#=GENOME_DIFF 1.0 #=CREATED 14:56:01 10 Oct 2025 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8573_S15_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8573_S15_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8573_S15_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=REFSEQ /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8573_S15_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8573_S15_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=CONVERTED-BASES 419239295 #=CONVERTED-READS 1416214 #=INPUT-BASES 419318421 #=INPUT-READS 1416486 #=MAPPED-BASES 394837607 #=MAPPED-READS 1334546 SNP 1 579 NC_000913 1903 A SNP 2 580 NC_000913 34233 G SNP 3 581 NC_000913 42108 A SNP 4 583 NC_000913 76249 A SNP 5 585 NC_000913 246747 T DEL 6 1260,1277 NC_000913 257908 776 SNP 7 586 NC_000913 284535 G SNP 8 587 NC_000913 313543 A DEL 9 1261,1282 NC_000913 366181 93 SNP 10 589 NC_000913 367573 A SUB 11 601,602 NC_000913 480295 2 AA SNP 12 603 NC_000913 662269 T SNP 13 604 NC_000913 696470 T SNP 14 609 NC_000913 968837 A SNP 15 610 NC_000913 1040126 T SNP 16 611 NC_000913 1061935 A SNP 17 612 NC_000913 1069743 T SNP 18 615 NC_000913 1098620 A SUB 19 617,618 NC_000913 1111727 2 TT SNP 20 619 NC_000913 1169836 G SNP 21 620 NC_000913 1189980 G SNP 22 621 NC_000913 1196220 T SNP 23 622 NC_000913 1196232 T SNP 24 623 NC_000913 1196245 C SNP 25 624 NC_000913 1196247 G SNP 26 635 NC_000913 1301992 T DEL 27 636 NC_000913 1302454 1 SNP 28 637 NC_000913 1306736 G SNP 29 638 NC_000913 1310770 G SNP 30 640 NC_000913 1337394 G INS 31 641,642 NC_000913 1343293 GA SNP 32 643 NC_000913 1357202 T SNP 33 644 NC_000913 1358859 C DEL 34 1263,1296 NC_000913 1367750 176 SNP 35 647 NC_000913 1428052 C SNP 36 648 NC_000913 1428097 C SNP 37 653 NC_000913 1428451 C SNP 38 654 NC_000913 1428463 A SNP 39 655 NC_000913 1428487 A SNP 40 660 NC_000913 1600234 T SNP 41 661 NC_000913 1601098 A SNP 42 662 NC_000913 1601103 T SNP 43 663 NC_000913 1632712 G SNP 44 664 NC_000913 1632735 A SNP 45 665 NC_000913 1632770 C SNP 46 666 NC_000913 1641002 C SNP 47 667 NC_000913 1643679 T SNP 48 668 NC_000913 1649971 T SNP 49 669 NC_000913 1652331 C SNP 50 671 NC_000913 1688938 T SNP 51 672 NC_000913 1702757 T SNP 52 673 NC_000913 1729510 G SNP 53 674 NC_000913 1764640 A DEL 54 675 NC_000913 1793377 1 SNP 55 677 NC_000913 1861827 T SNP 56 678 NC_000913 1874202 A SNP 57 679 NC_000913 1894839 C SUB 58 680,681 NC_000913 1911929 2 TT SNP 59 683 NC_000913 2040433 A SNP 60 685 NC_000913 2142163 A SNP 61 686 NC_000913 2146017 T SNP 62 687 NC_000913 2155880 T DEL 63 689,690 NC_000913 2173363 2 SNP 64 691 NC_000913 2173448 T SNP 65 692 NC_000913 2177670 A SNP 66 693 NC_000913 2219948 T SNP 67 694 NC_000913 2224169 G SNP 68 695 NC_000913 2237105 T MOB 69 1302,1304 NC_000913 2237871 IS1 -1 9 SUB 70 697,698 NC_000913 2264460 2 AT SNP 71 700 NC_000913 2319078 A SNP 72 701 NC_000913 2338564 G DEL 73 702 NC_000913 2360550 1 SNP 74 703 NC_000913 2392233 G SNP 75 704 NC_000913 2423891 T SNP 76 705 NC_000913 2443447 A SNP 77 706 NC_000913 2471806 A SNP 78 707 NC_000913 2473392 A INS 79 708 NC_000913 2473397 T SNP 80 709 NC_000913 2485434 T SNP 81 710 NC_000913 2510609 T DEL 82 1267,1308 NC_000913 2558699 6790 DEL 83 711 NC_000913 2577911 1 SNP 84 712 NC_000913 2587112 T SNP 85 713 NC_000913 2630852 A SNP 86 714 NC_000913 2710736 T SNP 87 716 NC_000913 2731957 T SNP 88 717 NC_000913 2732992 A SNP 89 718 NC_000913 2764599 A SNP 90 719 NC_000913 2788391 T SNP 91 720 NC_000913 2800969 A SNP 92 721 NC_000913 2804133 T DEL 93 722 NC_000913 2814459 1 SNP 94 723 NC_000913 2814461 T SNP 95 725 NC_000913 2867455 A SNP 96 726 NC_000913 2880635 C SNP 97 727 NC_000913 2881212 T SNP 98 728 NC_000913 2883115 A SNP 99 729 NC_000913 2886731 C SNP 100 730 NC_000913 2890626 A SNP 101 731 NC_000913 2893219 T SNP 102 732 NC_000913 2893647 T SNP 103 733 NC_000913 2894839 T SNP 104 734 NC_000913 2916216 A SNP 105 735 NC_000913 2926772 A SNP 106 739 NC_000913 3050472 A SNP 107 742 NC_000913 3061168 A SNP 108 743 NC_000913 3061916 T SNP 109 744 NC_000913 3065449 A SNP 110 745 NC_000913 3065861 A SNP 111 746 NC_000913 3089260 C SNP 112 747 NC_000913 3090968 A SNP 113 748 NC_000913 3104887 A SNP 114 749 NC_000913 3120786 A SNP 115 750 NC_000913 3121033 C SNP 116 751 NC_000913 3127981 A SNP 117 752 NC_000913 3130161 A SNP 118 753 NC_000913 3132077 A SNP 119 754 NC_000913 3133175 A SNP 120 755 NC_000913 3134263 A SNP 121 756 NC_000913 3145944 A SNP 122 757 NC_000913 3150316 A SNP 123 758 NC_000913 3162216 A SNP 124 759 NC_000913 3176625 A SNP 125 760 NC_000913 3179383 A SNP 126 762 NC_000913 3186297 A SNP 127 763 NC_000913 3193351 A SNP 128 764 NC_000913 3204617 A DEL 129 765 NC_000913 3207549 1 SNP 130 766 NC_000913 3219128 A SNP 131 767 NC_000913 3224895 T SNP 132 768 NC_000913 3227339 T SNP 133 769 NC_000913 3240423 T SNP 134 770 NC_000913 3240842 C SNP 135 771 NC_000913 3256157 T SNP 136 772 NC_000913 3270497 T SNP 137 773 NC_000913 3275902 T SNP 138 774 NC_000913 3292312 T SUB 139 775,776 NC_000913 3336411 2 AT SNP 140 777 NC_000913 3388041 G SNP 141 781 NC_000913 3436697 A SNP 142 782 NC_000913 3452547 G SNP 143 783 NC_000913 3474424 G INS 144 784 NC_000913 3560455 G SNP 145 785 NC_000913 3622770 A SNP 146 786 NC_000913 3635116 A SNP 147 787 NC_000913 3698243 A SNP 148 788 NC_000913 3707947 A SNP 149 789 NC_000913 3725176 G SNP 150 791 NC_000913 3785125 A SNP 151 792 NC_000913 3785142 C SNP 152 793 NC_000913 3785264 C SNP 153 794 NC_000913 3785316 T SNP 154 795 NC_000913 3785397 G SNP 155 796 NC_000913 3785550 A SNP 156 797 NC_000913 3785589 T SNP 157 798 NC_000913 3785595 A SNP 158 799 NC_000913 3785730 C SNP 159 800 NC_000913 3785766 T SNP 160 801 NC_000913 3785772 G SNP 161 802 NC_000913 3785781 T SNP 162 803 NC_000913 3785786 A SNP 163 804 NC_000913 3785790 T SNP 164 805 NC_000913 3785859 T SNP 165 806 NC_000913 3785868 C SNP 166 807 NC_000913 3785895 T SNP 167 808 NC_000913 3785913 T SNP 168 809 NC_000913 3785934 A SNP 169 810 NC_000913 3785955 C SNP 170 811 NC_000913 3785958 C SNP 171 812 NC_000913 3785961 G SNP 172 813 NC_000913 3785982 T SNP 173 814 NC_000913 3785988 A SNP 174 815 NC_000913 3786003 T SNP 175 816 NC_000913 3786027 G SNP 176 817 NC_000913 3786063 C SNP 177 818 NC_000913 3786078 A SNP 178 819 NC_000913 3786084 A SNP 179 820 NC_000913 3786090 A SNP 180 821 NC_000913 3786099 C SNP 181 822 NC_000913 3786444 T SNP 182 823 NC_000913 3786465 T SNP 183 824 NC_000913 3786519 A SNP 184 825 NC_000913 3786606 A SNP 185 826 NC_000913 3786704 C SNP 186 827 NC_000913 3786936 T SNP 187 828 NC_000913 3786972 C SNP 188 829 NC_000913 3786975 T SNP 189 830 NC_000913 3786984 G SNP 190 831 NC_000913 3787224 A SNP 191 832 NC_000913 3787389 A SNP 192 833 NC_000913 3787416 A SNP 193 834 NC_000913 3787449 T SNP 194 835 NC_000913 3787455 T SNP 195 836 NC_000913 3787476 G SNP 196 837 NC_000913 3787485 A SNP 197 838 NC_000913 3787509 G SNP 198 839 NC_000913 3787513 C SNP 199 840 NC_000913 3787515 A SNP 200 841 NC_000913 3787518 T SNP 201 842 NC_000913 3787521 A SNP 202 843 NC_000913 3787527 T SNP 203 844 NC_000913 3787698 A SNP 204 845 NC_000913 3787701 T SNP 205 846 NC_000913 3787707 C SNP 206 847 NC_000913 3787713 T SNP 207 848 NC_000913 3787773 G SNP 208 849 NC_000913 3787803 G SNP 209 850 NC_000913 3787809 G SNP 210 851 NC_000913 3787812 T SNP 211 852 NC_000913 3787818 C SNP 212 853 NC_000913 3787992 A SNP 213 854 NC_000913 3788241 C SUB 214 855,856 NC_000913 3788349 2 AC SNP 215 857 NC_000913 3788382 G SNP 216 858 NC_000913 3788475 T SNP 217 859 NC_000913 3788523 A SNP 218 860 NC_000913 3788598 T SNP 219 861 NC_000913 3788628 G SNP 220 862 NC_000913 3788646 G SNP 221 863 NC_000913 3788649 C SNP 222 864 NC_000913 3788688 T SNP 223 865 NC_000913 3788709 A SNP 224 866 NC_000913 3788737 T SNP 225 867 NC_000913 3788752 C SNP 226 868 NC_000913 3788754 A SUB 227 869,870 NC_000913 3789039 2 AC SNP 228 871 NC_000913 3789146 C SNP 229 872 NC_000913 3789272 T SNP 230 873 NC_000913 3789309 G SNP 231 874 NC_000913 3789479 A SNP 232 875 NC_000913 3789563 G SNP 233 876 NC_000913 3789647 A SNP 234 877 NC_000913 3789669 C SNP 235 878 NC_000913 3789755 T SNP 236 879 NC_000913 3789919 G SNP 237 880 NC_000913 3790401 C SNP 238 881 NC_000913 3790407 A SNP 239 882 NC_000913 3790422 G SNP 240 883 NC_000913 3790491 G SNP 241 884 NC_000913 3790509 C SNP 242 885 NC_000913 3790524 T SNP 243 886 NC_000913 3790533 T SNP 244 887 NC_000913 3790536 C SNP 245 888 NC_000913 3790542 G SNP 246 889 NC_000913 3790548 A SNP 247 890 NC_000913 3790551 T SNP 248 891 NC_000913 3790575 A SNP 249 892 NC_000913 3790584 G SNP 250 893 NC_000913 3790596 G SNP 251 894 NC_000913 3790650 G SNP 252 895 NC_000913 3790665 C SUB 253 896,897 NC_000913 3790667 2 GT SNP 254 898 NC_000913 3790671 T SNP 255 899 NC_000913 3790680 A SNP 256 900 NC_000913 3790686 A SNP 257 901 NC_000913 3790689 G SNP 258 902 NC_000913 3790698 A SNP 259 903 NC_000913 3790707 G SNP 260 904 NC_000913 3790731 G SNP 261 905 NC_000913 3790740 T SNP 262 906 NC_000913 3790743 G SNP 263 907 NC_000913 3790746 A SNP 264 908 NC_000913 3790749 A SNP 265 909 NC_000913 3790755 A SNP 266 910 NC_000913 3790809 A SNP 267 911 NC_000913 3790821 T SNP 268 912 NC_000913 3790827 A SNP 269 913 NC_000913 3790839 G SNP 270 914 NC_000913 3790851 C SNP 271 915 NC_000913 3790857 A SNP 272 916 NC_000913 3790866 G SNP 273 917 NC_000913 3790911 G SUB 274 918,919 NC_000913 3790913 2 AA SNP 275 920 NC_000913 3790917 C SNP 276 921 NC_000913 3790919 G SNP 277 922 NC_000913 3790923 G SNP 278 923 NC_000913 3790929 G SNP 279 924 NC_000913 3790938 T SNP 280 925 NC_000913 3790959 C SNP 281 926 NC_000913 3790983 G SNP 282 927 NC_000913 3790995 A SNP 283 928 NC_000913 3790998 G SNP 284 929 NC_000913 3791004 G SNP 285 930 NC_000913 3791007 G SNP 286 931 NC_000913 3791013 G SNP 287 932 NC_000913 3791030 G SNP 288 933 NC_000913 3791043 G SNP 289 934 NC_000913 3791058 A SNP 290 935 NC_000913 3791061 G SNP 291 936 NC_000913 3791067 G SNP 292 937 NC_000913 3791085 T SNP 293 938 NC_000913 3791091 G SNP 294 939 NC_000913 3791103 A SNP 295 940 NC_000913 3791109 A SNP 296 941 NC_000913 3791130 G SNP 297 942 NC_000913 3791133 G SNP 298 943 NC_000913 3791139 T SNP 299 944 NC_000913 3791160 A SNP 300 945 NC_000913 3791163 G SNP 301 946 NC_000913 3791166 A SNP 302 947 NC_000913 3791184 A SNP 303 948 NC_000913 3791211 G SNP 304 949 NC_000913 3791259 T SNP 305 950 NC_000913 3791274 A SNP 306 951 NC_000913 3791277 C SUB 307 952,953 NC_000913 3791286 2 CT SNP 308 954 NC_000913 3791346 T SNP 309 955 NC_000913 3791391 G SNP 310 956 NC_000913 3791406 G SNP 311 957 NC_000913 3791496 G SNP 312 958 NC_000913 3791526 A SNP 313 959 NC_000913 3791553 G SNP 314 960 NC_000913 3791661 C SNP 315 961 NC_000913 3791676 A SNP 316 962 NC_000913 3791688 C SNP 317 963 NC_000913 3791694 A SNP 318 964 NC_000913 3791700 A SNP 319 965 NC_000913 3791706 G SNP 320 966 NC_000913 3791712 A SNP 321 967 NC_000913 3791829 T SNP 322 968 NC_000913 3791832 G SNP 323 969 NC_000913 3791889 G SNP 324 970 NC_000913 3791943 G SNP 325 971 NC_000913 3791976 A SNP 326 972 NC_000913 3791997 C SNP 327 973 NC_000913 3792018 A SNP 328 974 NC_000913 3792023 A SNP 329 975 NC_000913 3792114 A SNP 330 976 NC_000913 3792180 G SNP 331 977 NC_000913 3792186 C SNP 332 978 NC_000913 3792258 T SNP 333 979 NC_000913 3792375 C SNP 334 980 NC_000913 3792402 A SNP 335 981 NC_000913 3792501 G SNP 336 982 NC_000913 3792616 G SUB 337 1269,1323 NC_000913 3792656 1283 CCATCAATCTCACTTTTGGCGAATGGCTGAAGCCAACGCCGTGTAGTGATATGATAGAAGT SNP 338 983 NC_000913 3794037 G SNP 339 984 NC_000913 3794122 G SNP 340 985 NC_000913 3794130 G SNP 341 986 NC_000913 3794217 A SNP 342 987 NC_000913 3794241 T SNP 343 988 NC_000913 3794280 A SNP 344 989 NC_000913 3794298 T SNP 345 990 NC_000913 3794307 C SNP 346 991 NC_000913 3794325 T SNP 347 992 NC_000913 3794328 A SNP 348 993 NC_000913 3794337 G SNP 349 994 NC_000913 3794640 A SNP 350 995 NC_000913 3794646 A SNP 351 996 NC_000913 3794649 C SNP 352 997 NC_000913 3794721 T SNP 353 998 NC_000913 3794829 G SNP 354 999 NC_000913 3795093 C SNP 355 1000 NC_000913 3795192 A SNP 356 1001 NC_000913 3795334 G SNP 357 1002 NC_000913 3795336 C SNP 358 1003 NC_000913 3795366 T SNP 359 1004 NC_000913 3795369 C SNP 360 1005 NC_000913 3795480 C SNP 361 1006 NC_000913 3795591 T SNP 362 1007 NC_000913 3795744 A SNP 363 1008 NC_000913 3795750 C SNP 364 1009 NC_000913 3795847 C SNP 365 1010 NC_000913 3795909 G SNP 366 1011 NC_000913 3796197 T SNP 367 1012 NC_000913 3796254 T SUB 368 1013,1014 NC_000913 3796317 2 AT SNP 369 1015 NC_000913 3796344 G SNP 370 1016 NC_000913 3796432 C SNP 371 1017 NC_000913 3796473 T SNP 372 1018 NC_000913 3796485 C SNP 373 1019 NC_000913 3796755 A SNP 374 1020 NC_000913 3796782 A SNP 375 1029 NC_000913 3808017 C SNP 376 1030 NC_000913 3808030 G SNP 377 1031 NC_000913 3808036 G SNP 378 1032 NC_000913 3808042 T SUB 379 1033,1034 NC_000913 3808044 2 TT SNP 380 1035 NC_000913 3808048 C SNP 381 1036 NC_000913 3808053 A SNP 382 1037 NC_000913 3808057 A SNP 383 1038 NC_000913 3808063 G SNP 384 1039 NC_000913 3808091 A SNP 385 1040 NC_000913 3808093 A SNP 386 1041 NC_000913 3808102 A SNP 387 1042 NC_000913 3808107 G SUB 388 1043,1044 NC_000913 3808110 2 AA SNP 389 1045 NC_000913 3808115 C SNP 390 1046 NC_000913 3808129 A SNP 391 1047 NC_000913 3808135 A SUB 392 1048,1049 NC_000913 3808138 2 TA INS 393 1050 NC_000913 3808147 T INS 394 1051 NC_000913 3808149 T SNP 395 1052 NC_000913 3808151 A SNP 396 1053 NC_000913 3808156 A SNP 397 1054 NC_000913 3808159 C SNP 398 1055 NC_000913 3808161 A INS 399 1056 NC_000913 3808166 G SNP 400 1057 NC_000913 3808168 G DEL 401 1058 NC_000913 3808180 1 repeat_length=1 repeat_new_copies=5 repeat_ref_copies=6 repeat_seq=A SNP 402 1059 NC_000913 3808186 T SNP 403 1060 NC_000913 3808224 C SNP 404 1067 NC_000913 3808731 G SNP 405 1068 NC_000913 3808785 T SNP 406 1069 NC_000913 3808866 C SNP 407 1070 NC_000913 3808878 G SNP 408 1071 NC_000913 3809082 C SNP 409 1072 NC_000913 3809085 C SNP 410 1073 NC_000913 3809136 C SNP 411 1074 NC_000913 3809142 A SNP 412 1075 NC_000913 3809352 A SNP 413 1076 NC_000913 3809376 T SNP 414 1077 NC_000913 3809454 G SNP 415 1078 NC_000913 3809487 C SUB 416 1079,1080 NC_000913 3809664 2 GT SNP 417 1081 NC_000913 3809905 A SUB 418 1082,1083 NC_000913 3809982 2 AG SNP 419 1084 NC_000913 3810043 G SNP 420 1085 NC_000913 3810106 G SNP 421 1086 NC_000913 3810430 G SNP 422 1087 NC_000913 3810460 C SNP 423 1088 NC_000913 3810772 A SNP 424 1089 NC_000913 3810774 C SNP 425 1090 NC_000913 3810781 G SNP 426 1091 NC_000913 3810784 G SNP 427 1092 NC_000913 3810853 A SNP 428 1093 NC_000913 3810937 C SNP 429 1094 NC_000913 3811075 C SNP 430 1095 NC_000913 3811120 A SNP 431 1096 NC_000913 3811179 A SNP 432 1097 NC_000913 3811231 C SNP 433 1098 NC_000913 3812146 G SNP 434 1099 NC_000913 3812170 T SNP 435 1100 NC_000913 3812238 G SNP 436 1101 NC_000913 3812296 T SNP 437 1102 NC_000913 3812338 T SNP 438 1103 NC_000913 3812356 A SNP 439 1104 NC_000913 3812547 C SNP 440 1105 NC_000913 3812601 C SNP 441 1106 NC_000913 3812637 T SNP 442 1107 NC_000913 3812729 A SNP 443 1108 NC_000913 3812920 T SNP 444 1109 NC_000913 3813207 A SNP 445 1110 NC_000913 3813216 C SNP 446 1111 NC_000913 3813258 A SNP 447 1112 NC_000913 3813264 T SNP 448 1113 NC_000913 3813342 C SNP 449 1114 NC_000913 3813594 A SNP 450 1115 NC_000913 3814040 G SNP 451 1116 NC_000913 3814231 T SNP 452 1117 NC_000913 3814661 T SNP 453 1118 NC_000913 3814718 T SNP 454 1119 NC_000913 3814904 T SNP 455 1120 NC_000913 3815024 G SNP 456 1121 NC_000913 3815292 C SNP 457 1122 NC_000913 3815307 A SNP 458 1123 NC_000913 3815319 T INS 459 1124 NC_000913 3815883 C SNP 460 1125 NC_000913 3815893 C SNP 461 1126 NC_000913 3815903 G SNP 462 1127 NC_000913 3816007 T SUB 463 1128,1129 NC_000913 3816036 2 TT SNP 464 1130 NC_000913 3816043 A SNP 465 1131 NC_000913 3816049 T SNP 466 1132 NC_000913 3816055 A SNP 467 1133 NC_000913 3816067 C SNP 468 1134 NC_000913 3816088 T SNP 469 1135 NC_000913 3816137 G SNP 470 1136 NC_000913 3816148 A SNP 471 1137 NC_000913 3816166 A SNP 472 1138 NC_000913 3816259 T SNP 473 1139 NC_000913 3816316 T SNP 474 1140 NC_000913 3816349 C SNP 475 1141 NC_000913 3816358 A SNP 476 1142 NC_000913 3816406 A SNP 477 1143 NC_000913 3816439 T SNP 478 1144 NC_000913 3817090 A SNP 479 1145 NC_000913 3817224 A SUB 480 1146,1147 NC_000913 3817227 2 CT SNP 481 1148 NC_000913 3817257 T SUB 482 1149,1150 NC_000913 3817260 2 GT SUB 483 1151,1152 NC_000913 3817287 2 GT SNP 484 1153 NC_000913 3817332 C SNP 485 1154 NC_000913 3817350 T SNP 486 1155 NC_000913 3817359 G SNP 487 1156 NC_000913 3817386 C SNP 488 1157 NC_000913 3817404 C SNP 489 1158 NC_000913 3817482 G SNP 490 1159 NC_000913 3817485 T SNP 491 1160 NC_000913 3817530 T SNP 492 1161 NC_000913 3817533 T SNP 493 1162 NC_000913 3817536 G SNP 494 1163 NC_000913 3817548 A SNP 495 1164 NC_000913 3817550 T SNP 496 1165 NC_000913 3817565 A INS 497 1166 NC_000913 3817583 C DEL 498 1167 NC_000913 3817618 1 SNP 499 1170 NC_000913 3818062 T SNP 500 1171 NC_000913 3818077 A SNP 501 1172 NC_000913 3818113 G SNP 502 1173 NC_000913 3818128 T SNP 503 1174 NC_000913 3818131 C SNP 504 1175 NC_000913 3818133 G SNP 505 1176 NC_000913 3818161 T SNP 506 1177 NC_000913 3818176 A SNP 507 1178 NC_000913 3818212 G SNP 508 1179 NC_000913 3818226 G SUB 509 1180,1181 NC_000913 3818238 2 TC SNP 510 1182 NC_000913 3818271 G SNP 511 1183 NC_000913 3818302 C SNP 512 1184 NC_000913 3818305 C SNP 513 1185 NC_000913 3818331 G SNP 514 1186 NC_000913 3818374 G SNP 515 1187 NC_000913 3818443 T SNP 516 1188 NC_000913 3818446 T SNP 517 1189 NC_000913 3818468 A SNP 518 1190 NC_000913 3818617 T SNP 519 1191 NC_000913 3818636 A SNP 520 1192 NC_000913 3818647 G SNP 521 1193 NC_000913 3818666 C INS 522 1194,1195 NC_000913 3818684 AC SNP 523 1196 NC_000913 3818691 A SUB 524 1197,1198 NC_000913 3818749 2 AC SNP 525 1199 NC_000913 3818797 T SNP 526 1200 NC_000913 3818801 A SNP 527 1201 NC_000913 3818828 A SNP 528 1202 NC_000913 3818930 T SNP 529 1203 NC_000913 3818942 G SNP 530 1204 NC_000913 3818948 C SNP 531 1205 NC_000913 3819158 T SNP 532 1206 NC_000913 3819185 C SNP 533 1207 NC_000913 3819584 C SNP 534 1208 NC_000913 3819833 C SNP 535 1209 NC_000913 3819866 G SNP 536 1210 NC_000913 3820036 T SNP 537 1211 NC_000913 3820223 C SNP 538 1212 NC_000913 3821143 T SNP 539 1213 NC_000913 3821188 G SNP 540 1215 NC_000913 3877783 T SNP 541 1216 NC_000913 3890364 T SNP 542 1218 NC_000913 3937909 A SNP 543 1219 NC_000913 3937997 A DEL 544 1220 NC_000913 3938441 1 SNP 545 1221 NC_000913 3941874 T SNP 546 1222 NC_000913 3946246 A SNP 547 1223 NC_000913 3950099 T SNP 548 1224 NC_000913 3956003 A SNP 549 1225 NC_000913 4043253 A SNP 550 1226 NC_000913 4084932 T SNP 551 1228 NC_000913 4139298 A SNP 552 1229 NC_000913 4160157 A SNP 553 1230 NC_000913 4171728 T SNP 554 1231 NC_000913 4171781 G SNP 555 1232 NC_000913 4193996 G SNP 556 1233 NC_000913 4223638 C INS 557 1237,1238 NC_000913 4296381 GC SNP 558 1239 NC_000913 4325644 T MOB 559 1303,1318 NC_000913 4434629 IS1 -1 8 SNP 560 1240 NC_000913 4486869 A SNP 561 1241 NC_000913 4510238 G SNP 562 1242 NC_000913 4532409 G SNP 563 1243 NC_000913 4546601 T SNP 564 1244 NC_000913 4570611 T SNP 565 1245 NC_000913 4577507 T SNP 566 1246 NC_000913 4579610 T SNP 567 1247 NC_000913 4583579 T SNP 568 1248 NC_000913 4588910 T SNP 569 1249 NC_000913 4595093 T SNP 570 1250 NC_000913 4595749 T SNP 571 1251 NC_000913 4597626 T SNP 572 1252 NC_000913 4608401 T DEL 573 1253,1254 NC_000913 4619121 2 repeat_length=2 repeat_new_copies=3 repeat_ref_copies=4 repeat_seq=CG SNP 574 1255 NC_000913 4619389 T SNP 575 1256 NC_000913 4624763 A SNP 576 1257 NC_000913 4627574 T SNP 577 1258 NC_000913 4636925 C SNP 578 1259 NC_000913 4638240 A RA 579 . NC_000913 1903 0 G A consensus_score=304.6 frequency=1 major_base=A major_cov=61/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/31 RA 580 . NC_000913 34233 0 A G bias_e_value=1729290 bias_p_value=0.372559 consensus_score=443.0 fisher_strand_p_value=0.119118 frequency=1 ks_quality_p_value=1 major_base=G major_cov=64/60 major_frequency=9.688e-01 minor_base=T minor_cov=0/4 new_cov=64/60 polymorphism_frequency=9.688e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/64 RA 581 . NC_000913 42108 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=410.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=65/59 major_frequency=9.920e-01 minor_base=C minor_cov=1/0 new_cov=65/59 polymorphism_frequency=9.920e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/59 RA 582 . NC_000913 58065 0 C A bias_e_value=0.0120771 bias_p_value=2.60189e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=75.3 fisher_strand_p_value=1.08671e-10 frequency=4.595e-01 ks_quality_p_value=1 major_base=C major_cov=13/27 major_frequency=5.405e-01 minor_base=A minor_cov=34/0 new_cov=34/0 polymorphism_frequency=4.595e-01 polymorphism_score=27.9 prediction=polymorphism ref_cov=13/27 total_cov=47/27 RA 583 . NC_000913 76249 0 G A consensus_score=232.7 frequency=1 major_base=A major_cov=34/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/33 RA 584 . NC_000913 141849 0 C A bias_e_value=0.243836 bias_p_value=5.25321e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=244.3 fisher_strand_p_value=2.52599e-09 frequency=2.131e-01 ks_quality_p_value=1 major_base=C major_cov=38/58 major_frequency=7.869e-01 minor_base=A minor_cov=26/0 new_cov=26/0 polymorphism_frequency=2.131e-01 polymorphism_score=17.5 prediction=polymorphism ref_cov=38/58 total_cov=64/58 RA 585 . NC_000913 246747 0 G T bias_e_value=3882580 bias_p_value=0.836465 consensus_score=730.0 fisher_strand_p_value=0.485714 frequency=1 ks_quality_p_value=1 major_base=T major_cov=108/101 major_frequency=9.952e-01 minor_base=G minor_cov=0/1 new_cov=108/101 polymorphism_frequency=9.952e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=108/102 RA 586 . NC_000913 284535 0 T G consensus_score=167.2 frequency=1 major_base=G major_cov=26/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/23 RA 587 . NC_000913 313543 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=461.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=76/66 major_frequency=9.930e-01 minor_base=C minor_cov=1/0 new_cov=76/66 polymorphism_frequency=9.930e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=77/66 RA 588 . NC_000913 320845 0 C A bias_e_value=2.14391 bias_p_value=4.61885e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=173.8 fisher_strand_p_value=2.49586e-08 frequency=3.451e-01 ks_quality_p_value=1 major_base=C major_cov=58/35 major_frequency=6.549e-01 minor_base=A minor_cov=49/0 new_cov=49/0 polymorphism_frequency=3.451e-01 polymorphism_score=20.8 prediction=polymorphism ref_cov=58/35 total_cov=107/35 RA 589 . NC_000913 367573 0 G A consensus_score=272.1 frequency=1 major_base=A major_cov=38/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/43 RA 590 . NC_000913 377402 0 G A bias_e_value=1912780 bias_p_value=0.412091 consensus_reject=FREQUENCY_CUTOFF consensus_score=90.4 fisher_strand_p_value=0.146117 frequency=3.462e-01 ks_quality_p_value=0.947149 major_base=G major_cov=34/17 major_frequency=6.538e-01 minor_base=A minor_cov=13/14 new_cov=13/14 polymorphism_frequency=3.462e-01 polymorphism_score=68.1 prediction=polymorphism ref_cov=34/17 total_cov=47/31 RA 591 . NC_000913 377407 0 C T bias_e_value=3098240 bias_p_value=0.667487 consensus_reject=FREQUENCY_CUTOFF consensus_score=69.3 fisher_strand_p_value=0.326312 frequency=3.750e-01 ks_quality_p_value=0.935507 major_base=C major_cov=28/17 major_frequency=6.250e-01 minor_base=T minor_cov=13/14 new_cov=13/14 polymorphism_frequency=3.750e-01 polymorphism_score=75.9 prediction=polymorphism ref_cov=28/17 total_cov=41/31 RA 592 . NC_000913 377423 0 G T bias_e_value=3377730 bias_p_value=0.727699 consensus_reject=FREQUENCY_CUTOFF consensus_score=99.8 fisher_strand_p_value=0.606427 frequency=3.333e-01 ks_quality_p_value=0.593487 major_base=G major_cov=28/18 major_frequency=6.667e-01 minor_base=T minor_cov=12/11 new_cov=12/11 polymorphism_frequency=3.333e-01 polymorphism_score=50.3 prediction=polymorphism ref_cov=28/18 total_cov=40/29 RA 593 . NC_000913 377425 0 C T bias_e_value=3996140 bias_p_value=0.860931 consensus_reject=FREQUENCY_CUTOFF consensus_score=104.5 fisher_strand_p_value=0.620697 frequency=3.108e-01 ks_quality_p_value=0.839963 major_base=C major_cov=30/21 major_frequency=6.892e-01 minor_base=T minor_cov=12/11 new_cov=12/11 polymorphism_frequency=3.108e-01 polymorphism_score=61.1 prediction=polymorphism ref_cov=30/21 total_cov=42/32 RA 594 . NC_000913 377431 1 . T bias_e_value=3783860 bias_p_value=0.815196 consensus_reject=FREQUENCY_CUTOFF consensus_score=154.4 fisher_strand_p_value=0.613477 frequency=3.151e-01 ks_quality_p_value=0.745625 major_base=. major_cov=30/20 major_frequency=6.849e-01 minor_base=T minor_cov=12/11 new_cov=12/11 polymorphism_frequency=3.151e-01 polymorphism_score=114.3 prediction=polymorphism ref_cov=30/20 total_cov=42/31 RA 595 . NC_000913 377432 0 C G bias_e_value=4200040 bias_p_value=0.904859 consensus_reject=FREQUENCY_CUTOFF consensus_score=122.3 fisher_strand_p_value=0.613477 frequency=3.151e-01 ks_quality_p_value=0.972836 major_base=C major_cov=30/20 major_frequency=6.849e-01 minor_base=G minor_cov=12/11 new_cov=12/11 polymorphism_frequency=3.151e-01 polymorphism_score=75.0 prediction=polymorphism ref_cov=30/20 total_cov=42/31 RA 596 . NC_000913 377450 0 T G bias_e_value=4148590 bias_p_value=0.893775 consensus_reject=FREQUENCY_CUTOFF consensus_score=99.4 fisher_strand_p_value=0.583135 frequency=2.812e-01 ks_quality_p_value=0.987846 major_base=T major_cov=27/19 major_frequency=7.188e-01 minor_base=G minor_cov=9/9 new_cov=9/9 polymorphism_frequency=2.812e-01 polymorphism_score=51.0 prediction=polymorphism ref_cov=27/19 total_cov=37/30 RA 597 . NC_000913 377451 0 T . bias_e_value=4452180 bias_p_value=0.959181 consensus_reject=FREQUENCY_CUTOFF consensus_score=161.0 fisher_strand_p_value=0.782299 frequency=2.687e-01 ks_quality_p_value=0.930889 major_base=T major_cov=28/21 major_frequency=7.313e-01 minor_base=. minor_cov=9/9 new_cov=9/9 polymorphism_frequency=2.687e-01 polymorphism_score=70.7 prediction=polymorphism ref_cov=28/21 total_cov=37/30 RA 598 . NC_000913 377452 0 G A bias_e_value=4504680 bias_p_value=0.970491 consensus_reject=FREQUENCY_CUTOFF consensus_score=118.7 fisher_strand_p_value=0.784247 frequency=2.647e-01 ks_quality_p_value=0.978151 major_base=G major_cov=28/22 major_frequency=7.353e-01 minor_base=A minor_cov=9/9 new_cov=9/9 polymorphism_frequency=2.647e-01 polymorphism_score=42.0 prediction=polymorphism ref_cov=28/22 total_cov=37/31 RA 599 . NC_000913 377465 0 G T bias_e_value=4618850 bias_p_value=0.995088 consensus_reject=FREQUENCY_CUTOFF consensus_score=144.2 fisher_strand_p_value=1 frequency=2.097e-01 ks_quality_p_value=0.902536 major_base=G major_cov=28/21 major_frequency=7.903e-01 minor_base=T minor_cov=8/5 new_cov=8/5 polymorphism_frequency=2.097e-01 polymorphism_score=23.1 prediction=polymorphism ref_cov=28/21 total_cov=36/26 RA 600 . NC_000913 442025 0 C A bias_e_value=1.23201 bias_p_value=2.65425e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=184.1 fisher_strand_p_value=1.3903e-08 frequency=2.685e-01 ks_quality_p_value=1 major_base=C major_cov=35/44 major_frequency=7.315e-01 minor_base=A minor_cov=29/0 new_cov=29/0 polymorphism_frequency=2.685e-01 polymorphism_score=15.1 prediction=polymorphism ref_cov=35/44 total_cov=64/44 RA 601 . NC_000913 480295 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=393.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=52/60 major_frequency=9.912e-01 minor_base=G minor_cov=0/1 new_cov=52/60 polymorphism_frequency=9.912e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=52/61 RA 602 . NC_000913 480296 0 G A consensus_score=386.5 frequency=1 major_base=A major_cov=52/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/61 RA 603 . NC_000913 662269 0 C T bias_e_value=4641590 bias_p_value=0.999987 consensus_score=265.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99482 major_base=T major_cov=30/48 major_frequency=9.873e-01 minor_base=C minor_cov=0/1 new_cov=30/48 polymorphism_frequency=9.873e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=30/49 RA 604 . NC_000913 696470 0 C T bias_e_value=4002320 bias_p_value=0.862261 consensus_score=276.1 fisher_strand_p_value=0.523411 frequency=1 ks_quality_p_value=1 major_base=T major_cov=35/55 major_frequency=9.783e-01 minor_base=G minor_cov=0/2 new_cov=35/55 polymorphism_frequency=9.783e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/57 RA 605 . NC_000913 710830 0 G T bias_e_value=235.87 bias_p_value=5.0816e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=138.4 fisher_strand_p_value=3.76716e-06 frequency=3.407e-01 ks_quality_p_value=1 major_base=G major_cov=30/30 major_frequency=6.593e-01 minor_base=T minor_cov=1/30 new_cov=1/30 polymorphism_frequency=3.407e-01 polymorphism_score=18.7 prediction=polymorphism ref_cov=30/30 total_cov=31/60 RA 606 . NC_000913 782194 0 T G bias_e_value=6.11252 bias_p_value=1.31688e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=140.5 fisher_strand_p_value=7.56982e-08 frequency=2.842e-01 ks_quality_p_value=1 major_base=T major_cov=37/31 major_frequency=7.158e-01 minor_base=G minor_cov=0/27 new_cov=0/27 polymorphism_frequency=2.842e-01 polymorphism_score=12.0 prediction=polymorphism ref_cov=37/31 total_cov=38/59 RA 607 . NC_000913 847955 0 G A bias_e_value=0.000154449 bias_p_value=3.32746e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=224.1 fisher_strand_p_value=1.16854e-12 frequency=2.406e-01 ks_quality_p_value=1 major_base=G major_cov=67/34 major_frequency=7.594e-01 minor_base=A minor_cov=0/32 new_cov=0/32 polymorphism_frequency=2.406e-01 polymorphism_score=39.6 prediction=polymorphism ref_cov=67/34 total_cov=67/67 RA 608 . NC_000913 964392 0 G T bias_e_value=266.636 bias_p_value=5.74441e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=216.5 fisher_strand_p_value=4.30077e-06 frequency=2.286e-01 ks_quality_p_value=1 major_base=G major_cov=39/42 major_frequency=7.714e-01 minor_base=T minor_cov=0/24 new_cov=0/24 polymorphism_frequency=2.286e-01 polymorphism_score=11.8 prediction=polymorphism ref_cov=39/42 total_cov=39/66 RA 609 . NC_000913 968837 0 G A consensus_score=214.2 frequency=1 major_base=A major_cov=37/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/30 RA 610 . NC_000913 1040126 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=268.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=37/42 major_frequency=9.875e-01 minor_base=G minor_cov=0/1 new_cov=37/42 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=37/43 RA 611 . NC_000913 1061935 0 G A consensus_score=210.6 frequency=1 major_base=A major_cov=46/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/21 RA 612 . NC_000913 1069743 0 C T consensus_score=222.2 frequency=1 major_base=T major_cov=30/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/36 RA 613 . NC_000913 1097118 0 C A bias_e_value=1844260 bias_p_value=0.397328 consensus_reject=FREQUENCY_CUTOFF consensus_score=23.8 fisher_strand_p_value=0.138765 frequency=3.673e-01 ks_quality_p_value=0.944266 major_base=C major_cov=10/21 major_frequency=6.327e-01 minor_base=A minor_cov=10/8 new_cov=10/8 polymorphism_frequency=3.673e-01 polymorphism_score=42.0 prediction=polymorphism ref_cov=10/21 total_cov=20/29 RA 614 . NC_000913 1097158 0 C T bias_e_value=729041 bias_p_value=0.157065 consensus_reject=FREQUENCY_CUTOFF consensus_score=31.6 fisher_strand_p_value=0.129159 frequency=2.571e-01 ks_quality_p_value=0.281976 major_base=C major_cov=9/17 major_frequency=7.429e-01 minor_base=T minor_cov=6/3 new_cov=6/3 polymorphism_frequency=2.571e-01 polymorphism_score=19.9 prediction=polymorphism ref_cov=9/17 total_cov=15/20 RA 615 . NC_000913 1098620 0 T A bias_e_value=3826570 bias_p_value=0.824398 consensus_score=339.5 fisher_strand_p_value=0.469388 frequency=1 ks_quality_p_value=1 major_base=A major_cov=45/52 major_frequency=9.898e-01 minor_base=C minor_cov=1/0 new_cov=45/52 polymorphism_frequency=9.898e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/52 RA 616 . NC_000913 1109632 0 G A bias_e_value=2.86309e-05 bias_p_value=6.16825e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=237.1 fisher_strand_p_value=2.04111e-13 frequency=2.195e-01 ks_quality_p_value=1 major_base=G major_cov=72/24 major_frequency=7.805e-01 minor_base=A minor_cov=0/27 new_cov=0/27 polymorphism_frequency=2.195e-01 polymorphism_score=25.5 prediction=polymorphism ref_cov=72/24 total_cov=72/51 RA 617 . NC_000913 1111727 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=281.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=44/42 major_frequency=9.885e-01 minor_base=G minor_cov=1/0 new_cov=44/42 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/42 RA 618 . NC_000913 1111728 0 C T consensus_score=299.6 frequency=1 major_base=T major_cov=45/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/42 RA 619 . NC_000913 1169836 0 A G consensus_score=253.5 frequency=1 major_base=G major_cov=22/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/49 RA 620 . NC_000913 1189980 0 A G consensus_score=244.3 frequency=1 major_base=G major_cov=35/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/33 RA 621 . NC_000913 1196220 0 C T consensus_score=98.9 frequency=1 major_base=T major_cov=18/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/17 RA 622 . NC_000913 1196232 0 C T consensus_score=89.4 frequency=1 major_base=T major_cov=17/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=17/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/15 RA 623 . NC_000913 1196245 0 T C consensus_score=80.5 frequency=1 major_base=C major_cov=16/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/12 RA 624 . NC_000913 1196247 0 A G consensus_score=79.7 frequency=1 major_base=G major_cov=16/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/12 RA 625 . NC_000913 1196277 0 C T consensus_score=57.8 deleted=1 frequency=1 major_base=T major_cov=12/11 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/11 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/11 RA 626 . NC_000913 1196280 0 G C consensus_score=54.2 deleted=1 frequency=1 major_base=C major_cov=12/11 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/11 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/11 RA 627 . NC_000913 1196283 0 A G consensus_score=61.6 deleted=1 frequency=1 major_base=G major_cov=12/11 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/11 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/11 RA 628 . NC_000913 1196292 0 C T consensus_score=50.9 deleted=1 frequency=1 major_base=T major_cov=12/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/9 RA 629 . NC_000913 1196304 0 G A consensus_score=44.7 deleted=1 frequency=1 major_base=A major_cov=12/8 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/8 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/8 RA 630 . NC_000913 1196316 0 T A consensus_score=41.1 deleted=1 frequency=1 major_base=A major_cov=12/6 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/6 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/6 RA 631 . NC_000913 1196325 0 A G consensus_score=22.2 deleted=1 frequency=1 major_base=G major_cov=8/4 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=8/4 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=8/4 RA 632 . NC_000913 1196352 0 C A consensus_score=21.5 deleted=1 frequency=1 major_base=A major_cov=8/4 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=8/4 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=8/4 RA 633 . NC_000913 1286870 0 C A bias_e_value=2158750 bias_p_value=0.465082 consensus_reject=FREQUENCY_CUTOFF consensus_score=88.8 fisher_strand_p_value=0.232924 frequency=2.679e-01 ks_quality_p_value=0.715035 major_base=C major_cov=19/22 major_frequency=7.321e-01 minor_base=A minor_cov=10/5 new_cov=10/5 polymorphism_frequency=2.679e-01 polymorphism_score=25.6 prediction=polymorphism ref_cov=19/22 total_cov=29/27 RA 634 . NC_000913 1286874 0 G A bias_e_value=2192810 bias_p_value=0.472421 consensus_reject=FREQUENCY_CUTOFF consensus_score=75.4 fisher_strand_p_value=0.170671 frequency=3.571e-01 ks_quality_p_value=1 major_base=G major_cov=16/20 major_frequency=6.429e-01 minor_base=A minor_cov=13/7 new_cov=13/7 polymorphism_frequency=3.571e-01 polymorphism_score=24.9 prediction=polymorphism ref_cov=16/20 total_cov=29/27 RA 635 . NC_000913 1301992 0 A T consensus_score=318.1 frequency=1 major_base=T major_cov=42/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/56 RA 636 . NC_000913 1302454 0 A . bias_e_value=4300590 bias_p_value=0.926522 consensus_score=304.4 fisher_strand_p_value=0.642019 frequency=1 ks_quality_p_value=1 major_base=. major_cov=28/38 major_frequency=9.296e-01 minor_base=A minor_cov=1/4 new_cov=28/38 polymorphism_frequency=9.296e-01 polymorphism_score=17.9 prediction=consensus ref_cov=1/4 total_cov=29/42 RA 637 . NC_000913 1306736 0 T G consensus_score=282.4 frequency=1 major_base=G major_cov=55/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/27 RA 638 . NC_000913 1310770 0 A G bias_e_value=3565160 bias_p_value=0.768079 consensus_score=423.4 fisher_strand_p_value=0.401709 frequency=1 ks_quality_p_value=1 major_base=G major_cov=70/46 major_frequency=9.915e-01 minor_base=T minor_cov=0/1 new_cov=70/46 polymorphism_frequency=9.915e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=70/47 RA 639 . NC_000913 1334966 0 A C bias_e_value=0.0211048 bias_p_value=4.54682e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=265.6 fisher_strand_p_value=1.94643e-10 frequency=2.357e-01 ks_quality_p_value=1 major_base=A major_cov=57/63 major_frequency=7.643e-01 minor_base=C minor_cov=37/0 new_cov=37/0 polymorphism_frequency=2.357e-01 polymorphism_score=16.6 prediction=polymorphism ref_cov=57/63 total_cov=94/63 RA 640 . NC_000913 1337394 0 A G consensus_score=198.3 frequency=1 major_base=G major_cov=32/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/26 RA 641 . NC_000913 1343290 1 . A bias_e_value=2847470 bias_p_value=0.613461 consensus_score=276.5 fisher_strand_p_value=0.2624 frequency=1 ks_quality_p_value=1 major_base=A major_cov=52/29 major_frequency=9.000e-01 minor_base=. minor_cov=8/1 new_cov=52/29 polymorphism_frequency=9.000e-01 polymorphism_score=28.4 prediction=consensus ref_cov=8/1 total_cov=60/30 RA 642 . NC_000913 1343290 2 . G bias_e_value=2831400 bias_p_value=0.609998 consensus_score=284.4 fisher_strand_p_value=0.2624 frequency=1 ks_quality_p_value=0.990172 major_base=G major_cov=52/29 major_frequency=9.000e-01 minor_base=. minor_cov=8/1 new_cov=52/29 polymorphism_frequency=9.000e-01 polymorphism_score=26.3 prediction=consensus ref_cov=8/1 total_cov=60/30 RA 643 . NC_000913 1357202 0 C T consensus_score=305.8 frequency=1 major_base=T major_cov=49/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/39 RA 644 . NC_000913 1358859 0 T C consensus_score=297.1 frequency=1 major_base=C major_cov=36/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/46 RA 645 . NC_000913 1372018 0 C A bias_e_value=5.01534 bias_p_value=1.08051e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=182.8 fisher_strand_p_value=6.13703e-08 frequency=2.360e-01 ks_quality_p_value=1 major_base=C major_cov=25/43 major_frequency=7.640e-01 minor_base=A minor_cov=21/0 new_cov=21/0 polymorphism_frequency=2.360e-01 polymorphism_score=10.8 prediction=polymorphism ref_cov=25/43 total_cov=46/43 RA 646 . NC_000913 1390607 0 C A bias_e_value=5.18055 bias_p_value=1.1161e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=166.8 fisher_strand_p_value=6.3516e-08 frequency=3.048e-01 ks_quality_p_value=1 major_base=C major_cov=37/36 major_frequency=6.952e-01 minor_base=A minor_cov=32/0 new_cov=32/0 polymorphism_frequency=3.048e-01 polymorphism_score=15.3 prediction=polymorphism ref_cov=37/36 total_cov=69/36 RA 647 . NC_000913 1428052 0 T C bias_e_value=2177000 bias_p_value=0.469013 consensus_score=201.0 fisher_strand_p_value=0.16875 frequency=1 ks_quality_p_value=1 major_base=C major_cov=25/38 major_frequency=9.692e-01 minor_base=A minor_cov=2/0 new_cov=25/38 polymorphism_frequency=9.692e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/38 RA 648 . NC_000913 1428097 0 A C consensus_score=148.5 frequency=1 major_base=C major_cov=17/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=17/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/29 RA 649 . NC_000913 1428370 0 A G consensus_score=33.7 deleted=1 frequency=1 major_base=G major_cov=12/6 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/6 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/6 RA 650 . NC_000913 1428391 0 G C consensus_score=44.5 deleted=1 frequency=1 major_base=C major_cov=15/6 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/6 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/6 RA 651 . NC_000913 1428424 0 A G consensus_score=46.7 deleted=1 frequency=1 major_base=G major_cov=14/7 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=14/7 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/7 RA 652 . NC_000913 1428432 0 G A consensus_score=43.7 deleted=1 frequency=1 major_base=A major_cov=15/7 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/7 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/7 RA 653 . NC_000913 1428451 0 T C consensus_score=74.8 frequency=1 major_base=C major_cov=18/11 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/11 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/11 RA 654 . NC_000913 1428463 0 G A bias_e_value=3467380 bias_p_value=0.747014 consensus_score=65.7 fisher_strand_p_value=0.37931 frequency=1 ks_quality_p_value=1 major_base=A major_cov=18/10 major_frequency=9.655e-01 minor_base=G minor_cov=0/1 new_cov=18/10 polymorphism_frequency=9.655e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=18/11 RA 655 . NC_000913 1428487 0 G A consensus_score=73.6 frequency=1 major_base=A major_cov=19/11 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/11 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/11 RA 656 . NC_000913 1428765 0 T C bias_e_value=254.202 bias_p_value=5.47653e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=139.2 fisher_strand_p_value=4.08443e-06 frequency=2.237e-01 ks_quality_p_value=1 major_base=T major_cov=35/24 major_frequency=7.763e-01 minor_base=C minor_cov=0/17 new_cov=0/17 polymorphism_frequency=2.237e-01 polymorphism_score=13.1 prediction=polymorphism ref_cov=35/24 total_cov=35/41 RA 657 . NC_000913 1434642 0 G A bias_e_value=3872910 bias_p_value=0.834381 consensus_reject=FREQUENCY_CUTOFF consensus_score=313.5 fisher_strand_p_value=0.862603 frequency=2.571e-01 ks_quality_p_value=0.559748 major_base=G major_cov=70/60 major_frequency=7.429e-01 minor_base=A minor_cov=23/22 new_cov=23/22 polymorphism_frequency=2.571e-01 polymorphism_score=119.8 prediction=polymorphism ref_cov=70/60 total_cov=93/82 RA 658 . NC_000913 1502770 0 T C bias_e_value=2.72648 bias_p_value=5.87394e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=175.9 fisher_strand_p_value=3.21827e-08 frequency=2.455e-01 ks_quality_p_value=1 major_base=T major_cov=46/37 major_frequency=7.545e-01 minor_base=C minor_cov=0/27 new_cov=0/27 polymorphism_frequency=2.455e-01 polymorphism_score=26.8 prediction=polymorphism ref_cov=46/37 total_cov=46/65 RA 659 . NC_000913 1502772 0 G A bias_e_value=2.72648 bias_p_value=5.87394e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=170.9 fisher_strand_p_value=3.21827e-08 frequency=2.455e-01 ks_quality_p_value=1 major_base=G major_cov=46/37 major_frequency=7.545e-01 minor_base=A minor_cov=0/27 new_cov=0/27 polymorphism_frequency=2.455e-01 polymorphism_score=23.4 prediction=polymorphism ref_cov=46/37 total_cov=46/64 RA 660 . NC_000913 1600234 0 C T consensus_score=353.2 frequency=1 major_base=T major_cov=62/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/40 RA 661 . NC_000913 1601098 0 C A bias_e_value=3936630 bias_p_value=0.848109 consensus_score=341.2 fisher_strand_p_value=0.502222 frequency=1 ks_quality_p_value=1 major_base=A major_cov=54/44 major_frequency=9.800e-01 minor_base=C minor_cov=2/0 new_cov=54/44 polymorphism_frequency=9.800e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=56/44 RA 662 . NC_000913 1601103 0 C T consensus_score=334.1 frequency=1 major_base=T major_cov=55/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/44 RA 663 . NC_000913 1632712 0 A G consensus_score=89.6 frequency=1 major_base=G major_cov=16/16 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/16 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/16 RA 664 . NC_000913 1632735 0 G A consensus_score=81.2 frequency=1 major_base=A major_cov=16/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/14 RA 665 . NC_000913 1632770 0 T C consensus_score=71.1 frequency=1 major_base=C major_cov=15/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/12 RA 666 . NC_000913 1641002 0 T C consensus_score=488.9 frequency=1 major_base=C major_cov=70/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=70/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=70/63 RA 667 . NC_000913 1643679 0 A T consensus_score=175.2 frequency=1 major_base=T major_cov=28/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/22 RA 668 . NC_000913 1649971 0 C T consensus_score=325.7 frequency=1 major_base=T major_cov=50/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/44 RA 669 . NC_000913 1652331 0 T C bias_e_value=3917960 bias_p_value=0.844088 consensus_score=381.0 fisher_strand_p_value=0.496432 frequency=1 ks_quality_p_value=1 major_base=C major_cov=55/52 major_frequency=9.817e-01 minor_base=A minor_cov=2/0 new_cov=55/52 polymorphism_frequency=9.817e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/52 RA 670 . NC_000913 1687338 0 G T bias_e_value=41.0012 bias_p_value=8.83331e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=154.8 fisher_strand_p_value=5.74735e-07 frequency=2.500e-01 ks_quality_p_value=1 major_base=G major_cov=41/19 major_frequency=7.500e-01 minor_base=T minor_cov=1/19 new_cov=1/19 polymorphism_frequency=2.500e-01 polymorphism_score=15.1 prediction=polymorphism ref_cov=41/19 total_cov=42/38 RA 671 . NC_000913 1688938 0 C T consensus_score=314.2 frequency=1 major_base=T major_cov=48/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/43 RA 672 . NC_000913 1702757 0 C T consensus_score=186.8 frequency=1 major_base=T major_cov=24/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/33 RA 673 . NC_000913 1729510 0 A G consensus_score=210.8 frequency=1 major_base=G major_cov=27/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/35 RA 674 . NC_000913 1764640 0 G A bias_e_value=3864610 bias_p_value=0.832593 consensus_score=360.3 fisher_strand_p_value=0.480392 frequency=1 ks_quality_p_value=1 major_base=A major_cov=48/53 major_frequency=9.902e-01 minor_base=C minor_cov=1/0 new_cov=48/53 polymorphism_frequency=9.902e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/53 RA 675 . NC_000913 1793377 0 T . consensus_score=275.7 frequency=1 major_base=. major_cov=31/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/26 RA 676 . NC_000913 1812509 0 G T bias_e_value=0.00112848 bias_p_value=2.43121e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=196.9 fisher_strand_p_value=9.20519e-12 frequency=3.119e-01 ks_quality_p_value=1 major_base=G major_cov=52/23 major_frequency=6.881e-01 minor_base=T minor_cov=1/33 new_cov=1/33 polymorphism_frequency=3.119e-01 polymorphism_score=22.6 prediction=polymorphism ref_cov=52/23 total_cov=53/56 RA 677 . NC_000913 1861827 0 C T bias_e_value=3910560 bias_p_value=0.842492 consensus_score=312.1 fisher_strand_p_value=0.494624 frequency=1 ks_quality_p_value=0.999065 major_base=T major_cov=47/45 major_frequency=9.892e-01 minor_base=G minor_cov=0/1 new_cov=47/45 polymorphism_frequency=9.892e-01 polymorphism_score=-7.0 prediction=consensus ref_cov=0/0 total_cov=47/46 RA 678 . NC_000913 1874202 0 G A bias_e_value=3413470 bias_p_value=0.735401 consensus_score=383.3 fisher_strand_p_value=0.367521 frequency=1 ks_quality_p_value=1 major_base=A major_cov=74/42 major_frequency=9.915e-01 minor_base=C minor_cov=0/1 new_cov=74/42 polymorphism_frequency=9.915e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=74/43 RA 679 . NC_000913 1894839 0 T C consensus_score=309.2 frequency=1 major_base=C major_cov=43/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/43 RA 680 . NC_000913 1911929 0 C T consensus_score=206.1 frequency=1 major_base=T major_cov=30/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/34 RA 681 . NC_000913 1911930 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=186.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=30/33 major_frequency=9.844e-01 minor_base=G minor_cov=0/1 new_cov=30/33 polymorphism_frequency=9.844e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/34 RA 682 . NC_000913 1922815 0 C A bias_e_value=8249.66 bias_p_value=0.00177731 consensus_reject=FREQUENCY_CUTOFF consensus_score=167.3 fisher_strand_p_value=0.000185257 frequency=2.574e-01 ks_quality_p_value=1 major_base=C major_cov=31/44 major_frequency=7.426e-01 minor_base=A minor_cov=22/4 new_cov=22/4 polymorphism_frequency=2.574e-01 polymorphism_score=11.1 prediction=polymorphism ref_cov=31/44 total_cov=53/48 RA 683 . NC_000913 2040433 0 C A consensus_score=229.8 frequency=1 major_base=A major_cov=30/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/40 RA 684 . NC_000913 2099484 0 G T bias_e_value=0.580992 bias_p_value=1.25169e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=228.9 fisher_strand_p_value=6.29514e-09 frequency=2.437e-01 ks_quality_p_value=1 major_base=G major_cov=51/39 major_frequency=7.563e-01 minor_base=T minor_cov=0/29 new_cov=0/29 polymorphism_frequency=2.437e-01 polymorphism_score=11.2 prediction=polymorphism ref_cov=51/39 total_cov=51/68 RA 685 . NC_000913 2142163 0 G A consensus_score=210.4 frequency=1 major_base=A major_cov=45/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/18 RA 686 . NC_000913 2146017 0 C T consensus_score=308.8 frequency=1 major_base=T major_cov=41/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/49 RA 687 . NC_000913 2155880 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=159.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=18/32 major_frequency=9.804e-01 minor_base=G minor_cov=0/1 new_cov=18/32 polymorphism_frequency=9.804e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/33 RA 688 . NC_000913 2171384 0 A C bias_e_value=4503640 bias_p_value=0.970266 consensus_reject=FREQUENCY_CUTOFF consensus_score=151.9 fisher_strand_p_value=0.772333 frequency=2.090e-01 ks_quality_p_value=0.992146 major_base=A major_cov=29/24 major_frequency=7.910e-01 minor_base=C minor_cov=7/7 new_cov=7/7 polymorphism_frequency=2.090e-01 polymorphism_score=36.2 prediction=polymorphism ref_cov=29/24 total_cov=36/31 RA 689 . NC_000913 2173363 0 C . consensus_score=356.1 frequency=1 major_base=. major_cov=42/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/34 RA 690 . NC_000913 2173364 0 C . consensus_score=356.1 frequency=1 major_base=. major_cov=42/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/34 RA 691 . NC_000913 2173448 0 C T bias_e_value=3889570 bias_p_value=0.837971 consensus_score=258.4 fisher_strand_p_value=0.487805 frequency=1 ks_quality_p_value=1 major_base=T major_cov=42/39 major_frequency=9.878e-01 minor_base=G minor_cov=0/1 new_cov=42/39 polymorphism_frequency=9.878e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/40 RA 692 . NC_000913 2177670 0 G A consensus_score=215.8 frequency=1 major_base=A major_cov=44/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/23 RA 693 . NC_000913 2219948 0 C T consensus_score=276.4 frequency=1 major_base=T major_cov=29/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/53 RA 694 . NC_000913 2224169 0 A G consensus_score=282.8 frequency=1 major_base=G major_cov=32/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/48 RA 695 . NC_000913 2237105 0 G T consensus_score=306.3 frequency=1 major_base=T major_cov=45/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/40 RA 696 . NC_000913 2244442 0 C A bias_e_value=38.412 bias_p_value=8.27551e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=146.0 fisher_strand_p_value=5.36009e-07 frequency=2.400e-01 ks_quality_p_value=1 major_base=C major_cov=20/37 major_frequency=7.600e-01 minor_base=A minor_cov=18/0 new_cov=18/0 polymorphism_frequency=2.400e-01 polymorphism_score=12.7 prediction=polymorphism ref_cov=20/37 total_cov=38/37 RA 697 . NC_000913 2264460 0 G A consensus_score=251.2 frequency=1 major_base=A major_cov=40/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/35 RA 698 . NC_000913 2264461 0 A T consensus_score=256.9 frequency=1 major_base=T major_cov=40/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/35 RA 699 . NC_000913 2288418 0 G T bias_e_value=0.0351162 bias_p_value=7.56544e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=252.1 fisher_strand_p_value=3.31416e-10 frequency=2.269e-01 ks_quality_p_value=1 major_base=G major_cov=59/33 major_frequency=7.731e-01 minor_base=T minor_cov=0/27 new_cov=0/27 polymorphism_frequency=2.269e-01 polymorphism_score=16.7 prediction=polymorphism ref_cov=59/33 total_cov=59/60 RA 700 . NC_000913 2319078 0 C A consensus_score=292.8 frequency=1 major_base=A major_cov=44/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/40 RA 701 . NC_000913 2338564 0 A G bias_e_value=3839090 bias_p_value=0.827096 consensus_score=252.5 fisher_strand_p_value=0.472973 frequency=1 ks_quality_p_value=1 major_base=G major_cov=39/34 major_frequency=9.865e-01 minor_base=T minor_cov=0/1 new_cov=39/34 polymorphism_frequency=9.865e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/35 RA 702 . NC_000913 2360550 0 C . bias_e_value=3872900 bias_p_value=0.83438 consensus_score=375.6 fisher_strand_p_value=0.493827 frequency=1 ks_quality_p_value=0.977748 major_base=. major_cov=40/39 major_frequency=9.753e-01 minor_base=T minor_cov=0/2 new_cov=40/39 polymorphism_frequency=9.753e-01 polymorphism_score=2.7 prediction=consensus ref_cov=0/0 total_cov=40/41 RA 703 . NC_000913 2392233 0 C G bias_e_value=4641650 bias_p_value=1 consensus_score=293.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=42/39 major_frequency=9.878e-01 minor_base=C minor_cov=1/0 new_cov=42/39 polymorphism_frequency=9.878e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=1/0 total_cov=43/39 RA 704 . NC_000913 2423891 0 C T consensus_score=223.6 frequency=1 major_base=T major_cov=17/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=17/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/51 RA 705 . NC_000913 2443447 0 G A consensus_score=238.5 frequency=1 major_base=A major_cov=36/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/35 RA 706 . NC_000913 2471806 0 G A consensus_score=320.2 frequency=1 major_base=A major_cov=35/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/54 RA 707 . NC_000913 2473392 0 G A bias_e_value=3925420 bias_p_value=0.845695 consensus_score=261.6 fisher_strand_p_value=0.498734 frequency=1 ks_quality_p_value=1 major_base=A major_cov=42/36 major_frequency=9.750e-01 minor_base=C minor_cov=2/0 new_cov=42/36 polymorphism_frequency=9.750e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/36 RA 708 . NC_000913 2473397 1 . T bias_e_value=3306730 bias_p_value=0.712403 consensus_score=223.0 fisher_strand_p_value=0.345235 frequency=1 ks_quality_p_value=1 major_base=T major_cov=38/33 major_frequency=9.467e-01 minor_base=. minor_cov=1/3 new_cov=38/33 polymorphism_frequency=9.467e-01 polymorphism_score=6.8 prediction=consensus ref_cov=1/3 total_cov=39/36 RA 709 . NC_000913 2485434 0 C T consensus_score=324.4 frequency=1 major_base=T major_cov=43/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/50 RA 710 . NC_000913 2510609 0 C T consensus_score=312.2 frequency=1 major_base=T major_cov=39/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/53 RA 711 . NC_000913 2577911 0 A . consensus_score=395.3 frequency=1 major_base=. major_cov=52/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/32 RA 712 . NC_000913 2587112 0 C T consensus_score=232.6 frequency=1 major_base=T major_cov=45/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/21 RA 713 . NC_000913 2630852 0 G A consensus_score=344.4 frequency=1 major_base=A major_cov=48/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/58 RA 714 . NC_000913 2710736 0 C T consensus_score=248.3 frequency=1 major_base=T major_cov=37/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/33 RA 715 . NC_000913 2722838 0 G T bias_e_value=0.0232944 bias_p_value=5.01855e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=159.0 fisher_strand_p_value=2.15789e-10 frequency=3.204e-01 ks_quality_p_value=1 major_base=G major_cov=42/28 major_frequency=6.796e-01 minor_base=T minor_cov=0/33 new_cov=0/33 polymorphism_frequency=3.204e-01 polymorphism_score=12.5 prediction=polymorphism ref_cov=42/28 total_cov=42/61 RA 716 . NC_000913 2731957 0 C T bias_e_value=3758020 bias_p_value=0.809629 consensus_score=220.3 fisher_strand_p_value=0.470588 frequency=1 ks_quality_p_value=0.957051 major_base=T major_cov=36/31 major_frequency=9.853e-01 minor_base=. minor_cov=0/1 new_cov=36/31 polymorphism_frequency=9.853e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=0/0 total_cov=36/32 RA 717 . NC_000913 2732992 0 G A bias_e_value=3877530 bias_p_value=0.835377 consensus_score=322.0 fisher_strand_p_value=0.484211 frequency=1 ks_quality_p_value=1 major_base=A major_cov=49/45 major_frequency=9.895e-01 minor_base=G minor_cov=0/1 new_cov=49/45 polymorphism_frequency=9.895e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=49/46 RA 718 . NC_000913 2764599 0 G A bias_e_value=3709380 bias_p_value=0.79915 consensus_score=420.7 fisher_strand_p_value=0.438017 frequency=1 ks_quality_p_value=0.998761 major_base=A major_cov=68/52 major_frequency=9.917e-01 minor_base=G minor_cov=0/1 new_cov=68/52 polymorphism_frequency=9.917e-01 polymorphism_score=-6.2 prediction=consensus ref_cov=0/1 total_cov=68/53 RA 719 . NC_000913 2788391 0 C T bias_e_value=3635850 bias_p_value=0.78331 consensus_score=390.8 fisher_strand_p_value=0.418803 frequency=1 ks_quality_p_value=1 major_base=T major_cov=68/48 major_frequency=9.915e-01 minor_base=C minor_cov=0/1 new_cov=68/48 polymorphism_frequency=9.915e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=68/49 RA 720 . NC_000913 2800969 0 G A consensus_score=291.1 frequency=1 major_base=A major_cov=29/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/53 RA 721 . NC_000913 2804133 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=340.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=44/55 major_frequency=9.900e-01 minor_base=G minor_cov=0/1 new_cov=44/55 polymorphism_frequency=9.900e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/56 RA 722 . NC_000913 2814459 0 A . bias_e_value=3588670 bias_p_value=0.773145 consensus_score=408.3 fisher_strand_p_value=0.418605 frequency=1 ks_quality_p_value=0.973011 major_base=. major_cov=35/50 major_frequency=9.884e-01 minor_base=A minor_cov=1/0 new_cov=35/50 polymorphism_frequency=9.884e-01 polymorphism_score=-1.9 prediction=consensus ref_cov=1/0 total_cov=36/50 RA 723 . NC_000913 2814461 0 C T consensus_score=278.1 frequency=1 major_base=T major_cov=36/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/50 RA 724 . NC_000913 2817991 0 A C bias_e_value=1235170 bias_p_value=0.266106 consensus_reject=FREQUENCY_CUTOFF consensus_score=106.5 fisher_strand_p_value=0.0737822 frequency=2.295e-01 ks_quality_p_value=1 major_base=A major_cov=17/30 major_frequency=7.705e-01 minor_base=C minor_cov=9/5 new_cov=9/5 polymorphism_frequency=2.295e-01 polymorphism_score=17.1 prediction=polymorphism ref_cov=17/30 total_cov=26/35 RA 725 . NC_000913 2867455 0 G A consensus_score=401.6 frequency=1 major_base=A major_cov=71/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=71/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=71/46 RA 726 . NC_000913 2880635 0 T C consensus_score=285.9 frequency=1 major_base=C major_cov=39/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/45 RA 727 . NC_000913 2881212 0 C T consensus_score=341.6 frequency=1 major_base=T major_cov=51/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/48 RA 728 . NC_000913 2883115 0 G A bias_e_value=3917670 bias_p_value=0.844026 consensus_score=452.5 fisher_strand_p_value=0.498995 frequency=1 ks_quality_p_value=0.994686 major_base=A major_cov=72/64 major_frequency=9.855e-01 minor_base=G minor_cov=2/0 new_cov=72/64 polymorphism_frequency=9.855e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=2/0 total_cov=74/64 RA 729 . NC_000913 2886731 0 T C bias_e_value=3837540 bias_p_value=0.826762 consensus_score=304.3 fisher_strand_p_value=0.472527 frequency=1 ks_quality_p_value=1 major_base=C major_cov=42/48 major_frequency=9.890e-01 minor_base=A minor_cov=1/0 new_cov=42/48 polymorphism_frequency=9.890e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/48 RA 730 . NC_000913 2890626 0 G A consensus_score=183.8 frequency=1 major_base=A major_cov=33/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/26 RA 731 . NC_000913 2893219 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=338.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=48/52 major_frequency=9.901e-01 minor_base=G minor_cov=0/1 new_cov=48/52 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/53 RA 732 . NC_000913 2893647 0 C T consensus_score=230.8 frequency=1 major_base=T major_cov=31/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/39 RA 733 . NC_000913 2894839 0 C T consensus_score=260.9 frequency=1 major_base=T major_cov=40/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/36 RA 734 . NC_000913 2916216 0 G A consensus_score=384.9 frequency=1 major_base=A major_cov=59/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/61 RA 735 . NC_000913 2926772 0 C A consensus_score=309.5 frequency=1 major_base=A major_cov=45/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/44 RA 736 . NC_000913 2990480 0 C A bias_e_value=0.00012945 bias_p_value=2.78887e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=205.5 fisher_strand_p_value=9.73147e-13 frequency=3.308e-01 ks_quality_p_value=1 major_base=C major_cov=36/51 major_frequency=6.692e-01 minor_base=A minor_cov=43/0 new_cov=43/0 polymorphism_frequency=3.308e-01 polymorphism_score=15.6 prediction=polymorphism ref_cov=36/51 total_cov=79/51 RA 737 . NC_000913 3024914 0 C A bias_e_value=0.0551888 bias_p_value=1.18899e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=192.9 fisher_strand_p_value=5.31877e-10 frequency=2.626e-01 ks_quality_p_value=1 major_base=C major_cov=25/48 major_frequency=7.374e-01 minor_base=A minor_cov=26/0 new_cov=26/0 polymorphism_frequency=2.626e-01 polymorphism_score=14.9 prediction=polymorphism ref_cov=25/48 total_cov=51/48 RA 738 . NC_000913 3032307 0 C T bias_e_value=0.00036278 bias_p_value=7.81575e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=145.6 fisher_strand_p_value=2.83285e-12 frequency=2.500e-01 ks_quality_p_value=1 major_base=C major_cov=9/51 major_frequency=7.500e-01 minor_base=T minor_cov=20/0 new_cov=20/0 polymorphism_frequency=2.500e-01 polymorphism_score=23.0 prediction=polymorphism ref_cov=9/51 total_cov=29/51 RA 739 . NC_000913 3050472 0 G A consensus_score=262.2 frequency=1 major_base=A major_cov=31/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/45 RA 740 . NC_000913 3054886 0 G T bias_e_value=38.17 bias_p_value=8.22336e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=100.4 fisher_strand_p_value=5.32399e-07 frequency=3.125e-01 ks_quality_p_value=1 major_base=G major_cov=25/30 major_frequency=6.875e-01 minor_base=T minor_cov=25/0 new_cov=25/0 polymorphism_frequency=3.125e-01 polymorphism_score=25.0 prediction=polymorphism ref_cov=25/30 total_cov=50/30 RA 741 . NC_000913 3054894 0 G T bias_e_value=309.822 bias_p_value=6.67482e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=87.3 fisher_strand_p_value=5.05883e-06 frequency=3.239e-01 ks_quality_p_value=1 major_base=G major_cov=19/29 major_frequency=6.761e-01 minor_base=T minor_cov=22/1 new_cov=22/1 polymorphism_frequency=3.239e-01 polymorphism_score=17.6 prediction=polymorphism ref_cov=19/29 total_cov=41/30 RA 742 . NC_000913 3061168 0 G A bias_e_value=3860930 bias_p_value=0.8318 consensus_score=240.9 fisher_strand_p_value=0.486111 frequency=1 ks_quality_p_value=0.986014 major_base=A major_cov=34/37 major_frequency=9.861e-01 minor_base=C minor_cov=1/0 new_cov=34/37 polymorphism_frequency=9.861e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/0 total_cov=35/37 RA 743 . NC_000913 3061916 0 C T consensus_score=229.5 frequency=1 major_base=T major_cov=39/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/30 RA 744 . NC_000913 3065449 0 G A consensus_score=262.6 frequency=1 major_base=A major_cov=47/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/30 RA 745 . NC_000913 3065861 0 G A bias_e_value=3185300 bias_p_value=0.686244 consensus_score=297.8 fisher_strand_p_value=0.321429 frequency=1 ks_quality_p_value=1 major_base=A major_cov=26/57 major_frequency=9.881e-01 minor_base=C minor_cov=1/0 new_cov=26/57 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/57 RA 746 . NC_000913 3089260 0 T C consensus_score=242.3 frequency=1 major_base=C major_cov=29/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/40 RA 747 . NC_000913 3090968 0 G A consensus_score=186.7 frequency=1 major_base=A major_cov=29/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/24 RA 748 . NC_000913 3104887 0 G A consensus_score=293.5 frequency=1 major_base=A major_cov=41/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/48 RA 749 . NC_000913 3120786 0 G A consensus_score=226.5 frequency=1 major_base=A major_cov=34/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/32 RA 750 . NC_000913 3121033 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=289.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=45/37 major_frequency=9.762e-01 minor_base=A minor_cov=1/1 new_cov=45/37 polymorphism_frequency=9.762e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/38 RA 751 . NC_000913 3127981 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=389.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=73/48 major_frequency=9.918e-01 minor_base=C minor_cov=1/0 new_cov=73/48 polymorphism_frequency=9.918e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=74/48 RA 752 . NC_000913 3130161 0 G A consensus_score=274.9 frequency=1 major_base=A major_cov=34/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/47 RA 753 . NC_000913 3132077 0 G A consensus_score=289.9 frequency=1 major_base=A major_cov=41/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/41 RA 754 . NC_000913 3133175 0 G A consensus_score=155.7 frequency=1 major_base=A major_cov=30/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/18 RA 755 . NC_000913 3134263 0 G A consensus_score=397.8 frequency=1 major_base=A major_cov=62/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/50 RA 756 . NC_000913 3145944 0 G A bias_e_value=3910410 bias_p_value=0.842462 consensus_score=293.2 fisher_strand_p_value=0.494118 frequency=1 ks_quality_p_value=1 major_base=A major_cov=43/41 major_frequency=9.882e-01 minor_base=. minor_cov=0/1 new_cov=43/41 polymorphism_frequency=9.882e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=0/0 total_cov=43/42 RA 757 . NC_000913 3150316 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=265.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=45/34 major_frequency=9.875e-01 minor_base=C minor_cov=1/0 new_cov=45/34 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=46/35 RA 758 . NC_000913 3162216 0 G A consensus_score=213.5 frequency=1 major_base=A major_cov=19/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/44 RA 759 . NC_000913 3176625 0 G A consensus_score=211.1 frequency=1 major_base=A major_cov=35/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/30 RA 760 . NC_000913 3179383 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=237.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99964 major_base=A major_cov=42/32 major_frequency=9.867e-01 minor_base=G minor_cov=1/0 new_cov=42/32 polymorphism_frequency=9.867e-01 polymorphism_score=-5.3 prediction=consensus ref_cov=1/0 total_cov=43/32 RA 761 . NC_000913 3181243 0 G T bias_e_value=0.0162386 bias_p_value=3.49846e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=185.2 fisher_strand_p_value=1.48029e-10 frequency=2.900e-01 ks_quality_p_value=1 major_base=G major_cov=46/25 major_frequency=7.100e-01 minor_base=T minor_cov=0/29 new_cov=0/29 polymorphism_frequency=2.900e-01 polymorphism_score=10.4 prediction=polymorphism ref_cov=46/25 total_cov=46/54 RA 762 . NC_000913 3186297 0 G A consensus_score=112.1 frequency=1 major_base=A major_cov=14/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=14/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/21 RA 763 . NC_000913 3193351 0 G A consensus_score=274.5 frequency=1 major_base=A major_cov=59/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/27 RA 764 . NC_000913 3204617 0 G A consensus_score=304.1 frequency=1 major_base=A major_cov=46/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/46 RA 765 . NC_000913 3207549 0 G . bias_e_value=4641540 bias_p_value=0.999976 consensus_score=400.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.993022 major_base=. major_cov=37/47 major_frequency=9.882e-01 minor_base=G minor_cov=0/1 new_cov=37/47 polymorphism_frequency=9.882e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=0/1 total_cov=37/48 RA 766 . NC_000913 3219128 0 G A consensus_score=391.4 frequency=1 major_base=A major_cov=96/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=96/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=96/27 RA 767 . NC_000913 3224895 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=293.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=47/40 major_frequency=9.886e-01 minor_base=C minor_cov=1/0 new_cov=47/40 polymorphism_frequency=9.886e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=48/40 RA 768 . NC_000913 3227339 0 C T consensus_score=236.6 frequency=1 major_base=T major_cov=30/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/41 RA 769 . NC_000913 3240423 0 C T bias_e_value=3852130 bias_p_value=0.829904 consensus_score=290.0 fisher_strand_p_value=0.476744 frequency=1 ks_quality_p_value=1 major_base=T major_cov=40/45 major_frequency=9.884e-01 minor_base=C minor_cov=1/0 new_cov=40/45 polymorphism_frequency=9.884e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=41/45 RA 770 . NC_000913 3240842 0 T C consensus_score=233.2 frequency=1 major_base=C major_cov=24/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/43 RA 771 . NC_000913 3256157 0 C T consensus_score=201.2 frequency=1 major_base=T major_cov=28/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/40 RA 772 . NC_000913 3270497 0 C T consensus_score=165.0 frequency=1 major_base=T major_cov=24/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/26 RA 773 . NC_000913 3275902 0 A T consensus_score=252.4 frequency=1 major_base=T major_cov=40/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/37 RA 774 . NC_000913 3292312 0 C T consensus_score=271.4 frequency=1 major_base=T major_cov=34/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/49 RA 775 . NC_000913 3336411 0 G A consensus_score=340.9 frequency=1 major_base=A major_cov=54/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/46 RA 776 . NC_000913 3336412 0 A T consensus_score=337.2 frequency=1 major_base=T major_cov=54/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/46 RA 777 . NC_000913 3388041 0 T G consensus_score=247.1 frequency=1 major_base=G major_cov=30/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/39 RA 778 . NC_000913 3401345 0 G T bias_e_value=300.177 bias_p_value=6.46704e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=151.3 fisher_strand_p_value=4.88868e-06 frequency=2.828e-01 ks_quality_p_value=1 major_base=G major_cov=31/40 major_frequency=7.172e-01 minor_base=T minor_cov=0/28 new_cov=0/28 polymorphism_frequency=2.828e-01 polymorphism_score=17.6 prediction=polymorphism ref_cov=31/40 total_cov=31/68 RA 779 . NC_000913 3410397 0 G T bias_e_value=65.848 bias_p_value=1.41863e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=166.2 fisher_strand_p_value=9.54535e-07 frequency=2.788e-01 ks_quality_p_value=1 major_base=G major_cov=35/40 major_frequency=7.212e-01 minor_base=T minor_cov=0/29 new_cov=0/29 polymorphism_frequency=2.788e-01 polymorphism_score=11.3 prediction=polymorphism ref_cov=35/40 total_cov=35/69 RA 780 . NC_000913 3431396 0 C A bias_e_value=381.449 bias_p_value=8.21796e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=181.1 fisher_strand_p_value=6.33653e-06 frequency=2.642e-01 ks_quality_p_value=1 major_base=C major_cov=45/33 major_frequency=7.358e-01 minor_base=A minor_cov=28/0 new_cov=28/0 polymorphism_frequency=2.642e-01 polymorphism_score=10.3 prediction=polymorphism ref_cov=45/33 total_cov=73/33 RA 781 . NC_000913 3436697 0 G A bias_e_value=4641530 bias_p_value=0.999974 consensus_score=232.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99279 major_base=A major_cov=25/41 major_frequency=9.851e-01 minor_base=G minor_cov=0/1 new_cov=25/41 polymorphism_frequency=9.851e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/1 total_cov=25/42 RA 782 . NC_000913 3452547 0 A G consensus_score=283.1 frequency=1 major_base=G major_cov=43/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/36 RA 783 . NC_000913 3474424 0 T G consensus_score=280.6 frequency=1 major_base=G major_cov=41/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/37 RA 784 . NC_000913 3560455 1 . G consensus_score=242.1 frequency=1 major_base=G major_cov=32/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/39 RA 785 . NC_000913 3622770 0 G A consensus_score=193.8 frequency=1 major_base=A major_cov=38/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/22 RA 786 . NC_000913 3635116 0 G A bias_e_value=3447870 bias_p_value=0.742811 consensus_score=267.9 fisher_strand_p_value=0.375 frequency=1 ks_quality_p_value=1 major_base=A major_cov=29/50 major_frequency=9.875e-01 minor_base=C minor_cov=1/0 new_cov=29/50 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/50 RA 787 . NC_000913 3698243 0 G A consensus_score=259.4 frequency=1 major_base=A major_cov=31/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/45 RA 788 . NC_000913 3707947 0 C A bias_e_value=4641640 bias_p_value=0.999997 consensus_score=375.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997645 major_base=A major_cov=70/46 major_frequency=9.915e-01 minor_base=C minor_cov=1/0 new_cov=70/46 polymorphism_frequency=9.915e-01 polymorphism_score=-6.5 prediction=consensus ref_cov=1/0 total_cov=71/46 RA 789 . NC_000913 3725176 0 T G consensus_score=251.6 frequency=1 major_base=G major_cov=30/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/40 RA 790 . NC_000913 3741871 0 G T bias_e_value=16.1077 bias_p_value=3.47025e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=155.4 fisher_strand_p_value=2.12033e-07 frequency=2.500e-01 ks_quality_p_value=1 major_base=G major_cov=39/24 major_frequency=7.500e-01 minor_base=T minor_cov=0/21 new_cov=0/21 polymorphism_frequency=2.500e-01 polymorphism_score=12.4 prediction=polymorphism ref_cov=39/24 total_cov=39/46 RA 791 . NC_000913 3785125 0 G A consensus_score=359.0 frequency=1 major_base=A major_cov=60/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/45 RA 792 . NC_000913 3785142 0 T C consensus_score=362.8 frequency=1 major_base=C major_cov=56/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/45 RA 793 . NC_000913 3785264 0 T C consensus_score=374.4 frequency=1 major_base=C major_cov=48/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/55 RA 794 . NC_000913 3785316 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=332.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=43/52 major_frequency=9.896e-01 minor_base=G minor_cov=0/1 new_cov=43/52 polymorphism_frequency=9.896e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/53 RA 795 . NC_000913 3785397 0 A G consensus_score=310.2 frequency=1 major_base=G major_cov=39/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/50 RA 796 . NC_000913 3785550 0 G A bias_e_value=3765420 bias_p_value=0.811223 consensus_score=283.4 fisher_strand_p_value=0.452381 frequency=1 ks_quality_p_value=1 major_base=A major_cov=37/46 major_frequency=9.881e-01 minor_base=C minor_cov=1/0 new_cov=37/46 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/46 RA 797 . NC_000913 3785589 0 C T consensus_score=282.3 frequency=1 major_base=T major_cov=41/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/47 RA 798 . NC_000913 3785595 0 G A consensus_score=294.6 frequency=1 major_base=A major_cov=40/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/44 RA 799 . NC_000913 3785730 0 T C consensus_score=256.4 frequency=1 major_base=C major_cov=33/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/39 RA 800 . NC_000913 3785766 0 C T consensus_score=228.2 frequency=1 major_base=T major_cov=38/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/35 RA 801 . NC_000913 3785772 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=253.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=37/34 major_frequency=9.861e-01 minor_base=A minor_cov=1/0 new_cov=37/34 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=38/35 RA 802 . NC_000913 3785781 0 C T consensus_score=241.8 frequency=1 major_base=T major_cov=38/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/39 RA 803 . NC_000913 3785786 0 T A consensus_score=271.0 frequency=1 major_base=A major_cov=37/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/41 RA 804 . NC_000913 3785790 0 C T consensus_score=223.5 frequency=1 major_base=T major_cov=37/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/39 RA 805 . NC_000913 3785859 0 A T bias_e_value=3533760 bias_p_value=0.761314 consensus_score=238.9 fisher_strand_p_value=0.394366 frequency=1 ks_quality_p_value=1 major_base=T major_cov=43/27 major_frequency=9.859e-01 minor_base=G minor_cov=0/1 new_cov=43/27 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/28 RA 806 . NC_000913 3785868 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=237.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=41/29 major_frequency=9.859e-01 minor_base=A minor_cov=1/0 new_cov=41/29 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/29 RA 807 . NC_000913 3785895 0 C T consensus_score=256.9 frequency=1 major_base=T major_cov=45/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/31 RA 808 . NC_000913 3785913 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=267.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=48/28 major_frequency=9.744e-01 minor_base=C minor_cov=1/1 new_cov=48/28 polymorphism_frequency=9.744e-01 polymorphism_score=NA prediction=consensus ref_cov=1/1 total_cov=49/29 RA 809 . NC_000913 3785934 0 T A consensus_score=250.2 frequency=1 major_base=A major_cov=46/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/31 RA 810 . NC_000913 3785955 0 T C bias_e_value=3311260 bias_p_value=0.713379 consensus_score=280.4 fisher_strand_p_value=0.346154 frequency=1 ks_quality_p_value=1 major_base=C major_cov=51/26 major_frequency=9.872e-01 minor_base=T minor_cov=0/1 new_cov=51/26 polymorphism_frequency=9.872e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=51/27 RA 811 . NC_000913 3785958 0 T C consensus_score=271.4 frequency=1 major_base=C major_cov=51/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/27 RA 812 . NC_000913 3785961 0 A G consensus_score=278.4 frequency=1 major_base=G major_cov=51/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/27 RA 813 . NC_000913 3785982 0 C T consensus_score=288.8 frequency=1 major_base=T major_cov=54/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/27 RA 814 . NC_000913 3785988 0 T A consensus_score=259.7 frequency=1 major_base=A major_cov=54/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/27 RA 815 . NC_000913 3786003 0 C T consensus_score=289.5 frequency=1 major_base=T major_cov=55/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/26 RA 816 . NC_000913 3786027 0 A G consensus_score=303.7 frequency=1 major_base=G major_cov=52/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/33 RA 817 . NC_000913 3786063 0 T C consensus_score=315.9 frequency=1 major_base=C major_cov=51/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/37 RA 818 . NC_000913 3786078 0 T A consensus_score=264.0 frequency=1 major_base=A major_cov=50/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/33 RA 819 . NC_000913 3786084 0 G A consensus_score=248.1 frequency=1 major_base=A major_cov=47/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/33 RA 820 . NC_000913 3786090 0 T A consensus_score=271.1 frequency=1 major_base=A major_cov=47/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/35 RA 821 . NC_000913 3786099 0 T C bias_e_value=3921300 bias_p_value=0.844807 consensus_score=307.7 fisher_strand_p_value=0.497461 frequency=1 ks_quality_p_value=1 major_base=C major_cov=45/40 major_frequency=9.770e-01 minor_base=A minor_cov=2/0 new_cov=45/40 polymorphism_frequency=9.770e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/40 RA 822 . NC_000913 3786444 0 C T consensus_score=257.1 frequency=1 major_base=T major_cov=27/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/48 RA 823 . NC_000913 3786465 0 C T bias_e_value=3627200 bias_p_value=0.781445 consensus_score=248.3 fisher_strand_p_value=0.416667 frequency=1 ks_quality_p_value=1 major_base=T major_cov=29/42 major_frequency=9.861e-01 minor_base=C minor_cov=1/0 new_cov=29/42 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=30/42 RA 824 . NC_000913 3786519 0 G A bias_e_value=3881170 bias_p_value=0.836162 consensus_score=229.2 fisher_strand_p_value=0.485294 frequency=1 ks_quality_p_value=1 major_base=A major_cov=32/35 major_frequency=9.853e-01 minor_base=C minor_cov=1/0 new_cov=32/35 polymorphism_frequency=9.853e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/35 RA 825 . NC_000913 3786606 0 G A consensus_score=213.0 frequency=1 major_base=A major_cov=41/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/26 RA 826 . NC_000913 3786704 0 A C consensus_score=263.0 frequency=1 major_base=C major_cov=49/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/25 RA 827 . NC_000913 3786936 0 C T consensus_score=242.6 frequency=1 major_base=T major_cov=36/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/33 RA 828 . NC_000913 3786972 0 T C consensus_score=250.3 frequency=1 major_base=C major_cov=35/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/35 RA 829 . NC_000913 3786975 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=241.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999586 major_base=T major_cov=35/34 major_frequency=9.857e-01 minor_base=C minor_cov=0/1 new_cov=35/34 polymorphism_frequency=9.857e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=0/1 total_cov=35/35 RA 830 . NC_000913 3786984 0 A G consensus_score=265.2 frequency=1 major_base=G major_cov=34/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/40 RA 831 . NC_000913 3787224 0 G A consensus_score=281.0 frequency=1 major_base=A major_cov=35/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/42 RA 832 . NC_000913 3787389 0 G A consensus_score=218.5 frequency=1 major_base=A major_cov=29/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/37 RA 833 . NC_000913 3787416 0 G A consensus_score=230.5 frequency=1 major_base=A major_cov=32/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/35 RA 834 . NC_000913 3787449 0 G T consensus_score=229.1 frequency=1 major_base=T major_cov=31/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/35 RA 835 . NC_000913 3787455 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=229.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/33 major_frequency=9.848e-01 minor_base=C minor_cov=1/0 new_cov=32/33 polymorphism_frequency=9.848e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=33/33 RA 836 . NC_000913 3787476 0 A G bias_e_value=3918130 bias_p_value=0.844123 consensus_score=250.9 fisher_strand_p_value=0.496483 frequency=1 ks_quality_p_value=1 major_base=G major_cov=34/38 major_frequency=9.730e-01 minor_base=T minor_cov=0/2 new_cov=34/38 polymorphism_frequency=9.730e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/40 RA 837 . NC_000913 3787485 0 G A consensus_score=243.9 frequency=1 major_base=A major_cov=34/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/39 RA 838 . NC_000913 3787509 0 A G bias_e_value=3789620 bias_p_value=0.816438 consensus_score=217.5 fisher_strand_p_value=0.459016 frequency=1 ks_quality_p_value=1 major_base=G major_cov=27/33 major_frequency=9.836e-01 minor_base=A minor_cov=1/0 new_cov=27/33 polymorphism_frequency=9.836e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=28/33 RA 839 . NC_000913 3787513 0 T C consensus_score=219.8 frequency=1 major_base=C major_cov=28/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/33 RA 840 . NC_000913 3787515 0 G A consensus_score=208.0 frequency=1 major_base=A major_cov=28/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/33 RA 841 . NC_000913 3787518 0 C T consensus_score=218.6 frequency=1 major_base=T major_cov=28/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/33 RA 842 . NC_000913 3787521 0 G A bias_e_value=4641480 bias_p_value=0.999962 consensus_score=204.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.991295 major_base=A major_cov=28/32 major_frequency=9.836e-01 minor_base=G minor_cov=0/1 new_cov=28/32 polymorphism_frequency=9.836e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=28/33 RA 843 . NC_000913 3787527 0 C T consensus_score=220.0 frequency=1 major_base=T major_cov=28/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/34 RA 844 . NC_000913 3787698 0 T A consensus_score=159.1 frequency=1 major_base=A major_cov=20/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/27 RA 845 . NC_000913 3787701 0 C T consensus_score=141.0 frequency=1 major_base=T major_cov=20/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/25 RA 846 . NC_000913 3787707 0 T C consensus_score=153.1 frequency=1 major_base=C major_cov=20/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/25 RA 847 . NC_000913 3787713 0 C T consensus_score=163.1 frequency=1 major_base=T major_cov=23/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/28 RA 848 . NC_000913 3787773 0 A G consensus_score=194.8 frequency=1 major_base=G major_cov=28/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/27 RA 849 . NC_000913 3787803 0 T G consensus_score=229.9 frequency=1 major_base=G major_cov=37/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/29 RA 850 . NC_000913 3787809 0 T G consensus_score=237.0 frequency=1 major_base=G major_cov=40/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/28 RA 851 . NC_000913 3787812 0 C T bias_e_value=3607140 bias_p_value=0.777125 consensus_score=234.9 fisher_strand_p_value=0.411765 frequency=1 ks_quality_p_value=1 major_base=T major_cov=40/27 major_frequency=9.853e-01 minor_base=C minor_cov=0/1 new_cov=40/27 polymorphism_frequency=9.853e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=40/28 RA 852 . NC_000913 3787818 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=225.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=39/28 major_frequency=9.853e-01 minor_base=A minor_cov=1/0 new_cov=39/28 polymorphism_frequency=9.853e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/28 RA 853 . NC_000913 3787992 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=264.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=57/27 major_frequency=9.882e-01 minor_base=G minor_cov=1/0 new_cov=57/27 polymorphism_frequency=9.882e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=58/27 RA 854 . NC_000913 3788241 0 T C consensus_score=333.4 frequency=1 major_base=C major_cov=44/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/49 RA 855 . NC_000913 3788349 0 G A consensus_score=302.2 frequency=1 major_base=A major_cov=43/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/46 RA 856 . NC_000913 3788350 0 T C bias_e_value=1623910 bias_p_value=0.349856 consensus_score=290.6 fisher_strand_p_value=0.10867 frequency=1 ks_quality_p_value=1 major_base=C major_cov=40/46 major_frequency=9.663e-01 minor_base=A minor_cov=3/0 new_cov=40/46 polymorphism_frequency=9.663e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/46 RA 857 . NC_000913 3788382 0 A G consensus_score=269.6 frequency=1 major_base=G major_cov=34/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/43 RA 858 . NC_000913 3788475 0 C T consensus_score=251.7 frequency=1 major_base=T major_cov=31/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/45 RA 859 . NC_000913 3788523 0 G A consensus_score=279.2 frequency=1 major_base=A major_cov=37/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/44 RA 860 . NC_000913 3788598 0 C T bias_e_value=2313020 bias_p_value=0.498319 consensus_score=246.9 fisher_strand_p_value=0.186813 frequency=1 ks_quality_p_value=0.993946 major_base=T major_cov=32/44 major_frequency=9.744e-01 minor_base=C minor_cov=2/0 new_cov=32/44 polymorphism_frequency=9.744e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=2/0 total_cov=34/44 RA 861 . NC_000913 3788628 0 A G consensus_score=284.5 frequency=1 major_base=G major_cov=36/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/43 RA 862 . NC_000913 3788646 0 A G consensus_score=267.2 frequency=1 major_base=G major_cov=33/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/41 RA 863 . NC_000913 3788649 0 T C consensus_score=268.4 frequency=1 major_base=C major_cov=33/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/41 RA 864 . NC_000913 3788688 0 C T consensus_score=233.6 frequency=1 major_base=T major_cov=33/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/41 RA 865 . NC_000913 3788709 0 G A consensus_score=270.2 frequency=1 major_base=A major_cov=33/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/43 RA 866 . NC_000913 3788737 0 G T consensus_score=237.3 frequency=1 major_base=T major_cov=30/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/41 RA 867 . NC_000913 3788752 0 T C consensus_score=237.9 frequency=1 major_base=C major_cov=28/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/38 RA 868 . NC_000913 3788754 0 G A consensus_score=221.2 frequency=1 major_base=A major_cov=28/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/38 RA 869 . NC_000913 3789039 0 G A consensus_score=228.6 frequency=1 major_base=A major_cov=41/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/25 RA 870 . NC_000913 3789040 0 T C consensus_score=233.3 frequency=1 major_base=C major_cov=41/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/25 RA 871 . NC_000913 3789146 0 G C consensus_score=283.6 frequency=1 major_base=C major_cov=46/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/32 RA 872 . NC_000913 3789272 0 C T consensus_score=314.8 frequency=1 major_base=T major_cov=53/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/41 RA 873 . NC_000913 3789309 0 A G consensus_score=363.4 frequency=1 major_base=G major_cov=52/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/50 RA 874 . NC_000913 3789479 0 G A consensus_score=339.4 frequency=1 major_base=A major_cov=39/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/55 RA 875 . NC_000913 3789563 0 A G consensus_score=282.9 frequency=1 major_base=G major_cov=29/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/49 RA 876 . NC_000913 3789647 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=248.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=38/35 major_frequency=9.865e-01 minor_base=C minor_cov=1/0 new_cov=38/35 polymorphism_frequency=9.865e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=39/36 RA 877 . NC_000913 3789669 0 G C consensus_score=250.5 frequency=1 major_base=C major_cov=35/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/36 RA 878 . NC_000913 3789755 0 C T consensus_score=217.2 frequency=1 major_base=T major_cov=33/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/29 RA 879 . NC_000913 3789919 0 A G consensus_score=290.1 frequency=1 major_base=G major_cov=44/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/36 RA 880 . NC_000913 3790401 0 A C consensus_score=394.5 frequency=1 major_base=C major_cov=56/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/56 RA 881 . NC_000913 3790407 0 G A consensus_score=373.5 frequency=1 major_base=A major_cov=57/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=57/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/56 RA 882 . NC_000913 3790422 0 A G consensus_score=401.9 frequency=1 major_base=G major_cov=60/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/53 RA 883 . NC_000913 3790491 0 A G consensus_score=415.8 frequency=1 major_base=G major_cov=55/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/61 RA 884 . NC_000913 3790509 0 T C bias_e_value=2306430 bias_p_value=0.496898 consensus_score=373.8 fisher_strand_p_value=0.184839 frequency=1 ks_quality_p_value=1 major_base=C major_cov=43/59 major_frequency=9.808e-01 minor_base=A minor_cov=2/0 new_cov=43/59 polymorphism_frequency=9.808e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/59 RA 885 . NC_000913 3790524 0 G T consensus_score=365.6 frequency=1 major_base=T major_cov=48/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/59 RA 886 . NC_000913 3790533 0 G T consensus_score=332.6 frequency=1 major_base=T major_cov=40/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/58 RA 887 . NC_000913 3790536 0 A C bias_e_value=3592240 bias_p_value=0.773913 consensus_score=336.1 fisher_strand_p_value=0.408163 frequency=1 ks_quality_p_value=1 major_base=C major_cov=39/58 major_frequency=9.898e-01 minor_base=T minor_cov=1/0 new_cov=39/58 polymorphism_frequency=9.898e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/58 RA 888 . NC_000913 3790542 0 A G consensus_score=374.3 frequency=1 major_base=G major_cov=42/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/61 RA 889 . NC_000913 3790548 0 C A consensus_score=348.2 frequency=1 major_base=A major_cov=40/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/60 RA 890 . NC_000913 3790551 0 C T consensus_score=336.5 frequency=1 major_base=T major_cov=40/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/60 RA 891 . NC_000913 3790575 0 G A consensus_score=338.8 frequency=1 major_base=A major_cov=37/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/59 RA 892 . NC_000913 3790584 0 A G consensus_score=345.0 frequency=1 major_base=G major_cov=37/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/58 RA 893 . NC_000913 3790596 0 A G consensus_score=357.2 frequency=1 major_base=G major_cov=40/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/58 RA 894 . NC_000913 3790650 0 A G consensus_score=326.0 frequency=1 major_base=G major_cov=40/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/52 RA 895 . NC_000913 3790665 0 T C bias_e_value=3811480 bias_p_value=0.821148 consensus_score=306.1 fisher_strand_p_value=0.465116 frequency=1 ks_quality_p_value=1 major_base=C major_cov=39/46 major_frequency=9.884e-01 minor_base=T minor_cov=1/0 new_cov=39/46 polymorphism_frequency=9.884e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=40/46 RA 896 . NC_000913 3790667 0 A G consensus_score=305.4 frequency=1 major_base=G major_cov=39/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/46 RA 897 . NC_000913 3790668 0 C T bias_e_value=3788930 bias_p_value=0.816288 consensus_score=300.7 fisher_strand_p_value=0.458824 frequency=1 ks_quality_p_value=1 major_base=T major_cov=38/46 major_frequency=9.882e-01 minor_base=C minor_cov=1/0 new_cov=38/46 polymorphism_frequency=9.882e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=39/46 RA 898 . NC_000913 3790671 0 C T consensus_score=301.5 frequency=1 major_base=T major_cov=39/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/46 RA 899 . NC_000913 3790680 0 G A consensus_score=295.0 frequency=1 major_base=A major_cov=42/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/47 RA 900 . NC_000913 3790686 0 G A bias_e_value=3807410 bias_p_value=0.820271 consensus_score=285.2 fisher_strand_p_value=0.465116 frequency=1 ks_quality_p_value=0.997541 major_base=A major_cov=39/46 major_frequency=9.884e-01 minor_base=C minor_cov=1/0 new_cov=39/46 polymorphism_frequency=9.884e-01 polymorphism_score=-6.7 prediction=consensus ref_cov=0/0 total_cov=40/46 RA 901 . NC_000913 3790689 0 A G consensus_score=307.7 frequency=1 major_base=G major_cov=40/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/46 RA 902 . NC_000913 3790698 0 G A consensus_score=287.3 frequency=1 major_base=A major_cov=40/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/47 RA 903 . NC_000913 3790707 0 A G consensus_score=304.2 frequency=1 major_base=G major_cov=37/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/47 RA 904 . NC_000913 3790731 0 A G consensus_score=289.8 frequency=1 major_base=G major_cov=35/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/45 RA 905 . NC_000913 3790740 0 C T consensus_score=251.7 frequency=1 major_base=T major_cov=30/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/43 RA 906 . NC_000913 3790743 0 A G bias_e_value=124261 bias_p_value=0.0267708 consensus_score=170.1 fisher_strand_p_value=0.00412439 frequency=1 ks_quality_p_value=1 major_base=G major_cov=30/33 major_frequency=8.630e-01 minor_base=T minor_cov=0/10 new_cov=30/33 polymorphism_frequency=8.630e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/43 RA 907 . NC_000913 3790746 0 G A consensus_score=243.8 frequency=1 major_base=A major_cov=30/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/43 RA 908 . NC_000913 3790749 0 G A bias_e_value=3603820 bias_p_value=0.776409 consensus_score=240.4 fisher_strand_p_value=0.410959 frequency=1 ks_quality_p_value=1 major_base=A major_cov=29/43 major_frequency=9.863e-01 minor_base=C minor_cov=1/0 new_cov=29/43 polymorphism_frequency=9.863e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/43 RA 909 . NC_000913 3790755 0 G A consensus_score=265.8 frequency=1 major_base=A major_cov=34/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/46 RA 910 . NC_000913 3790809 0 T A consensus_score=294.8 frequency=1 major_base=A major_cov=40/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/46 RA 911 . NC_000913 3790821 0 A T consensus_score=273.7 frequency=1 major_base=T major_cov=39/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/41 RA 912 . NC_000913 3790827 0 G A consensus_score=263.9 frequency=1 major_base=A major_cov=36/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/42 RA 913 . NC_000913 3790839 0 A G consensus_score=289.1 frequency=1 major_base=G major_cov=41/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/39 RA 914 . NC_000913 3790851 0 T C consensus_score=266.0 frequency=1 major_base=C major_cov=42/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/34 RA 915 . NC_000913 3790857 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=243.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99964 major_base=A major_cov=40/34 major_frequency=9.867e-01 minor_base=C minor_cov=1/0 new_cov=40/34 polymorphism_frequency=9.867e-01 polymorphism_score=-6.5 prediction=consensus ref_cov=1/0 total_cov=41/34 RA 916 . NC_000913 3790866 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=271.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=41/35 major_frequency=9.870e-01 minor_base=A minor_cov=1/0 new_cov=41/35 polymorphism_frequency=9.870e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=42/35 RA 917 . NC_000913 3790911 0 T G consensus_score=241.6 frequency=1 major_base=G major_cov=41/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/29 RA 918 . NC_000913 3790913 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=232.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999586 major_base=A major_cov=40/29 major_frequency=9.857e-01 minor_base=G minor_cov=1/0 new_cov=40/29 polymorphism_frequency=9.857e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=0/0 total_cov=41/29 RA 919 . NC_000913 3790914 0 G A consensus_score=234.5 frequency=1 major_base=A major_cov=41/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/29 RA 920 . NC_000913 3790917 0 T C consensus_score=250.3 frequency=1 major_base=C major_cov=41/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/29 RA 921 . NC_000913 3790919 0 A G bias_e_value=3641850 bias_p_value=0.784602 consensus_score=240.5 fisher_strand_p_value=0.42029 frequency=1 ks_quality_p_value=1 major_base=G major_cov=40/28 major_frequency=9.855e-01 minor_base=A minor_cov=0/1 new_cov=40/28 polymorphism_frequency=9.855e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=41/29 RA 922 . NC_000913 3790923 0 A G consensus_score=258.3 frequency=1 major_base=G major_cov=41/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/29 RA 923 . NC_000913 3790929 0 A G consensus_score=255.7 frequency=1 major_base=G major_cov=41/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/29 RA 924 . NC_000913 3790938 0 G T consensus_score=247.3 frequency=1 major_base=T major_cov=41/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/29 RA 925 . NC_000913 3790959 0 T C consensus_score=245.6 frequency=1 major_base=C major_cov=39/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/29 RA 926 . NC_000913 3790983 0 A G consensus_score=237.7 frequency=1 major_base=G major_cov=38/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/29 RA 927 . NC_000913 3790995 0 G A consensus_score=238.9 frequency=1 major_base=A major_cov=40/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/31 RA 928 . NC_000913 3790998 0 A G consensus_score=258.6 frequency=1 major_base=G major_cov=40/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/31 RA 929 . NC_000913 3791004 0 A G bias_e_value=3580720 bias_p_value=0.771433 consensus_score=264.2 fisher_strand_p_value=0.405405 frequency=1 ks_quality_p_value=1 major_base=G major_cov=44/29 major_frequency=9.865e-01 minor_base=A minor_cov=0/1 new_cov=44/29 polymorphism_frequency=9.865e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=44/30 RA 930 . NC_000913 3791007 0 A G consensus_score=267.2 frequency=1 major_base=G major_cov=44/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/30 RA 931 . NC_000913 3791013 0 T G bias_e_value=3650850 bias_p_value=0.786542 consensus_score=254.3 fisher_strand_p_value=0.422535 frequency=1 ks_quality_p_value=1 major_base=G major_cov=41/29 major_frequency=9.859e-01 minor_base=A minor_cov=0/1 new_cov=41/29 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/30 RA 932 . NC_000913 3791030 0 A G consensus_score=256.7 frequency=1 major_base=G major_cov=41/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/30 RA 933 . NC_000913 3791043 0 A G consensus_score=259.7 frequency=1 major_base=G major_cov=45/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/27 RA 934 . NC_000913 3791058 0 G A consensus_score=208.3 frequency=1 major_base=A major_cov=41/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/23 RA 935 . NC_000913 3791061 0 A G consensus_score=227.6 frequency=1 major_base=G major_cov=41/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/23 RA 936 . NC_000913 3791067 0 A G consensus_score=211.4 frequency=1 major_base=G major_cov=36/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/23 RA 937 . NC_000913 3791085 0 G T bias_e_value=3348740 bias_p_value=0.721454 consensus_score=224.1 fisher_strand_p_value=0.353846 frequency=1 ks_quality_p_value=1 major_base=T major_cov=42/22 major_frequency=9.846e-01 minor_base=G minor_cov=0/1 new_cov=42/22 polymorphism_frequency=9.846e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=42/24 RA 938 . NC_000913 3791091 0 A G consensus_score=249.2 frequency=1 major_base=G major_cov=46/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/24 RA 939 . NC_000913 3791103 0 G A consensus_score=225.9 frequency=1 major_base=A major_cov=45/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/24 RA 940 . NC_000913 3791109 0 G A consensus_score=246.2 frequency=1 major_base=A major_cov=43/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/32 RA 941 . NC_000913 3791130 0 A G consensus_score=255.3 frequency=1 major_base=G major_cov=40/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/34 RA 942 . NC_000913 3791133 0 A G bias_e_value=3759230 bias_p_value=0.80989 consensus_score=240.6 fisher_strand_p_value=0.450704 frequency=1 ks_quality_p_value=1 major_base=G major_cov=39/31 major_frequency=9.859e-01 minor_base=A minor_cov=0/1 new_cov=39/31 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=39/32 RA 943 . NC_000913 3791139 0 C T consensus_score=237.8 frequency=1 major_base=T major_cov=39/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/32 RA 944 . NC_000913 3791160 0 G A consensus_score=273.0 frequency=1 major_base=A major_cov=39/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/40 RA 945 . NC_000913 3791163 0 C G consensus_score=267.6 frequency=1 major_base=G major_cov=39/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/40 RA 946 . NC_000913 3791166 0 G A bias_e_value=3908950 bias_p_value=0.842146 consensus_score=267.9 fisher_strand_p_value=0.493671 frequency=1 ks_quality_p_value=1 major_base=A major_cov=38/40 major_frequency=9.873e-01 minor_base=C minor_cov=1/0 new_cov=38/40 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/40 RA 947 . NC_000913 3791184 0 G A bias_e_value=3908950 bias_p_value=0.842146 consensus_score=269.8 fisher_strand_p_value=0.493671 frequency=1 ks_quality_p_value=1 major_base=A major_cov=38/40 major_frequency=9.873e-01 minor_base=C minor_cov=1/0 new_cov=38/40 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/40 RA 948 . NC_000913 3791211 0 A G consensus_score=271.2 frequency=1 major_base=G major_cov=39/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/43 RA 949 . NC_000913 3791259 0 C T bias_e_value=3893980 bias_p_value=0.83892 consensus_score=302.5 fisher_strand_p_value=0.48913 frequency=1 ks_quality_p_value=1 major_base=T major_cov=44/47 major_frequency=9.891e-01 minor_base=C minor_cov=1/0 new_cov=44/47 polymorphism_frequency=9.891e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=45/47 RA 950 . NC_000913 3791274 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=305.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=44/47 major_frequency=9.891e-01 minor_base=C minor_cov=0/1 new_cov=44/47 polymorphism_frequency=9.891e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=44/48 RA 951 . NC_000913 3791277 0 G C bias_e_value=4641650 bias_p_value=1 consensus_score=317.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=43/47 major_frequency=9.783e-01 minor_base=A minor_cov=1/1 new_cov=43/47 polymorphism_frequency=9.783e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=0/0 total_cov=44/48 RA 952 . NC_000913 3791286 0 T C consensus_score=320.0 frequency=1 major_base=C major_cov=45/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/46 RA 953 . NC_000913 3791287 0 A T consensus_score=310.9 frequency=1 major_base=T major_cov=45/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/46 RA 954 . NC_000913 3791346 0 C T consensus_score=292.7 frequency=1 major_base=T major_cov=36/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/51 RA 955 . NC_000913 3791391 0 A G bias_e_value=3209790 bias_p_value=0.691519 consensus_score=287.6 fisher_strand_p_value=0.329412 frequency=1 ks_quality_p_value=0.989967 major_base=G major_cov=27/57 major_frequency=9.882e-01 minor_base=A minor_cov=1/0 new_cov=27/57 polymorphism_frequency=9.882e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=1/0 total_cov=28/57 RA 956 . NC_000913 3791406 0 A G consensus_score=265.9 frequency=1 major_base=G major_cov=28/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/47 RA 957 . NC_000913 3791496 0 A G consensus_score=220.3 frequency=1 major_base=G major_cov=20/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/43 RA 958 . NC_000913 3791526 0 G A consensus_score=205.4 frequency=1 major_base=A major_cov=16/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/45 RA 959 . NC_000913 3791553 0 A G consensus_score=208.8 frequency=1 major_base=G major_cov=15/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/42 RA 960 . NC_000913 3791661 0 T C consensus_score=210.4 frequency=1 major_base=C major_cov=27/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/31 RA 961 . NC_000913 3791676 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=174.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=24/27 major_frequency=9.808e-01 minor_base=G minor_cov=0/1 new_cov=24/27 polymorphism_frequency=9.808e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=24/28 RA 962 . NC_000913 3791688 0 T C consensus_score=186.6 frequency=1 major_base=C major_cov=25/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/28 RA 963 . NC_000913 3791694 0 G A bias_e_value=3834650 bias_p_value=0.82614 consensus_score=172.5 fisher_strand_p_value=0.471698 frequency=1 ks_quality_p_value=1 major_base=A major_cov=24/28 major_frequency=9.811e-01 minor_base=C minor_cov=1/0 new_cov=24/28 polymorphism_frequency=9.811e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/28 RA 964 . NC_000913 3791700 0 C A consensus_score=168.8 frequency=1 major_base=A major_cov=25/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/26 RA 965 . NC_000913 3791706 0 A G consensus_score=182.8 frequency=1 major_base=G major_cov=25/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/26 RA 966 . NC_000913 3791712 0 G A consensus_score=167.7 frequency=1 major_base=A major_cov=27/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/24 RA 967 . NC_000913 3791829 0 C T consensus_score=186.9 frequency=1 major_base=T major_cov=34/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/22 RA 968 . NC_000913 3791832 0 A G consensus_score=199.0 frequency=1 major_base=G major_cov=34/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/22 RA 969 . NC_000913 3791889 0 A G consensus_score=159.6 frequency=1 major_base=G major_cov=29/19 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/19 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/19 RA 970 . NC_000913 3791943 0 A G bias_e_value=3779190 bias_p_value=0.81419 consensus_score=191.8 fisher_strand_p_value=0.45614 frequency=1 ks_quality_p_value=1 major_base=G major_cov=31/25 major_frequency=9.825e-01 minor_base=A minor_cov=0/1 new_cov=31/25 polymorphism_frequency=9.825e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=31/26 RA 971 . NC_000913 3791976 0 G A bias_e_value=3820780 bias_p_value=0.82315 consensus_score=200.6 fisher_strand_p_value=0.467742 frequency=1 ks_quality_p_value=1 major_base=A major_cov=33/28 major_frequency=9.839e-01 minor_base=G minor_cov=0/1 new_cov=33/28 polymorphism_frequency=9.839e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=33/29 RA 972 . NC_000913 3791997 0 T C consensus_score=232.6 frequency=1 major_base=C major_cov=30/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/35 RA 973 . NC_000913 3792018 0 G A consensus_score=239.2 frequency=1 major_base=A major_cov=31/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/38 RA 974 . NC_000913 3792023 0 G A bias_e_value=3852600 bias_p_value=0.830006 consensus_score=233.7 fisher_strand_p_value=0.486111 frequency=1 ks_quality_p_value=0.981012 major_base=A major_cov=34/37 major_frequency=9.861e-01 minor_base=G minor_cov=1/0 new_cov=34/37 polymorphism_frequency=9.861e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=1/0 total_cov=35/37 RA 975 . NC_000913 3792114 0 G A consensus_score=258.2 frequency=1 major_base=A major_cov=36/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/36 RA 976 . NC_000913 3792180 0 A G consensus_score=301.8 frequency=1 major_base=G major_cov=44/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/38 RA 977 . NC_000913 3792186 0 A C consensus_score=300.7 frequency=1 major_base=C major_cov=44/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/39 RA 978 . NC_000913 3792258 0 G T consensus_score=247.6 frequency=1 major_base=T major_cov=43/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/35 RA 979 . NC_000913 3792375 0 A C consensus_score=256.1 frequency=1 major_base=C major_cov=35/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/37 RA 980 . NC_000913 3792402 0 G A consensus_score=277.3 frequency=1 major_base=A major_cov=37/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/43 RA 981 . NC_000913 3792501 0 C G bias_e_value=3889570 bias_p_value=0.837971 consensus_score=293.5 fisher_strand_p_value=0.487805 frequency=1 ks_quality_p_value=1 major_base=G major_cov=42/39 major_frequency=9.878e-01 minor_base=A minor_cov=0/1 new_cov=42/39 polymorphism_frequency=9.878e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/40 RA 982 . NC_000913 3792616 0 A G bias_e_value=3823390 bias_p_value=0.823713 consensus_score=292.4 fisher_strand_p_value=0.470588 frequency=1 ks_quality_p_value=0.995528 major_base=G major_cov=45/39 major_frequency=9.882e-01 minor_base=T minor_cov=0/1 new_cov=45/39 polymorphism_frequency=9.882e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/40 RA 983 . NC_000913 3794037 0 A G bias_e_value=2715420 bias_p_value=0.585011 consensus_score=305.1 fisher_strand_p_value=0.241758 frequency=1 ks_quality_p_value=1 major_base=G major_cov=46/43 major_frequency=9.780e-01 minor_base=T minor_cov=0/2 new_cov=46/43 polymorphism_frequency=9.780e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/45 RA 984 . NC_000913 3794122 0 A G consensus_score=313.2 frequency=1 major_base=G major_cov=43/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/43 RA 985 . NC_000913 3794130 0 A G consensus_score=300.9 frequency=1 major_base=G major_cov=39/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/43 RA 986 . NC_000913 3794217 0 G A consensus_score=289.4 frequency=1 major_base=A major_cov=35/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/48 RA 987 . NC_000913 3794241 0 C T consensus_score=260.4 frequency=1 major_base=T major_cov=33/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/46 RA 988 . NC_000913 3794280 0 G A bias_e_value=3825680 bias_p_value=0.824207 consensus_score=275.7 fisher_strand_p_value=0.469136 frequency=1 ks_quality_p_value=1 major_base=A major_cov=37/43 major_frequency=9.877e-01 minor_base=C minor_cov=1/0 new_cov=37/43 polymorphism_frequency=9.877e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/43 RA 989 . NC_000913 3794298 0 C T consensus_score=296.2 frequency=1 major_base=T major_cov=49/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/35 RA 990 . NC_000913 3794307 0 T C consensus_score=293.9 frequency=1 major_base=C major_cov=48/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/34 RA 991 . NC_000913 3794325 0 C T consensus_score=262.0 frequency=1 major_base=T major_cov=42/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/33 RA 992 . NC_000913 3794328 0 T A consensus_score=250.7 frequency=1 major_base=A major_cov=42/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/33 RA 993 . NC_000913 3794337 0 A G bias_e_value=3866720 bias_p_value=0.833047 consensus_score=275.9 fisher_strand_p_value=0.481013 frequency=1 ks_quality_p_value=1 major_base=G major_cov=41/37 major_frequency=9.873e-01 minor_base=T minor_cov=0/1 new_cov=41/37 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/38 RA 994 . NC_000913 3794640 0 T A consensus_score=255.2 frequency=1 major_base=A major_cov=36/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/39 RA 995 . NC_000913 3794646 0 G A consensus_score=244.1 frequency=1 major_base=A major_cov=36/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/38 RA 996 . NC_000913 3794649 0 T C bias_e_value=2701980 bias_p_value=0.582117 consensus_score=242.3 fisher_strand_p_value=0.239726 frequency=1 ks_quality_p_value=1 major_base=C major_cov=34/37 major_frequency=9.726e-01 minor_base=A minor_cov=2/0 new_cov=34/37 polymorphism_frequency=9.726e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=36/38 RA 997 . NC_000913 3794721 0 G T consensus_score=255.4 frequency=1 major_base=T major_cov=41/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/35 RA 998 . NC_000913 3794829 0 A G consensus_score=290.9 frequency=1 major_base=G major_cov=39/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/43 RA 999 . NC_000913 3795093 0 T C consensus_score=215.8 frequency=1 major_base=C major_cov=26/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/36 RA 1000 . NC_000913 3795192 0 C A consensus_score=244.2 frequency=1 major_base=A major_cov=44/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/31 RA 1001 . NC_000913 3795334 0 A G bias_e_value=2321850 bias_p_value=0.50022 consensus_score=265.8 fisher_strand_p_value=0.186813 frequency=1 ks_quality_p_value=1 major_base=G major_cov=44/32 major_frequency=9.744e-01 minor_base=T minor_cov=0/2 new_cov=44/32 polymorphism_frequency=9.744e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=0/0 total_cov=44/34 RA 1002 . NC_000913 3795336 0 A C bias_e_value=4641650 bias_p_value=1 consensus_score=271.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=43/34 major_frequency=9.872e-01 minor_base=A minor_cov=1/0 new_cov=43/34 polymorphism_frequency=9.872e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=44/34 RA 1003 . NC_000913 3795366 0 C T consensus_score=267.0 frequency=1 major_base=T major_cov=47/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/28 RA 1004 . NC_000913 3795369 0 A C consensus_score=262.1 frequency=1 major_base=C major_cov=47/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/28 RA 1005 . NC_000913 3795480 0 T C consensus_score=230.4 frequency=1 major_base=C major_cov=28/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/37 RA 1006 . NC_000913 3795591 0 G T consensus_score=262.1 frequency=1 major_base=T major_cov=34/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/44 RA 1007 . NC_000913 3795744 0 G A consensus_score=284.6 frequency=1 major_base=A major_cov=36/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/47 RA 1008 . NC_000913 3795750 0 T C consensus_score=297.6 frequency=1 major_base=C major_cov=36/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/48 RA 1009 . NC_000913 3795847 0 T C consensus_score=325.6 frequency=1 major_base=C major_cov=49/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/41 RA 1010 . NC_000913 3795909 0 A G consensus_score=288.1 frequency=1 major_base=G major_cov=49/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/33 RA 1011 . NC_000913 3796197 0 G T consensus_score=325.5 frequency=1 major_base=T major_cov=35/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/54 RA 1012 . NC_000913 3796254 0 C T consensus_score=302.5 frequency=1 major_base=T major_cov=34/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/52 RA 1013 . NC_000913 3796317 0 C A bias_e_value=3547620 bias_p_value=0.764301 consensus_score=276.0 fisher_strand_p_value=0.39759 frequency=1 ks_quality_p_value=1 major_base=A major_cov=32/50 major_frequency=9.880e-01 minor_base=C minor_cov=1/0 new_cov=32/50 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=33/50 RA 1014 . NC_000913 3796318 0 A T consensus_score=289.0 frequency=1 major_base=T major_cov=33/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/50 RA 1015 . NC_000913 3796344 0 T G bias_e_value=4639690 bias_p_value=0.999577 consensus_score=287.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.971042 major_base=G major_cov=35/47 major_frequency=9.880e-01 minor_base=A minor_cov=0/1 new_cov=35/47 polymorphism_frequency=9.880e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/0 total_cov=35/48 RA 1016 . NC_000913 3796432 0 T C bias_e_value=3582010 bias_p_value=0.771711 consensus_score=225.6 fisher_strand_p_value=0.415385 frequency=1 ks_quality_p_value=0.976718 major_base=C major_cov=26/38 major_frequency=9.846e-01 minor_base=A minor_cov=1/0 new_cov=26/38 polymorphism_frequency=9.846e-01 polymorphism_score=-5.3 prediction=consensus ref_cov=0/0 total_cov=27/38 RA 1017 . NC_000913 3796473 0 C T consensus_score=195.6 frequency=1 major_base=T major_cov=26/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/34 RA 1018 . NC_000913 3796485 0 T C consensus_score=182.6 frequency=1 major_base=C major_cov=26/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/32 RA 1019 . NC_000913 3796755 0 G A consensus_score=118.4 frequency=1 major_base=A major_cov=16/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/18 RA 1020 . NC_000913 3796782 0 G A consensus_score=93.6 frequency=1 major_base=A major_cov=13/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/14 RA 1021 . NC_000913 3796821 0 A T consensus_score=40.0 deleted=1 frequency=1 major_base=T major_cov=7/6 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/6 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/6 RA 1022 . NC_000913 3807964 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=62.1 deleted=1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=2/18 major_frequency=9.091e-01 minor_base=T minor_cov=0/2 new_cov=2/18 polymorphism_frequency=9.091e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=2/20 RA 1023 . NC_000913 3807970 0 T C consensus_score=76.3 deleted=1 frequency=1 major_base=C major_cov=2/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=2/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=2/20 RA 1024 . NC_000913 3807973 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=55.4 deleted=1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=2/19 major_frequency=9.545e-01 minor_base=G minor_cov=0/1 new_cov=2/19 polymorphism_frequency=9.545e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=2/20 RA 1025 . NC_000913 3807976 0 G A consensus_score=71.9 deleted=1 frequency=1 major_base=A major_cov=2/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=2/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=2/20 RA 1026 . NC_000913 3807987 0 A G consensus_score=83.0 deleted=1 frequency=1 major_base=G major_cov=2/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=2/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=2/23 RA 1027 . NC_000913 3807988 0 A G consensus_score=81.7 deleted=1 frequency=1 major_base=G major_cov=2/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=2/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=2/23 RA 1028 . NC_000913 3807991 0 A C consensus_score=83.9 deleted=1 frequency=1 major_base=C major_cov=2/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=2/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=2/23 RA 1029 . NC_000913 3808017 0 T C consensus_score=122.3 frequency=1 major_base=C major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1030 . NC_000913 3808030 0 A G consensus_score=117.0 frequency=1 major_base=G major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1031 . NC_000913 3808036 0 A G consensus_score=113.2 frequency=1 major_base=G major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1032 . NC_000913 3808042 0 C T consensus_score=114.7 frequency=1 major_base=T major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1033 . NC_000913 3808044 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=109.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=11/21 major_frequency=9.697e-01 minor_base=G minor_cov=0/1 new_cov=11/21 polymorphism_frequency=9.697e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=11/22 RA 1034 . NC_000913 3808045 0 C T consensus_score=107.9 frequency=1 major_base=T major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1035 . NC_000913 3808048 0 G C consensus_score=116.1 frequency=1 major_base=C major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1036 . NC_000913 3808053 0 T A consensus_score=115.2 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1037 . NC_000913 3808057 0 G A consensus_score=113.4 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1038 . NC_000913 3808063 0 A G consensus_score=117.3 frequency=1 major_base=G major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1039 . NC_000913 3808091 0 T A consensus_score=112.1 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1040 . NC_000913 3808093 0 T A consensus_score=115.2 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1041 . NC_000913 3808102 0 T A consensus_score=113.4 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1042 . NC_000913 3808107 0 C G consensus_score=122.4 frequency=1 major_base=G major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1043 . NC_000913 3808110 0 G A consensus_score=112.3 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1044 . NC_000913 3808111 0 G A consensus_score=111.5 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1045 . NC_000913 3808115 0 T C consensus_score=121.0 frequency=1 major_base=C major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1046 . NC_000913 3808129 0 T A consensus_score=111.7 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1047 . NC_000913 3808135 0 T A consensus_score=115.2 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1048 . NC_000913 3808138 0 C T consensus_score=115.2 frequency=1 major_base=T major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1049 . NC_000913 3808139 0 G A consensus_score=115.2 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1050 . NC_000913 3808147 1 . T consensus_score=115.2 frequency=1 major_base=T major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1051 . NC_000913 3808149 1 . T bias_e_value=3955610 bias_p_value=0.852198 consensus_score=101.4 fisher_strand_p_value=0.534926 frequency=1 ks_quality_p_value=0.950057 major_base=T major_cov=11/20 major_frequency=9.118e-01 minor_base=. minor_cov=0/3 new_cov=11/20 polymorphism_frequency=9.118e-01 polymorphism_score=5.9 prediction=consensus ref_cov=0/3 total_cov=11/23 RA 1052 . NC_000913 3808151 0 T A bias_e_value=4036340 bias_p_value=0.86959 consensus_score=89.2 fisher_strand_p_value=0.534926 frequency=1 ks_quality_p_value=1 major_base=A major_cov=11/20 major_frequency=9.118e-01 minor_base=T minor_cov=0/3 new_cov=11/20 polymorphism_frequency=9.118e-01 polymorphism_score=-0.9 prediction=consensus ref_cov=0/3 total_cov=11/23 RA 1053 . NC_000913 3808156 0 G A consensus_score=115.2 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1054 . NC_000913 3808159 0 T C consensus_score=122.3 frequency=1 major_base=C major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1055 . NC_000913 3808161 0 G A consensus_score=115.2 frequency=1 major_base=A major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1056 . NC_000913 3808166 1 . G consensus_score=107.0 frequency=1 major_base=G major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1057 . NC_000913 3808168 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=118.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=11/22 major_frequency=9.706e-01 minor_base=T minor_cov=0/1 new_cov=11/22 polymorphism_frequency=9.706e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=11/23 RA 1058 . NC_000913 3808180 0 A . consensus_score=155.7 frequency=1 major_base=. major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1059 . NC_000913 3808186 0 C T consensus_score=116.2 frequency=1 major_base=T major_cov=11/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/23 RA 1060 . NC_000913 3808224 0 A C consensus_score=111.1 frequency=1 major_base=C major_cov=11/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/20 RA 1061 . NC_000913 3808231 0 T G consensus_score=69.0 deleted=1 frequency=1 major_base=G major_cov=10/10 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=10/10 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=10/10 RA 1062 . NC_000913 3808233 0 C T consensus_score=65.6 deleted=1 frequency=1 major_base=T major_cov=10/10 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=10/10 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=10/10 RA 1063 . NC_000913 3808234 0 T A consensus_score=59.4 deleted=1 frequency=1 major_base=A major_cov=10/10 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=10/10 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=10/10 RA 1064 . NC_000913 3808241 0 T C consensus_score=65.5 deleted=1 frequency=1 major_base=C major_cov=10/10 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=10/10 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=10/10 RA 1065 . NC_000913 3808254 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=24.1 deleted=1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=7/2 major_frequency=9.000e-01 minor_base=A minor_cov=1/0 new_cov=7/2 polymorphism_frequency=9.000e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=8/2 RA 1066 . NC_000913 3808264 0 A G consensus_score=30.9 deleted=1 frequency=1 major_base=G major_cov=8/2 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=8/2 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=8/2 RA 1067 . NC_000913 3808731 0 A G consensus_score=235.8 frequency=1 major_base=G major_cov=39/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/26 RA 1068 . NC_000913 3808785 0 A T consensus_score=228.4 frequency=1 major_base=T major_cov=40/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/29 RA 1069 . NC_000913 3808866 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=228.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=43/25 major_frequency=9.855e-01 minor_base=A minor_cov=1/0 new_cov=43/25 polymorphism_frequency=9.855e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/25 RA 1070 . NC_000913 3808878 0 A G consensus_score=232.1 frequency=1 major_base=G major_cov=45/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/24 RA 1071 . NC_000913 3809082 0 T C consensus_score=230.1 frequency=1 major_base=C major_cov=34/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/31 RA 1072 . NC_000913 3809085 0 G C bias_e_value=4641650 bias_p_value=1 consensus_score=216.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=32/31 major_frequency=9.844e-01 minor_base=A minor_cov=1/0 new_cov=32/31 polymorphism_frequency=9.844e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/31 RA 1073 . NC_000913 3809136 0 T C bias_e_value=3471740 bias_p_value=0.747954 consensus_score=246.0 fisher_strand_p_value=0.380282 frequency=1 ks_quality_p_value=1 major_base=C major_cov=26/44 major_frequency=9.859e-01 minor_base=A minor_cov=1/0 new_cov=26/44 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/44 RA 1074 . NC_000913 3809142 0 G A consensus_score=243.2 frequency=1 major_base=A major_cov=26/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/44 RA 1075 . NC_000913 3809352 0 G A consensus_score=222.3 frequency=1 major_base=A major_cov=33/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/33 RA 1076 . NC_000913 3809376 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=225.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/32 major_frequency=9.846e-01 minor_base=C minor_cov=0/1 new_cov=32/32 polymorphism_frequency=9.846e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=32/33 RA 1077 . NC_000913 3809454 0 T G consensus_score=235.9 frequency=1 major_base=G major_cov=42/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/23 RA 1078 . NC_000913 3809487 0 T C consensus_score=283.7 frequency=1 major_base=C major_cov=52/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/27 RA 1079 . NC_000913 3809664 0 T G bias_e_value=3753930 bias_p_value=0.808749 consensus_score=240.1 fisher_strand_p_value=0.449275 frequency=1 ks_quality_p_value=1 major_base=G major_cov=38/30 major_frequency=9.855e-01 minor_base=T minor_cov=0/1 new_cov=38/30 polymorphism_frequency=9.855e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=38/31 RA 1080 . NC_000913 3809665 0 A T consensus_score=247.2 frequency=1 major_base=T major_cov=38/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/31 RA 1081 . NC_000913 3809905 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=235.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=31/38 major_frequency=9.857e-01 minor_base=G minor_cov=0/1 new_cov=31/38 polymorphism_frequency=9.857e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=31/39 RA 1082 . NC_000913 3809982 0 C A consensus_score=242.7 frequency=1 major_base=A major_cov=38/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/33 RA 1083 . NC_000913 3809983 0 A G consensus_score=252.1 frequency=1 major_base=G major_cov=38/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/33 RA 1084 . NC_000913 3810043 0 A G consensus_score=226.5 frequency=1 major_base=G major_cov=38/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/25 RA 1085 . NC_000913 3810106 0 A G consensus_score=214.3 frequency=1 major_base=G major_cov=38/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/25 RA 1086 . NC_000913 3810430 0 A G bias_e_value=3791220 bias_p_value=0.816783 consensus_score=258.9 fisher_strand_p_value=0.459459 frequency=1 ks_quality_p_value=1 major_base=G major_cov=33/40 major_frequency=9.865e-01 minor_base=T minor_cov=1/0 new_cov=33/40 polymorphism_frequency=9.865e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/40 RA 1087 . NC_000913 3810460 0 A C consensus_score=265.6 frequency=1 major_base=C major_cov=32/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/42 RA 1088 . NC_000913 3810772 0 G A consensus_score=236.0 frequency=1 major_base=A major_cov=31/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/35 RA 1089 . NC_000913 3810774 0 T C consensus_score=239.4 frequency=1 major_base=C major_cov=33/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/35 RA 1090 . NC_000913 3810781 0 A G consensus_score=259.4 frequency=1 major_base=G major_cov=41/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/33 RA 1091 . NC_000913 3810784 0 A G consensus_score=267.4 frequency=1 major_base=G major_cov=41/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/33 RA 1092 . NC_000913 3810853 0 G A consensus_score=224.1 frequency=1 major_base=A major_cov=48/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/24 RA 1093 . NC_000913 3810937 0 T C bias_e_value=2876960 bias_p_value=0.619814 consensus_score=270.9 fisher_strand_p_value=0.267181 frequency=1 ks_quality_p_value=1 major_base=C major_cov=52/38 major_frequency=9.677e-01 minor_base=A minor_cov=3/0 new_cov=52/38 polymorphism_frequency=9.677e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/38 RA 1094 . NC_000913 3811075 0 T C bias_e_value=3680820 bias_p_value=0.792998 consensus_score=332.4 fisher_strand_p_value=0.430108 frequency=1 ks_quality_p_value=1 major_base=C major_cov=53/39 major_frequency=9.892e-01 minor_base=T minor_cov=0/1 new_cov=53/39 polymorphism_frequency=9.892e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=54/40 RA 1095 . NC_000913 3811120 0 G A consensus_score=347.9 frequency=1 major_base=A major_cov=54/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/46 RA 1096 . NC_000913 3811179 0 G A consensus_score=301.9 frequency=1 major_base=A major_cov=44/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/44 RA 1097 . NC_000913 3811231 0 T C consensus_score=307.9 frequency=1 major_base=C major_cov=44/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/45 RA 1098 . NC_000913 3812146 0 C G consensus_score=346.2 frequency=1 major_base=G major_cov=34/64 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/64 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/64 RA 1099 . NC_000913 3812170 0 G T bias_e_value=3973070 bias_p_value=0.855961 consensus_score=332.3 fisher_strand_p_value=0.513816 frequency=1 ks_quality_p_value=1 major_base=T major_cov=42/60 major_frequency=9.808e-01 minor_base=G minor_cov=0/2 new_cov=42/60 polymorphism_frequency=9.808e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=42/62 RA 1100 . NC_000913 3812238 0 T G consensus_score=366.4 frequency=1 major_base=G major_cov=38/64 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/64 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/64 RA 1101 . NC_000913 3812296 0 C T consensus_score=313.2 frequency=1 major_base=T major_cov=48/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/44 RA 1102 . NC_000913 3812338 0 C T consensus_score=280.0 frequency=1 major_base=T major_cov=42/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/42 RA 1103 . NC_000913 3812356 0 G A consensus_score=301.3 frequency=1 major_base=A major_cov=40/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/43 RA 1104 . NC_000913 3812547 0 A C consensus_score=262.9 frequency=1 major_base=C major_cov=38/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/36 RA 1105 . NC_000913 3812601 0 T C consensus_score=267.3 frequency=1 major_base=C major_cov=37/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/38 RA 1106 . NC_000913 3812637 0 C T consensus_score=251.0 frequency=1 major_base=T major_cov=42/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/35 RA 1107 . NC_000913 3812729 0 T A consensus_score=279.5 frequency=1 major_base=A major_cov=41/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/37 RA 1108 . NC_000913 3812920 0 C T consensus_score=189.6 frequency=1 major_base=T major_cov=24/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/32 RA 1109 . NC_000913 3813207 0 T A consensus_score=206.6 frequency=1 major_base=A major_cov=35/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/30 RA 1110 . NC_000913 3813216 0 T C consensus_score=230.7 frequency=1 major_base=C major_cov=34/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/30 RA 1111 . NC_000913 3813258 0 G A consensus_score=192.1 frequency=1 major_base=A major_cov=33/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/26 RA 1112 . NC_000913 3813264 0 G T consensus_score=208.1 frequency=1 major_base=T major_cov=33/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/26 RA 1113 . NC_000913 3813342 0 G C bias_e_value=3949750 bias_p_value=0.850936 consensus_score=183.5 fisher_strand_p_value=0.506352 frequency=1 ks_quality_p_value=1 major_base=C major_cov=32/24 major_frequency=9.655e-01 minor_base=A minor_cov=2/0 new_cov=32/24 polymorphism_frequency=9.655e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/24 RA 1114 . NC_000913 3813594 0 G A bias_e_value=3918240 bias_p_value=0.844149 consensus_score=266.4 fisher_strand_p_value=0.496519 frequency=1 ks_quality_p_value=1 major_base=A major_cov=41/37 major_frequency=9.750e-01 minor_base=G minor_cov=2/0 new_cov=41/37 polymorphism_frequency=9.750e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=43/37 RA 1115 . NC_000913 3814040 0 A G consensus_score=274.9 frequency=1 major_base=G major_cov=21/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/55 RA 1116 . NC_000913 3814231 0 G T consensus_score=231.0 frequency=1 major_base=T major_cov=35/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/34 RA 1117 . NC_000913 3814661 0 C T consensus_score=274.6 frequency=1 major_base=T major_cov=39/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/41 RA 1118 . NC_000913 3814718 0 C T consensus_score=245.3 frequency=1 major_base=T major_cov=34/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/38 RA 1119 . NC_000913 3814904 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=293.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=46/36 major_frequency=9.880e-01 minor_base=C minor_cov=1/0 new_cov=46/36 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=47/36 RA 1120 . NC_000913 3815024 0 A G consensus_score=281.6 frequency=1 major_base=G major_cov=46/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/35 RA 1121 . NC_000913 3815292 0 G C bias_e_value=3471740 bias_p_value=0.747954 consensus_score=236.4 fisher_strand_p_value=0.380282 frequency=1 ks_quality_p_value=1 major_base=C major_cov=26/44 major_frequency=9.859e-01 minor_base=A minor_cov=1/0 new_cov=26/44 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/44 RA 1122 . NC_000913 3815307 0 G A consensus_score=218.6 frequency=1 major_base=A major_cov=28/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/40 RA 1123 . NC_000913 3815319 0 C T consensus_score=224.2 frequency=1 major_base=T major_cov=23/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/41 RA 1124 . NC_000913 3815883 1 . C bias_e_value=3967560 bias_p_value=0.854774 consensus_score=297.8 fisher_strand_p_value=0.512335 frequency=1 ks_quality_p_value=0.999419 major_base=C major_cov=34/48 major_frequency=9.762e-01 minor_base=. minor_cov=0/2 new_cov=34/48 polymorphism_frequency=9.762e-01 polymorphism_score=-0.5 prediction=consensus ref_cov=0/2 total_cov=34/50 RA 1125 . NC_000913 3815893 0 A C consensus_score=301.7 frequency=1 major_base=C major_cov=35/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/50 RA 1126 . NC_000913 3815903 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=287.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=34/49 major_frequency=9.881e-01 minor_base=T minor_cov=0/1 new_cov=34/49 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/50 RA 1127 . NC_000913 3816007 0 A T consensus_score=230.4 frequency=1 major_base=T major_cov=28/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/43 RA 1128 . NC_000913 3816036 0 C T consensus_score=223.3 frequency=1 major_base=T major_cov=30/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/38 RA 1129 . NC_000913 3816037 0 C T consensus_score=222.9 frequency=1 major_base=T major_cov=30/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/38 RA 1130 . NC_000913 3816043 0 G A consensus_score=245.6 frequency=1 major_base=A major_cov=30/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/38 RA 1131 . NC_000913 3816049 0 C T consensus_score=220.4 frequency=1 major_base=T major_cov=30/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/38 RA 1132 . NC_000913 3816055 0 T A consensus_score=221.6 frequency=1 major_base=A major_cov=28/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/34 RA 1133 . NC_000913 3816067 0 T C consensus_score=213.1 frequency=1 major_base=C major_cov=26/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/34 RA 1134 . NC_000913 3816088 0 C T consensus_score=196.2 frequency=1 major_base=T major_cov=26/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/36 RA 1135 . NC_000913 3816137 0 A G consensus_score=201.7 frequency=1 major_base=G major_cov=26/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/32 RA 1136 . NC_000913 3816148 0 G A bias_e_value=3872630 bias_p_value=0.834322 consensus_score=201.0 fisher_strand_p_value=0.482759 frequency=1 ks_quality_p_value=1 major_base=A major_cov=27/30 major_frequency=9.828e-01 minor_base=C minor_cov=1/0 new_cov=27/30 polymorphism_frequency=9.828e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/30 RA 1137 . NC_000913 3816166 0 C A consensus_score=205.5 frequency=1 major_base=A major_cov=27/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/31 RA 1138 . NC_000913 3816259 0 A T bias_e_value=3641850 bias_p_value=0.784602 consensus_score=235.4 fisher_strand_p_value=0.42029 frequency=1 ks_quality_p_value=1 major_base=T major_cov=40/28 major_frequency=9.855e-01 minor_base=G minor_cov=0/1 new_cov=40/28 polymorphism_frequency=9.855e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/29 RA 1139 . NC_000913 3816316 0 C T consensus_score=217.5 frequency=1 major_base=T major_cov=36/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/27 RA 1140 . NC_000913 3816349 0 T C consensus_score=254.9 frequency=1 major_base=C major_cov=41/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/32 RA 1141 . NC_000913 3816358 0 G A consensus_score=249.6 frequency=1 major_base=A major_cov=42/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/32 RA 1142 . NC_000913 3816406 0 C A bias_e_value=3618910 bias_p_value=0.779661 consensus_score=266.8 fisher_strand_p_value=0.414634 frequency=1 ks_quality_p_value=1 major_base=A major_cov=48/33 major_frequency=9.878e-01 minor_base=G minor_cov=0/1 new_cov=48/33 polymorphism_frequency=9.878e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/34 RA 1143 . NC_000913 3816439 0 C T consensus_score=307.6 frequency=1 major_base=T major_cov=51/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/35 RA 1144 . NC_000913 3817090 0 G A consensus_score=226.0 frequency=1 major_base=A major_cov=38/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/32 RA 1145 . NC_000913 3817224 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=256.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=38/39 major_frequency=9.872e-01 minor_base=G minor_cov=0/1 new_cov=38/39 polymorphism_frequency=9.872e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=38/40 RA 1146 . NC_000913 3817227 0 T C consensus_score=279.6 frequency=1 major_base=C major_cov=38/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/40 RA 1147 . NC_000913 3817228 0 C T consensus_score=269.6 frequency=1 major_base=T major_cov=38/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/40 RA 1148 . NC_000913 3817257 0 G T consensus_score=287.7 frequency=1 major_base=T major_cov=43/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/37 RA 1149 . NC_000913 3817260 0 A G consensus_score=279.9 frequency=1 major_base=G major_cov=43/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/37 RA 1150 . NC_000913 3817261 0 C T consensus_score=284.2 frequency=1 major_base=T major_cov=43/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/37 RA 1151 . NC_000913 3817287 0 A G consensus_score=279.7 frequency=1 major_base=G major_cov=44/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/35 RA 1152 . NC_000913 3817288 0 C T consensus_score=283.5 frequency=1 major_base=T major_cov=44/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/35 RA 1153 . NC_000913 3817332 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=346.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=52/43 major_frequency=9.896e-01 minor_base=A minor_cov=1/0 new_cov=52/43 polymorphism_frequency=9.896e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/43 RA 1154 . NC_000913 3817350 0 C T consensus_score=346.4 frequency=1 major_base=T major_cov=55/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/43 RA 1155 . NC_000913 3817359 0 C G consensus_score=334.1 frequency=1 major_base=G major_cov=55/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/40 RA 1156 . NC_000913 3817386 0 G C bias_e_value=4641650 bias_p_value=1 consensus_score=291.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=47/37 major_frequency=9.882e-01 minor_base=A minor_cov=1/0 new_cov=47/37 polymorphism_frequency=9.882e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/37 RA 1157 . NC_000913 3817404 0 T C consensus_score=317.1 frequency=1 major_base=C major_cov=50/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/38 RA 1158 . NC_000913 3817482 0 C G bias_e_value=4641220 bias_p_value=0.999906 consensus_score=344.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.986348 major_base=G major_cov=50/46 major_frequency=9.897e-01 minor_base=T minor_cov=1/0 new_cov=50/46 polymorphism_frequency=9.897e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=0/0 total_cov=51/46 RA 1159 . NC_000913 3817485 0 C T consensus_score=342.5 frequency=1 major_base=T major_cov=51/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/47 RA 1160 . NC_000913 3817530 0 C T bias_e_value=3857330 bias_p_value=0.831026 consensus_score=315.2 fisher_strand_p_value=0.478261 frequency=1 ks_quality_p_value=1 major_base=T major_cov=48/43 major_frequency=9.891e-01 minor_base=G minor_cov=0/1 new_cov=48/43 polymorphism_frequency=9.891e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/44 RA 1161 . NC_000913 3817533 0 C T consensus_score=328.6 frequency=1 major_base=T major_cov=48/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/44 RA 1162 . NC_000913 3817536 0 A G consensus_score=329.0 frequency=1 major_base=G major_cov=48/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/44 RA 1163 . NC_000913 3817548 0 G A consensus_score=304.2 frequency=1 major_base=A major_cov=46/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/43 RA 1164 . NC_000913 3817550 0 C T consensus_score=302.3 frequency=1 major_base=T major_cov=46/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/43 RA 1165 . NC_000913 3817565 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=287.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=44/43 major_frequency=9.886e-01 minor_base=C minor_cov=1/0 new_cov=44/43 polymorphism_frequency=9.886e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=45/43 RA 1166 . NC_000913 3817583 1 . C consensus_score=278.3 frequency=1 major_base=C major_cov=38/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/40 RA 1167 . NC_000913 3817618 0 A . consensus_score=322.7 frequency=1 major_base=. major_cov=33/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/35 RA 1168 . NC_000913 3817739 0 T C consensus_score=88.6 deleted=1 frequency=1 major_base=C major_cov=8/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=8/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=8/18 RA 1169 . NC_000913 3817789 0 G A consensus_score=21.9 deleted=1 frequency=1 major_base=A major_cov=4/5 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=4/5 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=4/5 RA 1170 . NC_000913 3818062 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=135.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=19/20 major_frequency=9.750e-01 minor_base=G minor_cov=0/1 new_cov=19/20 polymorphism_frequency=9.750e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/21 RA 1171 . NC_000913 3818077 0 G A consensus_score=143.0 frequency=1 major_base=A major_cov=20/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/23 RA 1172 . NC_000913 3818113 0 T G consensus_score=179.2 frequency=1 major_base=G major_cov=26/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/25 RA 1173 . NC_000913 3818128 0 A T bias_e_value=3834650 bias_p_value=0.82614 consensus_score=186.2 fisher_strand_p_value=0.471698 frequency=1 ks_quality_p_value=1 major_base=T major_cov=28/24 major_frequency=9.811e-01 minor_base=C minor_cov=0/1 new_cov=28/24 polymorphism_frequency=9.811e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/25 RA 1174 . NC_000913 3818131 0 T C bias_e_value=4641560 bias_p_value=0.99998 consensus_score=185.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99373 major_base=C major_cov=28/25 major_frequency=9.815e-01 minor_base=T minor_cov=1/0 new_cov=28/25 polymorphism_frequency=9.815e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/0 total_cov=29/25 RA 1175 . NC_000913 3818133 0 A G bias_e_value=4552780 bias_p_value=0.980854 consensus_score=155.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.810808 major_base=G major_cov=28/24 major_frequency=9.811e-01 minor_base=A minor_cov=1/0 new_cov=28/24 polymorphism_frequency=9.811e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/0 total_cov=29/25 RA 1176 . NC_000913 3818161 0 G T consensus_score=247.0 frequency=1 major_base=T major_cov=30/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/42 RA 1177 . NC_000913 3818176 0 G A consensus_score=261.1 frequency=1 major_base=A major_cov=30/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/50 RA 1178 . NC_000913 3818212 0 A G bias_e_value=4641640 bias_p_value=0.999998 consensus_score=313.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997805 major_base=G major_cov=33/57 major_frequency=9.890e-01 minor_base=A minor_cov=0/1 new_cov=33/57 polymorphism_frequency=9.890e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=0/1 total_cov=33/58 RA 1179 . NC_000913 3818226 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=352.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=35/63 major_frequency=9.899e-01 minor_base=T minor_cov=0/1 new_cov=35/63 polymorphism_frequency=9.899e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=35/64 RA 1180 . NC_000913 3818238 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=343.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=36/66 major_frequency=9.903e-01 minor_base=G minor_cov=0/1 new_cov=36/66 polymorphism_frequency=9.903e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/67 RA 1181 . NC_000913 3818239 0 T C consensus_score=368.8 frequency=1 major_base=C major_cov=36/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/67 RA 1182 . NC_000913 3818271 0 A G bias_e_value=2166490 bias_p_value=0.46675 consensus_score=393.0 fisher_strand_p_value=0.167481 frequency=1 ks_quality_p_value=1 major_base=G major_cov=38/71 major_frequency=9.561e-01 minor_base=T minor_cov=0/5 new_cov=38/71 polymorphism_frequency=9.561e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/76 RA 1183 . NC_000913 3818302 0 T C consensus_score=397.0 frequency=1 major_base=C major_cov=44/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/65 RA 1184 . NC_000913 3818305 0 T C consensus_score=386.6 frequency=1 major_base=C major_cov=41/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/65 RA 1185 . NC_000913 3818331 0 A G consensus_score=370.4 frequency=1 major_base=G major_cov=41/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/65 RA 1186 . NC_000913 3818374 0 T G consensus_score=410.4 frequency=1 major_base=G major_cov=49/64 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/64 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/64 RA 1187 . NC_000913 3818443 0 A T consensus_score=348.7 frequency=1 major_base=T major_cov=47/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/54 RA 1188 . NC_000913 3818446 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=347.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=47/52 major_frequency=9.900e-01 minor_base=C minor_cov=0/1 new_cov=47/52 polymorphism_frequency=9.900e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=47/53 RA 1189 . NC_000913 3818468 0 C A bias_e_value=3959480 bias_p_value=0.853034 consensus_score=431.0 fisher_strand_p_value=0.509448 frequency=1 ks_quality_p_value=1 major_base=A major_cov=73/54 major_frequency=9.845e-01 minor_base=C minor_cov=2/0 new_cov=73/54 polymorphism_frequency=9.845e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=75/54 RA 1190 . NC_000913 3818617 0 C T consensus_score=491.2 frequency=1 major_base=T major_cov=87/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=87/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=87/52 RA 1191 . NC_000913 3818636 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=478.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=82/57 major_frequency=9.929e-01 minor_base=C minor_cov=1/0 new_cov=82/57 polymorphism_frequency=9.929e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=83/57 RA 1192 . NC_000913 3818647 0 A G consensus_score=525.1 frequency=1 major_base=G major_cov=88/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=88/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=88/58 RA 1193 . NC_000913 3818666 0 T C bias_e_value=4025170 bias_p_value=0.867185 consensus_score=472.8 fisher_strand_p_value=0.531104 frequency=1 ks_quality_p_value=1 major_base=C major_cov=87/52 major_frequency=9.858e-01 minor_base=T minor_cov=2/0 new_cov=87/52 polymorphism_frequency=9.858e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=89/52 RA 1194 . NC_000913 3818683 1 . C bias_e_value=187426 bias_p_value=0.0403792 consensus_score=435.8 fisher_strand_p_value=0.00672825 frequency=1 ks_quality_p_value=1 major_base=C major_cov=70/52 major_frequency=9.173e-01 minor_base=. minor_cov=11/0 new_cov=70/52 polymorphism_frequency=9.173e-01 polymorphism_score=29.1 prediction=consensus ref_cov=11/0 total_cov=84/52 RA 1195 . NC_000913 3818683 2 . A bias_e_value=59641 bias_p_value=0.0128491 consensus_score=383.9 fisher_strand_p_value=0.001766 frequency=1 ks_quality_p_value=0.990035 major_base=A major_cov=71/52 major_frequency=9.044e-01 minor_base=. minor_cov=13/0 new_cov=71/52 polymorphism_frequency=9.044e-01 polymorphism_score=41.5 prediction=consensus ref_cov=13/0 total_cov=84/52 RA 1196 . NC_000913 3818691 0 G A bias_e_value=2077500 bias_p_value=0.447578 consensus_score=437.7 fisher_strand_p_value=0.156941 frequency=1 ks_quality_p_value=1 major_base=A major_cov=82/52 major_frequency=9.640e-01 minor_base=C minor_cov=5/0 new_cov=82/52 polymorphism_frequency=9.640e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=88/52 RA 1197 . NC_000913 3818749 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=420.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=65/65 major_frequency=9.848e-01 minor_base=C minor_cov=1/1 new_cov=65/65 polymorphism_frequency=9.848e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/1 total_cov=66/66 RA 1198 . NC_000913 3818750 0 T C bias_e_value=3917150 bias_p_value=0.843913 consensus_score=460.3 fisher_strand_p_value=0.496183 frequency=1 ks_quality_p_value=1 major_base=C major_cov=64/65 major_frequency=9.847e-01 minor_base=A minor_cov=2/0 new_cov=64/65 polymorphism_frequency=9.847e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=66/66 RA 1199 . NC_000913 3818797 0 C T consensus_score=443.1 frequency=1 major_base=T major_cov=60/73 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/73 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/73 RA 1200 . NC_000913 3818801 0 C A bias_e_value=3760790 bias_p_value=0.810228 consensus_score=432.4 fisher_strand_p_value=0.451128 frequency=1 ks_quality_p_value=1 major_base=A major_cov=59/73 major_frequency=9.925e-01 minor_base=G minor_cov=1/0 new_cov=59/73 polymorphism_frequency=9.925e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/73 RA 1201 . NC_000913 3818828 0 G A bias_e_value=1843350 bias_p_value=0.397133 consensus_score=435.0 fisher_strand_p_value=0.130935 frequency=1 ks_quality_p_value=1 major_base=A major_cov=45/82 major_frequency=9.845e-01 minor_base=C minor_cov=2/0 new_cov=45/82 polymorphism_frequency=9.845e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=48/82 RA 1202 . NC_000913 3818930 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=425.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=48/80 major_frequency=9.922e-01 minor_base=G minor_cov=0/1 new_cov=48/80 polymorphism_frequency=9.922e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=48/81 RA 1203 . NC_000913 3818942 0 A G bias_e_value=3304710 bias_p_value=0.711969 consensus_score=390.9 fisher_strand_p_value=0.344828 frequency=1 ks_quality_p_value=1 major_base=G major_cov=39/76 major_frequency=9.914e-01 minor_base=A minor_cov=1/0 new_cov=39/76 polymorphism_frequency=9.914e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=40/77 RA 1204 . NC_000913 3818948 0 G C consensus_score=425.5 frequency=1 major_base=C major_cov=41/77 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/77 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/77 RA 1205 . NC_000913 3819158 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=279.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=42/42 major_frequency=9.882e-01 minor_base=G minor_cov=0/1 new_cov=42/42 polymorphism_frequency=9.882e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/43 RA 1206 . NC_000913 3819185 0 G C consensus_score=243.8 frequency=1 major_base=C major_cov=37/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/33 RA 1207 . NC_000913 3819584 0 T C consensus_score=267.2 frequency=1 major_base=C major_cov=36/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/37 RA 1208 . NC_000913 3819833 0 T C bias_e_value=3603820 bias_p_value=0.776409 consensus_score=253.6 fisher_strand_p_value=0.410959 frequency=1 ks_quality_p_value=1 major_base=C major_cov=29/43 major_frequency=9.863e-01 minor_base=T minor_cov=1/0 new_cov=29/43 polymorphism_frequency=9.863e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=30/43 RA 1209 . NC_000913 3819866 0 A G bias_e_value=3613590 bias_p_value=0.778514 consensus_score=263.4 fisher_strand_p_value=0.413333 frequency=1 ks_quality_p_value=1 major_base=G major_cov=30/44 major_frequency=9.867e-01 minor_base=A minor_cov=1/0 new_cov=30/44 polymorphism_frequency=9.867e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=31/44 RA 1210 . NC_000913 3820036 0 C T consensus_score=227.1 frequency=1 major_base=T major_cov=33/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/34 RA 1211 . NC_000913 3820223 0 T C consensus_score=254.2 frequency=1 major_base=C major_cov=43/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/29 RA 1212 . NC_000913 3821143 0 C T consensus_score=333.7 frequency=1 major_base=T major_cov=52/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/45 RA 1213 . NC_000913 3821188 0 A G consensus_score=359.2 frequency=1 major_base=G major_cov=49/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/53 RA 1214 . NC_000913 3843750 0 C A bias_e_value=21.5055 bias_p_value=4.63316e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=243.8 fisher_strand_p_value=2.88517e-07 frequency=2.308e-01 ks_quality_p_value=1 major_base=C major_cov=63/47 major_frequency=7.692e-01 minor_base=A minor_cov=33/0 new_cov=33/0 polymorphism_frequency=2.308e-01 polymorphism_score=12.2 prediction=polymorphism ref_cov=63/47 total_cov=96/47 RA 1215 . NC_000913 3877783 0 C T consensus_score=233.9 frequency=1 major_base=T major_cov=27/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/40 RA 1216 . NC_000913 3890364 0 C T consensus_score=311.4 frequency=1 major_base=T major_cov=42/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/48 RA 1217 . NC_000913 3911533 0 C A bias_e_value=1.76745e-07 bias_p_value=3.8078e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=166.2 fisher_strand_p_value=1.07359e-15 frequency=4.069e-01 ks_quality_p_value=1 major_base=C major_cov=36/50 major_frequency=5.931e-01 minor_base=A minor_cov=59/0 new_cov=59/0 polymorphism_frequency=4.069e-01 polymorphism_score=36.1 prediction=polymorphism ref_cov=36/50 total_cov=95/50 RA 1218 . NC_000913 3937909 0 G A bias_e_value=3756620 bias_p_value=0.809328 consensus_score=265.4 fisher_strand_p_value=0.45 frequency=1 ks_quality_p_value=1 major_base=A major_cov=35/44 major_frequency=9.875e-01 minor_base=C minor_cov=1/0 new_cov=35/44 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/44 RA 1219 . NC_000913 3937997 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=269.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=46/35 major_frequency=9.878e-01 minor_base=G minor_cov=1/0 new_cov=46/35 polymorphism_frequency=9.878e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=47/35 RA 1220 . NC_000913 3938441 0 C . bias_e_value=3531570 bias_p_value=0.760844 consensus_score=439.6 fisher_strand_p_value=0.43299 frequency=1 ks_quality_p_value=0.909631 major_base=. major_cov=41/55 major_frequency=9.897e-01 minor_base=C minor_cov=1/0 new_cov=41/55 polymorphism_frequency=9.897e-01 polymorphism_score=-0.8 prediction=consensus ref_cov=1/0 total_cov=43/55 RA 1221 . NC_000913 3941874 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=171.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=18/45 major_frequency=9.844e-01 minor_base=G minor_cov=0/1 new_cov=18/45 polymorphism_frequency=9.844e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/46 RA 1222 . NC_000913 3946246 0 G A bias_e_value=4641360 bias_p_value=0.999938 consensus_score=96.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.988881 major_base=A major_cov=25/28 major_frequency=9.815e-01 minor_base=G minor_cov=0/1 new_cov=25/28 polymorphism_frequency=9.815e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/1 total_cov=25/29 RA 1223 . NC_000913 3950099 0 C T bias_e_value=3232170 bias_p_value=0.69634 consensus_score=406.1 fisher_strand_p_value=0.330435 frequency=1 ks_quality_p_value=1 major_base=T major_cov=77/37 major_frequency=9.913e-01 minor_base=G minor_cov=0/1 new_cov=77/37 polymorphism_frequency=9.913e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=77/38 RA 1224 . NC_000913 3956003 0 G A consensus_score=184.1 frequency=1 major_base=A major_cov=30/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/25 RA 1225 . NC_000913 4043253 0 G A consensus_score=339.1 frequency=1 major_base=A major_cov=50/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/53 RA 1226 . NC_000913 4084932 0 G T consensus_score=208.3 frequency=1 major_base=T major_cov=27/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/32 RA 1227 . NC_000913 4123153 0 C A bias_e_value=3.69521 bias_p_value=7.96099e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=187.5 fisher_strand_p_value=4.44003e-08 frequency=2.547e-01 ks_quality_p_value=1 major_base=C major_cov=36/43 major_frequency=7.453e-01 minor_base=A minor_cov=27/0 new_cov=27/0 polymorphism_frequency=2.547e-01 polymorphism_score=10.6 prediction=polymorphism ref_cov=36/43 total_cov=63/43 RA 1228 . NC_000913 4139298 0 G A consensus_score=230.3 frequency=1 major_base=A major_cov=31/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/38 RA 1229 . NC_000913 4160157 0 G A consensus_score=324.3 frequency=1 major_base=A major_cov=55/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/38 RA 1230 . NC_000913 4171728 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=84.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=31/23 major_frequency=9.643e-01 minor_base=C minor_cov=1/1 new_cov=31/23 polymorphism_frequency=9.643e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=1/1 total_cov=32/24 RA 1231 . NC_000913 4171781 0 A G bias_e_value=1198190 bias_p_value=0.258138 consensus_score=116.7 fisher_strand_p_value=0.0707496 frequency=1 ks_quality_p_value=1 major_base=G major_cov=34/22 major_frequency=9.492e-01 minor_base=T minor_cov=0/3 new_cov=34/22 polymorphism_frequency=9.492e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/25 RA 1232 . NC_000913 4193996 0 T G consensus_score=187.6 frequency=1 major_base=G major_cov=27/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/27 RA 1233 . NC_000913 4223638 0 T C bias_e_value=1623910 bias_p_value=0.349856 consensus_score=308.9 fisher_strand_p_value=0.10867 frequency=1 ks_quality_p_value=1 major_base=C major_cov=40/46 major_frequency=9.663e-01 minor_base=A minor_cov=3/0 new_cov=40/46 polymorphism_frequency=9.663e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/46 RA 1234 . NC_000913 4261040 0 C A bias_e_value=0.010649 bias_p_value=2.29423e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=236.3 fisher_strand_p_value=9.52989e-11 frequency=2.602e-01 ks_quality_p_value=1 major_base=C major_cov=36/55 major_frequency=7.398e-01 minor_base=A minor_cov=32/0 new_cov=32/0 polymorphism_frequency=2.602e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=36/55 total_cov=68/55 RA 1235 . NC_000913 4296190 0 A G bias_e_value=3628890 bias_p_value=0.781809 consensus_reject=FREQUENCY_CUTOFF consensus_score=40.3 fisher_strand_p_value=0.417083 frequency=2.667e-01 ks_quality_p_value=1 major_base=A major_cov=13/9 major_frequency=7.333e-01 minor_base=G minor_cov=3/5 new_cov=3/5 polymorphism_frequency=2.667e-01 polymorphism_score=10.0 prediction=polymorphism ref_cov=13/9 total_cov=16/14 RA 1236 . NC_000913 4296191 0 A C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=24.8 fisher_strand_p_value=1 frequency=2.667e-01 ks_quality_p_value=1 major_base=A major_cov=12/10 major_frequency=7.333e-01 minor_base=C minor_cov=4/4 new_cov=4/4 polymorphism_frequency=2.667e-01 polymorphism_score=11.5 prediction=polymorphism ref_cov=12/10 total_cov=16/14 RA 1237 . NC_000913 4296380 1 . C bias_e_value=4638400 bias_p_value=0.999299 consensus_score=234.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.962801 major_base=C major_cov=37/37 major_frequency=9.610e-01 minor_base=T minor_cov=1/2 new_cov=37/37 polymorphism_frequency=9.610e-01 polymorphism_score=0.3 prediction=consensus ref_cov=3/0 total_cov=41/39 RA 1238 . NC_000913 4296380 2 . G bias_e_value=2491960 bias_p_value=0.536868 consensus_score=244.8 fisher_strand_p_value=0.240981 frequency=1 ks_quality_p_value=0.869132 major_base=G major_cov=38/39 major_frequency=9.625e-01 minor_base=. minor_cov=3/0 new_cov=38/39 polymorphism_frequency=9.625e-01 polymorphism_score=5.9 prediction=consensus ref_cov=3/0 total_cov=41/39 RA 1239 . NC_000913 4325644 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=283.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=30/55 major_frequency=9.884e-01 minor_base=G minor_cov=0/1 new_cov=30/55 polymorphism_frequency=9.884e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/56 RA 1240 . NC_000913 4486869 0 T A consensus_score=298.8 frequency=1 major_base=A major_cov=37/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/51 RA 1241 . NC_000913 4510238 0 T G bias_e_value=96988.7 bias_p_value=0.0208953 consensus_score=356.7 fisher_strand_p_value=0.00308073 frequency=1 ks_quality_p_value=1 major_base=G major_cov=59/42 major_frequency=9.352e-01 minor_base=T minor_cov=0/7 new_cov=59/42 polymorphism_frequency=9.352e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=0/7 total_cov=59/49 RA 1242 . NC_000913 4532409 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=313.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=48/38 major_frequency=9.885e-01 minor_base=T minor_cov=1/0 new_cov=48/38 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=49/38 RA 1243 . NC_000913 4546601 0 C T consensus_score=415.4 frequency=1 major_base=T major_cov=61/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/66 RA 1244 . NC_000913 4570611 0 C T bias_e_value=2156610 bias_p_value=0.464622 consensus_score=295.7 fisher_strand_p_value=0.166292 frequency=1 ks_quality_p_value=1 major_base=T major_cov=53/35 major_frequency=9.778e-01 minor_base=C minor_cov=0/2 new_cov=53/35 polymorphism_frequency=9.778e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=53/37 RA 1245 . NC_000913 4577507 0 C T consensus_score=438.0 frequency=1 major_base=T major_cov=62/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/62 RA 1246 . NC_000913 4579610 0 C T consensus_score=268.1 frequency=1 major_base=T major_cov=28/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/53 RA 1247 . NC_000913 4583579 0 C T consensus_score=223.1 frequency=1 major_base=T major_cov=29/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/41 RA 1248 . NC_000913 4588910 0 C T consensus_score=299.1 frequency=1 major_base=T major_cov=39/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/48 RA 1249 . NC_000913 4595093 0 C T consensus_score=324.7 frequency=1 major_base=T major_cov=52/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/42 RA 1250 . NC_000913 4595749 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=314.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=63/25 major_frequency=9.888e-01 minor_base=C minor_cov=1/0 new_cov=63/25 polymorphism_frequency=9.888e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=64/25 RA 1251 . NC_000913 4597626 0 C T bias_e_value=3693870 bias_p_value=0.795808 consensus_score=235.2 fisher_strand_p_value=0.444444 frequency=1 ks_quality_p_value=0.975272 major_base=T major_cov=40/31 major_frequency=9.861e-01 minor_base=G minor_cov=0/1 new_cov=40/31 polymorphism_frequency=9.861e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=41/32 RA 1252 . NC_000913 4608401 0 C T consensus_score=254.0 frequency=1 major_base=T major_cov=30/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/48 RA 1253 . NC_000913 4619114 0 G . consensus_score=310.3 frequency=1 major_base=. major_cov=37/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/28 RA 1254 . NC_000913 4619115 0 C . consensus_score=310.3 frequency=1 major_base=. major_cov=37/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/28 RA 1255 . NC_000913 4619389 0 G T bias_e_value=3896960 bias_p_value=0.839564 consensus_score=273.6 fisher_strand_p_value=0.493827 frequency=1 ks_quality_p_value=0.992314 major_base=T major_cov=41/39 major_frequency=9.877e-01 minor_base=G minor_cov=0/1 new_cov=41/39 polymorphism_frequency=9.877e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=0/1 total_cov=41/40 RA 1256 . NC_000913 4624763 0 C A consensus_score=227.1 frequency=1 major_base=A major_cov=34/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/34 RA 1257 . NC_000913 4627574 0 C T consensus_score=267.0 frequency=1 major_base=T major_cov=45/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/32 RA 1258 . NC_000913 4636925 0 G C consensus_score=234.4 frequency=1 major_base=C major_cov=33/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/32 RA 1259 . NC_000913 4638240 0 G A consensus_score=251.8 frequency=1 major_base=A major_cov=44/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/29 MC 1260 . NC_000913 257908 258683 769 0 left_inside_cov=2 left_outside_cov=144 right_inside_cov=2 right_outside_cov=144 MC 1261 . NC_000913 366181 366273 0 0 left_inside_cov=0 left_outside_cov=96 right_inside_cov=0 right_outside_cov=93 MC 1262 . NC_000913 1196266 1211459 0 0 left_inside_cov=26 left_outside_cov=28 right_inside_cov=24 right_outside_cov=27 MC 1263 . NC_000913 1367750 1367925 0 0 left_inside_cov=0 left_outside_cov=103 right_inside_cov=0 right_outside_cov=103 MC 1264 . NC_000913 1428153 1428442 90 157 left_inside_cov=24 left_outside_cov=27 right_inside_cov=26 right_outside_cov=29 MC 1265 . NC_000913 1632784 1633402 63 174 left_inside_cov=26 left_outside_cov=27 right_inside_cov=25 right_outside_cov=27 MC 1266 . NC_000913 1978495 1979270 0 767 left_inside_cov=0 left_outside_cov=62 right_inside_cov=0 right_outside_cov=126 MC 1267 . NC_000913 2558699 2565488 0 0 left_inside_cov=0 left_outside_cov=52 right_inside_cov=2 right_outside_cov=54 MC 1268 . NC_000913 3423829 3426677 403 2022 left_inside_cov=26 left_outside_cov=28 right_inside_cov=26 right_outside_cov=28 MC 1269 . NC_000913 3792656 3793938 0 0 left_inside_cov=0 left_outside_cov=87 right_inside_cov=0 right_outside_cov=89 MC 1270 . NC_000913 3796795 3807991 0 0 left_inside_cov=24 left_outside_cov=27 right_inside_cov=25 right_outside_cov=30 MC 1271 . NC_000913 3808231 3808560 0 0 left_inside_cov=20 left_outside_cov=30 right_inside_cov=26 right_outside_cov=27 MC 1272 . NC_000913 3817739 3818018 0 0 left_inside_cov=26 left_outside_cov=28 right_inside_cov=25 right_outside_cov=27 JC 1273 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 coverage_minus=53 coverage_plus=52 flanking_left=300 flanking_right=300 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=295 key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0 max_left=287 max_left_minus=287 max_left_plus=275 max_min_left=148 max_min_left_minus=148 max_min_left_plus=135 max_min_right=147 max_min_right_minus=147 max_min_right_plus=144 max_pos_hash_score=590 max_right=287 max_right_minus=287 max_right_plus=284 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.25 new_junction_read_count=107 polymorphism_frequency=1.000e+00 pos_hash_score=63 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=105 JC 1274 . NC_000913 223680 -1 NC_000913 223949 1 0 alignment_overlap=1 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.583e-02 junction_possible_overlap_registers=294 key=NC_000913__223680__-1__NC_000913__223948__1__1____300__300__0__1 max_left=212 max_left_minus=212 max_left_plus=206 max_min_left=120 max_min_left_minus=0 max_min_left_plus=120 max_min_right=88 max_min_right_minus=86 max_min_right_plus=88 max_pos_hash_score=588 max_right=179 max_right_minus=86 max_right_plus=179 neg_log10_pos_hash_p_value=8.2 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=3.583e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.94 side_1_overlap=1 side_1_possible_overlap_registers=295 side_1_read_count=81 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=3 JC 1275 . NC_000913 226010 -1 NC_000913 2728691 -1 0 alignment_overlap=7 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.309e-02 junction_possible_overlap_registers=288 key=NC_000913__226010__-1__NC_000913__2728698__-1__7____300__300__0__1 max_left=125 max_left_minus=125 max_left_plus=78 max_min_left=125 max_min_left_minus=125 max_min_left_plus=78 max_min_right=1 max_min_right_minus=1 max_min_right_plus=0 max_pos_hash_score=576 max_right=215 max_right_minus=168 max_right_plus=215 neg_log10_pos_hash_p_value=8.1 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=2.309e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.52 side_1_overlap=7 side_1_possible_overlap_registers=295 side_1_read_count=130 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=3 JC 1276 . NC_000913 249545 -1 NC_000913 373870 1 0 alignment_overlap=7 coverage_minus=32 coverage_plus=34 flanking_left=300 flanking_right=300 frequency=4.600e-01 junction_possible_overlap_registers=288 key=NC_000913__249545__-1__NC_000913__373863__1__7____300__300__0__0 max_left=289 max_left_minus=288 max_left_plus=289 max_min_left=140 max_min_left_minus=140 max_min_left_plus=133 max_min_right=145 max_min_right_minus=145 max_min_right_plus=145 max_pos_hash_score=576 max_right=278 max_right_minus=268 max_right_plus=278 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.80 new_junction_read_count=67 polymorphism_frequency=4.600e-01 pos_hash_score=48 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.83 side_1_overlap=7 side_1_possible_overlap_registers=295 side_1_read_count=71 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.05 side_2_overlap=0 side_2_possible_overlap_registers=288 side_2_read_count=88 side_2_redundant=0 total_non_overlap_reads=66 JC 1277 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=57 coverage_plus=81 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=287 key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0 max_left=282 max_left_minus=278 max_left_plus=282 max_min_left=139 max_min_left_minus=89 max_min_left_plus=139 max_min_right=144 max_min_right_minus=143 max_min_right_plus=144 max_pos_hash_score=574 max_right=289 max_right_minus=289 max_right_plus=279 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.70 new_junction_read_count=142 polymorphism_frequency=9.932e-01 pos_hash_score=68 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=8 side_1_possible_overlap_registers=295 side_1_read_count=2 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=138 JC 1278 . NC_000913 270540 1 NC_000913 2101745 1 -50 alignment_overlap=-50 coverage_minus=17 coverage_plus=16 flanking_left=300 flanking_right=300 frequency=NA junction_possible_overlap_registers=245 key=NC_000913__270540__1__NC_000913__2101745__1__-50__CTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTAC__300__300__1__1 max_left=244 max_left_minus=244 max_left_plus=211 max_min_left=123 max_min_left_minus=95 max_min_left_plus=123 max_min_right=120 max_min_right_minus=120 max_min_right_plus=116 max_pos_hash_score=490 max_right=242 max_right_minus=242 max_right_plus=219 neg_log10_pos_hash_p_value=1.5 new_junction_coverage=0.46 new_junction_read_count=33 polymorphism_frequency=NA pos_hash_score=25 prediction=unknown side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=33 unique_read_sequence=CTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTAC JC 1279 . NC_000913 271761 -1 NC_000913 1105782 -1 0 alignment_overlap=4 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.061e-02 junction_possible_overlap_registers=291 key=NC_000913__271761__-1__NC_000913__1105786__-1__4____300__300__0__0 max_left=122 max_left_minus=122 max_left_plus=102 max_min_left=122 max_min_left_minus=122 max_min_left_plus=102 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=582 max_right=244 max_right_minus=174 max_right_plus=244 neg_log10_pos_hash_p_value=8.2 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=3.061e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=4 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.12 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=95 side_2_redundant=0 total_non_overlap_reads=3 JC 1280 . NC_000913 280111 -1 NC_000913 1105782 -1 0 alignment_overlap=8 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.103e-02 junction_possible_overlap_registers=287 key=NC_000913__280115__-1__NC_000913__1105786__-1__8____300__300__0__0 max_left=122 max_left_minus=122 max_left_plus=102 max_min_left=122 max_min_left_minus=122 max_min_left_plus=102 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=574 max_right=240 max_right_minus=170 max_right_plus=240 neg_log10_pos_hash_p_value=8.1 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=3.103e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=4 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.12 side_2_overlap=4 side_2_possible_overlap_registers=291 side_2_read_count=95 side_2_redundant=0 total_non_overlap_reads=3 JC 1281 . NC_000913 291401 -1 NC_000913 1978159 1 0 alignment_overlap=2 coverage_minus=2 coverage_plus=6 flanking_left=300 flanking_right=300 frequency=7.253e-02 junction_possible_overlap_registers=293 key=NC_000913__291403__-1__NC_000913__1978159__1__2____300__300__1__0 max_left=100 max_left_minus=100 max_left_plus=100 max_min_left=100 max_min_left_minus=100 max_min_left_plus=100 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=586 max_right=250 max_right_minus=163 max_right_plus=250 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.09 new_junction_read_count=8 polymorphism_frequency=7.253e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.20 side_2_overlap=2 side_2_possible_overlap_registers=295 side_2_read_count=103 side_2_redundant=0 total_non_overlap_reads=8 JC 1282 . NC_000913 366180 -1 NC_000913 366274 1 0 alignment_overlap=0 coverage_minus=46 coverage_plus=41 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__366180__-1__NC_000913__366274__1__0____300__300__0__0 max_left=294 max_left_minus=286 max_left_plus=294 max_min_left=145 max_min_left_minus=145 max_min_left_plus=139 max_min_right=140 max_min_right_minus=140 max_min_right_plus=136 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=294 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.07 new_junction_read_count=92 polymorphism_frequency=1.000e+00 pos_hash_score=63 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=87 JC 1283 . NC_000913 524357 -1 NC_000913 524805 1 0 alignment_overlap=14 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1.512e-01 junction_possible_overlap_registers=281 key=NC_000913__524357__-1__NC_000913__524791__1__14____300__300__0__0 max_left=168 max_left_minus=168 max_left_plus=166 max_min_left=23 max_min_left_minus=23 max_min_left_plus=23 max_min_right=70 max_min_right_minus=70 max_min_right_plus=70 max_pos_hash_score=562 max_right=235 max_right_minus=134 max_right_plus=235 neg_log10_pos_hash_p_value=6.4 new_junction_coverage=0.07 new_junction_read_count=6 polymorphism_frequency=1.512e-01 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.41 side_1_overlap=14 side_1_possible_overlap_registers=295 side_1_read_count=35 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.42 side_2_overlap=0 side_2_possible_overlap_registers=281 side_2_read_count=34 side_2_redundant=0 total_non_overlap_reads=6 JC 1284 . NC_000913 696469 -1 NC_000913 696802 1 -6 alignment_overlap=-6 coverage_minus=9 coverage_plus=8 flanking_left=300 flanking_right=300 frequency=2.555e-01 junction_possible_overlap_registers=289 key=NC_000913__696469__-1__NC_000913__696802__1__-6__TAGAAT__300__300__0__0 max_left=291 max_left_minus=291 max_left_plus=280 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=124 max_min_right_minus=124 max_min_right_plus=124 max_pos_hash_score=578 max_right=124 max_right_minus=124 max_right_plus=124 neg_log10_pos_hash_p_value=4.2 new_junction_coverage=0.24 new_junction_read_count=20 polymorphism_frequency=2.555e-01 pos_hash_score=13 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.87 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=75 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.51 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=44 side_2_redundant=0 total_non_overlap_reads=17 unique_read_sequence=TAGAAT JC 1285 . NC_000913 732239 -1 NC_000913 3622029 1 0 alignment_overlap=12 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1.825e-01 junction_possible_overlap_registers=283 key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0 max_left=210 max_left_minus=210 max_left_plus=112 max_min_left=112 max_min_left_minus=112 max_min_left_plus=112 max_min_right=63 max_min_right_minus=63 max_min_right_plus=0 max_pos_hash_score=566 max_right=280 max_right_minus=116 max_right_plus=280 neg_log10_pos_hash_p_value=6.4 new_junction_coverage=0.07 new_junction_read_count=6 polymorphism_frequency=1.825e-01 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=12 side_1_possible_overlap_registers=295 side_1_read_count=55 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=283 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=6 JC 1286 . NC_000913 732239 -1 NC_000913 3765020 1 0 alignment_overlap=12 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=1.544e-01 junction_possible_overlap_registers=283 key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0 max_left=210 max_left_minus=210 max_left_plus=112 max_min_left=112 max_min_left_minus=112 max_min_left_plus=112 max_min_right=63 max_min_right_minus=63 max_min_right_plus=0 max_pos_hash_score=566 max_right=116 max_right_minus=116 max_right_plus=116 neg_log10_pos_hash_p_value=6.9 new_junction_coverage=0.06 new_junction_read_count=5 polymorphism_frequency=1.544e-01 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=12 side_1_possible_overlap_registers=295 side_1_read_count=55 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=283 side_2_read_count=2 side_2_redundant=0 total_non_overlap_reads=5 JC 1287 . NC_000913 780554 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=3 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.405e-02 junction_possible_overlap_registers=291 key=NC_000913__780554__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0 max_left=77 max_left_minus=77 max_left_plus=28 max_min_left=77 max_min_left_minus=77 max_min_left_plus=28 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=582 max_right=268 max_right_minus=255 max_right_plus=268 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=4.405e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.19 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=102 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.86 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=74 side_2_redundant=0 total_non_overlap_reads=4 unique_read_sequence=GAAG JC 1288 . NC_000913 781222 -1 NC_000913 781653 1 0 alignment_overlap=76 coverage_minus=8 coverage_plus=7 flanking_left=300 flanking_right=300 frequency=2.697e-01 junction_possible_overlap_registers=219 key=NC_000913__781222__-1__NC_000913__781577__1__76____300__300__0__0 max_left=195 max_left_minus=195 max_left_plus=161 max_min_left=61 max_min_left_minus=50 max_min_left_plus=61 max_min_right=103 max_min_right_minus=103 max_min_right_plus=81 max_pos_hash_score=438 max_right=123 max_right_minus=120 max_right_plus=123 neg_log10_pos_hash_p_value=3.0 new_junction_coverage=0.27 new_junction_read_count=17 polymorphism_frequency=2.697e-01 pos_hash_score=13 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.68 side_1_overlap=76 side_1_possible_overlap_registers=295 side_1_read_count=58 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.77 side_2_overlap=0 side_2_possible_overlap_registers=219 side_2_read_count=49 side_2_redundant=0 total_non_overlap_reads=15 JC 1289 . NC_000913 781369 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=3 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=5.513e-02 junction_possible_overlap_registers=291 key=NC_000913__781369__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0 max_left=77 max_left_minus=77 max_left_plus=28 max_min_left=77 max_min_left_minus=77 max_min_left_plus=28 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=582 max_right=268 max_right_minus=255 max_right_plus=268 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=5.513e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.76 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=65 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.86 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=74 side_2_redundant=0 total_non_overlap_reads=4 unique_read_sequence=GAAG JC 1290 . NC_000913 781369 1 NC_000913 2521006 -1 -3 alignment_overlap=-3 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=9.236e-02 junction_possible_overlap_registers=292 key=NC_000913__781369__1__NC_000913__2521006__-1__-3__GAG__300__300__0__0 max_left=221 max_left_minus=221 max_left_plus=162 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=76 max_min_right_minus=76 max_min_right_plus=8 max_pos_hash_score=584 max_right=76 max_right_minus=76 max_right_plus=8 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.08 new_junction_read_count=7 polymorphism_frequency=9.236e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.76 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=65 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.86 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=74 side_2_redundant=0 total_non_overlap_reads=5 unique_read_sequence=GAG JC 1291 . NC_000913 781369 1 NC_000913 2521128 -1 -1 alignment_overlap=-1 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=1.132e-01 junction_possible_overlap_registers=294 key=NC_000913__781369__1__NC_000913__2521128__-1__-1__G__300__300__0__0 max_left=221 max_left_minus=221 max_left_plus=162 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=78 max_min_right_minus=78 max_min_right_plus=10 max_pos_hash_score=588 max_right=78 max_right_minus=78 max_right_plus=10 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.08 new_junction_read_count=7 polymorphism_frequency=1.132e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.76 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=65 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.52 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=45 side_2_redundant=0 total_non_overlap_reads=5 unique_read_sequence=G JC 1292 . NC_000913 781577 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=7.033e-02 junction_possible_overlap_registers=291 key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0 max_left=101 max_left_minus=77 max_left_plus=101 max_min_left=101 max_min_left_minus=77 max_min_left_plus=101 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=582 max_right=268 max_right_minus=255 max_right_plus=268 neg_log10_pos_hash_p_value=7.1 new_junction_coverage=0.06 new_junction_read_count=5 polymorphism_frequency=7.033e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=60 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.86 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=74 side_2_redundant=0 total_non_overlap_reads=5 unique_read_sequence=GAAG JC 1293 . NC_000913 1105782 -1 NC_000913 1470516 -1 0 alignment_overlap=4 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.040e-02 junction_possible_overlap_registers=291 key=NC_000913__1105786__-1__NC_000913__1470516__-1__4____300__300__0__1 max_left=244 max_left_minus=244 max_left_plus=174 max_min_left=8 max_min_left_minus=0 max_min_left_plus=8 max_min_right=122 max_min_right_minus=102 max_min_right_plus=122 max_pos_hash_score=582 max_right=288 max_right_minus=102 max_right_plus=288 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=4.040e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.12 side_1_overlap=0 side_1_possible_overlap_registers=291 side_1_read_count=95 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=4 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=4 JC 1294 . NC_000913 1251766 -1 NC_000913 1252103 1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.145e-02 junction_possible_overlap_registers=283 key=NC_000913__1251766__-1__NC_000913__1252091__1__12____300__300__0__0 max_left=214 max_left_minus=214 max_left_plus=196 max_min_left=22 max_min_left_minus=22 max_min_left_plus=17 max_min_right=92 max_min_right_minus=64 max_min_right_plus=92 max_pos_hash_score=566 max_right=271 max_right_minus=265 max_right_plus=271 neg_log10_pos_hash_p_value=7.4 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=4.145e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.14 side_1_overlap=12 side_1_possible_overlap_registers=295 side_1_read_count=98 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.11 side_2_overlap=0 side_2_possible_overlap_registers=283 side_2_read_count=91 side_2_redundant=0 total_non_overlap_reads=4 JC 1295 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=65 coverage_plus=54 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=291 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0 max_left=294 max_left_minus=259 max_left_plus=294 max_min_left=139 max_min_left_minus=127 max_min_left_plus=139 max_min_right=144 max_min_right_minus=143 max_min_right_plus=144 max_pos_hash_score=582 max_right=295 max_right_minus=292 max_right_plus=295 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.47 new_junction_read_count=124 polymorphism_frequency=1.000e+00 pos_hash_score=70 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=119 JC 1296 . NC_000913 1367749 -1 NC_000913 1367926 1 0 alignment_overlap=1 coverage_minus=57 coverage_plus=44 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1367749__-1__NC_000913__1367925__1__1____300__300__0__0 max_left=297 max_left_minus=294 max_left_plus=297 max_min_left=135 max_min_left_minus=128 max_min_left_plus=135 max_min_right=141 max_min_right_minus=141 max_min_right_plus=130 max_pos_hash_score=588 max_right=295 max_right_minus=293 max_right_plus=295 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.20 new_junction_read_count=103 polymorphism_frequency=1.000e+00 pos_hash_score=58 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=1 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=101 JC 1297 . NC_000913 1376615 -1 NC_000913 1376985 1 0 alignment_overlap=13 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.596e-02 junction_possible_overlap_registers=282 key=NC_000913__1376615__-1__NC_000913__1376972__1__13____300__300__0__0 max_left=139 max_left_minus=139 max_left_plus=139 max_min_left=121 max_min_left_minus=121 max_min_left_plus=6 max_min_right=115 max_min_right_minus=115 max_min_right_plus=115 max_pos_hash_score=564 max_right=190 max_right_minus=165 max_right_plus=190 neg_log10_pos_hash_p_value=7.4 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=5.596e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.80 side_1_overlap=13 side_1_possible_overlap_registers=295 side_1_read_count=69 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.84 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=69 side_2_redundant=0 total_non_overlap_reads=4 JC 1298 . NC_000913 1397238 -1 NC_000913 1978494 -1 0 alignment_overlap=0 coverage_minus=34 coverage_plus=24 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0 max_left=294 max_left_minus=283 max_left_plus=294 max_min_left=142 max_min_left_minus=112 max_min_left_plus=142 max_min_right=138 max_min_right_minus=138 max_min_right_plus=98 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=260 neg_log10_pos_hash_p_value=0.8 new_junction_coverage=0.71 new_junction_read_count=61 polymorphism_frequency=1.000e+00 pos_hash_score=41 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=58 JC 1299 . NC_000913 1411899 1 NC_000913 1434958 -1 0 alignment_overlap=26 coverage_minus=1 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=3.878e-02 junction_possible_overlap_registers=269 key=NC_000913__1411899__1__NC_000913__1434984__-1__26____300__300__0__0 max_left=179 max_left_minus=108 max_left_plus=179 max_min_left=108 max_min_left_minus=108 max_min_left_plus=18 max_min_right=95 max_min_right_minus=0 max_min_right_plus=95 max_pos_hash_score=538 max_right=256 max_right_minus=166 max_right_plus=256 neg_log10_pos_hash_p_value=7.8 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=3.878e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.15 side_1_overlap=26 side_1_possible_overlap_registers=295 side_1_read_count=99 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.38 side_2_overlap=0 side_2_possible_overlap_registers=269 side_2_read_count=108 side_2_redundant=0 total_non_overlap_reads=4 JC 1300 . NC_000913 1470516 -1 NC_000913 1978441 -1 0 alignment_overlap=2 coverage_minus=14 coverage_plus=20 flanking_left=300 flanking_right=300 frequency=7.500e-01 junction_possible_overlap_registers=293 key=NC_000913__1470516__-1__NC_000913__1978443__-1__2____300__300__1__0 max_left=294 max_left_minus=282 max_left_plus=294 max_min_left=148 max_min_left_minus=146 max_min_left_plus=148 max_min_right=80 max_min_right_minus=78 max_min_right_plus=80 max_pos_hash_score=586 max_right=277 max_right_minus=277 max_right_plus=271 neg_log10_pos_hash_p_value=1.9 new_junction_coverage=0.42 new_junction_read_count=36 polymorphism_frequency=7.500e-01 pos_hash_score=27 prediction=polymorphism side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.14 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=12 side_2_redundant=0 total_non_overlap_reads=34 JC 1301 . NC_000913 1978159 1 NC_000913 1979270 -1 0 alignment_overlap=0 coverage_minus=7 coverage_plus=9 flanking_left=300 flanking_right=300 frequency=1.345e-01 junction_possible_overlap_registers=295 key=NC_000913__1978159__1__NC_000913__1979270__-1__0____300__300__0__1 max_left=252 max_left_minus=252 max_left_plus=165 max_min_left=146 max_min_left_minus=0 max_min_left_plus=146 max_min_right=145 max_min_right_minus=145 max_min_right_plus=100 max_pos_hash_score=590 max_right=294 max_right_minus=145 max_right_plus=294 neg_log10_pos_hash_p_value=5.8 new_junction_coverage=0.19 new_junction_read_count=16 polymorphism_frequency=1.345e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.20 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=103 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=16 JC 1302 . NC_000913 1978503 1 NC_000913 2237879 -1 0 alignment_overlap=0 coverage_minus=46 coverage_plus=37 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1978503__1__NC_000913__2237879__-1__0____300__300__1__0 max_left=293 max_left_minus=286 max_left_plus=293 max_min_left=149 max_min_left_minus=149 max_min_left_plus=127 max_min_right=139 max_min_right_minus=139 max_min_right_plus=131 max_pos_hash_score=590 max_right=283 max_right_minus=283 max_right_plus=280 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.00 new_junction_read_count=86 polymorphism_frequency=1.000e+00 pos_hash_score=53 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=83 JC 1303 . NC_000913 1978503 1 NC_000913 4434636 -1 0 alignment_overlap=0 coverage_minus=48 coverage_plus=27 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1978503__1__NC_000913__4434636__-1__0____300__300__1__0 max_left=286 max_left_minus=286 max_left_plus=261 max_min_left=149 max_min_left_minus=149 max_min_left_plus=143 max_min_right=144 max_min_right_minus=144 max_min_right_plus=129 max_pos_hash_score=590 max_right=279 max_right_minus=279 max_right_plus=263 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.87 new_junction_read_count=75 polymorphism_frequency=1.000e+00 pos_hash_score=54 prediction=consensus read_count_offset=8 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=75 JC 1304 . NC_000913 1979270 -1 NC_000913 2237871 1 0 alignment_overlap=1 coverage_minus=40 coverage_plus=35 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1979270__-1__NC_000913__2237870__1__1____300__300__1__0 max_left=292 max_left_minus=275 max_left_plus=292 max_min_left=139 max_min_left_minus=136 max_min_left_plus=139 max_min_right=144 max_min_right_minus=142 max_min_right_plus=144 max_pos_hash_score=588 max_right=298 max_right_minus=298 max_right_plus=289 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.88 new_junction_read_count=75 polymorphism_frequency=1.000e+00 pos_hash_score=51 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=75 JC 1305 . NC_000913 1979271 1 NC_000913 2102947 -1 0 alignment_overlap=0 coverage_minus=50 coverage_plus=70 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1 max_left=299 max_left_minus=294 max_left_plus=299 max_min_left=144 max_min_left_minus=141 max_min_left_plus=144 max_min_right=145 max_min_right_minus=145 max_min_right_plus=134 max_pos_hash_score=590 max_right=299 max_right_minus=299 max_right_plus=286 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.47 new_junction_read_count=126 polymorphism_frequency=1.000e+00 pos_hash_score=71 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=120 JC 1306 . NC_000913 2357730 -1 NC_000913 2357926 1 0 alignment_overlap=40 coverage_minus=4 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=6.845e-02 junction_possible_overlap_registers=255 key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0 max_left=180 max_left_minus=180 max_left_plus=127 max_min_left=63 max_min_left_minus=36 max_min_left_plus=63 max_min_right=118 max_min_right_minus=118 max_min_right_plus=118 max_pos_hash_score=510 max_right=224 max_right_minus=224 max_right_plus=197 neg_log10_pos_hash_p_value=5.9 new_junction_coverage=0.09 new_junction_read_count=7 polymorphism_frequency=6.845e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.33 side_1_overlap=40 side_1_possible_overlap_registers=295 side_1_read_count=114 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.24 side_2_overlap=0 side_2_possible_overlap_registers=255 side_2_read_count=92 side_2_redundant=0 total_non_overlap_reads=7 JC 1307 . NC_000913 2357742 -1 NC_000913 2357938 1 0 alignment_overlap=11 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.690e-02 junction_possible_overlap_registers=284 key=NC_000913__2357742__-1__NC_000913__2357927__1__11____300__300__0__0 max_left=248 max_left_minus=248 max_left_plus=206 max_min_left=139 max_min_left_minus=0 max_min_left_plus=139 max_min_right=117 max_min_right_minus=117 max_min_right_plus=82 max_pos_hash_score=568 max_right=150 max_right_minus=117 max_right_plus=150 neg_log10_pos_hash_p_value=7.5 new_junction_coverage=0.07 new_junction_read_count=6 polymorphism_frequency=5.690e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.28 side_1_overlap=11 side_1_possible_overlap_registers=295 side_1_read_count=110 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.13 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=93 side_2_redundant=0 total_non_overlap_reads=5 JC 1308 . NC_000913 2558698 -1 NC_000913 2565489 1 0 alignment_overlap=8 coverage_minus=21 coverage_plus=30 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=287 key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0 max_left=288 max_left_minus=270 max_left_plus=288 max_min_left=145 max_min_left_minus=140 max_min_left_plus=145 max_min_right=131 max_min_right_minus=126 max_min_right_plus=131 max_pos_hash_score=574 max_right=277 max_right_minus=260 max_right_plus=277 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.62 new_junction_read_count=52 polymorphism_frequency=1.000e+00 pos_hash_score=43 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=51 JC 1309 . NC_000913 2653419 -1 NC_000913 2653746 1 0 alignment_overlap=25 coverage_minus=9 coverage_plus=9 flanking_left=300 flanking_right=300 frequency=2.076e-01 junction_possible_overlap_registers=270 key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0 max_left=256 max_left_minus=216 max_left_plus=256 max_min_left=121 max_min_left_minus=121 max_min_left_plus=46 max_min_right=108 max_min_right_minus=108 max_min_right_plus=17 max_pos_hash_score=540 max_right=259 max_right_minus=154 max_right_plus=259 neg_log10_pos_hash_p_value=3.7 new_junction_coverage=0.23 new_junction_read_count=18 polymorphism_frequency=2.076e-01 pos_hash_score=14 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.91 side_1_overlap=25 side_1_possible_overlap_registers=295 side_1_read_count=78 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.84 side_2_overlap=0 side_2_possible_overlap_registers=270 side_2_read_count=66 side_2_redundant=0 total_non_overlap_reads=18 JC 1310 . NC_000913 2728698 -1 NC_000913 2728940 1 0 alignment_overlap=7 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=NA junction_possible_overlap_registers=288 key=NC_000913__2728698__-1__NC_000913__2728933__1__7____300__300__1__1 max_left=215 max_left_minus=215 max_left_plus=168 max_min_left=1 max_min_left_minus=0 max_min_left_plus=1 max_min_right=125 max_min_right_minus=78 max_min_right_plus=125 max_pos_hash_score=576 max_right=125 max_right_minus=78 max_right_plus=125 neg_log10_pos_hash_p_value=8.1 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=NA pos_hash_score=3 prediction=unknown reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=7 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=3 JC 1311 . NC_000913 2817942 -1 NC_000913 2818492 1 0 alignment_overlap=20 coverage_minus=1 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=9.371e-02 junction_possible_overlap_registers=275 key=NC_000913__2817942__-1__NC_000913__2818472__1__20____300__300__0__0 max_left=268 max_left_minus=268 max_left_plus=232 max_min_left=3 max_min_left_minus=0 max_min_left_plus=3 max_min_right=49 max_min_right_minus=12 max_min_right_plus=49 max_pos_hash_score=550 max_right=277 max_right_minus=12 max_right_plus=277 neg_log10_pos_hash_p_value=7.9 new_junction_coverage=0.09 new_junction_read_count=7 polymorphism_frequency=9.371e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.79 side_1_overlap=20 side_1_possible_overlap_registers=295 side_1_read_count=68 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.90 side_2_overlap=0 side_2_possible_overlap_registers=275 side_2_read_count=72 side_2_redundant=0 total_non_overlap_reads=5 JC 1312 . NC_000913 2818256 -1 NC_000913 2818533 1 -1 alignment_overlap=-1 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=8.245e-02 junction_possible_overlap_registers=294 key=NC_000913__2818256__-1__NC_000913__2818533__1__-1__A__300__300__0__0 max_left=170 max_left_minus=161 max_left_plus=170 max_min_left=149 max_min_left_minus=149 max_min_left_plus=134 max_min_right=138 max_min_right_minus=138 max_min_right_plus=129 max_pos_hash_score=588 max_right=236 max_right_minus=157 max_right_plus=236 neg_log10_pos_hash_p_value=6.6 new_junction_coverage=0.07 new_junction_read_count=6 polymorphism_frequency=8.245e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.58 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=50 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.98 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=84 side_2_redundant=0 total_non_overlap_reads=6 unique_read_sequence=A JC 1313 . NC_000913 2878156 -1 NC_000913 2878403 1 0 alignment_overlap=29 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=8.192e-02 junction_possible_overlap_registers=266 key=NC_000913__2878156__-1__NC_000913__2878374__1__29____300__300__0__0 max_left=181 max_left_minus=181 max_left_plus=73 max_min_left=128 max_min_left_minus=128 max_min_left_plus=73 max_min_right=88 max_min_right_minus=88 max_min_right_plus=0 max_pos_hash_score=532 max_right=198 max_right_minus=143 max_right_plus=198 neg_log10_pos_hash_p_value=7.7 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=8.192e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.40 side_1_overlap=29 side_1_possible_overlap_registers=295 side_1_read_count=34 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.76 side_2_overlap=0 side_2_possible_overlap_registers=266 side_2_read_count=59 side_2_redundant=0 total_non_overlap_reads=4 JC 1314 . NC_000913 3069955 -1 NC_000913 3070123 1 0 alignment_overlap=18 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=2.668e-02 junction_possible_overlap_registers=277 key=NC_000913__3069955__-1__NC_000913__3070105__1__18____300__300__0__0 max_left=163 max_left_minus=163 max_left_plus=86 max_min_left=86 max_min_left_minus=0 max_min_left_plus=86 max_min_right=119 max_min_right_minus=119 max_min_right_plus=0 max_pos_hash_score=554 max_right=200 max_right_minus=119 max_right_plus=200 neg_log10_pos_hash_p_value=7.9 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=2.668e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.35 side_1_overlap=18 side_1_possible_overlap_registers=295 side_1_read_count=116 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.37 side_2_overlap=0 side_2_possible_overlap_registers=277 side_2_read_count=110 side_2_redundant=0 total_non_overlap_reads=3 JC 1315 . NC_000913 3270072 1 NC_000913 4137788 1 -25 alignment_overlap=-25 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.908e-02 junction_possible_overlap_registers=270 key=NC_000913__3270072__1__NC_000913__4137788__1__-25__CAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0 max_left=260 max_left_minus=260 max_left_plus=171 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=82 max_min_right_minus=82 max_min_right_plus=82 max_pos_hash_score=540 max_right=82 max_right_minus=82 max_right_plus=82 neg_log10_pos_hash_p_value=7.8 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=4.908e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=55 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.84 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=72 side_2_redundant=0 total_non_overlap_reads=3 unique_read_sequence=CAGATTGTTGAGTGCGCTTTATTCA JC 1316 . NC_000913 3468779 -1 NC_000913 3469104 1 0 alignment_overlap=17 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.694e-02 junction_possible_overlap_registers=278 key=NC_000913__3468779__-1__NC_000913__3469087__1__17____300__300__0__0 max_left=102 max_left_minus=102 max_left_plus=102 max_min_left=102 max_min_left_minus=102 max_min_left_plus=102 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=556 max_right=133 max_right_minus=110 max_right_plus=133 neg_log10_pos_hash_p_value=7.9 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=3.694e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.92 side_1_overlap=17 side_1_possible_overlap_registers=295 side_1_read_count=79 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.01 side_2_overlap=0 side_2_possible_overlap_registers=278 side_2_read_count=82 side_2_redundant=0 total_non_overlap_reads=3 JC 1317 . NC_000913 3470196 -1 NC_000913 3470386 1 0 alignment_overlap=13 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.775e-02 junction_possible_overlap_registers=282 key=NC_000913__3470196__-1__NC_000913__3470373__1__13____300__300__0__1 max_left=249 max_left_minus=249 max_left_plus=213 max_min_left=60 max_min_left_minus=0 max_min_left_plus=60 max_min_right=72 max_min_right_minus=38 max_min_right_plus=72 max_pos_hash_score=564 max_right=227 max_right_minus=38 max_right_plus=227 neg_log10_pos_hash_p_value=8.0 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=3.775e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.93 side_1_overlap=13 side_1_possible_overlap_registers=295 side_1_read_count=80 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=3 JC 1318 . NC_000913 3583428 1 NC_000913 4434629 1 0 alignment_overlap=0 coverage_minus=48 coverage_plus=34 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__3583428__1__NC_000913__4434629__1__0____300__300__1__0 max_left=284 max_left_minus=284 max_left_plus=262 max_min_left=147 max_min_left_minus=147 max_min_left_plus=147 max_min_right=149 max_min_right_minus=147 max_min_right_plus=149 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=268 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.97 new_junction_read_count=83 polymorphism_frequency=1.000e+00 pos_hash_score=50 prediction=consensus read_count_offset=8 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=82 JC 1319 . NC_000913 3621836 -1 NC_000913 3622017 1 0 alignment_overlap=12 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=283 key=NC_000913__3621848__-1__NC_000913__3622017__1__12____300__300__1__0 max_left=210 max_left_minus=210 max_left_plus=112 max_min_left=112 max_min_left_minus=112 max_min_left_plus=112 max_min_right=63 max_min_right_minus=63 max_min_right_plus=0 max_pos_hash_score=566 max_right=280 max_right_minus=116 max_right_plus=280 neg_log10_pos_hash_p_value=6.4 new_junction_coverage=0.07 new_junction_read_count=6 polymorphism_frequency=8.622e-01 pos_hash_score=6 prediction=consensus reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=12 side_2_possible_overlap_registers=295 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=6 JC 1320 . NC_000913 3648146 -1 NC_000913 3648378 1 0 alignment_overlap=58 coverage_minus=4 coverage_plus=6 flanking_left=300 flanking_right=300 frequency=1.082e-01 junction_possible_overlap_registers=237 key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0 max_left=234 max_left_minus=234 max_left_plus=136 max_min_left=63 max_min_left_minus=29 max_min_left_plus=63 max_min_right=102 max_min_right_minus=14 max_min_right_plus=102 max_pos_hash_score=474 max_right=238 max_right_minus=87 max_right_plus=238 neg_log10_pos_hash_p_value=4.5 new_junction_coverage=0.16 new_junction_read_count=11 polymorphism_frequency=1.082e-01 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.34 side_1_overlap=58 side_1_possible_overlap_registers=295 side_1_read_count=115 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.29 side_2_overlap=0 side_2_possible_overlap_registers=237 side_2_read_count=89 side_2_redundant=0 total_non_overlap_reads=10 JC 1321 . NC_000913 3736503 -1 NC_000913 3736834 1 0 alignment_overlap=8 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.024e-02 junction_possible_overlap_registers=287 key=NC_000913__3736503__-1__NC_000913__3736826__1__8____300__300__0__0 max_left=172 max_left_minus=172 max_left_plus=172 max_min_left=6 max_min_left_minus=0 max_min_left_plus=6 max_min_right=104 max_min_right_minus=104 max_min_right_plus=104 max_pos_hash_score=574 max_right=182 max_right_minus=104 max_right_plus=182 neg_log10_pos_hash_p_value=7.5 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=5.024e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.76 side_1_overlap=8 side_1_possible_overlap_registers=295 side_1_read_count=65 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.05 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=88 side_2_redundant=0 total_non_overlap_reads=4 JC 1322 . NC_000913 3764827 -1 NC_000913 3765008 1 0 alignment_overlap=12 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=7.227e-01 junction_possible_overlap_registers=283 key=NC_000913__3764839__-1__NC_000913__3765008__1__12____300__300__1__0 max_left=210 max_left_minus=210 max_left_plus=112 max_min_left=112 max_min_left_minus=112 max_min_left_plus=112 max_min_right=63 max_min_right_minus=63 max_min_right_plus=0 max_pos_hash_score=566 max_right=116 max_right_minus=116 max_right_plus=116 neg_log10_pos_hash_p_value=6.9 new_junction_coverage=0.06 new_junction_read_count=5 polymorphism_frequency=7.227e-01 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=12 side_2_possible_overlap_registers=295 side_2_read_count=2 side_2_redundant=0 total_non_overlap_reads=5 JC 1323 . NC_000913 3792655 -1 NC_000913 3793939 1 -61 alignment_overlap=-61 coverage_minus=40 coverage_plus=21 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=234 key=NC_000913__3792655__-1__NC_000913__3793939__1__-61__CCATCAATCTCACTTTTGGCGAATGGCTGAAGCCAACGCCGTGTAGTGATATGATAGAAGT__300__300__0__0 max_left=237 max_left_minus=230 max_left_plus=237 max_min_left=117 max_min_left_minus=105 max_min_left_plus=117 max_min_right=103 max_min_right_minus=76 max_min_right_plus=103 max_pos_hash_score=468 max_right=233 max_right_minus=221 max_right_plus=233 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.98 new_junction_read_count=67 polymorphism_frequency=1.000e+00 pos_hash_score=43 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=61 unique_read_sequence=CCATCAATCTCACTTTTGGCGAATGGCTGAAGCCAACGCCGTGTAGTGATATGATAGAAGT JC 1324 . NC_000913 3815849 -1 NC_000913 3816146 1 0 alignment_overlap=8 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.064e-02 junction_possible_overlap_registers=287 key=NC_000913__3815849__-1__NC_000913__3816138__1__8____300__300__0__0 max_left=213 max_left_minus=213 max_left_plus=136 max_min_left=136 max_min_left_minus=2 max_min_left_plus=136 max_min_right=79 max_min_right_minus=79 max_min_right_plus=0 max_pos_hash_score=574 max_right=290 max_right_minus=290 max_right_plus=156 neg_log10_pos_hash_p_value=8.1 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=4.064e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.01 side_1_overlap=8 side_1_possible_overlap_registers=295 side_1_read_count=87 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.68 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=57 side_2_redundant=0 total_non_overlap_reads=3 JC 1325 . NC_000913 3943955 -1 NC_000913 3944197 1 0 alignment_overlap=7 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=NA junction_possible_overlap_registers=288 key=NC_000913__3943955__-1__NC_000913__3944190__1__7____300__300__1__1 max_left=125 max_left_minus=125 max_left_plus=78 max_min_left=125 max_min_left_minus=125 max_min_left_plus=78 max_min_right=1 max_min_right_minus=1 max_min_right_plus=0 max_pos_hash_score=576 max_right=215 max_right_minus=168 max_right_plus=215 neg_log10_pos_hash_p_value=8.1 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=NA pos_hash_score=3 prediction=unknown reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=7 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=3 JC 1326 . NC_000913 4210294 -1 NC_000913 4210536 1 0 alignment_overlap=7 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.387e-01 junction_possible_overlap_registers=288 key=NC_000913__4210294__-1__NC_000913__4210529__1__7____300__300__0__1 max_left=125 max_left_minus=125 max_left_plus=78 max_min_left=125 max_min_left_minus=125 max_min_left_plus=78 max_min_right=1 max_min_right_minus=1 max_min_right_plus=0 max_pos_hash_score=576 max_right=215 max_right_minus=168 max_right_plus=215 neg_log10_pos_hash_p_value=8.1 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=3.387e-01 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.07 side_1_overlap=7 side_1_possible_overlap_registers=295 side_1_read_count=6 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=3 JC 1327 . NC_000913 4542690 -1 NC_000913 4542986 -1 0 alignment_overlap=9 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.257e-02 junction_possible_overlap_registers=286 key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0 max_left=195 max_left_minus=195 max_left_plus=191 max_min_left=141 max_min_left_minus=141 max_min_left_plus=0 max_min_right=100 max_min_right_minus=93 max_min_right_plus=100 max_pos_hash_score=572 max_right=150 max_right_minus=150 max_right_plus=100 neg_log10_pos_hash_p_value=8.1 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=2.257e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.60 side_1_overlap=9 side_1_possible_overlap_registers=295 side_1_read_count=137 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.53 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=127 side_2_redundant=0 total_non_overlap_reads=3 UN 1328 . 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