#=GENOME_DIFF	1.0
#=CREATED	14:00:35 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8467_S10_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8467_S10_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8467_S10_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8467_S10_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8467_S10_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	401521959
#=CONVERTED-READS	1359757
#=INPUT-BASES	401613804
#=INPUT-READS	1360070
#=MAPPED-BASES	347890988
#=MAPPED-READS	1177241
SNP	1	172	NC_000913	246747	T
DEL	2	382,394	NC_000913	257908	776
SNP	3	173	NC_000913	407504	G
SNP	4	174	NC_000913	472849	G
SNP	5	175	NC_000913	495622	T
SNP	6	176	NC_000913	534742	A
SNP	7	177	NC_000913	547891	T
DEL	8	385,397	NC_000913	575786	3398	mediated=IS5
SNP	9	178	NC_000913	582597	T
SNP	10	179	NC_000913	690948	A
SNP	11	180	NC_000913	700038	A
SUB	12	184,185	NC_000913	809217	2	AG
SNP	13	187	NC_000913	1073610	A
SNP	14	188	NC_000913	1077657	T
SNP	15	190	NC_000913	1102774	T
SNP	16	191	NC_000913	1105847	A
SUB	17	193,194	NC_000913	1123823	2	AG
SNP	18	195	NC_000913	1147792	A
SNP	19	196	NC_000913	1158298	T
SNP	20	197	NC_000913	1169836	G
SNP	21	198	NC_000913	1176122	T
SNP	22	199	NC_000913	1189980	G
SNP	23	200	NC_000913	1194922	A
SNP	24	201	NC_000913	1196220	T
SNP	25	202	NC_000913	1196232	T
SNP	26	203	NC_000913	1196245	C
SNP	27	204	NC_000913	1196247	G
SNP	28	205	NC_000913	1196277	T
SNP	29	206	NC_000913	1196280	C
SNP	30	207	NC_000913	1196283	G
SNP	31	208	NC_000913	1196292	T
SNP	32	209	NC_000913	1196304	A
SNP	33	210	NC_000913	1196316	A
SNP	34	213	NC_000913	1222119	A
SNP	35	214	NC_000913	1222525	A
SNP	36	216	NC_000913	1247587	A
SNP	37	217	NC_000913	1253002	T
MOB	38	409,410	NC_000913	1293196	IS5	-1	4
INS	39	218	NC_000913	1301976	T
SNP	40	219	NC_000913	1301979	C
SNP	41	220	NC_000913	1301992	T
SNP	42	221	NC_000913	1306736	G
SNP	43	223	NC_000913	1337394	G
SNP	44	224	NC_000913	1357202	T
SNP	45	225	NC_000913	1358859	C
SNP	46	226	NC_000913	1380222	A
SNP	47	227	NC_000913	1381927	A
SNP	48	228	NC_000913	1405758	A
SNP	49	229	NC_000913	1407851	A
SNP	50	235	NC_000913	1489491	A
SUB	51	236,237,238,239	NC_000913	1497385	4	CAA
SNP	52	243	NC_000913	1609148	A
SNP	53	244	NC_000913	1629247	T
SNP	54	245	NC_000913	1643679	T
SNP	55	246	NC_000913	1652331	C
SNP	56	247	NC_000913	1667460	A
SNP	57	248	NC_000913	1748841	T
SNP	58	249	NC_000913	1751024	A
SNP	59	250	NC_000913	1764017	T
SNP	60	251	NC_000913	1797083	T
SUB	61	253,254	NC_000913	1848300	2	TT
MOB	62	417,418	NC_000913	1879829	IS186	1	6	del_end=1	del_start=1
SNP	63	255	NC_000913	1894839	C
SNP	64	256	NC_000913	1932745	T
SNP	65	257	NC_000913	1962172	T
DEL	66	258	NC_000913	1977215	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
SNP	67	259	NC_000913	1996093	A
SNP	68	260	NC_000913	1998749	T
SNP	69	261	NC_000913	2017589	C
SNP	70	262	NC_000913	2028651	A
SNP	71	263	NC_000913	2040433	A
SNP	72	264	NC_000913	2041278	A
SNP	73	265	NC_000913	2052885	A
MOB	74	419,421	NC_000913	2094553	IS1	1	9
SNP	75	266	NC_000913	2104024	T
DEL	76	267	NC_000913	2111259	1
SNP	77	268	NC_000913	2142598	A
DEL	78	389,432	NC_000913	2171429	5958	mediated=IS3
SNP	79	269	NC_000913	2233609	T
SNP	80	270	NC_000913	2242247	T
SNP	81	271	NC_000913	2247134	C
SNP	82	272	NC_000913	2281855	C
SNP	83	273	NC_000913	2281954	A
SNP	84	275	NC_000913	2353360	T
SNP	85	276	NC_000913	2404402	A
SNP	86	280	NC_000913	2531659	T
SNP	87	281	NC_000913	2534506	T
SNP	88	282	NC_000913	2556984	A
DEL	89	390,437	NC_000913	2558699	6790
SNP	90	283	NC_000913	2587112	T
SNP	91	284	NC_000913	2609473	A
SNP	92	285	NC_000913	2744217	T
SNP	93	286	NC_000913	2774947	A
SNP	94	289	NC_000913	2867455	A
SNP	95	290	NC_000913	2880635	C
SNP	96	291	NC_000913	2926772	A
SNP	97	292	NC_000913	2942306	A
SNP	98	293	NC_000913	3025598	A
SNP	99	296	NC_000913	3070858	G
SNP	100	297	NC_000913	3087508	T
SNP	101	298	NC_000913	3134479	T
SNP	102	299	NC_000913	3167148	A
DEL	103	301	NC_000913	3207549	1
SNP	104	302	NC_000913	3241106	G
SNP	105	303	NC_000913	3279276	G
SNP	106	304	NC_000913	3296481	A
SNP	107	305	NC_000913	3302338	A
SNP	108	306	NC_000913	3329743	T
SNP	109	307	NC_000913	3388041	G
SNP	110	308	NC_000913	3411689	T
SNP	111	309	NC_000913	3433900	T
SNP	112	310	NC_000913	3465502	A
SNP	113	311	NC_000913	3474424	G
SNP	114	312	NC_000913	3486502	T
SNP	115	313	NC_000913	3511466	T
SNP	116	314	NC_000913	3524913	T
SUB	117	315,316	NC_000913	3555047	2	TG
INS	118	317	NC_000913	3560455	G
SNP	119	318	NC_000913	3581222	G
SNP	120	319	NC_000913	3599487	T
SNP	121	320	NC_000913	3602471	T
SNP	122	321	NC_000913	3618809	T
SNP	123	328	NC_000913	3647428	T
SNP	124	329	NC_000913	3670329	T
SNP	125	330	NC_000913	3685480	T
SNP	126	331	NC_000913	3707947	A
SNP	127	332	NC_000913	3719378	A
SNP	128	333	NC_000913	3719429	A
SNP	129	334	NC_000913	3725176	G
SUB	130	335,336	NC_000913	3729440	2	TT
SNP	131	337	NC_000913	3730560	T
SNP	132	338	NC_000913	3737783	T
SNP	133	340	NC_000913	3763833	T
SNP	134	341	NC_000913	3770539	T
SNP	135	342	NC_000913	3772207	T
DEL	136	343	NC_000913	3773173	1
SNP	137	344	NC_000913	3773176	T
INS	138	345	NC_000913	3815883	C
SNP	139	348	NC_000913	3926991	A
SUB	140	349,350	NC_000913	3966530	2	TT
MOB	141	447,449	NC_000913	4044847	IS5	1	4
SNP	142	352	NC_000913	4081749	A
SNP	143	353	NC_000913	4095026	A
SNP	144	354	NC_000913	4096144	A
MOB	145	443,450	NC_000913	4124494	IS2	1	5
SNP	146	355	NC_000913	4133270	T
SNP	147	356	NC_000913	4138436	T
SNP	148	357	NC_000913	4145137	T
SNP	149	358	NC_000913	4166554	T
SNP	150	359	NC_000913	4223638	C
SNP	151	361	NC_000913	4256705	T
SNP	152	362	NC_000913	4259570	A
INS	153	364,365	NC_000913	4296381	GC
SNP	154	366	NC_000913	4307944	T
SNP	155	367	NC_000913	4322288	G
SNP	156	368	NC_000913	4325000	T
SNP	157	369	NC_000913	4325644	T
SNP	158	370	NC_000913	4331890	T
SNP	159	372	NC_000913	4437890	T
MOB	160	431,433	NC_000913	4440465	IS3	-1	3
SNP	161	373	NC_000913	4473900	T
SNP	162	374	NC_000913	4475493	C
SNP	163	375	NC_000913	4476605	A
SNP	164	376	NC_000913	4489016	T
SNP	165	377	NC_000913	4510238	G
SNP	166	378	NC_000913	4532409	G
SNP	167	379	NC_000913	4546601	T
SNP	168	380	NC_000913	4636925	C
SNP	169	381	NC_000913	4638240	A
MOB	170	453,454	NC_000913	4640418	IS30	-1	2
RA	171	.	NC_000913	85651	0	G	T	bias_e_value=566.059	bias_p_value=0.000121952	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.0	fisher_strand_p_value=9.72437e-06	frequency=3.085e-01	ks_quality_p_value=1	major_base=G	major_cov=27/38	major_frequency=6.915e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.085e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=27/38	total_cov=27/67
RA	172	.	NC_000913	246747	0	G	T	consensus_score=215.1	frequency=1	major_base=T	major_cov=27/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/33
RA	173	.	NC_000913	407504	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=341.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/48	major_frequency=9.892e-01	minor_base=T	minor_cov=0/1	new_cov=44/48	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/49
RA	174	.	NC_000913	472849	0	A	G	consensus_score=319.0	frequency=1	major_base=G	major_cov=41/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	175	.	NC_000913	495622	0	C	T	consensus_score=323.3	frequency=1	major_base=T	major_cov=54/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/34
RA	176	.	NC_000913	534742	0	G	A	consensus_score=249.0	frequency=1	major_base=A	major_cov=47/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/23
RA	177	.	NC_000913	547891	0	C	T	consensus_score=172.1	frequency=1	major_base=T	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	178	.	NC_000913	582597	0	C	T	bias_e_value=2172410	bias_p_value=0.468026	consensus_score=383.7	fisher_strand_p_value=0.168196	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=64/43	major_frequency=9.817e-01	minor_base=C	minor_cov=0/2	new_cov=64/43	polymorphism_frequency=9.817e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/2	total_cov=64/45
RA	179	.	NC_000913	690948	0	G	A	bias_e_value=3850220	bias_p_value=0.829494	consensus_score=214.5	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/33	major_frequency=9.841e-01	minor_base=C	minor_cov=1/0	new_cov=29/33	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	180	.	NC_000913	700038	0	G	A	consensus_score=200.6	frequency=1	major_base=A	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	181	.	NC_000913	731374	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=25.3	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=6/5	major_frequency=9.167e-01	minor_base=C	minor_cov=1/0	new_cov=6/5	polymorphism_frequency=9.167e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	182	.	NC_000913	731375	0	C	T	consensus_score=26.0	deleted=1	frequency=1	major_base=T	major_cov=7/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	183	.	NC_000913	731392	0	A	G	consensus_score=22.6	deleted=1	frequency=1	major_base=G	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	184	.	NC_000913	809217	0	C	A	bias_e_value=4641320	bias_p_value=0.999928	consensus_score=188.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988006	major_base=A	major_cov=29/22	major_frequency=9.808e-01	minor_base=.	minor_cov=1/0	new_cov=29/22	polymorphism_frequency=9.808e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=0/0	total_cov=30/22
RA	185	.	NC_000913	809218	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=180.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=29/20	major_frequency=9.608e-01	minor_base=A	minor_cov=1/1	new_cov=29/20	polymorphism_frequency=9.608e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=1/1	total_cov=30/22
RA	186	.	NC_000913	847955	0	G	A	bias_e_value=0.0175123	bias_p_value=3.77286e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.9	fisher_strand_p_value=1.60174e-10	frequency=2.667e-01	ks_quality_p_value=1	major_base=G	major_cov=50/27	major_frequency=7.333e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.667e-01	polymorphism_score=32.6	prediction=polymorphism	ref_cov=50/27	total_cov=50/55
RA	187	.	NC_000913	1073610	0	G	A	bias_e_value=3852740	bias_p_value=0.830037	consensus_score=207.9	fisher_strand_p_value=0.476923	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/34	major_frequency=9.846e-01	minor_base=G	minor_cov=1/0	new_cov=30/34	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/34
RA	188	.	NC_000913	1077657	0	C	T	consensus_score=230.8	frequency=1	major_base=T	major_cov=29/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/36
RA	189	.	NC_000913	1097118	0	C	A	bias_e_value=2951480	bias_p_value=0.635869	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.7	fisher_strand_p_value=0.280058	frequency=3.529e-01	ks_quality_p_value=0.998219	major_base=C	major_cov=2/9	major_frequency=6.471e-01	minor_base=A	minor_cov=3/3	new_cov=3/3	polymorphism_frequency=3.529e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=2/9	total_cov=5/12
RA	190	.	NC_000913	1102774	0	C	T	consensus_score=251.6	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	191	.	NC_000913	1105847	0	G	A	consensus_score=213.9	frequency=1	major_base=A	major_cov=35/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/28
RA	192	.	NC_000913	1109632	0	G	A	bias_e_value=0.283399	bias_p_value=6.10555e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.6	fisher_strand_p_value=2.95831e-09	frequency=2.292e-01	ks_quality_p_value=1	major_base=G	major_cov=50/24	major_frequency=7.708e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.292e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=50/24	total_cov=50/47
RA	193	.	NC_000913	1123823	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=239.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/34	major_frequency=9.859e-01	minor_base=C	minor_cov=1/0	new_cov=36/34	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	194	.	NC_000913	1123824	0	T	G	bias_e_value=3859430	bias_p_value=0.831477	consensus_score=256.1	fisher_strand_p_value=0.478873	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/33	major_frequency=9.859e-01	minor_base=A	minor_cov=0/1	new_cov=37/33	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	195	.	NC_000913	1147792	0	T	A	consensus_score=182.5	frequency=1	major_base=A	major_cov=20/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/31
RA	196	.	NC_000913	1158298	0	C	T	consensus_score=258.1	frequency=1	major_base=T	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	197	.	NC_000913	1169836	0	A	G	consensus_score=186.6	frequency=1	major_base=G	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	198	.	NC_000913	1176122	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=160.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/29	major_frequency=9.796e-01	minor_base=.	minor_cov=0/1	new_cov=19/29	polymorphism_frequency=9.796e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/0	total_cov=19/30
RA	199	.	NC_000913	1189980	0	A	G	consensus_score=224.2	frequency=1	major_base=G	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	200	.	NC_000913	1194922	0	G	A	consensus_score=187.8	frequency=1	major_base=A	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	201	.	NC_000913	1196220	0	C	T	consensus_score=130.4	frequency=1	major_base=T	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	202	.	NC_000913	1196232	0	C	T	consensus_score=120.5	frequency=1	major_base=T	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	203	.	NC_000913	1196245	0	T	C	consensus_score=119.8	frequency=1	major_base=C	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	204	.	NC_000913	1196247	0	A	G	bias_e_value=4641310	bias_p_value=0.999927	consensus_score=115.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.987928	major_base=G	major_cov=18/20	major_frequency=9.744e-01	minor_base=T	minor_cov=0/1	new_cov=18/20	polymorphism_frequency=9.744e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	205	.	NC_000913	1196277	0	C	T	consensus_score=77.5	frequency=1	major_base=T	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	206	.	NC_000913	1196280	0	G	C	bias_e_value=3872630	bias_p_value=0.834322	consensus_score=77.4	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=13/15	major_frequency=9.655e-01	minor_base=A	minor_cov=1/0	new_cov=13/15	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	207	.	NC_000913	1196283	0	A	G	consensus_score=80.3	frequency=1	major_base=G	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	208	.	NC_000913	1196292	0	C	T	consensus_score=71.0	frequency=1	major_base=T	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	209	.	NC_000913	1196304	0	G	A	consensus_score=60.3	frequency=1	major_base=A	major_cov=12/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/12
RA	210	.	NC_000913	1196316	0	T	A	consensus_score=50.2	frequency=1	major_base=A	major_cov=11/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/11
RA	211	.	NC_000913	1196325	0	A	G	consensus_score=33.9	deleted=1	frequency=1	major_base=G	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	212	.	NC_000913	1196352	0	C	A	consensus_score=17.0	deleted=1	frequency=1	major_base=A	major_cov=7/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/3
RA	213	.	NC_000913	1222119	0	G	A	consensus_score=337.1	frequency=1	major_base=A	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	214	.	NC_000913	1222525	0	G	A	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=259.8	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/44	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=32/44	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/44
RA	215	.	NC_000913	1224076	0	C	A	bias_e_value=3238890	bias_p_value=0.697789	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.8	fisher_strand_p_value=0.39191	frequency=2.500e-01	ks_quality_p_value=0.846482	major_base=C	major_cov=23/25	major_frequency=7.500e-01	minor_base=A	minor_cov=10/6	new_cov=10/6	polymorphism_frequency=2.500e-01	polymorphism_score=36.6	prediction=polymorphism	ref_cov=23/25	total_cov=33/31
RA	216	.	NC_000913	1247587	0	G	A	consensus_score=291.5	frequency=1	major_base=A	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	217	.	NC_000913	1253002	0	C	T	consensus_score=201.9	frequency=1	major_base=T	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	218	.	NC_000913	1301976	1	.	T	consensus_score=228.8	frequency=1	major_base=T	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	219	.	NC_000913	1301979	0	A	C	consensus_score=262.6	frequency=1	major_base=C	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	220	.	NC_000913	1301992	0	A	T	consensus_score=230.8	frequency=1	major_base=T	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	221	.	NC_000913	1306736	0	T	G	consensus_score=273.7	frequency=1	major_base=G	major_cov=51/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/21
RA	222	.	NC_000913	1334966	0	A	C	bias_e_value=51.504	bias_p_value=1.1096e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.7	fisher_strand_p_value=7.33609e-07	frequency=2.453e-01	ks_quality_p_value=1	major_base=A	major_cov=40/40	major_frequency=7.547e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.453e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=40/40	total_cov=66/40
RA	223	.	NC_000913	1337394	0	A	G	bias_e_value=1957300	bias_p_value=0.421682	consensus_score=184.7	fisher_strand_p_value=0.143288	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=32/18	major_frequency=9.615e-01	minor_base=T	minor_cov=0/2	new_cov=32/18	polymorphism_frequency=9.615e-01	polymorphism_score=-6.8	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	224	.	NC_000913	1357202	0	C	T	consensus_score=229.0	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	225	.	NC_000913	1358859	0	T	C	bias_e_value=3639810	bias_p_value=0.784164	consensus_score=212.8	fisher_strand_p_value=0.423729	frequency=1	ks_quality_p_value=0.990692	major_base=C	major_cov=34/24	major_frequency=9.831e-01	minor_base=T	minor_cov=0/1	new_cov=34/24	polymorphism_frequency=9.831e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=34/25
RA	226	.	NC_000913	1380222	0	G	A	consensus_score=240.1	frequency=1	major_base=A	major_cov=31/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	227	.	NC_000913	1381927	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=259.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/42	major_frequency=9.730e-01	minor_base=G	minor_cov=1/1	new_cov=30/42	polymorphism_frequency=9.730e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/1	total_cov=31/43
RA	228	.	NC_000913	1405758	0	G	A	consensus_score=282.9	frequency=1	major_base=A	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	229	.	NC_000913	1407851	0	G	A	consensus_score=287.2	frequency=1	major_base=A	major_cov=50/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/35
RA	230	.	NC_000913	1427992	0	G	T	bias_e_value=0.00519895	bias_p_value=1.12006e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.5	fisher_strand_p_value=4.51246e-11	frequency=3.223e-01	ks_quality_p_value=1	major_base=G	major_cov=46/36	major_frequency=6.777e-01	minor_base=T	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=3.223e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=46/36	total_cov=46/75
RA	231	.	NC_000913	1466201	0	T	C	bias_e_value=2805940	bias_p_value=0.604513	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.6	fisher_strand_p_value=0.255775	frequency=2.037e-01	ks_quality_p_value=1	major_base=T	major_cov=10/33	major_frequency=7.963e-01	minor_base=C	minor_cov=5/6	new_cov=5/6	polymorphism_frequency=2.037e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=10/33	total_cov=15/39
RA	232	.	NC_000913	1466210	0	G	A	bias_e_value=1005640	bias_p_value=0.216655	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.2	fisher_strand_p_value=0.0557367	frequency=2.075e-01	ks_quality_p_value=1	major_base=G	major_cov=9/33	major_frequency=7.925e-01	minor_base=A	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.075e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=9/33	total_cov=15/38
RA	233	.	NC_000913	1466562	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.0	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=21/12	major_frequency=7.500e-01	minor_base=A	minor_cov=7/4	new_cov=7/4	polymorphism_frequency=2.500e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=21/12	total_cov=28/16
RA	234	.	NC_000913	1480719	0	G	T	bias_e_value=105.711	bias_p_value=2.27744e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.8	fisher_strand_p_value=1.58664e-06	frequency=2.703e-01	ks_quality_p_value=1	major_base=G	major_cov=32/22	major_frequency=7.297e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.703e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=32/22	total_cov=32/42
RA	235	.	NC_000913	1489491	0	G	A	consensus_score=264.8	frequency=1	major_base=A	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	236	.	NC_000913	1497385	0	T	C	consensus_score=217.9	frequency=1	major_base=C	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	237	.	NC_000913	1497386	0	T	.	consensus_score=275.0	frequency=1	major_base=.	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	238	.	NC_000913	1497387	0	C	A	consensus_score=211.8	frequency=1	major_base=A	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	239	.	NC_000913	1497388	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=206.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/33	major_frequency=9.828e-01	minor_base=G	minor_cov=0/1	new_cov=24/33	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	240	.	NC_000913	1502768	0	G	A	bias_e_value=17981.1	bias_p_value=0.00387386	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.2	fisher_strand_p_value=0.000444301	frequency=2.029e-01	ks_quality_p_value=1	major_base=G	major_cov=27/28	major_frequency=7.971e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.029e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=27/28	total_cov=27/42
RA	241	.	NC_000913	1502770	0	T	C	bias_e_value=63.4562	bias_p_value=1.3671e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.8	fisher_strand_p_value=9.17414e-07	frequency=3.188e-01	ks_quality_p_value=1	major_base=T	major_cov=27/20	major_frequency=6.812e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.188e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=27/20	total_cov=27/42
RA	242	.	NC_000913	1502772	0	G	A	bias_e_value=47.3883	bias_p_value=1.02094e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.1	fisher_strand_p_value=6.7103e-07	frequency=3.235e-01	ks_quality_p_value=1	major_base=G	major_cov=27/19	major_frequency=6.765e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.235e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=27/19	total_cov=27/42
RA	243	.	NC_000913	1609148	0	G	A	consensus_score=226.2	frequency=1	major_base=A	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	244	.	NC_000913	1629247	0	C	T	consensus_score=178.6	frequency=1	major_base=T	major_cov=23/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/28
RA	245	.	NC_000913	1643679	0	A	T	consensus_score=183.1	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	246	.	NC_000913	1652331	0	T	C	consensus_score=292.7	frequency=1	major_base=C	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	247	.	NC_000913	1667460	0	G	A	bias_e_value=3910990	bias_p_value=0.842585	consensus_score=242.4	fisher_strand_p_value=0.494293	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/32	major_frequency=9.706e-01	minor_base=C	minor_cov=2/0	new_cov=34/32	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	248	.	NC_000913	1748841	0	C	T	consensus_score=164.9	frequency=1	major_base=T	major_cov=22/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	249	.	NC_000913	1751024	0	C	A	bias_e_value=2796190	bias_p_value=0.602412	consensus_score=212.6	fisher_strand_p_value=0.254237	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/44	major_frequency=9.831e-01	minor_base=C	minor_cov=1/0	new_cov=14/44	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=15/44
RA	250	.	NC_000913	1764017	0	C	T	consensus_score=217.5	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	251	.	NC_000913	1797083	0	C	T	consensus_score=211.4	frequency=1	major_base=T	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	252	.	NC_000913	1803714	0	C	A	bias_e_value=23.4357	bias_p_value=5.04901e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.4	fisher_strand_p_value=3.16219e-07	frequency=2.184e-01	ks_quality_p_value=1	major_base=C	major_cov=25/43	major_frequency=7.816e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.184e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=25/43	total_cov=44/43
RA	253	.	NC_000913	1848300	0	C	T	consensus_score=178.5	frequency=1	major_base=T	major_cov=27/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	254	.	NC_000913	1848301	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=178.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/28	major_frequency=9.821e-01	minor_base=C	minor_cov=0/1	new_cov=27/28	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=27/29
RA	255	.	NC_000913	1894839	0	T	C	consensus_score=261.4	frequency=1	major_base=C	major_cov=42/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/27
RA	256	.	NC_000913	1932745	0	C	T	consensus_score=147.9	frequency=1	major_base=T	major_cov=21/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	257	.	NC_000913	1962172	0	C	T	consensus_score=347.4	frequency=1	major_base=T	major_cov=47/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/56
RA	258	.	NC_000913	1977215	0	A	.	bias_e_value=3925460	bias_p_value=0.845703	consensus_score=249.7	fisher_strand_p_value=0.498747	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=30/25	major_frequency=9.649e-01	minor_base=A	minor_cov=2/0	new_cov=30/25	polymorphism_frequency=9.649e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=2/0	total_cov=32/25
RA	259	.	NC_000913	1996093	0	G	A	consensus_score=306.9	frequency=1	major_base=A	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	260	.	NC_000913	1998749	0	C	T	consensus_score=235.8	frequency=1	major_base=T	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	261	.	NC_000913	2017589	0	A	C	bias_e_value=3805110	bias_p_value=0.819775	consensus_score=184.9	fisher_strand_p_value=0.480769	frequency=1	ks_quality_p_value=0.963721	major_base=C	major_cov=27/24	major_frequency=9.808e-01	minor_base=A	minor_cov=0/1	new_cov=27/24	polymorphism_frequency=9.808e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=27/25
RA	262	.	NC_000913	2028651	0	G	A	consensus_score=240.1	frequency=1	major_base=A	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	263	.	NC_000913	2040433	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=223.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/33	major_frequency=9.853e-01	minor_base=C	minor_cov=1/0	new_cov=34/33	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/33
RA	264	.	NC_000913	2041278	0	G	A	consensus_score=338.2	frequency=1	major_base=A	major_cov=49/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/42
RA	265	.	NC_000913	2052885	0	G	A	consensus_score=323.5	frequency=1	major_base=A	major_cov=54/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/41
RA	266	.	NC_000913	2104024	0	G	T	consensus_score=390.0	frequency=1	major_base=T	major_cov=53/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/54
RA	267	.	NC_000913	2111259	0	G	.	consensus_score=357.4	frequency=1	major_base=.	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	268	.	NC_000913	2142598	0	G	A	consensus_score=306.5	frequency=1	major_base=A	major_cov=31/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/57
RA	269	.	NC_000913	2233609	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=339.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/36	major_frequency=9.894e-01	minor_base=G	minor_cov=1/0	new_cov=57/36	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=59/36
RA	270	.	NC_000913	2242247	0	C	T	consensus_score=188.8	frequency=1	major_base=T	major_cov=22/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/35
RA	271	.	NC_000913	2247134	0	A	C	bias_e_value=3689650	bias_p_value=0.7949	consensus_score=394.2	fisher_strand_p_value=0.432692	frequency=1	ks_quality_p_value=0.999253	major_base=C	major_cov=44/59	major_frequency=9.904e-01	minor_base=A	minor_cov=1/0	new_cov=44/59	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/59
RA	272	.	NC_000913	2281855	0	T	C	consensus_score=295.5	frequency=1	major_base=C	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	273	.	NC_000913	2281954	0	C	A	consensus_score=319.1	frequency=1	major_base=A	major_cov=33/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/56
RA	274	.	NC_000913	2288418	0	G	T	bias_e_value=0.00508511	bias_p_value=1.09554e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.2	fisher_strand_p_value=4.40956e-11	frequency=2.288e-01	ks_quality_p_value=1	major_base=G	major_cov=61/30	major_frequency=7.712e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.288e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=61/30	total_cov=62/57
RA	275	.	NC_000913	2353360	0	C	T	consensus_score=161.0	frequency=1	major_base=T	major_cov=26/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/19
RA	276	.	NC_000913	2404402	0	G	A	consensus_score=280.8	frequency=1	major_base=A	major_cov=50/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/29
RA	277	.	NC_000913	2466633	0	C	A	bias_e_value=1317.3	bias_p_value=0.000283799	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.5	fisher_strand_p_value=2.44234e-05	frequency=2.277e-01	ks_quality_p_value=1	major_base=C	major_cov=44/34	major_frequency=7.723e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.277e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=44/34	total_cov=67/34
RA	278	.	NC_000913	2477265	0	A	C	bias_e_value=317.152	bias_p_value=6.83274e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.2	fisher_strand_p_value=5.18848e-06	frequency=2.787e-01	ks_quality_p_value=1	major_base=A	major_cov=17/27	major_frequency=7.213e-01	minor_base=C	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.787e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=17/27	total_cov=34/27
RA	279	.	NC_000913	2490240	0	G	T	bias_e_value=2565.51	bias_p_value=0.000552715	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.5	fisher_strand_p_value=5.0762e-05	frequency=2.609e-01	ks_quality_p_value=1	major_base=G	major_cov=33/35	major_frequency=7.391e-01	minor_base=T	minor_cov=1/23	new_cov=1/23	polymorphism_frequency=2.609e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=33/35	total_cov=34/58
RA	280	.	NC_000913	2531659	0	C	T	consensus_score=245.4	frequency=1	major_base=T	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	281	.	NC_000913	2534506	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=240.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/32	major_frequency=9.851e-01	minor_base=C	minor_cov=1/0	new_cov=34/32	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/33
RA	282	.	NC_000913	2556984	0	G	A	bias_e_value=3872630	bias_p_value=0.834322	consensus_score=301.4	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/45	major_frequency=9.885e-01	minor_base=C	minor_cov=1/0	new_cov=41/45	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	283	.	NC_000913	2587112	0	C	T	bias_e_value=3687990	bias_p_value=0.794543	consensus_score=249.4	fisher_strand_p_value=0.447368	frequency=1	ks_quality_p_value=0.965521	major_base=T	major_cov=42/33	major_frequency=9.868e-01	minor_base=C	minor_cov=0/1	new_cov=42/33	polymorphism_frequency=9.868e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=42/34
RA	284	.	NC_000913	2609473	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=349.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=64/38	major_frequency=9.903e-01	minor_base=C	minor_cov=1/0	new_cov=64/38	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/38
RA	285	.	NC_000913	2744217	0	C	T	consensus_score=172.3	frequency=1	major_base=T	major_cov=19/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/36
RA	286	.	NC_000913	2774947	0	G	A	consensus_score=480.3	frequency=1	major_base=A	major_cov=70/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/67
RA	287	.	NC_000913	2818324	0	G	A	bias_e_value=4260370	bias_p_value=0.917856	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.6	fisher_strand_p_value=0.717095	frequency=2.250e-01	ks_quality_p_value=0.868922	major_base=G	major_cov=13/18	major_frequency=7.750e-01	minor_base=A	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.250e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=13/18	total_cov=16/24
RA	288	.	NC_000913	2818433	0	C	T	bias_e_value=3910070	bias_p_value=0.842387	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.0	fisher_strand_p_value=0.494012	frequency=2.000e-01	ks_quality_p_value=1	major_base=C	major_cov=25/15	major_frequency=8.000e-01	minor_base=T	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.000e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=25/15	total_cov=30/20
RA	289	.	NC_000913	2867455	0	G	A	consensus_score=354.2	frequency=1	major_base=A	major_cov=59/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/41
RA	290	.	NC_000913	2880635	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=313.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=45/39	major_frequency=9.882e-01	minor_base=A	minor_cov=1/0	new_cov=45/39	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	291	.	NC_000913	2926772	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=267.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=39/37	major_frequency=9.870e-01	minor_base=G	minor_cov=1/0	new_cov=39/37	polymorphism_frequency=9.870e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	292	.	NC_000913	2942306	0	G	A	consensus_score=324.2	frequency=1	major_base=A	major_cov=55/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/38
RA	293	.	NC_000913	3025598	0	T	A	consensus_score=369.9	frequency=1	major_base=A	major_cov=57/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/48
RA	294	.	NC_000913	3032307	0	C	T	bias_e_value=3.67178	bias_p_value=7.91049e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.6	fisher_strand_p_value=4.41021e-08	frequency=2.088e-01	ks_quality_p_value=1	major_base=C	major_cov=24/48	major_frequency=7.912e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.088e-01	polymorphism_score=22.4	prediction=polymorphism	ref_cov=24/48	total_cov=43/48
RA	295	.	NC_000913	3054886	0	G	T	bias_e_value=69.5506	bias_p_value=1.4984e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.7	fisher_strand_p_value=1.0122e-06	frequency=2.985e-01	ks_quality_p_value=1	major_base=G	major_cov=18/29	major_frequency=7.015e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.985e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=18/29	total_cov=38/29
RA	296	.	NC_000913	3070858	0	T	G	consensus_score=305.1	frequency=1	major_base=G	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	297	.	NC_000913	3087508	0	C	T	consensus_score=186.8	frequency=1	major_base=T	major_cov=23/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/36
RA	298	.	NC_000913	3134479	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=315.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/49	major_frequency=9.888e-01	minor_base=G	minor_cov=0/1	new_cov=39/49	polymorphism_frequency=9.888e-01	polymorphism_score=-6.8	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	299	.	NC_000913	3167148	0	G	A	consensus_score=280.1	frequency=1	major_base=A	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	300	.	NC_000913	3181552	0	C	A	bias_e_value=141.181	bias_p_value=3.04162e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.3	fisher_strand_p_value=2.16599e-06	frequency=2.135e-01	ks_quality_p_value=1	major_base=C	major_cov=30/40	major_frequency=7.865e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.135e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=30/40	total_cov=49/40
RA	301	.	NC_000913	3207549	0	G	.	bias_e_value=3766120	bias_p_value=0.811375	consensus_score=417.9	fisher_strand_p_value=0.483146	frequency=1	ks_quality_p_value=0.936718	major_base=.	major_cov=42/46	major_frequency=9.888e-01	minor_base=G	minor_cov=1/0	new_cov=42/46	polymorphism_frequency=9.888e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/0	total_cov=43/46
RA	302	.	NC_000913	3241106	0	A	G	consensus_score=228.5	frequency=1	major_base=G	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	303	.	NC_000913	3279276	0	C	G	bias_e_value=2471100	bias_p_value=0.532374	consensus_score=311.0	fisher_strand_p_value=0.206582	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=45/36	major_frequency=9.759e-01	minor_base=T	minor_cov=0/2	new_cov=45/36	polymorphism_frequency=9.759e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	304	.	NC_000913	3296481	0	G	A	consensus_score=198.3	frequency=1	major_base=A	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	305	.	NC_000913	3302338	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=308.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=38/47	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=38/47	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	306	.	NC_000913	3329743	0	G	T	consensus_score=220.9	frequency=1	major_base=T	major_cov=40/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/22
RA	307	.	NC_000913	3388041	0	T	G	consensus_score=240.5	frequency=1	major_base=G	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	308	.	NC_000913	3411689	0	G	T	consensus_score=343.7	frequency=1	major_base=T	major_cov=59/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/35
RA	309	.	NC_000913	3433900	0	C	T	consensus_score=332.3	frequency=1	major_base=T	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	310	.	NC_000913	3465502	0	G	A	consensus_score=292.7	frequency=1	major_base=A	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	311	.	NC_000913	3474424	0	T	G	consensus_score=255.3	frequency=1	major_base=G	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	312	.	NC_000913	3486502	0	C	T	consensus_score=211.5	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	313	.	NC_000913	3511466	0	C	T	consensus_score=218.5	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	314	.	NC_000913	3524913	0	C	T	bias_e_value=3872630	bias_p_value=0.834322	consensus_score=188.2	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/27	major_frequency=9.828e-01	minor_base=G	minor_cov=0/1	new_cov=30/27	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/28
RA	315	.	NC_000913	3555047	0	G	T	consensus_score=263.8	frequency=1	major_base=T	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	316	.	NC_000913	3555048	0	T	G	consensus_score=272.0	frequency=1	major_base=G	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	317	.	NC_000913	3560455	1	.	G	consensus_score=377.5	frequency=1	major_base=G	major_cov=55/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/47
RA	318	.	NC_000913	3581222	0	A	G	consensus_score=323.5	frequency=1	major_base=G	major_cov=37/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/49
RA	319	.	NC_000913	3599487	0	C	T	consensus_score=228.1	frequency=1	major_base=T	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	320	.	NC_000913	3602471	0	C	T	consensus_score=230.1	frequency=1	major_base=T	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	321	.	NC_000913	3618809	0	C	T	consensus_score=260.6	frequency=1	major_base=T	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	322	.	NC_000913	3620844	0	T	C	bias_e_value=3666400	bias_p_value=0.789892	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.7	fisher_strand_p_value=1	frequency=2.727e-01	ks_quality_p_value=0.426445	major_base=T	major_cov=10/6	major_frequency=7.273e-01	minor_base=C	minor_cov=4/2	new_cov=4/2	polymorphism_frequency=2.727e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=10/6	total_cov=14/8
RA	323	.	NC_000913	3620859	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.9	fisher_strand_p_value=1	frequency=2.593e-01	ks_quality_p_value=1	major_base=C	major_cov=11/9	major_frequency=7.407e-01	minor_base=T	minor_cov=4/3	new_cov=4/3	polymorphism_frequency=2.593e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=11/9	total_cov=15/12
RA	324	.	NC_000913	3620862	0	C	T	bias_e_value=2958380	bias_p_value=0.637356	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.5	fisher_strand_p_value=1	frequency=2.593e-01	ks_quality_p_value=0.280728	major_base=C	major_cov=11/9	major_frequency=7.407e-01	minor_base=T	minor_cov=4/3	new_cov=4/3	polymorphism_frequency=2.593e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=11/9	total_cov=15/12
RA	325	.	NC_000913	3620865	0	G	T	bias_e_value=4640120	bias_p_value=0.99967	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.4	fisher_strand_p_value=1	frequency=2.593e-01	ks_quality_p_value=0.974407	major_base=G	major_cov=11/9	major_frequency=7.407e-01	minor_base=T	minor_cov=4/3	new_cov=4/3	polymorphism_frequency=2.593e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=11/9	total_cov=15/12
RA	326	.	NC_000913	3620869	0	A	G	bias_e_value=4330020	bias_p_value=0.932863	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.7	fisher_strand_p_value=0.656705	frequency=2.000e-01	ks_quality_p_value=1	major_base=A	major_cov=12/12	major_frequency=8.000e-01	minor_base=G	minor_cov=4/2	new_cov=4/2	polymorphism_frequency=2.000e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=12/12	total_cov=16/15
RA	327	.	NC_000913	3623538	0	G	A	bias_e_value=0.0861679	bias_p_value=1.85641e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.9	fisher_strand_p_value=8.48139e-10	frequency=2.137e-01	ks_quality_p_value=1	major_base=G	major_cov=59/33	major_frequency=7.863e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.137e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=59/33	total_cov=59/74
RA	328	.	NC_000913	3647428	0	C	T	consensus_score=277.0	frequency=1	major_base=T	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	329	.	NC_000913	3670329	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=263.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999649	major_base=T	major_cov=37/38	major_frequency=9.868e-01	minor_base=G	minor_cov=0/1	new_cov=37/38	polymorphism_frequency=9.868e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=37/39
RA	330	.	NC_000913	3685480	0	C	T	consensus_score=379.1	frequency=1	major_base=T	major_cov=52/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/49
RA	331	.	NC_000913	3707947	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=304.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=63/28	major_frequency=9.891e-01	minor_base=C	minor_cov=1/0	new_cov=63/28	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=64/28
RA	332	.	NC_000913	3719378	0	G	A	consensus_score=358.0	frequency=1	major_base=A	major_cov=38/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/61
RA	333	.	NC_000913	3719429	0	G	A	consensus_score=312.1	frequency=1	major_base=A	major_cov=39/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/49
RA	334	.	NC_000913	3725176	0	T	G	consensus_score=278.6	frequency=1	major_base=G	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	335	.	NC_000913	3729440	0	C	T	consensus_score=171.5	frequency=1	major_base=T	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	336	.	NC_000913	3729441	0	C	T	consensus_score=183.5	frequency=1	major_base=T	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	337	.	NC_000913	3730560	0	C	T	consensus_score=267.3	frequency=1	major_base=T	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	338	.	NC_000913	3737783	0	C	T	consensus_score=213.5	frequency=1	major_base=T	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	339	.	NC_000913	3741871	0	G	T	bias_e_value=0.0938765	bias_p_value=2.02248e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.7	fisher_strand_p_value=9.2782e-10	frequency=2.871e-01	ks_quality_p_value=1	major_base=G	major_cov=44/28	major_frequency=7.129e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.871e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=44/28	total_cov=44/57
RA	340	.	NC_000913	3763833	0	C	T	consensus_score=17.2	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	341	.	NC_000913	3770539	0	C	T	consensus_score=282.4	frequency=1	major_base=T	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	342	.	NC_000913	3772207	0	C	T	consensus_score=377.3	frequency=1	major_base=T	major_cov=61/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/49
RA	343	.	NC_000913	3773173	0	G	.	consensus_score=346.8	frequency=1	major_base=.	major_cov=48/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/24
RA	344	.	NC_000913	3773176	0	C	T	consensus_score=270.6	frequency=1	major_base=T	major_cov=50/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/25
RA	345	.	NC_000913	3815883	1	.	C	bias_e_value=4230020	bias_p_value=0.911317	consensus_score=272.8	fisher_strand_p_value=0.609589	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=34/37	major_frequency=9.595e-01	minor_base=.	minor_cov=2/1	new_cov=34/37	polymorphism_frequency=9.595e-01	polymorphism_score=4.1	prediction=consensus	ref_cov=2/1	total_cov=38/38
RA	346	.	NC_000913	3911533	0	C	A	bias_e_value=1.13301e-05	bias_p_value=2.44097e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.7	fisher_strand_p_value=7.82905e-14	frequency=4.434e-01	ks_quality_p_value=1	major_base=C	major_cov=21/38	major_frequency=5.566e-01	minor_base=A	minor_cov=47/0	new_cov=47/0	polymorphism_frequency=4.434e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=21/38	total_cov=68/38
RA	347	.	NC_000913	3926595	0	C	A	bias_e_value=2.38905	bias_p_value=5.14699e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.8	fisher_strand_p_value=2.79856e-08	frequency=2.771e-01	ks_quality_p_value=1	major_base=C	major_cov=22/38	major_frequency=7.229e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.771e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=22/38	total_cov=45/38
RA	348	.	NC_000913	3926991	0	G	A	consensus_score=385.6	frequency=1	major_base=A	major_cov=65/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/51
RA	349	.	NC_000913	3966530	0	C	T	consensus_score=318.6	frequency=1	major_base=T	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	350	.	NC_000913	3966531	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=313.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/45	major_frequency=9.888e-01	minor_base=G	minor_cov=0/1	new_cov=43/45	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	351	.	NC_000913	4037496	0	A	T	bias_e_value=1337230	bias_p_value=0.288095	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.4	fisher_strand_p_value=0.0824041	frequency=4.552e-01	ks_quality_p_value=1	major_base=A	major_cov=31/42	major_frequency=5.448e-01	minor_base=T	minor_cov=36/25	new_cov=36/25	polymorphism_frequency=4.552e-01	polymorphism_score=253.0	prediction=polymorphism	ref_cov=31/42	total_cov=67/68
RA	352	.	NC_000913	4081749	0	G	A	consensus_score=286.7	frequency=1	major_base=A	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	353	.	NC_000913	4095026	0	G	A	consensus_score=194.5	frequency=1	major_base=A	major_cov=21/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/32
RA	354	.	NC_000913	4096144	0	G	A	consensus_score=320.9	frequency=1	major_base=A	major_cov=54/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/36
RA	355	.	NC_000913	4133270	0	C	T	bias_e_value=1719790	bias_p_value=0.370513	consensus_score=337.2	fisher_strand_p_value=0.118159	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/50	major_frequency=9.623e-01	minor_base=G	minor_cov=0/4	new_cov=52/50	polymorphism_frequency=9.623e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/0	total_cov=52/54
RA	356	.	NC_000913	4138436	0	C	T	bias_e_value=3311260	bias_p_value=0.713379	consensus_score=179.2	fisher_strand_p_value=0.346154	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/17	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=34/17	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/18
RA	357	.	NC_000913	4145137	0	C	T	bias_e_value=3812040	bias_p_value=0.821268	consensus_score=178.5	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=0.966338	major_base=T	major_cov=25/28	major_frequency=9.815e-01	minor_base=G	minor_cov=1/0	new_cov=25/28	polymorphism_frequency=9.815e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	358	.	NC_000913	4166554	0	C	T	consensus_score=19.3	frequency=1	major_base=T	major_cov=10/0	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/0	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/0
RA	359	.	NC_000913	4223638	0	T	C	consensus_score=313.7	frequency=1	major_base=C	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	360	.	NC_000913	4249810	0	C	A	bias_e_value=29.0894	bias_p_value=6.26703e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.8	fisher_strand_p_value=3.98257e-07	frequency=2.740e-01	ks_quality_p_value=1	major_base=C	major_cov=20/33	major_frequency=7.260e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.740e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=20/33	total_cov=40/33
RA	361	.	NC_000913	4256705	0	C	T	bias_e_value=3918600	bias_p_value=0.844226	consensus_score=295.6	fisher_strand_p_value=0.496629	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/46	major_frequency=9.778e-01	minor_base=G	minor_cov=0/2	new_cov=42/46	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	362	.	NC_000913	4259570	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=199.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/27	major_frequency=9.833e-01	minor_base=C	minor_cov=1/0	new_cov=32/27	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	363	.	NC_000913	4296268	0	T	C	bias_e_value=4351590	bias_p_value=0.93751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.9	fisher_strand_p_value=0.667984	frequency=2.692e-01	ks_quality_p_value=1	major_base=T	major_cov=11/8	major_frequency=7.308e-01	minor_base=C	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.692e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=11/8	total_cov=16/10
RA	364	.	NC_000913	4296380	1	.	C	consensus_score=154.3	frequency=1	major_base=C	major_cov=32/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/15
RA	365	.	NC_000913	4296380	2	.	G	consensus_score=157.6	frequency=1	major_base=G	major_cov=32/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/15
RA	366	.	NC_000913	4307944	0	C	T	consensus_score=314.8	frequency=1	major_base=T	major_cov=52/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/37
RA	367	.	NC_000913	4322288	0	A	G	bias_e_value=4641000	bias_p_value=0.999859	consensus_score=146.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983229	major_base=G	major_cov=28/15	major_frequency=9.773e-01	minor_base=A	minor_cov=1/0	new_cov=28/15	polymorphism_frequency=9.773e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=29/16
RA	368	.	NC_000913	4325000	0	C	T	consensus_score=224.6	frequency=1	major_base=T	major_cov=44/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/18
RA	369	.	NC_000913	4325644	0	C	T	consensus_score=258.5	frequency=1	major_base=T	major_cov=27/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/49
RA	370	.	NC_000913	4331890	0	C	T	consensus_score=350.5	frequency=1	major_base=T	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	371	.	NC_000913	4360965	0	C	A	bias_e_value=0.00145138	bias_p_value=3.12686e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.1	fisher_strand_p_value=1.19576e-11	frequency=2.650e-01	ks_quality_p_value=1	major_base=C	major_cov=30/56	major_frequency=7.350e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.650e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=30/56	total_cov=61/57
RA	372	.	NC_000913	4437890	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=413.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/65	major_frequency=9.918e-01	minor_base=G	minor_cov=0/1	new_cov=56/65	polymorphism_frequency=9.918e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/66
RA	373	.	NC_000913	4473900	0	C	T	consensus_score=241.6	frequency=1	major_base=T	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	374	.	NC_000913	4475493	0	T	C	consensus_score=429.7	frequency=1	major_base=C	major_cov=53/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/63
RA	375	.	NC_000913	4476605	0	G	A	consensus_score=306.6	frequency=1	major_base=A	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	376	.	NC_000913	4489016	0	C	T	consensus_score=400.9	frequency=1	major_base=T	major_cov=58/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/55
RA	377	.	NC_000913	4510238	0	T	G	bias_e_value=644769	bias_p_value=0.138909	consensus_score=400.0	fisher_strand_p_value=0.0310641	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=67/46	major_frequency=9.658e-01	minor_base=T	minor_cov=0/4	new_cov=67/46	polymorphism_frequency=9.658e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/4	total_cov=67/50
RA	378	.	NC_000913	4532409	0	T	G	consensus_score=280.2	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	379	.	NC_000913	4546601	0	C	T	bias_e_value=3798710	bias_p_value=0.818395	consensus_score=361.2	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/47	major_frequency=9.904e-01	minor_base=G	minor_cov=0/1	new_cov=56/47	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=57/48
RA	380	.	NC_000913	4636925	0	G	C	consensus_score=300.3	frequency=1	major_base=C	major_cov=50/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/29
RA	381	.	NC_000913	4638240	0	G	A	bias_e_value=3659320	bias_p_value=0.788365	consensus_score=234.4	fisher_strand_p_value=0.424658	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/30	major_frequency=9.863e-01	minor_base=G	minor_cov=0/1	new_cov=42/30	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=42/31
MC	382	.	NC_000913	257908	258683	766	0	left_inside_cov=0	left_outside_cov=108	right_inside_cov=3	right_outside_cov=111
MC	383	.	NC_000913	275509	359482	0	0	left_inside_cov=0	left_outside_cov=77	right_inside_cov=0	right_outside_cov=198
MC	384	.	NC_000913	366298	372748	0	0	left_inside_cov=0	left_outside_cov=1163	right_inside_cov=1	right_outside_cov=78
MC	385	.	NC_000913	574845	579183	941	0	left_inside_cov=20	left_outside_cov=24	right_inside_cov=0	right_outside_cov=81
MC	386	.	NC_000913	731299	732332	72	0	left_inside_cov=19	left_outside_cov=23	right_inside_cov=20	right_outside_cov=21
MC	387	.	NC_000913	1196324	1211459	0	0	left_inside_cov=20	left_outside_cov=21	right_inside_cov=19	right_outside_cov=22
MC	388	.	NC_000913	1978503	1979336	766	0	left_inside_cov=0	left_outside_cov=77	right_inside_cov=0	right_outside_cov=87
MC	389	.	NC_000913	2170367	2177386	1060	0	left_inside_cov=19	left_outside_cov=21	right_inside_cov=0	right_outside_cov=66
MC	390	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=60	right_inside_cov=2	right_outside_cov=62
MC	391	.	NC_000913	3423852	3424447	380	208	left_inside_cov=20	left_outside_cov=21	right_inside_cov=18	right_outside_cov=21
JC	392	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=45	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=292	max_left_minus=292	max_left_plus=280	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=148	max_min_right_minus=117	max_min_right_plus=148	max_pos_hash_score=588	max_right=289	max_right_minus=287	max_right_plus=289	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.20	new_junction_read_count=92	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90
JC	393	.	NC_000913	209134	-1	NC_000913	209264	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.314e-02	junction_possible_overlap_registers=283	key=NC_000913__209134__-1__NC_000913__209253__1__11____300__300__0__0	max_left=185	max_left_minus=185	max_left_plus=130	max_min_left=130	max_min_left_minus=0	max_min_left_plus=130	max_min_right=104	max_min_right_minus=104	max_min_right_plus=0	max_pos_hash_score=566	max_right=262	max_right_minus=104	max_right_plus=262	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.314e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=3
JC	394	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=45	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=287	max_min_left=130	max_min_left_minus=100	max_min_left_plus=130	max_min_right=144	max_min_right_minus=97	max_min_right_plus=144	max_pos_hash_score=572	max_right=283	max_right_minus=283	max_right_plus=280	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.45	new_junction_read_count=108	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=105
JC	395	.	NC_000913	274216	-1	NC_000913	274283	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.816e-01	junction_possible_overlap_registers=284	key=NC_000913__274216__-1__NC_000913__274273__1__10____300__300__0__1	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=1.816e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=14	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	396	.	NC_000913	274216	-1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.545e-02	junction_possible_overlap_registers=284	key=NC_000913__274216__-1__NC_000913__2066477__1__10____300__300__0__0	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=7.545e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=3
JC	397	.	NC_000913	275149	-1	NC_000913	579184	1	0	alignment_overlap=0	coverage_minus=46	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__275149__-1__NC_000913__579184__1__0____300__300__1__0	max_left=282	max_left_minus=282	max_left_plus=279	max_min_left=146	max_min_left_minus=146	max_min_left_plus=144	max_min_right=149	max_min_right_minus=149	max_min_right_plus=142	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=288	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.05	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=79
JC	398	.	NC_000913	275508	-1	NC_000913	372749	1	0	alignment_overlap=10	coverage_minus=39	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=284	key=NC_000913__275508__-1__NC_000913__372739__1__10____300__300__0__0	max_left=267	max_left_minus=262	max_left_plus=267	max_min_left=136	max_min_left_minus=119	max_min_left_plus=136	max_min_right=145	max_min_right_minus=145	max_min_right_plus=132	max_pos_hash_score=568	max_right=282	max_right_minus=267	max_right_plus=282	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.04	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=77
JC	399	.	NC_000913	359900	-1	NC_000913	360159	1	0	alignment_overlap=7	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.618e-03	junction_possible_overlap_registers=287	key=NC_000913__359900__-1__NC_000913__360152__1__7____300__300__0__0	max_left=236	max_left_minus=236	max_left_plus=221	max_min_left=46	max_min_left_minus=46	max_min_left_plus=46	max_min_right=127	max_min_right_minus=84	max_min_right_plus=127	max_pos_hash_score=574	max_right=129	max_right_minus=84	max_right_plus=129	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.11	new_junction_read_count=8	polymorphism_frequency=6.618e-03	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=17.68	side_1_overlap=7	side_1_possible_overlap_registers=294	side_1_read_count=1358	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=14.35	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=1076	side_2_redundant=0	total_non_overlap_reads=8
JC	400	.	NC_000913	360151	-1	NC_000913	360797	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.722e-03	junction_possible_overlap_registers=283	key=NC_000913__360151__-1__NC_000913__360786__1__11____300__300__0__0	max_left=43	max_left_minus=43	max_left_plus=43	max_min_left=43	max_min_left_minus=43	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=566	max_right=59	max_right_minus=59	max_right_plus=59	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.722e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=14.21	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=1092	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=14.74	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=1090	side_2_redundant=0	total_non_overlap_reads=3
JC	401	.	NC_000913	366297	-1	NC_000913	1317047	1	0	alignment_overlap=1	coverage_minus=639	coverage_plus=490	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__366297__-1__NC_000913__1317046__1__1____300__300__0__0	max_left=298	max_left_minus=297	max_left_plus=298	max_min_left=147	max_min_left_minus=147	max_min_left_plus=146	max_min_right=148	max_min_right_minus=148	max_min_right_plus=148	max_pos_hash_score=586	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=15.11	new_junction_read_count=1157	polymorphism_frequency=9.826e-01	pos_hash_score=249	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=1129
JC	402	.	NC_000913	574852	-1	NC_000913	574919	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.545e-01	junction_possible_overlap_registers=284	key=NC_000913__574852__-1__NC_000913__574909__1__10____300__300__0__1	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=1.545e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.22	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=17	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	403	.	NC_000913	574852	-1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.280e-02	junction_possible_overlap_registers=284	key=NC_000913__574852__-1__NC_000913__2066477__1__10____300__300__0__0	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=7.280e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.22	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=17	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=3
JC	404	.	NC_000913	688112	-1	NC_000913	688179	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.202e-01	junction_possible_overlap_registers=284	key=NC_000913__688112__-1__NC_000913__688169__1__10____300__300__0__1	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.202e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	405	.	NC_000913	688112	-1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.830e-02	junction_possible_overlap_registers=284	key=NC_000913__688112__-1__NC_000913__2066477__1__10____300__300__0__0	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=7.830e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=3
JC	406	.	NC_000913	781446	-1	NC_000913	781655	1	0	alignment_overlap=78	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.407e-01	junction_possible_overlap_registers=216	key=NC_000913__781446__-1__NC_000913__781577__1__78____300__300__0__0	max_left=74	max_left_minus=71	max_left_plus=74	max_min_left=74	max_min_left_minus=71	max_min_left_plus=74	max_min_right=35	max_min_right_minus=35	max_min_right_plus=0	max_pos_hash_score=432	max_right=184	max_right_minus=151	max_right_plus=184	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.09	new_junction_read_count=5	polymorphism_frequency=1.407e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=5
JC	407	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.218e-01	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=270	max_left_minus=270	max_left_plus=243	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=36	max_min_right_minus=8	max_min_right_plus=36	max_pos_hash_score=548	max_right=271	max_right_minus=8	max_right_plus=271	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=5	polymorphism_frequency=1.218e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=4
JC	408	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.546e-02	junction_possible_overlap_registers=274	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=154	max_left_minus=74	max_left_plus=154	max_min_left=74	max_min_left_minus=74	max_min_left_plus=15	max_min_right=124	max_min_right_minus=0	max_min_right_plus=124	max_pos_hash_score=548	max_right=271	max_right_minus=205	max_right_plus=271	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=9.546e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=47	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=4
JC	409	.	NC_000913	1293196	1	NC_000913	1428794	-1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1293196__1__NC_000913__1428794__-1__0____300__300__0__0	max_left=296	max_left_minus=264	max_left_plus=296	max_min_left=149	max_min_left_minus=135	max_min_left_plus=149	max_min_right=147	max_min_right_minus=147	max_min_right_plus=114	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=282	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=89	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=86
JC	410	.	NC_000913	1293199	-1	NC_000913	1427599	1	0	alignment_overlap=2	coverage_minus=37	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1293199__-1__NC_000913__1427597__1__2____300__300__0__0	max_left=296	max_left_minus=281	max_left_plus=296	max_min_left=140	max_min_left_minus=117	max_min_left_plus=140	max_min_right=129	max_min_right_minus=95	max_min_right_plus=129	max_pos_hash_score=584	max_right=295	max_right_minus=295	max_right_plus=274	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=83	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=82
JC	411	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=46	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=257	max_min_left=146	max_min_left_minus=139	max_min_left_plus=146	max_min_right=140	max_min_right_minus=139	max_min_right_plus=140	max_pos_hash_score=580	max_right=295	max_right_minus=276	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.35	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	412	.	NC_000913	1300365	-1	NC_000913	1300432	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=284	key=NC_000913__1300375__-1__NC_000913__1300432__1__10____300__300__1__0	max_left=156	max_left_minus=156	max_left_plus=92	max_min_left=92	max_min_left_minus=89	max_min_left_plus=92	max_min_right=134	max_min_right_minus=134	max_min_right_plus=0	max_pos_hash_score=568	max_right=201	max_right_minus=201	max_right_plus=198	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=10	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	413	.	NC_000913	1300432	1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=9.091e-02	junction_possible_overlap_registers=284	key=NC_000913__1300432__1__NC_000913__2066477__1__10____300__300__0__0	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=9.091e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=3
JC	414	.	NC_000913	1396910	-1	NC_000913	1396977	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.565e-01	junction_possible_overlap_registers=284	key=NC_000913__1396920__-1__NC_000913__1396977__1__10____300__300__1__0	max_left=156	max_left_minus=156	max_left_plus=92	max_min_left=92	max_min_left_minus=89	max_min_left_plus=92	max_min_right=134	max_min_right_minus=134	max_min_right_plus=0	max_pos_hash_score=568	max_right=201	max_right_minus=201	max_right_plus=198	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.565e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.12	side_2_overlap=10	side_2_possible_overlap_registers=294	side_2_read_count=9	side_2_redundant=0	total_non_overlap_reads=3
JC	415	.	NC_000913	1396977	1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.033e-02	junction_possible_overlap_registers=284	key=NC_000913__1396977__1__NC_000913__2066477__1__10____300__300__0__0	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=8.033e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=3
JC	416	.	NC_000913	1397241	-1	NC_000913	1978502	-1	-59	alignment_overlap=-59	coverage_minus=36	coverage_plus=29	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__1397241__-1__NC_000913__1978502__-1__-59__GCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATA__300__300__1__0	max_left=239	max_left_minus=224	max_left_plus=239	max_min_left=115	max_min_left_minus=115	max_min_left_plus=102	max_min_right=116	max_min_right_minus=116	max_min_right_plus=101	max_pos_hash_score=470	max_right=237	max_right_minus=232	max_right_plus=237	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=67	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=65	unique_read_sequence=GCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATA
JC	417	.	NC_000913	1879829	1	NC_000913	2515616	-1	0	alignment_overlap=2	coverage_minus=24	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1879827__1__NC_000913__2515616__-1__2____300__300__0__1	max_left=292	max_left_minus=290	max_left_plus=292	max_min_left=138	max_min_left_minus=137	max_min_left_plus=138	max_min_right=145	max_min_right_minus=145	max_min_right_plus=143	max_pos_hash_score=584	max_right=297	max_right_minus=297	max_right_plus=293	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.72	new_junction_read_count=55	polymorphism_frequency=9.642e-01	pos_hash_score=40	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=286	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=54
JC	418	.	NC_000913	1879834	-1	NC_000913	2514274	1	0	alignment_overlap=3	coverage_minus=21	coverage_plus=23	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1879837__-1__NC_000913__2514274__1__3____300__300__0__1	max_left=289	max_left_minus=288	max_left_plus=289	max_min_left=145	max_min_left_minus=145	max_min_left_plus=110	max_min_right=145	max_min_right_minus=145	max_min_right_plus=137	max_pos_hash_score=582	max_right=273	max_right_minus=272	max_right_plus=273	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.60	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=285	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=3	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=44
JC	419	.	NC_000913	1978503	1	NC_000913	2094553	1	0	alignment_overlap=0	coverage_minus=39	coverage_plus=31	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1978503__1__NC_000913__2094553__1__0____300__300__1__0	max_left=291	max_left_minus=291	max_left_plus=276	max_min_left=143	max_min_left_minus=140	max_min_left_plus=143	max_min_right=149	max_min_right_minus=149	max_min_right_plus=148	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=278	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.92	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=70
JC	420	.	NC_000913	1978503	1	NC_000913	3287645	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=3.252e-02	junction_possible_overlap_registers=294	key=NC_000913__1978503__1__NC_000913__3287645__-1__0____300__300__1__0	max_left=243	max_left_minus=163	max_left_plus=243	max_min_left=140	max_min_left_minus=0	max_min_left_plus=140	max_min_right=126	max_min_right_minus=126	max_min_right_plus=57	max_pos_hash_score=588	max_right=273	max_right_minus=126	max_right_plus=273	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.252e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.55	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=119	side_2_redundant=0	total_non_overlap_reads=4
JC	421	.	NC_000913	1979270	-1	NC_000913	2094561	-1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=28	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979270__-1__NC_000913__2094561__-1__0____300__300__1__0	max_left=287	max_left_minus=283	max_left_plus=287	max_min_left=147	max_min_left_minus=147	max_min_left_plus=140	max_min_right=131	max_min_right_minus=104	max_min_right_plus=131	max_pos_hash_score=588	max_right=290	max_right_minus=290	max_right_plus=282	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.73	new_junction_read_count=56	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=52
JC	422	.	NC_000913	1979337	1	NC_000913	2102943	-1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979337__1__NC_000913__2102943__-1__0____300__300__0__1	max_left=296	max_left_minus=294	max_left_plus=296	max_min_left=148	max_min_left_minus=148	max_min_left_plus=139	max_min_right=146	max_min_right_minus=129	max_min_right_plus=146	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=289	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.13	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=86
JC	423	.	NC_000913	2066420	-1	NC_000913	2066487	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.364e-02	junction_possible_overlap_registers=284	key=NC_000913__2066420__-1__NC_000913__2066477__1__10____300__300__0__0	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.364e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=3
JC	424	.	NC_000913	2066420	-1	NC_000913	2102077	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.028e-02	junction_possible_overlap_registers=284	key=NC_000913__2066420__-1__NC_000913__2102067__1__10____300__300__0__1	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.028e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	425	.	NC_000913	2066477	1	NC_000913	2102000	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=8.231e-02	junction_possible_overlap_registers=284	key=NC_000913__2066477__1__NC_000913__2102010__-1__10____300__300__0__0	max_left=156	max_left_minus=156	max_left_plus=92	max_min_left=92	max_min_left_minus=89	max_min_left_plus=92	max_min_right=134	max_min_right_minus=134	max_min_right_plus=0	max_pos_hash_score=568	max_right=201	max_right_minus=201	max_right_plus=198	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=8.231e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.09	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=3
JC	426	.	NC_000913	2066477	1	NC_000913	2289170	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=7.906e-02	junction_possible_overlap_registers=284	key=NC_000913__2066477__1__NC_000913__2289180__-1__10____300__300__0__0	max_left=156	max_left_minus=156	max_left_plus=92	max_min_left=92	max_min_left_minus=89	max_min_left_plus=92	max_min_right=134	max_min_right_minus=134	max_min_right_plus=0	max_pos_hash_score=568	max_right=201	max_right_minus=201	max_right_plus=198	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=7.906e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.13	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=3
JC	427	.	NC_000913	2066477	1	NC_000913	3131089	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=8.120e-02	junction_possible_overlap_registers=284	key=NC_000913__2066477__1__NC_000913__3131079__1__10____300__300__0__0	max_left=156	max_left_minus=156	max_left_plus=92	max_min_left=92	max_min_left_minus=89	max_min_left_plus=92	max_min_right=134	max_min_right_minus=134	max_min_right_plus=0	max_pos_hash_score=568	max_right=201	max_right_minus=201	max_right_plus=198	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=8.120e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.11	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=8	side_2_redundant=0	total_non_overlap_reads=3
JC	428	.	NC_000913	2066477	1	NC_000913	3365807	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=8.231e-02	junction_possible_overlap_registers=284	key=NC_000913__2066477__1__NC_000913__3365817__-1__10____300__300__0__0	max_left=156	max_left_minus=156	max_left_plus=92	max_min_left=92	max_min_left_minus=89	max_min_left_plus=92	max_min_right=134	max_min_right_minus=134	max_min_right_plus=0	max_pos_hash_score=568	max_right=201	max_right_minus=201	max_right_plus=198	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=8.231e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.09	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=3
JC	429	.	NC_000913	2066477	1	NC_000913	3652287	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=8.838e-02	junction_possible_overlap_registers=284	key=NC_000913__2066477__1__NC_000913__3652297__-1__10____300__300__0__0	max_left=156	max_left_minus=156	max_left_plus=92	max_min_left=92	max_min_left_minus=89	max_min_left_plus=92	max_min_right=134	max_min_right_minus=134	max_min_right_plus=0	max_pos_hash_score=568	max_right=201	max_right_minus=201	max_right_plus=198	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=8.838e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=3
JC	430	.	NC_000913	2102010	-1	NC_000913	2102077	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.073e-01	junction_possible_overlap_registers=284	key=NC_000913__2102010__-1__NC_000913__2102067__1__10____300__300__0__1	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.073e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.09	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	431	.	NC_000913	2170171	1	NC_000913	4440465	1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2170171__1__NC_000913__4440465__1__0____300__300__1__0	max_left=295	max_left_minus=289	max_left_plus=295	max_min_left=148	max_min_left_minus=141	max_min_left_plus=148	max_min_right=149	max_min_right_minus=149	max_min_right_plus=134	max_pos_hash_score=588	max_right=299	max_right_minus=299	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=88
JC	432	.	NC_000913	2171428	-1	NC_000913	2177387	1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2171428__-1__NC_000913__2177387__1__0____300__300__1__0	max_left=277	max_left_minus=276	max_left_plus=277	max_min_left=137	max_min_left_minus=137	max_min_left_plus=131	max_min_right=142	max_min_right_minus=140	max_min_right_plus=142	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=295	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.86	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=65
JC	433	.	NC_000913	2171428	-1	NC_000913	4440467	-1	0	alignment_overlap=1	coverage_minus=31	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2171428__-1__NC_000913__4440468__-1__1____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=291	max_min_left=145	max_min_left_minus=145	max_min_left_plus=122	max_min_right=144	max_min_right_minus=114	max_min_right_plus=144	max_pos_hash_score=586	max_right=294	max_right_minus=294	max_right_plus=288	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.97	new_junction_read_count=74	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	434	.	NC_000913	2289180	-1	NC_000913	2289247	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.370e-01	junction_possible_overlap_registers=284	key=NC_000913__2289180__-1__NC_000913__2289237__1__10____300__300__0__1	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.370e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.13	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=10	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	435	.	NC_000913	2357652	-1	NC_000913	2357851	1	-15	alignment_overlap=-15	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.902e-02	junction_possible_overlap_registers=279	key=NC_000913__2357652__-1__NC_000913__2357851__1__-15__GCGGCAGGAAGGACG__300__300__0__0	max_left=274	max_left_minus=274	max_left_plus=186	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=113	max_min_right_minus=113	max_min_right_plus=113	max_pos_hash_score=558	max_right=113	max_right_minus=113	max_right_plus=113	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.07	new_junction_read_count=5	polymorphism_frequency=5.902e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=GCGGCAGGAAGGACG
JC	436	.	NC_000913	2357690	-1	NC_000913	2357874	1	0	alignment_overlap=25	coverage_minus=5	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.274e-02	junction_possible_overlap_registers=269	key=NC_000913__2357690__-1__NC_000913__2357849__1__25____300__300__0__0	max_left=261	max_left_minus=261	max_left_plus=203	max_min_left=127	max_min_left_minus=127	max_min_left_plus=22	max_min_right=95	max_min_right_minus=32	max_min_right_plus=95	max_pos_hash_score=538	max_right=259	max_right_minus=259	max_right_plus=252	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.11	new_junction_read_count=8	polymorphism_frequency=9.274e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=8
JC	437	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=31	coverage_plus=27	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=290	max_left_minus=270	max_left_plus=290	max_min_left=145	max_min_left_minus=140	max_min_left_plus=145	max_min_right=140	max_min_right_minus=136	max_min_right_plus=140	max_pos_hash_score=572	max_right=290	max_right_minus=290	max_right_plus=285	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.80	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=58
JC	438	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=7	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.777e-01	junction_possible_overlap_registers=269	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=263	max_left_minus=263	max_left_plus=261	max_min_left=105	max_min_left_minus=105	max_min_left_plus=105	max_min_right=31	max_min_right_minus=31	max_min_right_plus=31	max_pos_hash_score=538	max_right=269	max_right_minus=218	max_right_plus=269	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.20	new_junction_read_count=14	polymorphism_frequency=1.777e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=14
JC	439	.	NC_000913	2877790	-1	NC_000913	2878219	1	0	alignment_overlap=17	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.843e-02	junction_possible_overlap_registers=277	key=NC_000913__2877790__-1__NC_000913__2878202__1__17____300__300__0__0	max_left=99	max_left_minus=99	max_left_plus=99	max_min_left=99	max_min_left_minus=99	max_min_left_plus=99	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=554	max_right=161	max_right_minus=161	max_right_plus=161	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.843e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=17	side_1_possible_overlap_registers=294	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=3
JC	440	.	NC_000913	2878282	-1	NC_000913	2878466	1	0	alignment_overlap=31	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.710e-02	junction_possible_overlap_registers=263	key=NC_000913__2878282__-1__NC_000913__2878435__1__31____300__300__0__0	max_left=160	max_left_minus=160	max_left_plus=89	max_min_left=89	max_min_left_minus=0	max_min_left_plus=89	max_min_right=109	max_min_right_minus=109	max_min_right_plus=0	max_pos_hash_score=526	max_right=179	max_right_minus=109	max_right_plus=179	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.710e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=31	side_1_possible_overlap_registers=294	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.37	side_2_overlap=0	side_2_possible_overlap_registers=263	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=3
JC	441	.	NC_000913	2947467	-1	NC_000913	2947688	1	0	alignment_overlap=83	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.749e-01	junction_possible_overlap_registers=211	key=NC_000913__2947467__-1__NC_000913__2947605__1__83____300__300__0__0	max_left=135	max_left_minus=135	max_left_plus=132	max_min_left=82	max_min_left_minus=21	max_min_left_plus=82	max_min_right=85	max_min_right_minus=82	max_min_right_plus=85	max_pos_hash_score=422	max_right=199	max_right_minus=199	max_right_plus=135	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.18	new_junction_read_count=10	polymorphism_frequency=1.749e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=83	side_1_possible_overlap_registers=294	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=10
JC	442	.	NC_000913	3131012	-1	NC_000913	3131079	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.796e-01	junction_possible_overlap_registers=284	key=NC_000913__3131022__-1__NC_000913__3131079__1__10____300__300__1__0	max_left=156	max_left_minus=156	max_left_plus=92	max_min_left=92	max_min_left_minus=89	max_min_left_plus=92	max_min_right=134	max_min_right_minus=134	max_min_right_plus=0	max_pos_hash_score=568	max_right=201	max_right_minus=201	max_right_plus=198	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.796e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=10	side_2_possible_overlap_registers=294	side_2_read_count=8	side_2_redundant=0	total_non_overlap_reads=3
JC	443	.	NC_000913	3187426	-1	NC_000913	4124494	1	0	alignment_overlap=0	coverage_minus=62	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3187426__-1__NC_000913__4124494__1__0____300__300__1__0	max_left=288	max_left_minus=288	max_left_plus=211	max_min_left=143	max_min_left_minus=139	max_min_left_plus=143	max_min_right=148	max_min_right_minus=148	max_min_right_plus=141	max_pos_hash_score=588	max_right=293	max_right_minus=293	max_right_plus=292	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.41	new_junction_read_count=108	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=106
JC	444	.	NC_000913	3365817	-1	NC_000913	3365884	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.073e-01	junction_possible_overlap_registers=284	key=NC_000913__3365817__-1__NC_000913__3365874__1__10____300__300__0__1	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.073e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.09	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	445	.	NC_000913	3468761	-1	NC_000913	3469086	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.806e-02	junction_possible_overlap_registers=292	key=NC_000913__3468761__-1__NC_000913__3469084__1__2____300__300__0__0	max_left=156	max_left_minus=156	max_left_plus=156	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=84	max_min_right_minus=84	max_min_right_plus=84	max_pos_hash_score=584	max_right=84	max_right_minus=84	max_right_plus=84	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.806e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=4
JC	446	.	NC_000913	3469405	-1	NC_000913	3469715	1	0	alignment_overlap=16	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.894e-02	junction_possible_overlap_registers=278	key=NC_000913__3469405__-1__NC_000913__3469699__1__16____300__300__0__0	max_left=234	max_left_minus=234	max_left_plus=178	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=105	max_min_right_minus=56	max_min_right_plus=105	max_pos_hash_score=556	max_right=105	max_right_minus=56	max_right_plus=105	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=3.894e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.39	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=4
JC	447	.	NC_000913	3652036	1	NC_000913	4044847	1	0	alignment_overlap=0	coverage_minus=57	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3652036__1__NC_000913__4044847__1__0____300__300__1__0	max_left=293	max_left_minus=278	max_left_plus=293	max_min_left=144	max_min_left_minus=122	max_min_left_plus=144	max_min_right=144	max_min_right_minus=138	max_min_right_plus=144	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=275	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.56	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=117
JC	448	.	NC_000913	3652297	-1	NC_000913	3652364	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.083e-01	junction_possible_overlap_registers=284	key=NC_000913__3652297__-1__NC_000913__3652354__1__10____300__300__0__1	max_left=201	max_left_minus=198	max_left_plus=201	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=92	max_min_right_minus=92	max_min_right_plus=89	max_pos_hash_score=568	max_right=156	max_right_minus=92	max_right_plus=156	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=6.083e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	449	.	NC_000913	3653230	-1	NC_000913	4044850	-1	0	alignment_overlap=0	coverage_minus=64	coverage_plus=32	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3653230__-1__NC_000913__4044850__-1__0____300__300__1__0	max_left=295	max_left_minus=294	max_left_plus=295	max_min_left=140	max_min_left_minus=140	max_min_left_plus=133	max_min_right=149	max_min_right_minus=149	max_min_right_plus=123	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.31	new_junction_read_count=101	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	450	.	NC_000913	4124498	-1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=32	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__4124499__-1__NC_000913__4498181__1__1____300__300__0__1	max_left=295	max_left_minus=288	max_left_plus=295	max_min_left=141	max_min_left_minus=135	max_min_left_plus=141	max_min_right=148	max_min_right_minus=148	max_min_right_plus=146	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=291	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.91	new_junction_read_count=70	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=70
JC	451	.	NC_000913	4295870	-1	NC_000913	4296434	1	0	alignment_overlap=39	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.647e-02	junction_possible_overlap_registers=255	key=NC_000913__4295870__-1__NC_000913__4296395__1__39____300__300__0__0	max_left=174	max_left_minus=174	max_left_plus=38	max_min_left=38	max_min_left_minus=0	max_min_left_plus=38	max_min_right=71	max_min_right_minus=71	max_min_right_plus=0	max_pos_hash_score=510	max_right=96	max_right_minus=71	max_right_plus=96	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.08	new_junction_read_count=5	polymorphism_frequency=8.647e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=39	side_1_possible_overlap_registers=294	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=255	side_2_read_count=51	side_2_redundant=0	total_non_overlap_reads=4
JC	452	.	NC_000913	4392437	-1	NC_000913	4392661	1	0	alignment_overlap=78	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.792e-02	junction_possible_overlap_registers=216	key=NC_000913__4392437__-1__NC_000913__4392583__1__78____300__300__0__0	max_left=118	max_left_minus=67	max_left_plus=118	max_min_left=67	max_min_left_minus=67	max_min_left_plus=11	max_min_right=101	max_min_right_minus=0	max_min_right_plus=101	max_pos_hash_score=432	max_right=211	max_right_minus=180	max_right_plus=211	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.07	new_junction_read_count=4	polymorphism_frequency=7.792e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=4
JC	453	.	NC_000913	4507459	1	NC_000913	4640419	-1	0	alignment_overlap=2	coverage_minus=47	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__4507459__1__NC_000913__4640421__-1__2____300__300__1__0	max_left=296	max_left_minus=296	max_left_plus=294	max_min_left=142	max_min_left_minus=133	max_min_left_plus=142	max_min_right=146	max_min_right_minus=137	max_min_right_plus=146	max_pos_hash_score=584	max_right=296	max_right_minus=277	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.32	new_junction_read_count=101	polymorphism_frequency=9.901e-01	pos_hash_score=60	prediction=consensus	read_count_offset=2	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=96
JC	454	.	NC_000913	4508679	-1	NC_000913	4640418	1	0	alignment_overlap=1	coverage_minus=60	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__4508679__-1__NC_000913__4640417__1__1____300__300__1__0	max_left=278	max_left_minus=267	max_left_plus=278	max_min_left=141	max_min_left_minus=138	max_min_left_plus=141	max_min_right=145	max_min_right_minus=145	max_min_right_plus=136	max_pos_hash_score=586	max_right=292	max_right_minus=292	max_right_plus=287	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	read_count_offset=2	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=80
JC	455	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=6	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=8.808e-02	junction_possible_overlap_registers=285	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=287	max_left_minus=287	max_left_plus=256	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=143	max_min_right_minus=143	max_min_right_plus=64	max_pos_hash_score=570	max_right=268	max_right_minus=143	max_right_plus=268	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.16	new_junction_read_count=12	polymorphism_frequency=8.808e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.93	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=148	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.41	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=105	side_2_redundant=0	total_non_overlap_reads=12
JC	456	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=8	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=9.183e-02	junction_possible_overlap_registers=285	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=268	max_left_minus=268	max_left_plus=230	max_min_left=122	max_min_left_minus=36	max_min_left_plus=122	max_min_right=143	max_min_right_minus=143	max_min_right_plus=61	max_pos_hash_score=570	max_right=282	max_right_minus=253	max_right_plus=282	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.17	new_junction_read_count=13	polymorphism_frequency=9.183e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.07	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=159	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.38	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=13
UN	457	.	NC_000913	15647	16487
UN	458	.	NC_000913	16490	16491
UN	459	.	NC_000913	20074	20297
UN	460	.	NC_000913	20300	20301
UN	461	.	NC_000913	223994	224495
UN	462	.	NC_000913	225164	225346
UN	463	.	NC_000913	225351	225351
UN	464	.	NC_000913	227266	228436
UN	465	.	NC_000913	257908	258683
UN	466	.	NC_000913	270788	270788
UN	467	.	NC_000913	270791	271023
UN	468	.	NC_000913	271034	271034
UN	469	.	NC_000913	274248	274869
UN	470	.	NC_000913	275509	359483
UN	471	.	NC_000913	366298	372748
UN	472	.	NC_000913	381526	382335
UN	473	.	NC_000913	391987	392700
UN	474	.	NC_000913	392706	392706
UN	475	.	NC_000913	392708	392709
UN	476	.	NC_000913	526097	526448
UN	477	.	NC_000913	567034	567034
UN	478	.	NC_000913	567038	567038
UN	479	.	NC_000913	567040	567040
UN	480	.	NC_000913	567042	567042
UN	481	.	NC_000913	567044	567044
UN	482	.	NC_000913	567046	567046
UN	483	.	NC_000913	567050	567051
UN	484	.	NC_000913	567055	567770
UN	485	.	NC_000913	567773	567774
UN	486	.	NC_000913	567780	567780
UN	487	.	NC_000913	574869	579183
UN	488	.	NC_000913	608264	608265
UN	489	.	NC_000913	608267	609084
UN	490	.	NC_000913	609086	609086
UN	491	.	NC_000913	688125	688785
UN	492	.	NC_000913	731414	731414
UN	493	.	NC_000913	731416	731416
UN	494	.	NC_000913	731421	732108
UN	495	.	NC_000913	732110	732111
UN	496	.	NC_000913	732113	732115
UN	497	.	NC_000913	732119	732119
UN	498	.	NC_000913	1094509	1094515
UN	499	.	NC_000913	1094517	1094519
UN	500	.	NC_000913	1094523	1095233
UN	501	.	NC_000913	1196369	1211413
UN	502	.	NC_000913	1299499	1300697
UN	503	.	NC_000913	1396315	1396315
UN	504	.	NC_000913	1396319	1396320
UN	505	.	NC_000913	1396323	1396966
UN	506	.	NC_000913	1468163	1468163
UN	507	.	NC_000913	1468165	1468974
UN	508	.	NC_000913	1469593	1470228
UN	509	.	NC_000913	1470231	1470232
UN	510	.	NC_000913	1528446	1528446
UN	511	.	NC_000913	1528490	1528893
UN	512	.	NC_000913	1528900	1528900
UN	513	.	NC_000913	1651118	1651296
UN	514	.	NC_000913	1978503	1979336
UN	515	.	NC_000913	2067008	2067050
UN	516	.	NC_000913	2067057	2067057
UN	517	.	NC_000913	2069192	2069192
UN	518	.	NC_000913	2069195	2070006
UN	519	.	NC_000913	2070020	2070020
UN	520	.	NC_000913	2102005	2102005
UN	521	.	NC_000913	2102010	2102663
UN	522	.	NC_000913	2170438	2177386
UN	523	.	NC_000913	2289194	2289194
UN	524	.	NC_000913	2289198	2289833
UN	525	.	NC_000913	2514528	2515375
UN	526	.	NC_000913	2515379	2515379
UN	527	.	NC_000913	2515382	2515382
UN	528	.	NC_000913	2558699	2565488
UN	529	.	NC_000913	2726330	2729018
UN	530	.	NC_000913	2729020	2729022
UN	531	.	NC_000913	2729843	2730738
UN	532	.	NC_000913	2996614	2996614
UN	533	.	NC_000913	2996616	2997410
UN	534	.	NC_000913	3130406	3131062
UN	535	.	NC_000913	3131068	3131069
UN	536	.	NC_000913	3131073	3131073
UN	537	.	NC_000913	3131075	3131076
UN	538	.	NC_000913	3131079	3131079
UN	539	.	NC_000913	3186365	3186366
UN	540	.	NC_000913	3186369	3187156
UN	541	.	NC_000913	3187160	3187160
UN	542	.	NC_000913	3365824	3365824
UN	543	.	NC_000913	3365827	3366470
UN	544	.	NC_000913	3423930	3423930
UN	545	.	NC_000913	3423933	3424388
UN	546	.	NC_000913	3424944	3428298
UN	547	.	NC_000913	3428302	3428303
UN	548	.	NC_000913	3470423	3470423
UN	549	.	NC_000913	3470425	3470425
UN	550	.	NC_000913	3470427	3470427
UN	551	.	NC_000913	3470430	3470432
UN	552	.	NC_000913	3470435	3470444
UN	553	.	NC_000913	3583689	3583689
UN	554	.	NC_000913	3583691	3583693
UN	555	.	NC_000913	3583696	3583700
UN	556	.	NC_000913	3583702	3583702
UN	557	.	NC_000913	3583704	3583704
UN	558	.	NC_000913	3583707	3583708
UN	559	.	NC_000913	3583710	3583912
UN	560	.	NC_000913	3619531	3620805
UN	561	.	NC_000913	3621354	3621354
UN	562	.	NC_000913	3621356	3622057
UN	563	.	NC_000913	3652289	3652954
UN	564	.	NC_000913	3762519	3763824
UN	565	.	NC_000913	3764327	3765036
UN	566	.	NC_000913	3765040	3765040
UN	567	.	NC_000913	3765043	3765043
UN	568	.	NC_000913	3765045	3765045
UN	569	.	NC_000913	3942320	3943137
UN	570	.	NC_000913	3944320	3945291
UN	571	.	NC_000913	4035443	4036844
UN	572	.	NC_000913	4038113	4038404
UN	573	.	NC_000913	4038990	4039127
UN	574	.	NC_000913	4039132	4039134
UN	575	.	NC_000913	4039664	4040326
UN	576	.	NC_000913	4166927	4167992
UN	577	.	NC_000913	4168807	4171378
UN	578	.	NC_000913	4171382	4171382
UN	579	.	NC_000913	4171384	4171384
UN	580	.	NC_000913	4171387	4171387
UN	581	.	NC_000913	4171391	4171391
UN	582	.	NC_000913	4171403	4171403
UN	583	.	NC_000913	4171406	4171406
UN	584	.	NC_000913	4171415	4171415
UN	585	.	NC_000913	4176829	4176840
UN	586	.	NC_000913	4208386	4209479
UN	587	.	NC_000913	4210309	4212849
UN	588	.	NC_000913	4498443	4499256
UN	589	.	NC_000913	4507754	4508413
UN	590	.	NC_000913	4508416	4508416
UN	591	.	NC_000913	4508418	4508418
UN	592	.	NC_000913	4508420	4508423
UN	593	.	NC_000913	4508425	4508425