#=GENOME_DIFF	1.0
#=CREATED	14:10:25 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8468_S11_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8468_S11_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8468_S11_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8468_S11_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8468_S11_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	418167998
#=CONVERTED-READS	1417219
#=INPUT-BASES	418271923
#=INPUT-READS	1417574
#=MAPPED-BASES	364471301
#=MAPPED-READS	1234482
SNP	1	170	NC_000913	246747	T
DEL	2	370,382	NC_000913	257908	776
SNP	3	171	NC_000913	407504	G
SNP	4	172	NC_000913	472849	G
SNP	5	173	NC_000913	495622	T
SNP	6	174	NC_000913	534742	A
SNP	7	175	NC_000913	547891	T
DEL	8	373,383	NC_000913	575786	3398	mediated=IS5
SNP	9	176	NC_000913	582597	T
SNP	10	177	NC_000913	690948	A
SNP	11	178	NC_000913	700038	A
SUB	12	182,183	NC_000913	809217	2	AG
SNP	13	185	NC_000913	1073610	A
SNP	14	186	NC_000913	1077657	T
SNP	15	188	NC_000913	1102774	T
SNP	16	189	NC_000913	1105847	A
SUB	17	190,191	NC_000913	1123823	2	AG
SNP	18	192	NC_000913	1147792	A
SNP	19	193	NC_000913	1158298	T
SNP	20	194	NC_000913	1169836	G
SNP	21	195	NC_000913	1176122	T
SNP	22	196	NC_000913	1189980	G
SNP	23	197	NC_000913	1194922	A
SNP	24	198	NC_000913	1196220	T
SNP	25	199	NC_000913	1196232	T
SNP	26	200	NC_000913	1196245	C
SNP	27	201	NC_000913	1196247	G
SNP	28	202	NC_000913	1196277	T
SNP	29	203	NC_000913	1196280	C
SNP	30	204	NC_000913	1196283	G
SNP	31	205	NC_000913	1196292	T
SNP	32	206	NC_000913	1196304	A
SNP	33	210	NC_000913	1222119	A
SNP	34	211	NC_000913	1222525	A
SNP	35	212	NC_000913	1247587	A
SNP	36	213	NC_000913	1253002	T
MOB	37	393,394	NC_000913	1293196	IS5	-1	4
INS	38	214	NC_000913	1301976	T
SNP	39	215	NC_000913	1301979	C
SNP	40	216	NC_000913	1301992	T
SNP	41	217	NC_000913	1306736	G
SNP	42	218	NC_000913	1337394	G
SNP	43	219	NC_000913	1357202	T
SNP	44	220	NC_000913	1358859	C
SNP	45	221	NC_000913	1380222	A
SNP	46	222	NC_000913	1381927	A
SNP	47	223	NC_000913	1405758	A
SNP	48	224	NC_000913	1407851	A
SNP	49	226	NC_000913	1489491	A
SUB	50	227,228,229,230	NC_000913	1497385	4	CAA
SNP	51	232	NC_000913	1609148	A
SNP	52	233	NC_000913	1629247	T
SNP	53	234	NC_000913	1643679	T
SNP	54	235	NC_000913	1652331	C
SNP	55	236	NC_000913	1667460	A
SNP	56	237	NC_000913	1748841	T
SNP	57	238	NC_000913	1751024	A
SNP	58	239	NC_000913	1764017	T
SNP	59	240	NC_000913	1797083	T
SUB	60	241,242	NC_000913	1848300	2	TT
MOB	61	399,400	NC_000913	1879829	IS186	1	6	del_end=1	del_start=1
SNP	62	243	NC_000913	1894839	C
SNP	63	244	NC_000913	1932745	T
SNP	64	245	NC_000913	1962172	T
DEL	65	246	NC_000913	1977215	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
SNP	66	247	NC_000913	1996093	A
SNP	67	248	NC_000913	1998749	T
SNP	68	249	NC_000913	2017589	C
SNP	69	250	NC_000913	2028651	A
SNP	70	251	NC_000913	2040433	A
SNP	71	252	NC_000913	2041278	A
SNP	72	253	NC_000913	2052885	A
MOB	73	401,402	NC_000913	2094553	IS1	1	9
SNP	74	255	NC_000913	2104024	T
DEL	75	256	NC_000913	2111259	1
SNP	76	257	NC_000913	2142598	A
DEL	77	377,405	NC_000913	2171429	5958	mediated=IS3
SNP	78	258	NC_000913	2233609	T
SNP	79	259	NC_000913	2242247	T
SNP	80	260	NC_000913	2247134	C
SNP	81	261	NC_000913	2281855	C
SNP	82	262	NC_000913	2281954	A
SNP	83	264	NC_000913	2353360	T
SNP	84	265	NC_000913	2404402	A
SNP	85	266	NC_000913	2531659	T
SNP	86	267	NC_000913	2534506	T
SNP	87	268	NC_000913	2556984	A
DEL	88	378,409	NC_000913	2558699	6790
SNP	89	269	NC_000913	2587112	T
SNP	90	270	NC_000913	2609473	A
SNP	91	271	NC_000913	2744217	T
SNP	92	274	NC_000913	2774947	A
SNP	93	276	NC_000913	2867455	A
SNP	94	277	NC_000913	2880635	C
SNP	95	278	NC_000913	2926772	A
SNP	96	279	NC_000913	2942306	A
SNP	97	280	NC_000913	3025598	A
SNP	98	282	NC_000913	3070858	G
SNP	99	283	NC_000913	3087508	T
SNP	100	284	NC_000913	3134479	T
SNP	101	285	NC_000913	3167148	A
DEL	102	286	NC_000913	3207549	1
SNP	103	287	NC_000913	3241106	G
SNP	104	288	NC_000913	3279276	G
SNP	105	289	NC_000913	3296481	A
SNP	106	290	NC_000913	3302338	A
SNP	107	291	NC_000913	3329743	T
SNP	108	292	NC_000913	3388041	G
SNP	109	294	NC_000913	3411689	T
SNP	110	295	NC_000913	3433900	T
SNP	111	296	NC_000913	3465502	A
SNP	112	297	NC_000913	3474424	G
SNP	113	298	NC_000913	3486502	T
SNP	114	299	NC_000913	3511466	T
SNP	115	300	NC_000913	3524913	T
SUB	116	301,302	NC_000913	3555047	2	TG
INS	117	303	NC_000913	3560455	G
SNP	118	304	NC_000913	3581222	G
SNP	119	305	NC_000913	3599487	T
SNP	120	306	NC_000913	3602471	T
SNP	121	307	NC_000913	3618809	T
SNP	122	314	NC_000913	3647428	T
SNP	123	315	NC_000913	3670329	T
SNP	124	316	NC_000913	3685480	T
SNP	125	317	NC_000913	3707947	A
SNP	126	319	NC_000913	3719378	A
SNP	127	320	NC_000913	3719429	A
SNP	128	321	NC_000913	3725176	G
SUB	129	322,323	NC_000913	3729440	2	TT
SNP	130	324	NC_000913	3730560	T
SNP	131	325	NC_000913	3737783	T
SNP	132	328	NC_000913	3770539	T
SNP	133	329	NC_000913	3772207	T
DEL	134	330	NC_000913	3773173	1
SNP	135	331	NC_000913	3773176	T
INS	136	332	NC_000913	3815883	C
SNP	137	334	NC_000913	3926991	A
SUB	138	335,336	NC_000913	3966530	2	TT
MOB	139	416,417	NC_000913	4044847	IS5	1	4
SNP	140	338	NC_000913	4081749	A
SNP	141	339	NC_000913	4095026	A
SNP	142	340	NC_000913	4096144	A
MOB	143	414,420	NC_000913	4124494	IS2	1	5
SNP	144	341	NC_000913	4133270	T
SNP	145	342	NC_000913	4138436	T
SNP	146	343	NC_000913	4145137	T
SNP	147	344	NC_000913	4166554	T
SNP	148	346	NC_000913	4223638	C
SNP	149	347	NC_000913	4256705	T
SNP	150	348	NC_000913	4259570	A
INS	151	351,352	NC_000913	4296381	GC
SNP	152	353	NC_000913	4307944	T
SNP	153	354	NC_000913	4322288	G
SNP	154	355	NC_000913	4325000	T
SNP	155	356	NC_000913	4325644	T
SNP	156	357	NC_000913	4331890	T
SNP	157	359	NC_000913	4437890	T
MOB	158	404,406	NC_000913	4440465	IS3	-1	3
SNP	159	360	NC_000913	4473900	T
SNP	160	361	NC_000913	4475493	C
SNP	161	362	NC_000913	4476605	A
SNP	162	363	NC_000913	4489016	T
SNP	163	364	NC_000913	4510238	G
SNP	164	365	NC_000913	4532409	G
SNP	165	366	NC_000913	4546601	T
SNP	166	368	NC_000913	4636925	C
SNP	167	369	NC_000913	4638240	A
MOB	168	422,423	NC_000913	4640418	IS30	-1	2
RA	169	.	NC_000913	58065	0	C	A	bias_e_value=3.07821	bias_p_value=6.63171e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.9	fisher_strand_p_value=3.65919e-08	frequency=2.927e-01	ks_quality_p_value=1	major_base=C	major_cov=22/36	major_frequency=7.073e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.927e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=22/36	total_cov=46/36
RA	170	.	NC_000913	246747	0	G	T	consensus_score=315.6	frequency=1	major_base=T	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	171	.	NC_000913	407504	0	T	G	bias_e_value=3911680	bias_p_value=0.842735	consensus_score=325.4	fisher_strand_p_value=0.494505	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=45/44	major_frequency=9.780e-01	minor_base=T	minor_cov=0/2	new_cov=45/44	polymorphism_frequency=9.780e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=45/46
RA	172	.	NC_000913	472849	0	A	G	consensus_score=282.3	frequency=1	major_base=G	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	173	.	NC_000913	495622	0	C	T	bias_e_value=3792340	bias_p_value=0.817025	consensus_score=305.4	fisher_strand_p_value=0.45977	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/39	major_frequency=9.885e-01	minor_base=G	minor_cov=0/1	new_cov=47/39	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	174	.	NC_000913	534742	0	G	A	consensus_score=212.7	frequency=1	major_base=A	major_cov=40/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/22
RA	175	.	NC_000913	547891	0	C	T	consensus_score=169.8	frequency=1	major_base=T	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	176	.	NC_000913	582597	0	C	T	consensus_score=401.4	frequency=1	major_base=T	major_cov=66/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/49
RA	177	.	NC_000913	690948	0	G	A	consensus_score=201.6	frequency=1	major_base=A	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	178	.	NC_000913	700038	0	G	A	consensus_score=196.8	frequency=1	major_base=A	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	179	.	NC_000913	731374	0	G	A	consensus_score=11.7	deleted=1	frequency=1	major_base=A	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	180	.	NC_000913	731375	0	C	T	consensus_score=10.2	deleted=1	frequency=1	major_base=T	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	181	.	NC_000913	731392	0	A	G	consensus_score=10.9	deleted=1	frequency=1	major_base=G	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	182	.	NC_000913	809217	0	C	A	consensus_score=212.0	frequency=1	major_base=A	major_cov=40/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/24
RA	183	.	NC_000913	809218	0	A	G	consensus_score=238.6	frequency=1	major_base=G	major_cov=40/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/24
RA	184	.	NC_000913	847955	0	G	A	bias_e_value=0.00419967	bias_p_value=9.04778e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.3	fisher_strand_p_value=3.61276e-11	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=43/25	major_frequency=6.667e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.333e-01	polymorphism_score=46.0	prediction=polymorphism	ref_cov=43/25	total_cov=43/59
RA	185	.	NC_000913	1073610	0	G	A	consensus_score=164.7	frequency=1	major_base=A	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	186	.	NC_000913	1077657	0	C	T	consensus_score=162.6	frequency=1	major_base=T	major_cov=19/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/29
RA	187	.	NC_000913	1097118	0	C	A	bias_e_value=1137800	bias_p_value=0.245128	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.9	fisher_strand_p_value=0.0671937	frequency=3.043e-01	ks_quality_p_value=0.980777	major_base=C	major_cov=1/15	major_frequency=6.957e-01	minor_base=A	minor_cov=3/4	new_cov=3/4	polymorphism_frequency=3.043e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=1/15	total_cov=4/19
RA	188	.	NC_000913	1102774	0	C	T	consensus_score=237.9	frequency=1	major_base=T	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	189	.	NC_000913	1105847	0	G	A	consensus_score=286.1	frequency=1	major_base=A	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	190	.	NC_000913	1123823	0	G	A	consensus_score=163.6	frequency=1	major_base=A	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	191	.	NC_000913	1123824	0	T	G	consensus_score=178.4	frequency=1	major_base=G	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	192	.	NC_000913	1147792	0	T	A	consensus_score=162.5	frequency=1	major_base=A	major_cov=31/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/20
RA	193	.	NC_000913	1158298	0	C	T	consensus_score=203.4	frequency=1	major_base=T	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	194	.	NC_000913	1169836	0	A	G	bias_e_value=3541770	bias_p_value=0.763041	consensus_score=194.7	fisher_strand_p_value=0.396226	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=20/32	major_frequency=9.811e-01	minor_base=A	minor_cov=1/0	new_cov=20/32	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=21/32
RA	195	.	NC_000913	1176122	0	C	T	consensus_score=143.3	frequency=1	major_base=T	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	196	.	NC_000913	1189980	0	A	G	consensus_score=229.7	frequency=1	major_base=G	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	197	.	NC_000913	1194922	0	G	A	consensus_score=251.8	frequency=1	major_base=A	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	198	.	NC_000913	1196220	0	C	T	consensus_score=131.8	frequency=1	major_base=T	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	199	.	NC_000913	1196232	0	C	T	consensus_score=127.4	frequency=1	major_base=T	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	200	.	NC_000913	1196245	0	T	C	consensus_score=122.2	frequency=1	major_base=C	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	201	.	NC_000913	1196247	0	A	G	consensus_score=120.4	frequency=1	major_base=G	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	202	.	NC_000913	1196277	0	C	T	consensus_score=77.0	frequency=1	major_base=T	major_cov=14/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	203	.	NC_000913	1196280	0	G	C	bias_e_value=3868310	bias_p_value=0.83339	consensus_score=65.4	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=12/14	major_frequency=9.286e-01	minor_base=A	minor_cov=2/0	new_cov=12/14	polymorphism_frequency=9.286e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	204	.	NC_000913	1196283	0	A	G	consensus_score=77.9	frequency=1	major_base=G	major_cov=14/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	205	.	NC_000913	1196292	0	C	T	consensus_score=72.0	frequency=1	major_base=T	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	206	.	NC_000913	1196304	0	G	A	consensus_score=42.4	frequency=1	major_base=A	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	207	.	NC_000913	1196316	0	T	A	consensus_score=38.5	deleted=1	frequency=1	major_base=A	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	208	.	NC_000913	1196325	0	A	G	consensus_score=23.6	deleted=1	frequency=1	major_base=G	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	209	.	NC_000913	1196352	0	C	A	consensus_score=18.6	deleted=1	frequency=1	major_base=A	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	210	.	NC_000913	1222119	0	G	A	consensus_score=157.3	frequency=1	major_base=A	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	211	.	NC_000913	1222525	0	G	A	consensus_score=268.5	frequency=1	major_base=A	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	212	.	NC_000913	1247587	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=291.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/38	major_frequency=9.875e-01	minor_base=C	minor_cov=1/0	new_cov=41/38	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	213	.	NC_000913	1253002	0	C	T	consensus_score=254.4	frequency=1	major_base=T	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	214	.	NC_000913	1301976	1	.	T	consensus_score=198.6	frequency=1	major_base=T	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	215	.	NC_000913	1301979	0	A	C	consensus_score=220.1	frequency=1	major_base=C	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	216	.	NC_000913	1301992	0	A	T	consensus_score=235.6	frequency=1	major_base=T	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	217	.	NC_000913	1306736	0	T	G	consensus_score=283.5	frequency=1	major_base=G	major_cov=45/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/30
RA	218	.	NC_000913	1337394	0	A	G	consensus_score=195.6	frequency=1	major_base=G	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	219	.	NC_000913	1357202	0	C	T	consensus_score=269.5	frequency=1	major_base=T	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	220	.	NC_000913	1358859	0	T	C	consensus_score=237.1	frequency=1	major_base=C	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	221	.	NC_000913	1380222	0	G	A	consensus_score=205.1	frequency=1	major_base=A	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	222	.	NC_000913	1381927	0	G	A	consensus_score=209.2	frequency=1	major_base=A	major_cov=20/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/36
RA	223	.	NC_000913	1405758	0	G	A	consensus_score=327.2	frequency=1	major_base=A	major_cov=49/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/45
RA	224	.	NC_000913	1407851	0	G	A	consensus_score=326.1	frequency=1	major_base=A	major_cov=53/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	225	.	NC_000913	1427992	0	G	T	bias_e_value=4.11962e-05	bias_p_value=8.87533e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.2	fisher_strand_p_value=2.97394e-13	frequency=3.445e-01	ks_quality_p_value=1	major_base=G	major_cov=49/29	major_frequency=6.555e-01	minor_base=T	minor_cov=0/41	new_cov=0/41	polymorphism_frequency=3.445e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=49/29	total_cov=49/70
RA	226	.	NC_000913	1489491	0	G	A	bias_e_value=4641320	bias_p_value=0.999929	consensus_score=248.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988084	major_base=A	major_cov=40/37	major_frequency=9.872e-01	minor_base=C	minor_cov=1/0	new_cov=40/37	polymorphism_frequency=9.872e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/1	total_cov=41/38
RA	227	.	NC_000913	1497385	0	T	C	consensus_score=157.4	frequency=1	major_base=C	major_cov=19/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	228	.	NC_000913	1497386	0	T	.	consensus_score=200.2	frequency=1	major_base=.	major_cov=19/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	229	.	NC_000913	1497387	0	C	A	consensus_score=137.7	frequency=1	major_base=A	major_cov=19/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	230	.	NC_000913	1497388	0	T	A	consensus_score=143.7	frequency=1	major_base=A	major_cov=19/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	231	.	NC_000913	1502770	0	T	C	bias_e_value=22.4279	bias_p_value=4.83187e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.8	fisher_strand_p_value=3.01733e-07	frequency=2.903e-01	ks_quality_p_value=1	major_base=T	major_cov=30/14	major_frequency=7.097e-01	minor_base=C	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.903e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=30/14	total_cov=30/32
RA	232	.	NC_000913	1609148	0	G	A	consensus_score=158.5	frequency=1	major_base=A	major_cov=27/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/20
RA	233	.	NC_000913	1629247	0	C	T	consensus_score=221.7	frequency=1	major_base=T	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	234	.	NC_000913	1643679	0	A	T	consensus_score=156.3	frequency=1	major_base=T	major_cov=18/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/29
RA	235	.	NC_000913	1652331	0	T	C	consensus_score=281.9	frequency=1	major_base=C	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	236	.	NC_000913	1667460	0	G	A	bias_e_value=2447310	bias_p_value=0.52725	consensus_score=258.9	fisher_strand_p_value=0.203349	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/42	major_frequency=9.740e-01	minor_base=C	minor_cov=2/0	new_cov=33/42	polymorphism_frequency=9.740e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	237	.	NC_000913	1748841	0	C	T	consensus_score=180.8	frequency=1	major_base=T	major_cov=22/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/28
RA	238	.	NC_000913	1751024	0	C	A	consensus_score=181.9	frequency=1	major_base=A	major_cov=29/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/22
RA	239	.	NC_000913	1764017	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=203.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/30	major_frequency=9.828e-01	minor_base=G	minor_cov=0/1	new_cov=27/30	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	240	.	NC_000913	1797083	0	C	T	consensus_score=130.6	frequency=1	major_base=T	major_cov=27/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/14
RA	241	.	NC_000913	1848300	0	C	T	consensus_score=161.0	frequency=1	major_base=T	major_cov=21/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/29
RA	242	.	NC_000913	1848301	0	C	T	consensus_score=155.6	frequency=1	major_base=T	major_cov=21/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/29
RA	243	.	NC_000913	1894839	0	T	C	consensus_score=190.7	frequency=1	major_base=C	major_cov=34/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/18
RA	244	.	NC_000913	1932745	0	C	T	consensus_score=191.2	frequency=1	major_base=T	major_cov=28/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/25
RA	245	.	NC_000913	1962172	0	C	T	consensus_score=352.6	frequency=1	major_base=T	major_cov=42/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/61
RA	246	.	NC_000913	1977215	0	A	.	consensus_score=511.0	frequency=1	major_base=.	major_cov=58/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/51
RA	247	.	NC_000913	1996093	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=357.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/53	major_frequency=9.906e-01	minor_base=C	minor_cov=1/0	new_cov=52/53	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/53
RA	248	.	NC_000913	1998749	0	C	T	consensus_score=292.9	frequency=1	major_base=T	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	249	.	NC_000913	2017589	0	A	C	bias_e_value=3876390	bias_p_value=0.835131	consensus_score=231.8	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/32	major_frequency=9.839e-01	minor_base=A	minor_cov=1/0	new_cov=29/32	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/32
RA	250	.	NC_000913	2028651	0	G	A	consensus_score=361.7	frequency=1	major_base=A	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	251	.	NC_000913	2040433	0	C	A	bias_e_value=3914910	bias_p_value=0.843431	consensus_score=392.8	fisher_strand_p_value=0.495495	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/56	major_frequency=9.821e-01	minor_base=C	minor_cov=2/0	new_cov=54/56	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=56/56
RA	252	.	NC_000913	2041278	0	G	A	consensus_score=426.5	frequency=1	major_base=A	major_cov=41/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/77
RA	253	.	NC_000913	2052885	0	G	A	consensus_score=484.6	frequency=1	major_base=A	major_cov=70/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/67
RA	254	.	NC_000913	2068749	0	G	T	bias_e_value=0.357687	bias_p_value=7.70604e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=295.5	fisher_strand_p_value=3.7786e-09	frequency=2.353e-01	ks_quality_p_value=1	major_base=G	major_cov=57/60	major_frequency=7.647e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.353e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=57/60	total_cov=57/96
RA	255	.	NC_000913	2104024	0	G	T	consensus_score=670.1	frequency=1	major_base=T	major_cov=95/101	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=95/101	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=95/101
RA	256	.	NC_000913	2111259	0	G	.	bias_e_value=3678400	bias_p_value=0.792477	consensus_score=713.6	fisher_strand_p_value=0.42953	frequency=1	ks_quality_p_value=0.999909	major_base=.	major_cov=63/85	major_frequency=9.933e-01	minor_base=G	minor_cov=1/0	new_cov=63/85	polymorphism_frequency=9.933e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=64/85
RA	257	.	NC_000913	2142598	0	G	A	consensus_score=254.1	frequency=1	major_base=A	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	258	.	NC_000913	2233609	0	C	T	consensus_score=427.0	frequency=1	major_base=T	major_cov=67/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/54
RA	259	.	NC_000913	2242247	0	C	T	consensus_score=228.1	frequency=1	major_base=T	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	260	.	NC_000913	2247134	0	A	C	consensus_score=407.4	frequency=1	major_base=C	major_cov=35/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/72
RA	261	.	NC_000913	2281855	0	T	C	consensus_score=219.7	frequency=1	major_base=C	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	262	.	NC_000913	2281954	0	C	A	consensus_score=211.6	frequency=1	major_base=A	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	263	.	NC_000913	2288418	0	G	T	bias_e_value=0.0250344	bias_p_value=5.39342e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.9	fisher_strand_p_value=2.32661e-10	frequency=3.000e-01	ks_quality_p_value=1	major_base=G	major_cov=46/31	major_frequency=7.000e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=3.000e-01	polymorphism_score=20.7	prediction=polymorphism	ref_cov=46/31	total_cov=47/64
RA	264	.	NC_000913	2353360	0	C	T	consensus_score=153.7	frequency=1	major_base=T	major_cov=25/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/18
RA	265	.	NC_000913	2404402	0	G	A	consensus_score=203.5	frequency=1	major_base=A	major_cov=40/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/22
RA	266	.	NC_000913	2531659	0	C	T	consensus_score=273.8	frequency=1	major_base=T	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	267	.	NC_000913	2534506	0	C	T	consensus_score=255.1	frequency=1	major_base=T	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	268	.	NC_000913	2556984	0	G	A	bias_e_value=3866720	bias_p_value=0.833047	consensus_score=267.9	fisher_strand_p_value=0.481013	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/37	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=41/37	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=41/38
RA	269	.	NC_000913	2587112	0	C	T	consensus_score=186.3	frequency=1	major_base=T	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	270	.	NC_000913	2609473	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=264.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/32	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=46/32	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/32
RA	271	.	NC_000913	2744217	0	C	T	consensus_score=291.9	frequency=1	major_base=T	major_cov=42/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/40
RA	272	.	NC_000913	2767444	0	C	A	bias_e_value=0.0194512	bias_p_value=4.19058e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.8	fisher_strand_p_value=1.7874e-10	frequency=4.058e-01	ks_quality_p_value=1	major_base=C	major_cov=11/30	major_frequency=5.942e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=4.058e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=11/30	total_cov=39/30
RA	273	.	NC_000913	2767445	0	C	A	bias_e_value=15.1495	bias_p_value=3.26382e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.8	fisher_strand_p_value=1.98628e-07	frequency=3.623e-01	ks_quality_p_value=1	major_base=C	major_cov=15/29	major_frequency=6.377e-01	minor_base=A	minor_cov=24/1	new_cov=24/1	polymorphism_frequency=3.623e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=15/29	total_cov=39/30
RA	274	.	NC_000913	2774947	0	G	A	consensus_score=357.7	frequency=1	major_base=A	major_cov=54/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/52
RA	275	.	NC_000913	2818324	0	G	A	bias_e_value=4421080	bias_p_value=0.95248	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.7	fisher_strand_p_value=1	frequency=2.182e-01	ks_quality_p_value=0.707998	major_base=G	major_cov=18/25	major_frequency=7.818e-01	minor_base=A	minor_cov=5/7	new_cov=5/7	polymorphism_frequency=2.182e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=18/25	total_cov=23/32
RA	276	.	NC_000913	2867455	0	G	A	consensus_score=370.4	frequency=1	major_base=A	major_cov=64/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/40
RA	277	.	NC_000913	2880635	0	T	C	bias_e_value=2908950	bias_p_value=0.626706	consensus_score=393.6	fisher_strand_p_value=0.272442	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=64/45	major_frequency=9.732e-01	minor_base=A	minor_cov=3/0	new_cov=64/45	polymorphism_frequency=9.732e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=67/46
RA	278	.	NC_000913	2926772	0	C	A	consensus_score=255.2	frequency=1	major_base=A	major_cov=51/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/25
RA	279	.	NC_000913	2942306	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=387.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=64/48	major_frequency=9.912e-01	minor_base=G	minor_cov=1/0	new_cov=64/48	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=65/48
RA	280	.	NC_000913	3025598	0	T	A	consensus_score=475.6	frequency=1	major_base=A	major_cov=57/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/72
RA	281	.	NC_000913	3032307	0	C	T	bias_e_value=0.0323075	bias_p_value=6.96033e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.3	fisher_strand_p_value=3.03748e-10	frequency=2.561e-01	ks_quality_p_value=1	major_base=C	major_cov=15/46	major_frequency=7.439e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.561e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=15/46	total_cov=37/46
RA	282	.	NC_000913	3070858	0	T	G	consensus_score=255.5	frequency=1	major_base=G	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	283	.	NC_000913	3087508	0	C	T	consensus_score=264.2	frequency=1	major_base=T	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	284	.	NC_000913	3134479	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=290.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/42	major_frequency=9.880e-01	minor_base=G	minor_cov=0/1	new_cov=40/42	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/43
RA	285	.	NC_000913	3167148	0	G	A	consensus_score=220.6	frequency=1	major_base=A	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	286	.	NC_000913	3207549	0	G	.	consensus_score=369.2	frequency=1	major_base=.	major_cov=31/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/48
RA	287	.	NC_000913	3241106	0	A	G	consensus_score=273.7	frequency=1	major_base=G	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	288	.	NC_000913	3279276	0	C	G	consensus_score=288.8	frequency=1	major_base=G	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	289	.	NC_000913	3296481	0	G	A	consensus_score=269.2	frequency=1	major_base=A	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	290	.	NC_000913	3302338	0	C	A	consensus_score=228.2	frequency=1	major_base=A	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	291	.	NC_000913	3329743	0	G	T	bias_e_value=3735870	bias_p_value=0.804858	consensus_score=215.7	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/27	major_frequency=9.841e-01	minor_base=G	minor_cov=0/1	new_cov=35/27	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=35/28
RA	292	.	NC_000913	3388041	0	T	G	bias_e_value=4638300	bias_p_value=0.999278	consensus_score=319.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.962239	major_base=G	major_cov=43/43	major_frequency=9.885e-01	minor_base=T	minor_cov=0/1	new_cov=43/43	polymorphism_frequency=9.885e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=43/44
RA	293	.	NC_000913	3401345	0	G	T	bias_e_value=0.76179	bias_p_value=1.6412e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.7	fisher_strand_p_value=8.3743e-09	frequency=2.747e-01	ks_quality_p_value=1	major_base=G	major_cov=41/25	major_frequency=7.253e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.747e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=41/25	total_cov=41/50
RA	294	.	NC_000913	3411689	0	G	T	bias_e_value=3657660	bias_p_value=0.788009	consensus_score=343.5	fisher_strand_p_value=0.424242	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/41	major_frequency=9.899e-01	minor_base=G	minor_cov=0/1	new_cov=57/41	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/42
RA	295	.	NC_000913	3433900	0	C	T	consensus_score=324.5	frequency=1	major_base=T	major_cov=46/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/49
RA	296	.	NC_000913	3465502	0	G	A	consensus_score=347.8	frequency=1	major_base=A	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	297	.	NC_000913	3474424	0	T	G	consensus_score=275.2	frequency=1	major_base=G	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	298	.	NC_000913	3486502	0	C	T	consensus_score=314.2	frequency=1	major_base=T	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	299	.	NC_000913	3511466	0	C	T	consensus_score=297.8	frequency=1	major_base=T	major_cov=49/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/35
RA	300	.	NC_000913	3524913	0	C	T	consensus_score=260.7	frequency=1	major_base=T	major_cov=30/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/45
RA	301	.	NC_000913	3555047	0	G	T	consensus_score=306.8	frequency=1	major_base=T	major_cov=46/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/40
RA	302	.	NC_000913	3555048	0	T	G	consensus_score=324.3	frequency=1	major_base=G	major_cov=46/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/40
RA	303	.	NC_000913	3560455	1	.	G	bias_e_value=3659320	bias_p_value=0.788366	consensus_score=275.9	fisher_strand_p_value=0.432432	frequency=1	ks_quality_p_value=0.982022	major_base=G	major_cov=42/31	major_frequency=9.865e-01	minor_base=.	minor_cov=0/1	new_cov=42/31	polymorphism_frequency=9.865e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=42/32
RA	304	.	NC_000913	3581222	0	A	G	consensus_score=431.6	frequency=1	major_base=G	major_cov=42/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/75
RA	305	.	NC_000913	3599487	0	C	T	consensus_score=281.0	frequency=1	major_base=T	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	306	.	NC_000913	3602471	0	C	T	bias_e_value=3247010	bias_p_value=0.699537	consensus_score=152.7	fisher_strand_p_value=0.333333	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/15	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=32/15	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/16
RA	307	.	NC_000913	3618809	0	C	T	bias_e_value=3937580	bias_p_value=0.848315	consensus_score=297.2	fisher_strand_p_value=0.502521	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/37	major_frequency=9.765e-01	minor_base=C	minor_cov=2/0	new_cov=46/37	polymorphism_frequency=9.765e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=2/0	total_cov=48/37
RA	308	.	NC_000913	3620844	0	T	C	bias_e_value=3254680	bias_p_value=0.701191	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.8	fisher_strand_p_value=0.334842	frequency=5.294e-01	ks_quality_p_value=1	major_base=C	major_cov=7/2	major_frequency=5.294e-01	minor_base=T	minor_cov=4/4	new_cov=7/2	polymorphism_frequency=5.294e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=4/4	total_cov=11/7
RA	309	.	NC_000913	3620859	0	C	T	bias_e_value=3725960	bias_p_value=0.802723	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.5	fisher_strand_p_value=0.630468	frequency=5.556e-01	ks_quality_p_value=0.700784	major_base=T	major_cov=7/3	major_frequency=5.556e-01	minor_base=C	minor_cov=4/4	new_cov=7/3	polymorphism_frequency=5.556e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=4/4	total_cov=11/7
RA	310	.	NC_000913	3620862	0	C	T	bias_e_value=3066950	bias_p_value=0.660745	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.9	fisher_strand_p_value=0.334842	frequency=5.000e-01	ks_quality_p_value=0.894839	major_base=C	major_cov=4/5	major_frequency=5.000e-01	minor_base=T	minor_cov=7/2	new_cov=7/2	polymorphism_frequency=5.000e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=4/5	total_cov=11/7
RA	311	.	NC_000913	3620865	0	G	T	bias_e_value=3066950	bias_p_value=0.660745	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.6	fisher_strand_p_value=0.334842	frequency=5.000e-01	ks_quality_p_value=0.894839	major_base=G	major_cov=4/5	major_frequency=5.000e-01	minor_base=T	minor_cov=7/2	new_cov=7/2	polymorphism_frequency=5.000e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=4/5	total_cov=11/7
RA	312	.	NC_000913	3620869	0	A	G	bias_e_value=3168340	bias_p_value=0.68259	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.3	fisher_strand_p_value=0.349845	frequency=4.737e-01	ks_quality_p_value=0.909612	major_base=A	major_cov=5/5	major_frequency=5.263e-01	minor_base=G	minor_cov=7/2	new_cov=7/2	polymorphism_frequency=4.737e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=5/5	total_cov=12/7
RA	313	.	NC_000913	3623537	0	G	A	bias_e_value=1.57201	bias_p_value=3.38676e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.4	fisher_strand_p_value=1.79823e-08	frequency=2.051e-01	ks_quality_p_value=1	major_base=G	major_cov=55/38	major_frequency=7.949e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.051e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=55/38	total_cov=55/65
RA	314	.	NC_000913	3647428	0	C	T	consensus_score=248.0	frequency=1	major_base=T	major_cov=32/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/39
RA	315	.	NC_000913	3670329	0	C	T	consensus_score=265.4	frequency=1	major_base=T	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	316	.	NC_000913	3685480	0	C	T	consensus_score=317.1	frequency=1	major_base=T	major_cov=51/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/39
RA	317	.	NC_000913	3707947	0	C	A	consensus_score=381.2	frequency=1	major_base=A	major_cov=74/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/39
RA	318	.	NC_000913	3710473	0	C	A	bias_e_value=0.595855	bias_p_value=1.28371e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=285.4	fisher_strand_p_value=6.46482e-09	frequency=2.121e-01	ks_quality_p_value=1	major_base=C	major_cov=45/59	major_frequency=7.879e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.121e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=45/59	total_cov=73/59
RA	319	.	NC_000913	3719378	0	G	A	consensus_score=494.7	frequency=1	major_base=A	major_cov=61/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/79
RA	320	.	NC_000913	3719429	0	G	A	bias_e_value=3683410	bias_p_value=0.793556	consensus_score=441.6	fisher_strand_p_value=0.430769	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=55/74	major_frequency=9.923e-01	minor_base=C	minor_cov=1/0	new_cov=55/74	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/74
RA	321	.	NC_000913	3725176	0	T	G	consensus_score=338.6	frequency=1	major_base=G	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	322	.	NC_000913	3729440	0	C	T	consensus_score=222.0	frequency=1	major_base=T	major_cov=45/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/19
RA	323	.	NC_000913	3729441	0	C	T	bias_e_value=3051480	bias_p_value=0.657413	consensus_score=218.8	fisher_strand_p_value=0.296875	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/18	major_frequency=9.844e-01	minor_base=C	minor_cov=0/1	new_cov=45/18	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=45/19
RA	324	.	NC_000913	3730560	0	C	T	consensus_score=272.8	frequency=1	major_base=T	major_cov=38/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/50
RA	325	.	NC_000913	3737783	0	C	T	consensus_score=282.7	frequency=1	major_base=T	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	326	.	NC_000913	3741871	0	G	T	bias_e_value=0.000560653	bias_p_value=1.20787e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.8	fisher_strand_p_value=4.45087e-12	frequency=3.945e-01	ks_quality_p_value=1	major_base=G	major_cov=39/27	major_frequency=6.055e-01	minor_base=T	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=3.945e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=39/27	total_cov=39/70
RA	327	.	NC_000913	3768435	0	C	A	bias_e_value=1.75322e-05	bias_p_value=3.77714e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=363.9	fisher_strand_p_value=1.22925e-13	frequency=2.249e-01	ks_quality_p_value=1	major_base=C	major_cov=50/81	major_frequency=7.751e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.249e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=50/81	total_cov=88/81
RA	328	.	NC_000913	3770539	0	C	T	consensus_score=284.7	frequency=1	major_base=T	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	329	.	NC_000913	3772207	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=357.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/54	major_frequency=9.905e-01	minor_base=G	minor_cov=0/1	new_cov=50/54	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/55
RA	330	.	NC_000913	3773173	0	G	.	bias_e_value=4641650	bias_p_value=1	consensus_score=521.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=60/50	major_frequency=9.821e-01	minor_base=G	minor_cov=1/1	new_cov=60/50	polymorphism_frequency=9.821e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=1/1	total_cov=62/51
RA	331	.	NC_000913	3773176	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=418.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=62/53	major_frequency=9.914e-01	minor_base=C	minor_cov=1/0	new_cov=62/53	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=63/53
RA	332	.	NC_000913	3815883	1	.	C	bias_e_value=1290330	bias_p_value=0.277989	consensus_score=336.7	fisher_strand_p_value=0.0813269	frequency=1	ks_quality_p_value=0.963952	major_base=C	major_cov=37/51	major_frequency=9.670e-01	minor_base=.	minor_cov=3/0	new_cov=37/51	polymorphism_frequency=9.670e-01	polymorphism_score=2.2	prediction=consensus	ref_cov=3/0	total_cov=41/51
RA	333	.	NC_000913	3911533	0	C	A	bias_e_value=4.32711e-06	bias_p_value=9.32235e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.2	fisher_strand_p_value=2.89763e-14	frequency=4.098e-01	ks_quality_p_value=1	major_base=C	major_cov=28/44	major_frequency=5.902e-01	minor_base=A	minor_cov=50/0	new_cov=50/0	polymorphism_frequency=4.098e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=28/44	total_cov=78/44
RA	334	.	NC_000913	3926991	0	G	A	consensus_score=403.7	frequency=1	major_base=A	major_cov=82/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/40
RA	335	.	NC_000913	3966530	0	C	T	bias_e_value=3819180	bias_p_value=0.822806	consensus_score=363.5	fisher_strand_p_value=0.46729	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/57	major_frequency=9.907e-01	minor_base=C	minor_cov=1/0	new_cov=49/57	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/57
RA	336	.	NC_000913	3966531	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=374.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/56	major_frequency=9.907e-01	minor_base=G	minor_cov=0/1	new_cov=50/56	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/57
RA	337	.	NC_000913	4037496	0	A	T	bias_e_value=1283330	bias_p_value=0.276482	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.6	fisher_strand_p_value=0.0778041	frequency=4.806e-01	ks_quality_p_value=1	major_base=A	major_cov=37/30	major_frequency=5.194e-01	minor_base=T	minor_cov=24/38	new_cov=24/38	polymorphism_frequency=4.806e-01	polymorphism_score=256.9	prediction=polymorphism	ref_cov=37/30	total_cov=62/68
RA	338	.	NC_000913	4081749	0	G	A	bias_e_value=3407960	bias_p_value=0.734213	consensus_score=377.1	fisher_strand_p_value=0.366337	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/64	major_frequency=9.901e-01	minor_base=C	minor_cov=1/0	new_cov=36/64	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/64
RA	339	.	NC_000913	4095026	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=238.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/37	major_frequency=9.853e-01	minor_base=G	minor_cov=0/1	new_cov=30/37	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/38
RA	340	.	NC_000913	4096144	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=212.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/30	major_frequency=9.841e-01	minor_base=C	minor_cov=1/0	new_cov=32/30	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	341	.	NC_000913	4133270	0	C	T	bias_e_value=4641200	bias_p_value=0.999902	consensus_score=317.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986063	major_base=T	major_cov=44/51	major_frequency=9.896e-01	minor_base=G	minor_cov=0/1	new_cov=44/51	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	342	.	NC_000913	4138436	0	C	T	consensus_score=227.7	frequency=1	major_base=T	major_cov=32/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/39
RA	343	.	NC_000913	4145137	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=254.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/31	major_frequency=9.722e-01	minor_base=C	minor_cov=1/1	new_cov=39/31	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=40/33
RA	344	.	NC_000913	4166554	0	C	T	consensus_score=28.9	frequency=1	major_base=T	major_cov=5/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/6
RA	345	.	NC_000913	4213310	0	G	T	bias_e_value=0.0336641	bias_p_value=7.25261e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.9	fisher_strand_p_value=3.17098e-10	frequency=3.063e-01	ks_quality_p_value=1	major_base=G	major_cov=45/32	major_frequency=6.937e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.063e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=45/32	total_cov=45/66
RA	346	.	NC_000913	4223638	0	T	C	bias_e_value=2824290	bias_p_value=0.608467	consensus_score=402.9	fisher_strand_p_value=0.258687	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=61/48	major_frequency=9.732e-01	minor_base=A	minor_cov=3/0	new_cov=61/48	polymorphism_frequency=9.732e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/48
RA	347	.	NC_000913	4256705	0	C	T	consensus_score=422.1	frequency=1	major_base=T	major_cov=58/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/63
RA	348	.	NC_000913	4259570	0	G	A	consensus_score=284.7	frequency=1	major_base=A	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	349	.	NC_000913	4296190	0	A	G	bias_e_value=3696030	bias_p_value=0.796274	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.5	fisher_strand_p_value=0.62785	frequency=2.308e-01	ks_quality_p_value=0.691266	major_base=A	major_cov=6/14	major_frequency=7.692e-01	minor_base=G	minor_cov=3/3	new_cov=3/3	polymorphism_frequency=2.308e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=6/14	total_cov=9/17
RA	350	.	NC_000913	4296191	0	A	C	bias_e_value=2331800	bias_p_value=0.502363	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.6	fisher_strand_p_value=0.188094	frequency=2.692e-01	ks_quality_p_value=1	major_base=A	major_cov=5/14	major_frequency=7.308e-01	minor_base=C	minor_cov=4/3	new_cov=4/3	polymorphism_frequency=2.692e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=5/14	total_cov=9/17
RA	351	.	NC_000913	4296380	1	.	C	bias_e_value=646254	bias_p_value=0.139229	consensus_score=169.2	fisher_strand_p_value=0.0311563	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=31/20	major_frequency=9.273e-01	minor_base=T	minor_cov=0/4	new_cov=31/20	polymorphism_frequency=9.273e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=32/24
RA	352	.	NC_000913	4296380	2	.	G	bias_e_value=4641400	bias_p_value=0.999946	consensus_score=187.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.989664	major_base=G	major_cov=31/24	major_frequency=9.821e-01	minor_base=.	minor_cov=1/0	new_cov=31/24	polymorphism_frequency=9.821e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=1/0	total_cov=32/24
RA	353	.	NC_000913	4307944	0	C	T	consensus_score=332.1	frequency=1	major_base=T	major_cov=53/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	354	.	NC_000913	4322288	0	A	G	bias_e_value=3665550	bias_p_value=0.789708	consensus_score=207.7	fisher_strand_p_value=0.42623	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=35/25	major_frequency=9.836e-01	minor_base=T	minor_cov=0/1	new_cov=35/25	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	355	.	NC_000913	4325000	0	C	T	consensus_score=218.8	frequency=1	major_base=T	major_cov=43/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/17
RA	356	.	NC_000913	4325644	0	C	T	consensus_score=216.9	frequency=1	major_base=T	major_cov=29/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/40
RA	357	.	NC_000913	4331890	0	C	T	consensus_score=281.4	frequency=1	major_base=T	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	358	.	NC_000913	4360965	0	C	A	bias_e_value=3.30987e-08	bias_p_value=7.13079e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.6	fisher_strand_p_value=1.91737e-16	frequency=2.450e-01	ks_quality_p_value=1	major_base=C	major_cov=32/82	major_frequency=7.550e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.450e-01	polymorphism_score=27.2	prediction=polymorphism	ref_cov=32/82	total_cov=69/82
RA	359	.	NC_000913	4437890	0	C	T	bias_e_value=3921910	bias_p_value=0.844937	consensus_score=570.3	fisher_strand_p_value=0.497648	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=81/85	major_frequency=9.881e-01	minor_base=G	minor_cov=0/2	new_cov=81/85	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/87
RA	360	.	NC_000913	4473900	0	C	T	bias_e_value=4641270	bias_p_value=0.999919	consensus_score=302.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.987281	major_base=T	major_cov=37/50	major_frequency=9.886e-01	minor_base=.	minor_cov=0/1	new_cov=37/50	polymorphism_frequency=9.886e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=0/0	total_cov=37/51
RA	361	.	NC_000913	4475493	0	T	C	bias_e_value=2531320	bias_p_value=0.545349	consensus_score=472.4	fisher_strand_p_value=0.214915	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=59/70	major_frequency=9.847e-01	minor_base=A	minor_cov=2/0	new_cov=59/70	polymorphism_frequency=9.847e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/70
RA	362	.	NC_000913	4476605	0	G	A	consensus_score=377.7	frequency=1	major_base=A	major_cov=61/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/52
RA	363	.	NC_000913	4489016	0	C	T	consensus_score=370.4	frequency=1	major_base=T	major_cov=58/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/48
RA	364	.	NC_000913	4510238	0	T	G	bias_e_value=507798	bias_p_value=0.1094	consensus_score=420.0	fisher_strand_p_value=0.0229041	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=73/44	major_frequency=9.669e-01	minor_base=T	minor_cov=0/4	new_cov=73/44	polymorphism_frequency=9.669e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/4	total_cov=74/48
RA	365	.	NC_000913	4532409	0	T	G	bias_e_value=3735870	bias_p_value=0.804858	consensus_score=259.9	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=31/40	major_frequency=9.861e-01	minor_base=T	minor_cov=1/0	new_cov=31/40	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/40
RA	366	.	NC_000913	4546601	0	C	T	consensus_score=319.4	frequency=1	major_base=T	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	367	.	NC_000913	4591947	0	G	T	bias_e_value=3580340	bias_p_value=0.77135	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.3	fisher_strand_p_value=0.501452	frequency=3.488e-01	ks_quality_p_value=0.808281	major_base=G	major_cov=31/25	major_frequency=6.512e-01	minor_base=T	minor_cov=19/11	new_cov=19/11	polymorphism_frequency=3.488e-01	polymorphism_score=77.1	prediction=polymorphism	ref_cov=31/25	total_cov=50/36
RA	368	.	NC_000913	4636925	0	G	C	consensus_score=257.2	frequency=1	major_base=C	major_cov=36/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	369	.	NC_000913	4638240	0	G	A	bias_e_value=4636810	bias_p_value=0.998956	consensus_score=214.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.954659	major_base=A	major_cov=40/24	major_frequency=9.697e-01	minor_base=G	minor_cov=1/1	new_cov=40/24	polymorphism_frequency=9.697e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/1	total_cov=42/25
MC	370	.	NC_000913	257908	258683	764	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=3	right_outside_cov=88
MC	371	.	NC_000913	275509	359482	0	0	left_inside_cov=0	left_outside_cov=67	right_inside_cov=0	right_outside_cov=155
MC	372	.	NC_000913	366298	372748	0	0	left_inside_cov=0	left_outside_cov=1156	right_inside_cov=2	right_outside_cov=69
MC	373	.	NC_000913	574849	579183	941	0	left_inside_cov=18	left_outside_cov=20	right_inside_cov=0	right_outside_cov=118
MC	374	.	NC_000913	731314	732107	179	117	left_inside_cov=18	left_outside_cov=20	right_inside_cov=15	right_outside_cov=19
MC	375	.	NC_000913	1196316	1211436	0	0	left_inside_cov=18	left_outside_cov=19	right_inside_cov=18	right_outside_cov=20
MC	376	.	NC_000913	1978503	1979336	764	0	left_inside_cov=0	left_outside_cov=142	right_inside_cov=0	right_outside_cov=138
MC	377	.	NC_000913	2170386	2177386	1041	0	left_inside_cov=16	left_outside_cov=19	right_inside_cov=0	right_outside_cov=56
MC	378	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=63	right_inside_cov=1	right_outside_cov=64
MC	379	.	NC_000913	3423895	3424477	339	238	left_inside_cov=18	left_outside_cov=19	right_inside_cov=18	right_outside_cov=21
JC	380	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=297	max_left_minus=297	max_left_plus=228	max_min_left=147	max_min_left_minus=138	max_min_left_plus=147	max_min_right=145	max_min_right_minus=145	max_min_right_plus=144	max_pos_hash_score=588	max_right=284	max_right_minus=266	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.40	new_junction_read_count=113	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=109
JC	381	.	NC_000913	209134	-1	NC_000913	209264	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.177e-02	junction_possible_overlap_registers=283	key=NC_000913__209134__-1__NC_000913__209253__1__11____300__300__0__0	max_left=276	max_left_minus=276	max_left_plus=96	max_min_left=96	max_min_left_minus=0	max_min_left_plus=96	max_min_right=64	max_min_right_minus=64	max_min_right_plus=0	max_pos_hash_score=566	max_right=192	max_right_minus=64	max_right_plus=192	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.177e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=3
JC	382	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=39	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=284	max_min_left=120	max_min_left_minus=94	max_min_left_plus=120	max_min_right=144	max_min_right_minus=143	max_min_right_plus=144	max_pos_hash_score=572	max_right=287	max_right_minus=287	max_right_plus=279	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=86	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	383	.	NC_000913	275149	-1	NC_000913	579184	1	0	alignment_overlap=0	coverage_minus=71	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__275149__-1__NC_000913__579184__1__0____300__300__1__0	max_left=283	max_left_minus=282	max_left_plus=283	max_min_left=141	max_min_left_minus=141	max_min_left_plus=126	max_min_right=149	max_min_right_minus=149	max_min_right_plus=142	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=290	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.47	new_junction_read_count=118	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=116
JC	384	.	NC_000913	275508	-1	NC_000913	372749	1	0	alignment_overlap=10	coverage_minus=38	coverage_plus=29	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=284	key=NC_000913__275508__-1__NC_000913__372739__1__10____300__300__0__0	max_left=286	max_left_minus=274	max_left_plus=286	max_min_left=135	max_min_left_minus=135	max_min_left_plus=80	max_min_right=142	max_min_right_minus=142	max_min_right_plus=131	max_pos_hash_score=568	max_right=289	max_right_minus=289	max_right_plus=287	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.86	new_junction_read_count=67	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	385	.	NC_000913	360151	-1	NC_000913	360797	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.932e-03	junction_possible_overlap_registers=283	key=NC_000913__360151__-1__NC_000913__360786__1__11____300__300__0__0	max_left=112	max_left_minus=112	max_left_plus=24	max_min_left=35	max_min_left_minus=35	max_min_left_plus=24	max_min_right=39	max_min_right_minus=39	max_min_right_plus=9	max_pos_hash_score=566	max_right=84	max_right_minus=84	max_right_plus=84	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=6.932e-03	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=12.72	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=1024	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=13.17	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=1020	side_2_redundant=0	total_non_overlap_reads=7
JC	386	.	NC_000913	360288	-1	NC_000913	360403	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=3.967e-03	junction_possible_overlap_registers=288	key=NC_000913__360288__-1__NC_000913__360397__1__6____300__300__0__0	max_left=133	max_left_minus=133	max_left_plus=130	max_min_left=133	max_min_left_minus=133	max_min_left_plus=130	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=576	max_right=290	max_right_minus=150	max_right_plus=290	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.967e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=12.90	side_1_overlap=6	side_1_possible_overlap_registers=294	side_1_read_count=1038	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=12.58	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=992	side_2_redundant=0	total_non_overlap_reads=4
JC	387	.	NC_000913	363655	-1	NC_000913	364258	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.366e-03	junction_possible_overlap_registers=285	key=NC_000913__363655__-1__NC_000913__364249__1__9____300__300__0__0	max_left=290	max_left_minus=287	max_left_plus=290	max_min_left=48	max_min_left_minus=48	max_min_left_plus=48	max_min_right=1	max_min_right_minus=1	max_min_right_plus=1	max_pos_hash_score=570	max_right=85	max_right_minus=85	max_right_plus=85	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.366e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=11.60	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=934	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=11.78	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=919	side_2_redundant=0	total_non_overlap_reads=4
JC	388	.	NC_000913	366297	-1	NC_000913	1317047	1	0	alignment_overlap=1	coverage_minus=631	coverage_plus=466	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__366297__-1__NC_000913__1317046__1__1____300__300__0__0	max_left=298	max_left_minus=297	max_left_plus=298	max_min_left=147	max_min_left_minus=147	max_min_left_plus=146	max_min_right=149	max_min_right_minus=148	max_min_right_plus=149	max_pos_hash_score=586	max_right=298	max_right_minus=298	max_right_plus=298	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=14.21	new_junction_read_count=1140	polymorphism_frequency=9.781e-01	pos_hash_score=262	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=51	side_2_redundant=0	total_non_overlap_reads=1097
JC	389	.	NC_000913	732239	-1	NC_000913	3622029	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.194e-01	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0	max_left=147	max_left_minus=147	max_left_plus=118	max_min_left=118	max_min_left_minus=0	max_min_left_plus=118	max_min_right=139	max_min_right_minus=139	max_min_right_plus=0	max_pos_hash_score=564	max_right=247	max_right_minus=139	max_right_plus=247	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=1.194e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=3
JC	390	.	NC_000913	732239	-1	NC_000913	3765020	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.218e-01	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0	max_left=147	max_left_minus=147	max_left_plus=118	max_min_left=118	max_min_left_minus=0	max_min_left_plus=118	max_min_right=139	max_min_right_minus=139	max_min_right_plus=0	max_pos_hash_score=564	max_right=247	max_right_minus=139	max_right_plus=247	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=1.218e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=3
JC	391	.	NC_000913	732408	1	NC_000913	3621836	-1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.424e-02	junction_possible_overlap_registers=282	key=NC_000913__732408__1__NC_000913__3621848__-1__12____300__300__0__1	max_left=168	max_left_minus=0	max_left_plus=168	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=140	max_min_right_minus=0	max_min_right_plus=140	max_pos_hash_score=564	max_right=260	max_right_minus=0	max_right_plus=260	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=7.424e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	392	.	NC_000913	781322	-1	NC_000913	781811	1	0	alignment_overlap=39	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=9.095e-02	junction_possible_overlap_registers=255	key=NC_000913__781322__-1__NC_000913__781772__1__39____300__300__0__0	max_left=123	max_left_minus=123	max_left_plus=85	max_min_left=37	max_min_left_minus=0	max_min_left_plus=37	max_min_right=56	max_min_right_minus=56	max_min_right_plus=56	max_pos_hash_score=510	max_right=88	max_right_minus=56	max_right_plus=88	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=9.095e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.47	side_1_overlap=39	side_1_possible_overlap_registers=294	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=255	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=4
JC	393	.	NC_000913	1293196	1	NC_000913	1428794	-1	0	alignment_overlap=0	coverage_minus=32	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1293196__1__NC_000913__1428794__-1__0____300__300__0__0	max_left=294	max_left_minus=290	max_left_plus=294	max_min_left=150	max_min_left_minus=135	max_min_left_plus=150	max_min_right=141	max_min_right_minus=141	max_min_right_plus=130	max_pos_hash_score=588	max_right=297	max_right_minus=295	max_right_plus=297	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.83	new_junction_read_count=67	polymorphism_frequency=9.706e-01	pos_hash_score=41	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=65
JC	394	.	NC_000913	1293199	-1	NC_000913	1427599	1	0	alignment_overlap=2	coverage_minus=52	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1293199__-1__NC_000913__1427597__1__2____300__300__0__0	max_left=296	max_left_minus=286	max_left_plus=296	max_min_left=141	max_min_left_minus=123	max_min_left_plus=141	max_min_right=142	max_min_right_minus=142	max_min_right_plus=112	max_pos_hash_score=584	max_right=295	max_right_minus=295	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.30	new_junction_read_count=104	polymorphism_frequency=9.810e-01	pos_hash_score=64	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=2	side_1_possible_overlap_registers=290	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=103
JC	395	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=44	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=286	max_left_minus=284	max_left_plus=286	max_min_left=146	max_min_left_minus=139	max_min_left_plus=146	max_min_right=140	max_min_right_minus=119	max_min_right_plus=140	max_pos_hash_score=580	max_right=291	max_right_minus=291	max_right_plus=266	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=88
JC	396	.	NC_000913	1397241	-1	NC_000913	1978502	-1	-59	alignment_overlap=-59	coverage_minus=60	coverage_plus=65	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__1397241__-1__NC_000913__1978502__-1__-59__GCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATA__300__300__1__0	max_left=240	max_left_minus=236	max_left_plus=240	max_min_left=115	max_min_left_minus=115	max_min_left_plus=111	max_min_right=113	max_min_right_minus=113	max_min_right_plus=112	max_pos_hash_score=470	max_right=232	max_right_minus=232	max_right_plus=203	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=2.01	new_junction_read_count=129	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=125	unique_read_sequence=GCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATA
JC	397	.	NC_000913	1513915	-1	NC_000913	1514390	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.212e-02	junction_possible_overlap_registers=284	key=NC_000913__1513915__-1__NC_000913__1514380__1__10____300__300__0__0	max_left=107	max_left_minus=107	max_left_plus=51	max_min_left=107	max_min_left_minus=107	max_min_left_plus=51	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=568	max_right=143	max_right_minus=136	max_right_plus=143	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.212e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=3
JC	398	.	NC_000913	1740692	-1	NC_000913	1740909	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.304e-02	junction_possible_overlap_registers=284	key=NC_000913__1740692__-1__NC_000913__1740899__1__10____300__300__0__0	max_left=191	max_left_minus=191	max_left_plus=65	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=141	max_min_right_minus=141	max_min_right_plus=0	max_pos_hash_score=568	max_right=221	max_right_minus=141	max_right_plus=221	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.304e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=3
JC	399	.	NC_000913	1879829	1	NC_000913	2515616	-1	0	alignment_overlap=2	coverage_minus=17	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1879827__1__NC_000913__2515616__-1__2____300__300__0__1	max_left=295	max_left_minus=290	max_left_plus=295	max_min_left=138	max_min_left_minus=127	max_min_left_plus=138	max_min_right=144	max_min_right_minus=122	max_min_right_plus=144	max_pos_hash_score=584	max_right=289	max_right_minus=289	max_right_plus=286	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.63	new_junction_read_count=50	polymorphism_frequency=9.423e-01	pos_hash_score=37	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=286	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=50
JC	400	.	NC_000913	1879834	-1	NC_000913	2514274	1	0	alignment_overlap=3	coverage_minus=30	coverage_plus=26	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1879837__-1__NC_000913__2514274__1__3____300__300__0__1	max_left=289	max_left_minus=271	max_left_plus=289	max_min_left=145	max_min_left_minus=145	max_min_left_plus=126	max_min_right=145	max_min_right_minus=145	max_min_right_plus=122	max_pos_hash_score=582	max_right=292	max_right_minus=284	max_right_plus=292	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.72	new_junction_read_count=57	polymorphism_frequency=9.654e-01	pos_hash_score=41	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=285	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=3	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=56
JC	401	.	NC_000913	1978503	1	NC_000913	2094553	1	0	alignment_overlap=0	coverage_minus=54	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1978503__1__NC_000913__2094553__1__0____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=291	max_min_left=147	max_min_left_minus=139	max_min_left_plus=147	max_min_right=149	max_min_right_minus=149	max_min_right_plus=128	max_pos_hash_score=588	max_right=297	max_right_minus=293	max_right_plus=297	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.21	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	402	.	NC_000913	1979270	-1	NC_000913	2094561	-1	0	alignment_overlap=0	coverage_minus=46	coverage_plus=54	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979270__-1__NC_000913__2094561__-1__0____300__300__1__0	max_left=287	max_left_minus=276	max_left_plus=287	max_min_left=148	max_min_left_minus=148	max_min_left_plus=137	max_min_right=148	max_min_right_minus=148	max_min_right_plus=124	max_pos_hash_score=588	max_right=292	max_right_minus=292	max_right_plus=287	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=100
JC	403	.	NC_000913	1979337	1	NC_000913	2102943	-1	0	alignment_overlap=0	coverage_minus=45	coverage_plus=90	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979337__1__NC_000913__2102943__-1__0____300__300__0__1	max_left=296	max_left_minus=279	max_left_plus=296	max_min_left=149	max_min_left_minus=138	max_min_left_plus=149	max_min_right=146	max_min_right_minus=139	max_min_right_plus=146	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=289	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.71	new_junction_read_count=138	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=135
JC	404	.	NC_000913	2170171	1	NC_000913	4440465	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2170171__1__NC_000913__4440465__1__0____300__300__1__0	max_left=291	max_left_minus=279	max_left_plus=291	max_min_left=140	max_min_left_minus=140	max_min_left_plus=137	max_min_right=149	max_min_right_minus=149	max_min_right_plus=128	max_pos_hash_score=588	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.98	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=79
JC	405	.	NC_000913	2171428	-1	NC_000913	2177387	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2171428__-1__NC_000913__2177387__1__0____300__300__1__0	max_left=291	max_left_minus=276	max_left_plus=291	max_min_left=145	max_min_left_minus=129	max_min_left_plus=145	max_min_right=128	max_min_right_minus=128	max_min_right_plus=115	max_pos_hash_score=588	max_right=287	max_right_minus=278	max_right_plus=287	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.68	new_junction_read_count=55	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=54
JC	406	.	NC_000913	2171428	-1	NC_000913	4440467	-1	0	alignment_overlap=1	coverage_minus=41	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2171428__-1__NC_000913__4440468__-1__1____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=246	max_min_left=146	max_min_left_minus=146	max_min_left_plus=123	max_min_right=144	max_min_right_minus=130	max_min_right_plus=144	max_pos_hash_score=586	max_right=294	max_right_minus=294	max_right_plus=288	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=89	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=87
JC	407	.	NC_000913	2288915	1	NC_000913	4044851	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2288914__1__NC_000913__4044851__1__1____300__300__0__0	max_left=244	max_left_minus=0	max_left_plus=244	max_min_left=138	max_min_left_minus=0	max_min_left_plus=138	max_min_right=54	max_min_right_minus=0	max_min_right_plus=54	max_pos_hash_score=586	max_right=212	max_right_minus=0	max_right_plus=212	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=8.576e-01	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=6
JC	408	.	NC_000913	2357730	-1	NC_000913	2357926	1	0	alignment_overlap=40	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.533e-02	junction_possible_overlap_registers=254	key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0	max_left=244	max_left_minus=180	max_left_plus=244	max_min_left=108	max_min_left_minus=43	max_min_left_plus=108	max_min_right=108	max_min_right_minus=108	max_min_right_plus=2	max_pos_hash_score=508	max_right=251	max_right_minus=108	max_right_plus=251	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.10	new_junction_read_count=7	polymorphism_frequency=8.533e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=40	side_1_possible_overlap_registers=294	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=7
JC	409	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=31	coverage_plus=29	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=269	max_left_minus=269	max_left_plus=229	max_min_left=145	max_min_left_minus=145	max_min_left_plus=134	max_min_right=139	max_min_right_minus=134	max_min_right_plus=139	max_pos_hash_score=572	max_right=286	max_right_minus=286	max_right_plus=286	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.80	new_junction_read_count=63	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60
JC	410	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=5	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.549e-01	junction_possible_overlap_registers=269	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=144	max_left_minus=144	max_left_plus=110	max_min_left=103	max_min_left_minus=103	max_min_left_plus=103	max_min_right=106	max_min_right_minus=106	max_min_right_plus=106	max_pos_hash_score=538	max_right=262	max_right_minus=203	max_right_plus=262	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.16	new_junction_read_count=12	polymorphism_frequency=1.549e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=11
JC	411	.	NC_000913	2904039	-1	NC_000913	2904345	1	0	alignment_overlap=26	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.885e-02	junction_possible_overlap_registers=268	key=NC_000913__2904039__-1__NC_000913__2904319__1__26____300__300__0__0	max_left=212	max_left_minus=212	max_left_plus=204	max_min_left=107	max_min_left_minus=107	max_min_left_plus=107	max_min_right=70	max_min_right_minus=62	max_min_right_plus=70	max_pos_hash_score=536	max_right=171	max_right_minus=171	max_right_plus=163	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=7.885e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=26	side_1_possible_overlap_registers=294	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=5
JC	412	.	NC_000913	2944325	-1	NC_000913	2944820	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.023e-02	junction_possible_overlap_registers=284	key=NC_000913__2944325__-1__NC_000913__2944810__1__10____300__300__0__0	max_left=147	max_left_minus=147	max_left_plus=84	max_min_left=84	max_min_left_minus=84	max_min_left_plus=84	max_min_right=44	max_min_right_minus=44	max_min_right_plus=0	max_pos_hash_score=568	max_right=119	max_right_minus=119	max_right_plus=119	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.023e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=3
JC	413	.	NC_000913	2975173	-1	NC_000913	2975485	1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.570e-02	junction_possible_overlap_registers=288	key=NC_000913__2975173__-1__NC_000913__2975479__1__6____300__300__0__0	max_left=154	max_left_minus=154	max_left_plus=154	max_min_left=48	max_min_left_minus=48	max_min_left_plus=48	max_min_right=99	max_min_right_minus=99	max_min_right_plus=99	max_pos_hash_score=576	max_right=124	max_right_minus=124	max_right_plus=124	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.570e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=6	side_1_possible_overlap_registers=294	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=4
JC	414	.	NC_000913	3187426	-1	NC_000913	4124494	1	0	alignment_overlap=0	coverage_minus=47	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3187426__-1__NC_000913__4124494__1__0____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=288	max_min_left=149	max_min_left_minus=149	max_min_left_plus=135	max_min_right=148	max_min_right_minus=146	max_min_right_plus=148	max_pos_hash_score=588	max_right=293	max_right_minus=267	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97
JC	415	.	NC_000913	3621836	-1	NC_000913	3622017	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.816e-01	junction_possible_overlap_registers=282	key=NC_000913__3621848__-1__NC_000913__3622017__1__12____300__300__1__0	max_left=260	max_left_minus=260	max_left_plus=118	max_min_left=118	max_min_left_minus=0	max_min_left_plus=118	max_min_right=139	max_min_right_minus=139	max_min_right_plus=0	max_pos_hash_score=564	max_right=247	max_right_minus=139	max_right_plus=247	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.816e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=12	side_2_possible_overlap_registers=294	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=4
JC	416	.	NC_000913	3652036	1	NC_000913	4044847	1	0	alignment_overlap=0	coverage_minus=50	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3652036__1__NC_000913__4044847__1__0____300__300__1__0	max_left=294	max_left_minus=285	max_left_plus=294	max_min_left=117	max_min_left_minus=117	max_min_left_plus=107	max_min_right=148	max_min_right_minus=146	max_min_right_plus=148	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=280	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.28	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102
JC	417	.	NC_000913	3653230	-1	NC_000913	4044850	-1	0	alignment_overlap=0	coverage_minus=64	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3653230__-1__NC_000913__4044850__-1__0____300__300__1__0	max_left=295	max_left_minus=288	max_left_plus=295	max_min_left=131	max_min_left_minus=130	max_min_left_plus=131	max_min_right=149	max_min_right_minus=149	max_min_right_plus=137	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=289	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.32	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104
JC	418	.	NC_000913	3764827	-1	NC_000913	3765008	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.759e-01	junction_possible_overlap_registers=282	key=NC_000913__3764839__-1__NC_000913__3765008__1__12____300__300__1__0	max_left=260	max_left_minus=260	max_left_plus=118	max_min_left=118	max_min_left_minus=0	max_min_left_plus=118	max_min_right=139	max_min_right_minus=139	max_min_right_plus=0	max_pos_hash_score=564	max_right=247	max_right_minus=139	max_right_plus=247	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.759e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=12	side_2_possible_overlap_registers=294	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=4
JC	419	.	NC_000913	3991828	-1	NC_000913	3992411	1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.390e-02	junction_possible_overlap_registers=281	key=NC_000913__3991828__-1__NC_000913__3992398__1__13____300__300__0__0	max_left=77	max_left_minus=77	max_left_plus=77	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=40	max_min_right_minus=35	max_min_right_plus=40	max_pos_hash_score=562	max_right=40	max_right_minus=35	max_right_plus=40	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.390e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=13	side_1_possible_overlap_registers=294	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4
JC	420	.	NC_000913	4124498	-1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=31	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__4124499__-1__NC_000913__4498181__1__1____300__300__0__1	max_left=295	max_left_minus=258	max_left_plus=295	max_min_left=135	max_min_left_minus=135	max_min_left_plus=134	max_min_right=142	max_min_right_minus=131	max_min_right_plus=142	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=283	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.01	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=80
JC	421	.	NC_000913	4297233	-1	NC_000913	4297582	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.423e-02	junction_possible_overlap_registers=282	key=NC_000913__4297233__-1__NC_000913__4297570__1__12____300__300__0__0	max_left=153	max_left_minus=153	max_left_plus=153	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=82	max_min_right_minus=82	max_min_right_plus=82	max_pos_hash_score=564	max_right=159	max_right_minus=82	max_right_plus=159	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.423e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=3
JC	422	.	NC_000913	4507459	1	NC_000913	4640419	-1	0	alignment_overlap=2	coverage_minus=58	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__4507459__1__NC_000913__4640421__-1__2____300__300__1__0	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=143	max_min_left_minus=138	max_min_left_plus=143	max_min_right=145	max_min_right_minus=145	max_min_right_plus=129	max_pos_hash_score=584	max_right=295	max_right_minus=275	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.40	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=2	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104
JC	423	.	NC_000913	4508679	-1	NC_000913	4640418	1	0	alignment_overlap=1	coverage_minus=51	coverage_plus=28	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__4508679__-1__NC_000913__4640417__1__1____300__300__1__0	max_left=289	max_left_minus=252	max_left_plus=289	max_min_left=140	max_min_left_minus=140	max_min_left_plus=127	max_min_right=145	max_min_right_minus=145	max_min_right_plus=145	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=293	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.02	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	read_count_offset=2	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=79
JC	424	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=6	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.769e-02	junction_possible_overlap_registers=285	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=284	max_left_minus=284	max_left_plus=29	max_min_left=136	max_min_left_minus=136	max_min_left_plus=29	max_min_right=136	max_min_right_minus=136	max_min_right_plus=0	max_pos_hash_score=570	max_right=276	max_right_minus=149	max_right_plus=276	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=6.769e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.48	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=119	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=105	side_2_redundant=0	total_non_overlap_reads=8
JC	425	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.565e-01	junction_possible_overlap_registers=205	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=134	max_left_minus=134	max_left_plus=86	max_min_left=93	max_min_left_minus=93	max_min_left_plus=86	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_pos_hash_score=410	max_right=158	max_right_minus=157	max_right_plus=158	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.18	new_junction_read_count=10	polymorphism_frequency=1.565e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=89	side_1_possible_overlap_registers=294	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=10
UN	426	.	NC_000913	15632	15632
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UN	433	.	NC_000913	227262	227262
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UN	437	.	NC_000913	271046	271046
UN	438	.	NC_000913	274237	274237
UN	439	.	NC_000913	274245	274245
UN	440	.	NC_000913	274247	274863
UN	441	.	NC_000913	275509	359483
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UN	443	.	NC_000913	381526	382335
UN	444	.	NC_000913	382337	382337
UN	445	.	NC_000913	391973	392690
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UN	449	.	NC_000913	526093	526459
UN	450	.	NC_000913	567034	567034
UN	451	.	NC_000913	567042	567042
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UN	455	.	NC_000913	608271	608271
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UN	458	.	NC_000913	608279	608280
UN	459	.	NC_000913	608283	609092
UN	460	.	NC_000913	688128	688768
UN	461	.	NC_000913	731377	731379
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UN	463	.	NC_000913	731390	731390
UN	464	.	NC_000913	731395	731397
UN	465	.	NC_000913	731404	731405
UN	466	.	NC_000913	731411	732029
UN	467	.	NC_000913	732031	732035
UN	468	.	NC_000913	732038	732038
UN	469	.	NC_000913	732041	732041
UN	470	.	NC_000913	732047	732047
UN	471	.	NC_000913	732049	732049
UN	472	.	NC_000913	1094509	1095224
UN	473	.	NC_000913	1095228	1095229
UN	474	.	NC_000913	1196369	1211413
UN	475	.	NC_000913	1299499	1300697
UN	476	.	NC_000913	1396320	1396982
UN	477	.	NC_000913	1396986	1396987
UN	478	.	NC_000913	1468157	1468967
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UN	480	.	NC_000913	1470232	1470233
UN	481	.	NC_000913	1528479	1528479
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UN	491	.	NC_000913	1651278	1651278
UN	492	.	NC_000913	1971137	1971150
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UN	494	.	NC_000913	2067010	2067034
UN	495	.	NC_000913	2067036	2067038
UN	496	.	NC_000913	2069214	2069985
UN	497	.	NC_000913	2102025	2102025
UN	498	.	NC_000913	2102027	2102659
UN	499	.	NC_000913	2170449	2177386
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UN	501	.	NC_000913	2514536	2515368
UN	502	.	NC_000913	2515370	2515373
UN	503	.	NC_000913	2558699	2565488
UN	504	.	NC_000913	2726331	2726331
UN	505	.	NC_000913	2726333	2726333
UN	506	.	NC_000913	2726336	2728979
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UN	509	.	NC_000913	2996631	2997425
UN	510	.	NC_000913	3130426	3131089
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UN	512	.	NC_000913	3186351	3186351
UN	513	.	NC_000913	3186353	3186353
UN	514	.	NC_000913	3186355	3186355
UN	515	.	NC_000913	3186357	3187160
UN	516	.	NC_000913	3365828	3366470
UN	517	.	NC_000913	3423927	3423927
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UN	519	.	NC_000913	3424923	3424923
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UN	521	.	NC_000913	3424928	3426944
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UN	527	.	NC_000913	3427120	3427120
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UN	547	.	NC_000913	3621336	3622057
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UN	550	.	NC_000913	3762521	3763869
UN	551	.	NC_000913	3763878	3763878
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UN	553	.	NC_000913	3764297	3764297
UN	554	.	NC_000913	3764299	3764299
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UN	558	.	NC_000913	3764320	3765042
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UN	561	.	NC_000913	3942319	3943161
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UN	568	.	NC_000913	4039011	4039012
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UN	570	.	NC_000913	4039653	4039653
UN	571	.	NC_000913	4039655	4040326
UN	572	.	NC_000913	4040357	4040357
UN	573	.	NC_000913	4166573	4166581
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UN	575	.	NC_000913	4166914	4166914
UN	576	.	NC_000913	4166920	4166921
UN	577	.	NC_000913	4166923	4167974
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UN	579	.	NC_000913	4167984	4167984
UN	580	.	NC_000913	4167988	4167988
UN	581	.	NC_000913	4168809	4168809
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UN	583	.	NC_000913	4176835	4176835
UN	584	.	NC_000913	4176837	4176839
UN	585	.	NC_000913	4176841	4176842
UN	586	.	NC_000913	4208402	4209452
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UN	588	.	NC_000913	4209464	4209465
UN	589	.	NC_000913	4209470	4209471
UN	590	.	NC_000913	4210281	4210282
UN	591	.	NC_000913	4210284	4212850
UN	592	.	NC_000913	4498470	4499246
UN	593	.	NC_000913	4507754	4508426