_cov=32/22	polymorphism_frequency=9.643e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=2/0	total_cov=34/22
RA	148	.	NC_000913	2173363	0	C	.	consensus_score=289.3	frequency=1	major_base=.	major_cov=23/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/37
RA	149	.	NC_000913	2173364	0	C	.	consensus_score=289.3	frequency=1	major_base=.	major_cov=23/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/37
RA	150	.	NC_000913	2188087	0	T	C	consensus_score=406.8	frequency=1	major_base=C	major_cov=52/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/54
RA	151	.	NC_000913	2326713	0	C	A	bias_e_value=191.988	bias_p_value=4.1362e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.3	fisher_strand_p_value=3.01662e-06	frequency=2.712e-01	ks_quality_p_value=1	major_base=C	major_cov=15/28	major_frequency=7.288e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.712e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=15/28	total_cov=31/28
RA	152	.	NC_000913	2384808	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=239.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/34	major_frequency=9.730e-01	minor_base=C	minor_cov=1/1	new_cov=38/34	polymorphism_frequency=9.730e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/1	total_cov=39/35
RA	153	.	NC_000913	2410419	0	G	A	consensus_score=256.6	frequency=1	major_base=A	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	154	.	NC_000913	2484827	0	C	T	consensus_score=278.5	frequency=1	major_base=T	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	155	.	NC_000913	2564496	0	G	T	consensus_score=238.0	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	156	.	NC_000913	2818038	0	T	C	bias_e_value=3876430	bias_p_value=0.83514	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.0	fisher_strand_p_value=0.483884	frequency=2.174e-01	ks_quality_p_value=1	major_base=T	major_cov=16/20	major_frequency=7.826e-01	minor_base=C	minor_cov=6/4	new_cov=6/4	polymorphism_frequency=2.174e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=16/20	total_cov=22/25
RA	157	.	NC_000913	2818324	0	G	A	bias_e_value=3824960	bias_p_value=0.824051	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.4	fisher_strand_p_value=0.46893	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=18/18	major_frequency=8.000e-01	minor_base=A	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.000e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=18/18	total_cov=21/25
RA	158	.	NC_000913	3032307	0	C	T	bias_e_value=3.78266	bias_p_value=8.14938e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.0	fisher_strand_p_value=4.55139e-08	frequency=2.346e-01	ks_quality_p_value=1	major_base=C	major_cov=20/42	major_frequency=7.654e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.346e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=20/42	total_cov=39/42
RA	159	.	NC_000913	3054886	0	G	T	bias_e_value=1000.89	bias_p_value=0.000215633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.5	fisher_strand_p_value=1.80897e-05	frequency=2.436e-01	ks_quality_p_value=1	major_base=G	major_cov=28/31	major_frequency=7.564e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.436e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=28/31	total_cov=47/31
RA	160	.	NC_000913	3054894	0	G	T	bias_e_value=15904.4	bias_p_value=0.00342646	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.2	fisher_strand_p_value=0.000386843	frequency=2.817e-01	ks_quality_p_value=1	major_base=G	major_cov=22/29	major_frequency=7.183e-01	minor_base=T	minor_cov=18/2	new_cov=18/2	polymorphism_frequency=2.817e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=22/29	total_cov=40/31
RA	161	.	NC_000913	3088010	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=342.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/50	major_frequency=9.900e-01	minor_base=G	minor_cov=0/1	new_cov=49/50	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	162	.	NC_000913	3088011	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=343.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/50	major_frequency=9.900e-01	minor_base=G	minor_cov=0/1	new_cov=49/50	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	163	.	NC_000913	3336411	0	G	A	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=318.0	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/35	major_frequency=9.889e-01	minor_base=G	minor_cov=0/1	new_cov=54/35	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/37
RA	164	.	NC_000913	3336412	0	A	T	bias_e_value=3585690	bias_p_value=0.772504	consensus_score=315.6	fisher_strand_p_value=0.406593	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/36	major_frequency=9.890e-01	minor_base=A	minor_cov=0/1	new_cov=54/36	polymorphism_frequency=9.890e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=54/37
RA	165	.	NC_000913	3388041	0	T	G	consensus_score=216.5	frequency=1	major_base=G	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	166	.	NC_000913	3436697	0	G	A	consensus_score=198.3	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	167	.	NC_000913	3560455	1	.	G	bias_e_value=4641620	bias_p_value=0.999993	consensus_score=262.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996385	major_base=G	major_cov=27/43	major_frequency=9.859e-01	minor_base=.	minor_cov=0/1	new_cov=27/43	polymorphism_frequency=9.859e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=27/44
RA	168	.	NC_000913	3623537	0	G	A	bias_e_value=14.401	bias_p_value=3.10256e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.2	fisher_strand_p_value=1.88196e-07	frequency=2.475e-01	ks_quality_p_value=1	major_base=G	major_cov=41/35	major_frequency=7.525e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.475e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=41/35	total_cov=41/61
RA	169	.	NC_000913	3682515	0	C	T	consensus_score=276.1	frequency=1	major_base=T	major_cov=46/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/30
RA	170	.	NC_000913	3707947	0	C	A	consensus_score=361.1	frequency=1	major_base=A	major_cov=77/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/29
RA	171	.	NC_000913	3722230	0	G	T	bias_e_value=0.00962877	bias_p_value=2.07443e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.3	fisher_strand_p_value=8.57943e-11	frequency=2.586e-01	ks_quality_p_value=1	major_base=G	major_cov=55/31	major_frequency=7.414e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.586e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=55/31	total_cov=55/61
RA	172	.	NC_000913	3725176	0	T	G	consensus_score=243.6	frequency=1	major_base=G	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	173	.	NC_000913	3741871	0	G	T	bias_e_value=52.3976	bias_p_value=1.12886e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.4	fisher_strand_p_value=7.47247e-07	frequency=2.473e-01	ks_quality_p_value=1	major_base=G	major_cov=38/32	major_frequency=7.527e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.473e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=38/32	total_cov=38/55
RA	174	.	NC_000913	3771979	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=335.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/55	major_frequency=9.899e-01	minor_base=G	minor_cov=0/1	new_cov=43/55	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=43/56
RA	175	.	NC_000913	3815883	1	.	C	bias_e_value=3221690	bias_p_value=0.694082	consensus_score=244.1	fisher_strand_p_value=0.329024	frequency=1	ks_quality_p_value=0.998107	major_base=C	major_cov=28/35	major_frequency=9.403e-01	minor_base=.	minor_cov=3/1	new_cov=28/35	polymorphism_frequency=9.403e-01	polymorphism_score=10.1	prediction=consensus	ref_cov=3/1	total_cov=31/36
RA	176	.	NC_000913	3823162	0	C	T	consensus_score=254.9	frequency=1	major_base=T	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	177	.	NC_000913	3869637	0	C	A	consensus_score=160.6	frequency=1	major_base=A	major_cov=18/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/30
RA	178	.	NC_000913	3878536	0	G	A	consensus_score=241.4	frequency=1	major_base=A	major_cov=18/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/45
RA	179	.	NC_000913	3911533	0	C	A	bias_e_value=0.00340022	bias_p_value=7.32545e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.2	fisher_strand_p_value=2.89958e-11	frequency=3.981e-01	ks_quality_p_value=1	major_base=C	major_cov=28/37	major_frequency=6.019e-01	minor_base=A	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=3.981e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=28/37	total_cov=71/37
RA	180	.	NC_000913	3993531	0	T	C	consensus_score=253.6	frequency=1	major_base=C	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	181	.	NC_000913	3996049	0	T	A	bias_e_value=3684610	bias_p_value=0.793815	consensus_score=236.2	fisher_strand_p_value=0.432836	frequency=1	ks_quality_p_value=0.995938	major_base=A	major_cov=28/38	major_frequency=9.851e-01	minor_base=G	minor_cov=1/0	new_cov=28/38	polymorphism_frequency=9.851e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	182	.	NC_000913	4011802	0	C	T	consensus_score=197.2	frequency=1	major_base=T	major_cov=27/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/33
RA	183	.	NC_000913	4084903	0	T	G	bias_e_value=2789310	bias_p_value=0.600932	consensus_score=264.9	fisher_strand_p_value=0.253158	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=33/40	major_frequency=9.605e-01	minor_base=T	minor_cov=0/3	new_cov=33/40	polymorphism_frequency=9.605e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=33/43
RA	184	.	NC_000913	4092703	0	A	G	consensus_score=258.0	frequency=1	major_base=G	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	185	.	NC_000913	4113851	0	G	A	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=233.5	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/27	major_frequency=9.857e-01	minor_base=G	minor_cov=0/1	new_cov=42/27	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=42/28
RA	186	.	NC_000913	4143377	0	C	T	consensus_score=194.6	frequency=1	major_base=T	major_cov=32/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/22
RA	187	.	NC_000913	4161248	0	G	T	consensus_score=230.6	frequency=1	major_base=T	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	188	.	NC_000913	4164123	0	C	G	bias_e_value=3830780	bias_p_value=0.825304	consensus_score=244.3	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=36/31	major_frequency=9.853e-01	minor_base=T	minor_cov=0/1	new_cov=36/31	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	189	.	NC_000913	4193996	0	T	G	consensus_score=239.1	frequency=1	major_base=G	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	190	.	NC_000913	4196331	0	C	G	bias_e_value=3590590	bias_p_value=0.773558	consensus_score=377.7	fisher_strand_p_value=0.407767	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=61/41	major_frequency=9.903e-01	minor_base=T	minor_cov=0/1	new_cov=61/41	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/42
RA	191	.	NC_000913	4215347	0	T	A	consensus_score=334.2	frequency=1	major_base=A	major_cov=53/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/44
RA	192	.	NC_000913	4223638	0	T	C	consensus_score=357.0	frequency=1	major_base=C	major_cov=47/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/49
RA	193	.	NC_000913	4261040	0	C	A	bias_e_value=2.09655e-06	bias_p_value=4.51681e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.5	fisher_strand_p_value=1.37206e-14	frequency=2.833e-01	ks_quality_p_value=1	major_base=C	major_cov=24/62	major_frequency=7.167e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.833e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=24/62	total_cov=58/62
RA	194	.	NC_000913	4282332	1	.	A	bias_e_value=3873940	bias_p_value=0.834604	consensus_score=315.4	fisher_strand_p_value=0.483146	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/42	major_frequency=9.888e-01	minor_base=G	minor_cov=0/1	new_cov=46/42	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	195	.	NC_000913	4293781	0	G	A	bias_e_value=3330100	bias_p_value=0.717438	consensus_score=281.8	fisher_strand_p_value=0.35	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/52	major_frequency=9.875e-01	minor_base=C	minor_cov=1/0	new_cov=27/52	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/52
RA	196	.	NC_000913	4293782	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=264.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/51	major_frequency=9.875e-01	minor_base=G	minor_cov=0/1	new_cov=28/51	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/52
RA	197	.	NC_000913	4296268	0	T	C	bias_e_value=4315570	bias_p_value=0.929748	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.5	fisher_strand_p_value=0.649395	frequency=2.500e-01	ks_quality_p_value=1	major_base=T	major_cov=9/9	major_frequency=7.500e-01	minor_base=C	minor_cov=4/2	new_cov=4/2	polymorphism_frequency=2.500e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=9/9	total_cov=13/11
RA	198	.	NC_000913	4296380	1	.	C	bias_e_value=2493400	bias_p_value=0.53718	consensus_score=173.5	fisher_strand_p_value=0.209644	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/23	major_frequency=9.630e-01	minor_base=T	minor_cov=0/2	new_cov=29/23	polymorphism_frequency=9.630e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	199	.	NC_000913	4296380	2	.	G	consensus_score=194.3	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	200	.	NC_000913	4324100	0	C	T	consensus_score=297.8	frequency=1	major_base=T	major_cov=51/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/35
RA	201	.	NC_000913	4325644	0	C	T	consensus_score=227.2	frequency=1	major_base=T	major_cov=26/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/45
RA	202	.	NC_000913	4360965	0	C	A	bias_e_value=8.52974e-08	bias_p_value=1.83765e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.7	fisher_strand_p_value=5.07397e-16	frequency=3.243e-01	ks_quality_p_value=1	major_base=C	major_cov=18/57	major_frequency=6.757e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.243e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=18/57	total_cov=54/57
RA	203	.	NC_000913	4392997	0	G	A	consensus_score=387.4	frequency=1	major_base=A	major_cov=32/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/73
RA	204	.	NC_000913	4393552	0	G	A	consensus_score=217.8	frequency=1	major_base=A	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	205	.	NC_000913	4396373	0	C	T	consensus_score=208.8	frequency=1	major_base=T	major_cov=30/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/28
RA	206	.	NC_000913	4396772	0	T	C	consensus_score=161.4	frequency=1	major_base=C	major_cov=18/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/27
RA	207	.	NC_000913	4425688	0	C	A	consensus_score=194.6	frequency=1	major_base=A	major_cov=25/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/36
RA	208	.	NC_000913	4425696	0	C	A	consensus_score=194.9	frequency=1	major_base=A	major_cov=25/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/36
RA	209	.	NC_000913	4510238	0	T	G	bias_e_value=18571.9	bias_p_value=0.00400114	consensus_score=271.9	fisher_strand_p_value=0.000460829	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/30	major_frequency=8.953e-01	minor_base=T	minor_cov=0/9	new_cov=47/30	polymorphism_frequency=8.953e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/9	total_cov=47/39
RA	210	.	NC_000913	4532409	0	T	G	consensus_score=228.7	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	211	.	NC_000913	4540411	0	C	A	bias_e_value=0.261246	bias_p_value=5.62829e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.0	fisher_strand_p_value=2.71581e-09	frequency=3.136e-01	ks_quality_p_value=1	major_base=C	major_cov=40/41	major_frequency=6.864e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.136e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=40/41	total_cov=77/41
RA	212	.	NC_000913	4546601	0	C	T	bias_e_value=3843440	bias_p_value=0.828033	consensus_score=342.4	fisher_strand_p_value=0.474227	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/45	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=51/45	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	213	.	NC_000913	4636925	0	G	C	consensus_score=262.5	frequency=1	major_base=C	major_cov=39/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/31
RA	214	.	NC_000913	4638240	0	G	A	consensus_score=251.2	frequency=1	major_base=A	major_cov=43/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
MC	215	.	NC_000913	257908	258683	0	0	left_inside_cov=0	left_outside_cov=109	right_inside_cov=2	right_outside_cov=111
MC	216	.	NC_000913	1196309	1211459	0	0	left_inside_cov=20	left_outside_cov=21	right_inside_cov=19	right_outside_cov=21
MC	217	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=102	right_inside_cov=2	right_outside_cov=107
MC	218	.	NC_000913	1978495	1979270	0	766	left_inside_cov=0	left_outside_cov=80	right_inside_cov=0	right_outside_cov=108
MC	219	.	NC_000913	3423885	3424447	348	208	left_inside_cov=20	left_outside_cov=21	right_inside_cov=19	right_outside_cov=21
MC	220	.	NC_000913	3708467	3708634	0	0	left_inside_cov=0	left_outside_cov=49	right_inside_cov=20	right_outside_cov=69
JC	221	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=298	max_left_minus=298	max_left_plus=228	max_min_left=149	max_min_left_minus=149	max_min_left_plus=135	max_min_right=149	max_min_right_minus=149	max_min_right_plus=144	max_pos_hash_score=588	max_right=284	max_right_minus=278	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.40	new_junction_read_count=101	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97
JC	222	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=46	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=284	max_min_left=143	max_min_left_minus=86	max_min_left_plus=143	max_min_right=145	max_min_right_minus=131	max_min_right_plus=145	max_pos_hash_score=572	max_right=283	max_right_minus=283	max_right_plus=259	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.56	new_junction_read_count=109	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=108
JC	223	.	NC_000913	627525	-1	NC_000913	627887	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.155e-02	junction_possible_overlap_registers=285	key=NC_000913__627525__-1__NC_000913__627878__1__9____300__300__0__0	max_left=251	max_left_minus=251	max_left_plus=251	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=97	max_min_right_minus=97	max_min_right_plus=97	max_pos_hash_score=570	max_right=97	max_right_minus=97	max_right_plus=97	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.07	new_junction_read_count=5	polymorphism_frequency=6.155e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=5
JC	224	.	NC_000913	628867	-1	NC_000913	629478	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.102e-02	junction_possible_overlap_registers=285	key=NC_000913__628867__-1__NC_000913__629469__1__9____300__300__0__0	max_left=47	max_left_minus=47	max_left_plus=47	max_min_left=47	max_min_left_minus=47	max_min_left_plus=47	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_pos_hash_score=570	max_right=99	max_right_minus=99	max_right_plus=99	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=5.102e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=4
JC	225	.	NC_000913	696505	-1	NC_000913	696832	1	0	alignment_overlap=30	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.146e-02	junction_possible_overlap_registers=264	key=NC_000913__696505__-1__NC_000913__696802__1__30____300__300__0__0	max_left=201	max_left_minus=199	max_left_plus=201	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=528	max_right=68	max_right_minus=68	max_right_plus=68	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=3	polymorphism_frequency=4.146e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.26	side_1_overlap=30	side_1_possible_overlap_registers=294	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=264	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=3
JC	226	.	NC_000913	732239	-1	NC_000913	3622029	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.551e-01	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0	max_left=139	max_left_minus=139	max_left_plus=114	max_min_left=139	max_min_left_minus=139	max_min_left_plus=114	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=564	max_right=270	max_right_minus=149	max_right_plus=270	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=1.551e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.44	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=3
JC	227	.	NC_000913	732239	-1	NC_000913	3765020	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.512e-01	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0	max_left=139	max_left_minus=139	max_left_plus=114	max_min_left=139	max_min_left_minus=139	max_min_left_plus=114	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=564	max_right=270	max_right_minus=149	max_right_plus=270	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=1.512e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.44	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=3
JC	228	.	NC_000913	780689	-1	NC_000913	781772	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.595e-02	junction_possible_overlap_registers=293	key=NC_000913__780689__-1__NC_000913__781772__1__-1__T__300__300__0__0	max_left=267	max_left_minus=0	max_left_plus=267	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=31	max_min_right_minus=0	max_min_right_plus=31	max_pos_hash_score=586	max_right=179	max_right_minus=0	max_right_plus=179	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.595e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=T
JC	229	.	NC_000913	781222	-1	NC_000913	781809	1	0	alignment_overlap=18	coverage_minus=4	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=8.875e-02	junction_possible_overlap_registers=276	key=NC_000913__781222__-1__NC_000913__781791__1__18____300__300__0__0	max_left=170	max_left_minus=170	max_left_plus=68	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=53	max_min_right_minus=53	max_min_right_plus=53	max_pos_hash_score=552	max_right=53	max_right_minus=53	max_right_plus=53	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.09	new_junction_read_count=6	polymorphism_frequency=8.875e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=18	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=5
JC	230	.	NC_000913	781322	-1	NC_000913	781811	1	0	alignment_overlap=39	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.038e-01	junction_possible_overlap_registers=255	key=NC_000913__781322__-1__NC_000913__781772__1__39____300__300__0__0	max_left=159	max_left_minus=159	max_left_plus=123	max_min_left=28	max_min_left_minus=28	max_min_left_plus=13	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=510	max_right=142	max_right_minus=142	max_right_plus=140	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.10	new_junction_read_count=6	polymorphism_frequency=1.038e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=39	side_1_possible_overlap_registers=294	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=255	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=6
JC	231	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.953e-01	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=270	max_left_minus=270	max_left_plus=243	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=36	max_min_right_minus=21	max_min_right_plus=36	max_pos_hash_score=548	max_right=276	max_right_minus=21	max_right_plus=276	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.10	new_junction_read_count=7	polymorphism_frequency=1.953e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.47	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.39	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=7
JC	232	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.979e-01	junction_possible_overlap_registers=274	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=237	max_left_minus=237	max_left_plus=135	max_min_left=135	max_min_left_minus=0	max_min_left_plus=135	max_min_right=106	max_min_right_minus=106	max_min_right_plus=0	max_pos_hash_score=548	max_right=276	max_right_minus=106	max_right_plus=276	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.10	new_junction_read_count=7	polymorphism_frequency=1.979e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.46	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.39	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=7
JC	233	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=52	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=290	max_left_minus=290	max_left_plus=263	max_min_left=141	max_min_left_minus=139	max_min_left_plus=141	max_min_right=140	max_min_right_minus=138	max_min_right_plus=140	max_pos_hash_score=580	max_right=295	max_right_minus=285	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.44	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=100
JC	234	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=32	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=294	max_left_minus=273	max_left_plus=294	max_min_left=142	max_min_left_minus=132	max_min_left_plus=142	max_min_right=148	max_min_right_minus=148	max_min_right_plus=147	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=78
JC	235	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=48	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=294	max_left_minus=294	max_left_plus=294	max_min_left=135	max_min_left_minus=125	max_min_left_plus=135	max_min_right=150	max_min_right_minus=145	max_min_right_plus=150	max_pos_hash_score=588	max_right=292	max_right_minus=291	max_right_plus=292	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.51	new_junction_read_count=109	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=105
JC	236	.	NC_000913	2126541	-1	NC_000913	2127010	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=7.619e-02	junction_possible_overlap_registers=282	key=NC_000913__2126541__-1__NC_000913__2126998__1__12____300__300__0__0	max_left=89	max_left_minus=89	max_left_plus=42	max_min_left=89	max_min_left_minus=89	max_min_left_plus=42	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=564	max_right=135	max_right_minus=135	max_right_plus=135	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=7.619e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=49	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=50	side_2_redundant=0	total_non_overlap_reads=3
JC	237	.	NC_000913	2357690	-1	NC_000913	2357874	1	0	alignment_overlap=25	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.900e-02	junction_possible_overlap_registers=269	key=NC_000913__2357690__-1__NC_000913__2357849__1__25____300__300__0__0	max_left=250	max_left_minus=250	max_left_plus=226	max_min_left=140	max_min_left_minus=117	max_min_left_plus=140	max_min_right=54	max_min_right_minus=54	max_min_right_plus=54	max_pos_hash_score=538	max_right=156	max_right_minus=156	max_right_plus=146	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.09	new_junction_read_count=6	polymorphism_frequency=6.900e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.32	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=6
JC	238	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.261e-01	junction_possible_overlap_registers=269	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=212	max_left_minus=212	max_left_plus=124	max_min_left=124	max_min_left_minus=82	max_min_left_plus=124	max_min_right=101	max_min_right_minus=101	max_min_right_plus=101	max_pos_hash_score=538	max_right=270	max_right_minus=270	max_right_plus=209	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.14	new_junction_read_count=9	polymorphism_frequency=1.261e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=9
JC	239	.	NC_000913	2818275	-1	NC_000913	2818551	1	0	alignment_overlap=79	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.477e-01	junction_possible_overlap_registers=215	key=NC_000913__2818275__-1__NC_000913__2818472__1__79____300__300__0__0	max_left=116	max_left_minus=116	max_left_plus=12	max_min_left=87	max_min_left_minus=87	max_min_left_plus=12	max_min_right=103	max_min_right_minus=103	max_min_right_plus=0	max_pos_hash_score=430	max_right=218	max_right_minus=133	max_right_plus=218	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.11	new_junction_read_count=6	polymorphism_frequency=1.477e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=79	side_1_possible_overlap_registers=294	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=6
JC	240	.	NC_000913	2913392	1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=35	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1	max_left=295	max_left_minus=292	max_left_plus=295	max_min_left=146	max_min_left_minus=144	max_min_left_plus=146	max_min_right=144	max_min_right_minus=144	max_min_right_plus=137	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=293	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.24	new_junction_read_count=89	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=78
JC	241	.	NC_000913	2913396	-1	NC_000913	2996361	1	0	alignment_overlap=0	coverage_minus=28	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=295	max_min_left=146	max_min_left_minus=146	max_min_left_plus=130	max_min_right=139	max_min_right_minus=82	max_min_right_plus=139	max_pos_hash_score=588	max_right=284	max_right_minus=284	max_right_plus=258	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=70	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=67
JC	242	.	NC_000913	3269899	-1	NC_000913	3270239	1	0	alignment_overlap=18	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.521e-02	junction_possible_overlap_registers=276	key=NC_000913__3269899__-1__NC_000913__3270221__1__18____300__300__0__0	max_left=133	max_left_minus=133	max_left_plus=133	max_min_left=88	max_min_left_minus=88	max_min_left_plus=0	max_min_right=65	max_min_right_minus=65	max_min_right_plus=65	max_pos_hash_score=552	max_right=147	max_right_minus=147	max_right_plus=65	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.521e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.26	side_1_overlap=18	side_1_possible_overlap_registers=294	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	243	.	NC_000913	3469004	-1	NC_000913	3469308	1	0	alignment_overlap=6	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.284e-02	junction_possible_overlap_registers=288	key=NC_000913__3469004__-1__NC_000913__3469302__1__6____300__300__0__0	max_left=138	max_left_minus=138	max_left_plus=138	max_min_left=111	max_min_left_minus=111	max_min_left_plus=27	max_min_right=138	max_min_right_minus=138	max_min_right_plus=138	max_pos_hash_score=576	max_right=205	max_right_minus=205	max_right_plus=205	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.11	new_junction_read_count=8	polymorphism_frequency=9.284e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=6	side_1_possible_overlap_registers=294	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=8
JC	244	.	NC_000913	3621836	-1	NC_000913	3622017	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.100e-01	junction_possible_overlap_registers=282	key=NC_000913__3621848__-1__NC_000913__3622017__1__12____300__300__1__0	max_left=139	max_left_minus=139	max_left_plus=114	max_min_left=139	max_min_left_minus=139	max_min_left_plus=114	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=564	max_right=270	max_right_minus=149	max_right_plus=270	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=6.100e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=12	side_2_possible_overlap_registers=294	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=3
JC	245	.	NC_000913	3708466	-1	NC_000913	3708635	1	0	alignment_overlap=108	coverage_minus=22	coverage_plus=24	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=186	key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0	max_left=185	max_left_minus=134	max_left_plus=185	max_min_left=92	max_min_left_minus=84	max_min_left_plus=92	max_min_right=92	max_min_right_minus=63	max_min_right_plus=92	max_pos_hash_score=372	max_right=189	max_right_minus=189	max_right_plus=179	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=1.08	new_junction_read_count=49	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=108	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=186	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	246	.	NC_000913	3764827	-1	NC_000913	3765008	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.104e-01	junction_possible_overlap_registers=282	key=NC_000913__3764839__-1__NC_000913__3765008__1__12____300__300__1__0	max_left=139	max_left_minus=139	max_left_plus=114	max_min_left=139	max_min_left_minus=139	max_min_left_plus=114	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=564	max_right=270	max_right_minus=149	max_right_plus=270	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.104e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=12	side_2_possible_overlap_registers=294	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=3
JC	247	.	NC_000913	3822646	1	NC_000913	3822651	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0	max_left=296	max_left_minus=277	max_left_plus=296	max_min_left=148	max_min_left_minus=148	max_min_left_plus=142	max_min_right=128	max_min_right_minus=128	max_min_right_plus=124	max_pos_hash_score=588	max_right=293	max_right_minus=250	max_right_plus=293	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.76	new_junction_read_count=55	polymorphism_frequency=9.402e-01	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=5	side_2_redundant=0	total_non_overlap_reads=53
JC	248	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=5	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.484e-01	junction_possible_overlap_registers=205	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=139	max_left_minus=139	max_left_plus=73	max_min_left=73	max_min_left_minus=44	max_min_left_plus=73	max_min_right=72	max_min_right_minus=72	max_min_right_plus=0	max_pos_hash_score=410	max_right=167	max_right_minus=167	max_right_plus=163	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.16	new_junction_read_count=8	polymorphism_frequency=1.484e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=89	side_1_possible_overlap_registers=294	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=8
UN	249	.	NC_000913	15654	15655
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UN	402	.	NC_000913	3944313	3944313
UN	403	.	NC_000913	3944315	3945327
UN	404	.	NC_000913	3945330	3945332
UN	405	.	NC_000913	3945335	3945336
UN	406	.	NC_000913	3945352	3945352
UN	407	.	NC_000913	4035432	4035432
UN	408	.	NC_000913	4035435	4036854
UN	409	.	NC_000913	4036856	4036856
UN	410	.	NC_000913	4038100	4038404
UN	411	.	NC_000913	4038978	4039108
UN	412	.	NC_000913	4039672	4040331
UN	413	.	NC_000913	4166551	4166575
UN	414	.	NC_000913	4166579	4166579
UN	415	.	NC_000913	4166585	4166589
UN	416	.	NC_000913	4166914	4167963
UN	417	.	NC_000913	4168835	4168837
UN	418	.	NC_000913	4168839	4168839
UN	419	.	NC_000913	4168843	4171368
UN	420	.	NC_000913	4176829	4176862
UN	421	.	NC_000913	4176864	4176864
UN	422	.	NC_000913	4176869	4176869
UN	423	.	NC_000913	4176871	4176871
UN	424	.	NC_000913	4208395	4209479
UN	425	.	NC_000913	4210266	4212873
UN	426	.	NC_000913	4212876	4212876
UN	427	.	NC_000913	4498470	4499245
UN	428	.	NC_000913	4507743	4507743
UN	429	.	NC_000913	4507746	4508425
UN	430	.	NC_000913	4508428	4508428