#=GENOME_DIFF	1.0
#=CREATED	13:51:10 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8458_S9_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8458_S9_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8458_S9_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8458_S9_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8458_S9_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	428662141
#=CONVERTED-READS	1450761
#=INPUT-BASES	428752790
#=INPUT-READS	1451070
#=MAPPED-BASES	413037734
#=MAPPED-READS	1398795
SNP	1	245	NC_000913	1903	A
SNP	2	246	NC_000913	10696	T
SNP	3	248	NC_000913	23501	T
SNP	4	249	NC_000913	31683	T
SNP	5	250	NC_000913	42108	A
SNP	6	252	NC_000913	59968	T
SNP	7	253	NC_000913	76249	A
SNP	8	254	NC_000913	88571	A
SNP	9	255	NC_000913	113695	A
SNP	10	257	NC_000913	156068	G
SNP	11	258	NC_000913	157043	A
SNP	12	259	NC_000913	224625	A
SNP	13	260	NC_000913	227241	A
DEL	14	511,518	NC_000913	257908	776
SNP	15	262	NC_000913	466148	A
SNP	16	263	NC_000913	469271	A
SUB	17	264,265	NC_000913	480295	2	AA
SNP	18	266	NC_000913	502232	A
MOB	19	525,526	NC_000913	607765	IS150	1	3
SNP	20	268	NC_000913	662269	T
SNP	21	269	NC_000913	696470	T
SNP	22	270	NC_000913	728897	A
SNP	23	271	NC_000913	784677	A
SNP	24	272	NC_000913	816861	G
SNP	25	274	NC_000913	881531	T
MOB	26	524,537	NC_000913	884776	IS2	1	5
SNP	27	275	NC_000913	926263	T
DEL	28	276	NC_000913	926997	1
SNP	29	278	NC_000913	1147196	T
SNP	30	279	NC_000913	1156913	A
SNP	31	280	NC_000913	1169836	G
SNP	32	281	NC_000913	1189980	G
MOB	33	522,538	NC_000913	1199869	IS3	1	4	ins_start=GA
MOB	34	541,542	NC_000913	1229388	IS2	1	5
SNP	35	282	NC_000913	1282627	T
SNP	36	285	NC_000913	1290669	A
SNP	37	286	NC_000913	1297496	A
SNP	38	287	NC_000913	1301992	T
SNP	39	288	NC_000913	1306736	G
SNP	40	289	NC_000913	1322759	A
SNP	41	290	NC_000913	1337394	G
SNP	42	291	NC_000913	1358859	C
MOB	43	545,546	NC_000913	1399590	IS5	1	4
SNP	44	292	NC_000913	1401893	A
SNP	45	293	NC_000913	1453992	A
MOB	46	548,549	NC_000913	1590491	IS2	1	5
SNP	47	299	NC_000913	1597364	C
SNP	48	300	NC_000913	1643679	T
SNP	49	301	NC_000913	1652331	C
SNP	50	302	NC_000913	1776100	A
SNP	51	303	NC_000913	1894839	C
MOB	52	550,551	NC_000913	1909925	IS5	1	4
SNP	53	304	NC_000913	1955010	A
SNP	54	305	NC_000913	1994637	G
SNP	55	306	NC_000913	2040433	A
SNP	56	307	NC_000913	2041411	A
SNP	57	308	NC_000913	2046506	T
SNP	58	309	NC_000913	2085319	A
SNP	59	310	NC_000913	2086634	A
SNP	60	311	NC_000913	2103891	A
DEL	61	312	NC_000913	2111259	1
SNP	62	313	NC_000913	2122908	A
SNP	63	314	NC_000913	2134498	A
SNP	64	315	NC_000913	2137543	A
DEL	65	316,317	NC_000913	2173363	2
SNP	66	318	NC_000913	2173448	T
MOB	67	554,556	NC_000913	2174359	IS5	1	4
SNP	68	320	NC_000913	2191601	G
SNP	69	321	NC_000913	2191611	T
SNP	70	322	NC_000913	2215927	T
SNP	71	324	NC_000913	2259422	C
SNP	72	325	NC_000913	2262263	T
SNP	73	327	NC_000913	2348366	A
SNP	74	329	NC_000913	2380449	A
SNP	75	330	NC_000913	2388753	A
MOB	76	523,555	NC_000913	2406176	IS3	-1	3	ins_end=TCA
SNP	77	331	NC_000913	2407297	A
SNP	78	332	NC_000913	2432238	A
DEL	79	515,558	NC_000913	2558699	6790
SNP	80	334	NC_000913	2587112	T
SNP	81	335	NC_000913	2651157	A
SNP	82	336	NC_000913	2716686	A
SNP	83	338	NC_000913	2795848	A
SNP	84	340	NC_000913	2818563	A
SNP	85	341	NC_000913	2818838	A
SNP	86	342	NC_000913	2867455	A
SNP	87	343	NC_000913	2875647	C
SNP	88	344	NC_000913	2926772	A
SNP	89	346	NC_000913	3028546	A
SNP	90	348	NC_000913	3050472	A
SNP	91	350	NC_000913	3061916	T
SNP	92	351	NC_000913	3065449	A
SNP	93	352	NC_000913	3065861	A
SNP	94	353	NC_000913	3089260	C
SNP	95	354	NC_000913	3090968	A
SNP	96	355	NC_000913	3104887	A
SNP	97	356	NC_000913	3120786	A
SNP	98	357	NC_000913	3121033	C
SNP	99	358	NC_000913	3127981	A
SNP	100	359	NC_000913	3130161	A
SNP	101	360	NC_000913	3132077	A
SNP	102	361	NC_000913	3133175	A
SNP	103	362	NC_000913	3134263	A
SNP	104	363	NC_000913	3145944	A
SNP	105	364	NC_000913	3150316	A
SNP	106	365	NC_000913	3162216	A
SNP	107	366	NC_000913	3176625	A
SNP	108	367	NC_000913	3179383	A
SNP	109	368	NC_000913	3186297	A
SNP	110	369	NC_000913	3193351	A
SNP	111	370	NC_000913	3204617	A
DEL	112	371	NC_000913	3207549	1
SNP	113	372	NC_000913	3219128	A
SNP	114	373	NC_000913	3224895	T
SNP	115	374	NC_000913	3227339	T
SNP	116	375	NC_000913	3240423	T
SNP	117	376	NC_000913	3256157	T
SNP	118	377	NC_000913	3270497	T
SNP	119	378	NC_000913	3275902	T
SNP	120	379	NC_000913	3292312	T
SNP	121	380	NC_000913	3304647	C
SNP	122	381	NC_000913	3329743	T
SNP	123	382	NC_000913	3388041	G
SNP	124	383	NC_000913	3486688	G
SNP	125	384	NC_000913	3506393	C
SNP	126	385	NC_000913	3524184	T
SNP	127	386	NC_000913	3558291	T
SNP	128	387	NC_000913	3559621	T
SNP	129	388	NC_000913	3560119	G
INS	130	389	NC_000913	3560455	G
SNP	131	390	NC_000913	3579050	A
SNP	132	391	NC_000913	3581316	A
SNP	133	392	NC_000913	3581850	A
SNP	134	393	NC_000913	3583969	A
SNP	135	394	NC_000913	3585517	A
SNP	136	395	NC_000913	3587531	A
SNP	137	396	NC_000913	3588787	A
SNP	138	397	NC_000913	3589956	A
SNP	139	398	NC_000913	3621090	T
SNP	140	400	NC_000913	3647677	T
SNP	141	401	NC_000913	3707883	A
SNP	142	402	NC_000913	3707947	A
SNP	143	403	NC_000913	3725176	G
INS	144	406	NC_000913	3815883	C
SNP	145	407	NC_000913	3827026	T
SNP	146	410	NC_000913	3927292	C
SNP	147	411	NC_000913	3933287	A
SNP	148	412	NC_000913	3937909	A
SNP	149	413	NC_000913	3937997	A
DEL	150	414	NC_000913	3938441	1
SNP	151	415	NC_000913	3941874	T
SNP	152	416	NC_000913	3946246	A
SNP	153	417	NC_000913	3950099	T
SNP	154	418	NC_000913	3956003	A
SNP	155	419	NC_000913	4033318	T
SNP	156	422	NC_000913	4084932	T
SNP	157	424	NC_000913	4139298	A
SNP	158	425	NC_000913	4160157	A
SNP	159	427	NC_000913	4171728	T
SNP	160	428	NC_000913	4171781	G
SNP	161	429	NC_000913	4175827	T
SNP	162	430	NC_000913	4178883	T
SNP	163	431	NC_000913	4179001	T
SNP	164	432	NC_000913	4185777	T
SNP	165	433	NC_000913	4193177	T
SNP	166	434	NC_000913	4193820	T
SNP	167	435	NC_000913	4219752	T
SNP	168	436	NC_000913	4222743	T
SNP	169	437	NC_000913	4223638	C
SNP	170	438	NC_000913	4224483	T
SNP	171	439	NC_000913	4234479	T
SNP	172	440	NC_000913	4249684	T
SNP	173	441	NC_000913	4265668	T
SNP	174	442	NC_000913	4269449	T
SNP	175	443	NC_000913	4271130	T
SNP	176	444	NC_000913	4278488	T
SNP	177	445	NC_000913	4282536	T
SNP	178	446	NC_000913	4284077	T
SNP	179	447	NC_000913	4286033	T
SNP	180	448	NC_000913	4296300	T
INS	181	449,450	NC_000913	4296381	GC
SNP	182	451	NC_000913	4297469	T
SNP	183	452	NC_000913	4298199	T
SNP	184	453	NC_000913	4301071	T
SNP	185	454	NC_000913	4303755	T
SNP	186	455	NC_000913	4311337	T
SNP	187	456	NC_000913	4320079	T
SNP	188	457	NC_000913	4320785	T
SNP	189	458	NC_000913	4322605	T
SNP	190	459	NC_000913	4325644	T
SNP	191	460	NC_000913	4325837	T
SNP	192	461	NC_000913	4332310	T
SNP	193	462	NC_000913	4337864	T
SNP	194	463	NC_000913	4342825	T
MOB	195	560,572	NC_000913	4344081	IS2	-1	5
SNP	196	464	NC_000913	4349259	T
SNP	197	465	NC_000913	4351519	T
SNP	198	466	NC_000913	4351590	T
MOB	199	568,570	NC_000913	4354508	IS150	1	3
SNP	200	467	NC_000913	4359909	T
SNP	201	469	NC_000913	4364798	T
SNP	202	470	NC_000913	4366668	T
SNP	203	471	NC_000913	4371401	T
SNP	204	472	NC_000913	4373421	T
SNP	205	473	NC_000913	4380469	T
SNP	206	474	NC_000913	4388120	T
SNP	207	475	NC_000913	4389838	T
SNP	208	476	NC_000913	4401607	T
SNP	209	477	NC_000913	4403010	T
SNP	210	478	NC_000913	4407045	T
SNP	211	479	NC_000913	4414625	T
SNP	212	480	NC_000913	4418862	T
SNP	213	481	NC_000913	4426929	T
SNP	214	482	NC_000913	4433459	T
MOB	215	553,563	NC_000913	4434629	IS1	-1	8
SNP	216	483	NC_000913	4435124	T
SNP	217	484	NC_000913	4435750	T
SNP	218	485	NC_000913	4451280	T
SNP	219	486	NC_000913	4457392	T
SNP	220	487	NC_000913	4482901	T
SNP	221	488	NC_000913	4486869	A
SNP	222	489	NC_000913	4487022	T
SNP	223	490	NC_000913	4489775	T
SNP	224	491	NC_000913	4494499	T
SNP	225	492	NC_000913	4501500	T
SNP	226	493	NC_000913	4510238	G
SNP	227	494	NC_000913	4517355	T
SNP	228	495	NC_000913	4524401	T
SNP	229	496	NC_000913	4524596	T
SNP	230	497	NC_000913	4529039	T
SNP	231	498	NC_000913	4530797	T
SNP	232	499	NC_000913	4541261	T
MOB	233	564,565	NC_000913	4542042	IS1	1	8
SNP	234	500	NC_000913	4553671	T
SNP	235	501	NC_000913	4564385	T
SNP	236	502	NC_000913	4570550	T
SNP	237	503	NC_000913	4571280	T
SNP	238	504	NC_000913	4585673	T
SNP	239	505	NC_000913	4587365	T
SNP	240	506	NC_000913	4604517	T
SNP	241	507	NC_000913	4630295	T
SNP	242	508	NC_000913	4636925	C
SNP	243	509	NC_000913	4638058	T
SNP	244	510	NC_000913	4638240	A
RA	245	.	NC_000913	1903	0	G	A	consensus_score=321.7	frequency=1	major_base=A	major_cov=57/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/38
RA	246	.	NC_000913	10696	0	C	T	consensus_score=219.0	frequency=1	major_base=T	major_cov=27/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/39
RA	247	.	NC_000913	12152	0	G	T	bias_e_value=0.520199	bias_p_value=1.12072e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.7	fisher_strand_p_value=5.60364e-09	frequency=3.145e-01	ks_quality_p_value=1	major_base=G	major_cov=40/45	major_frequency=6.855e-01	minor_base=T	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=3.145e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=40/45	total_cov=40/84
RA	248	.	NC_000913	23501	0	C	T	consensus_score=238.4	frequency=1	major_base=T	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	249	.	NC_000913	31683	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=300.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998853	major_base=T	major_cov=41/42	major_frequency=9.881e-01	minor_base=G	minor_cov=0/1	new_cov=41/42	polymorphism_frequency=9.881e-01	polymorphism_score=-7.0	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	250	.	NC_000913	42108	0	G	A	consensus_score=507.9	frequency=1	major_base=A	major_cov=77/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/73
RA	251	.	NC_000913	58065	0	C	A	bias_e_value=6.96923	bias_p_value=1.50146e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.7	fisher_strand_p_value=8.7004e-08	frequency=3.261e-01	ks_quality_p_value=1	major_base=C	major_cov=30/32	major_frequency=6.739e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.261e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=30/32	total_cov=60/32
RA	252	.	NC_000913	59968	0	C	T	bias_e_value=3705110	bias_p_value=0.798231	consensus_score=174.3	fisher_strand_p_value=0.436364	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/31	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=23/31	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=24/31
RA	253	.	NC_000913	76249	0	G	A	consensus_score=308.4	frequency=1	major_base=A	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	254	.	NC_000913	88571	0	G	A	consensus_score=301.4	frequency=1	major_base=A	major_cov=46/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	255	.	NC_000913	113695	0	G	A	bias_e_value=3914070	bias_p_value=0.84325	consensus_score=357.8	fisher_strand_p_value=0.495238	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/52	major_frequency=9.810e-01	minor_base=C	minor_cov=2/0	new_cov=51/52	polymorphism_frequency=9.810e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/52
RA	256	.	NC_000913	141849	0	C	A	bias_e_value=0.000368677	bias_p_value=7.94281e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.4	fisher_strand_p_value=2.88065e-12	frequency=2.710e-01	ks_quality_p_value=1	major_base=C	major_cov=23/55	major_frequency=7.290e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.710e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=23/55	total_cov=52/56
RA	257	.	NC_000913	156068	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=431.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=70/44	major_frequency=9.913e-01	minor_base=A	minor_cov=1/0	new_cov=70/44	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=71/45
RA	258	.	NC_000913	157043	0	G	A	consensus_score=419.0	frequency=1	major_base=A	major_cov=73/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/52
RA	259	.	NC_000913	224625	0	T	A	consensus_score=99.6	frequency=1	major_base=A	major_cov=23/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/11
RA	260	.	NC_000913	227241	0	G	A	consensus_score=25.6	frequency=1	major_base=A	major_cov=17/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/1
RA	261	.	NC_000913	442025	0	C	A	bias_e_value=6.27325	bias_p_value=1.35151e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.3	fisher_strand_p_value=7.78118e-08	frequency=2.759e-01	ks_quality_p_value=1	major_base=C	major_cov=26/37	major_frequency=7.241e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.759e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=26/37	total_cov=50/37
RA	262	.	NC_000913	466148	0	G	A	consensus_score=428.8	frequency=1	major_base=A	major_cov=57/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/61
RA	263	.	NC_000913	469271	0	G	A	bias_e_value=3918300	bias_p_value=0.844161	consensus_score=268.4	fisher_strand_p_value=0.496537	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/38	major_frequency=9.756e-01	minor_base=G	minor_cov=2/0	new_cov=42/38	polymorphism_frequency=9.756e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=2/0	total_cov=44/38
RA	264	.	NC_000913	480295	0	G	A	consensus_score=435.1	frequency=1	major_base=A	major_cov=55/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/64
RA	265	.	NC_000913	480296	0	G	A	consensus_score=425.9	frequency=1	major_base=A	major_cov=55/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/64
RA	266	.	NC_000913	502232	0	G	A	consensus_score=387.4	frequency=1	major_base=A	major_cov=51/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/57
RA	267	.	NC_000913	565683	0	G	T	bias_e_value=1182120	bias_p_value=0.254676	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.9	fisher_strand_p_value=0.0694472	frequency=2.212e-01	ks_quality_p_value=1	major_base=G	major_cov=51/37	major_frequency=7.788e-01	minor_base=T	minor_cov=9/16	new_cov=9/16	polymorphism_frequency=2.212e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=51/37	total_cov=62/53
RA	268	.	NC_000913	662269	0	C	T	bias_e_value=3950590	bias_p_value=0.851116	consensus_score=301.4	fisher_strand_p_value=0.506617	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/50	major_frequency=9.778e-01	minor_base=G	minor_cov=0/2	new_cov=38/50	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/52
RA	269	.	NC_000913	696470	0	C	T	bias_e_value=4224760	bias_p_value=0.910185	consensus_score=279.9	fisher_strand_p_value=0.60731	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/43	major_frequency=9.647e-01	minor_base=C	minor_cov=2/1	new_cov=39/43	polymorphism_frequency=9.647e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=2/1	total_cov=41/44
RA	270	.	NC_000913	728897	0	G	A	consensus_score=452.5	frequency=1	major_base=A	major_cov=75/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/61
RA	271	.	NC_000913	784677	0	G	A	consensus_score=259.8	frequency=1	major_base=A	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	272	.	NC_000913	816861	0	A	G	consensus_score=336.0	frequency=1	major_base=G	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	273	.	NC_000913	847955	0	G	A	bias_e_value=5.901e-08	bias_p_value=1.27132e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.2	fisher_strand_p_value=3.47391e-16	frequency=2.946e-01	ks_quality_p_value=1	major_base=G	major_cov=66/25	major_frequency=7.054e-01	minor_base=A	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.946e-01	polymorphism_score=45.9	prediction=polymorphism	ref_cov=66/25	total_cov=66/63
RA	274	.	NC_000913	881531	0	A	T	consensus_score=359.3	frequency=1	major_base=T	major_cov=54/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	275	.	NC_000913	926263	0	C	T	consensus_score=413.8	frequency=1	major_base=T	major_cov=49/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/67
RA	276	.	NC_000913	926997	0	C	.	consensus_score=381.0	frequency=1	major_base=.	major_cov=24/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/57
RA	277	.	NC_000913	1001094	0	G	T	bias_e_value=5.71701	bias_p_value=1.23168e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.7	fisher_strand_p_value=7.05126e-08	frequency=3.656e-01	ks_quality_p_value=1	major_base=G	major_cov=29/30	major_frequency=6.344e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.656e-01	polymorphism_score=22.4	prediction=polymorphism	ref_cov=29/30	total_cov=29/64
RA	278	.	NC_000913	1147196	0	C	T	consensus_score=221.3	frequency=1	major_base=T	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	279	.	NC_000913	1156913	0	G	A	consensus_score=297.4	frequency=1	major_base=A	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	280	.	NC_000913	1169836	0	A	G	bias_e_value=3720850	bias_p_value=0.801622	consensus_score=316.3	fisher_strand_p_value=0.440476	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=36/47	major_frequency=9.881e-01	minor_base=T	minor_cov=1/0	new_cov=36/47	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	281	.	NC_000913	1189980	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=288.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=33/46	major_frequency=9.875e-01	minor_base=A	minor_cov=0/1	new_cov=33/46	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/47
RA	282	.	NC_000913	1282627	0	C	T	bias_e_value=3636320	bias_p_value=0.783411	consensus_score=256.8	fisher_strand_p_value=0.418919	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/43	major_frequency=9.865e-01	minor_base=C	minor_cov=1/0	new_cov=30/43	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/43
RA	283	.	NC_000913	1286870	0	C	A	bias_e_value=3491820	bias_p_value=0.752281	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.5	fisher_strand_p_value=0.384784	frequency=2.759e-01	ks_quality_p_value=1	major_base=C	major_cov=20/22	major_frequency=7.241e-01	minor_base=A	minor_cov=10/6	new_cov=10/6	polymorphism_frequency=2.759e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=20/22	total_cov=30/28
RA	284	.	NC_000913	1286874	0	G	A	bias_e_value=3372810	bias_p_value=0.72664	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.3	fisher_strand_p_value=0.524804	frequency=2.069e-01	ks_quality_p_value=0.68382	major_base=G	major_cov=25/21	major_frequency=7.931e-01	minor_base=A	minor_cov=5/7	new_cov=5/7	polymorphism_frequency=2.069e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=25/21	total_cov=30/28
RA	285	.	NC_000913	1290669	0	G	A	consensus_score=265.8	frequency=1	major_base=A	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	286	.	NC_000913	1297496	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=236.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/30	major_frequency=9.861e-01	minor_base=C	minor_cov=1/0	new_cov=41/30	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	287	.	NC_000913	1301992	0	A	T	consensus_score=275.7	frequency=1	major_base=T	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	288	.	NC_000913	1306736	0	T	G	consensus_score=267.8	frequency=1	major_base=G	major_cov=49/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/22
RA	289	.	NC_000913	1322759	0	G	A	bias_e_value=3700990	bias_p_value=0.797343	consensus_score=287.0	fisher_strand_p_value=0.435294	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/36	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=48/36	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/37
RA	290	.	NC_000913	1337394	0	A	G	bias_e_value=2455650	bias_p_value=0.529047	consensus_score=281.7	fisher_strand_p_value=0.204479	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=43/34	major_frequency=9.747e-01	minor_base=T	minor_cov=0/2	new_cov=43/34	polymorphism_frequency=9.747e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	291	.	NC_000913	1358859	0	T	C	consensus_score=226.8	frequency=1	major_base=C	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	292	.	NC_000913	1401893	0	G	A	consensus_score=333.9	frequency=1	major_base=A	major_cov=42/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/52
RA	293	.	NC_000913	1453992	0	G	A	consensus_score=376.5	frequency=1	major_base=A	major_cov=34/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/74
RA	294	.	NC_000913	1466393	0	C	T	bias_e_value=3026250	bias_p_value=0.651976	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.2	fisher_strand_p_value=0.292426	frequency=2.222e-01	ks_quality_p_value=1	major_base=C	major_cov=14/21	major_frequency=7.778e-01	minor_base=T	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=2.222e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=14/21	total_cov=17/29
RA	295	.	NC_000913	1466432	0	A	G	bias_e_value=4436780	bias_p_value=0.955861	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.6	fisher_strand_p_value=0.717994	frequency=2.128e-01	ks_quality_p_value=1	major_base=A	major_cov=16/21	major_frequency=7.872e-01	minor_base=G	minor_cov=3/7	new_cov=3/7	polymorphism_frequency=2.128e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=16/21	total_cov=19/28
RA	296	.	NC_000913	1466438	0	T	G	bias_e_value=3972540	bias_p_value=0.855847	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.7	fisher_strand_p_value=0.513644	frequency=2.889e-01	ks_quality_p_value=1	major_base=T	major_cov=14/18	major_frequency=7.111e-01	minor_base=G	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=2.889e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=14/18	total_cov=19/28
RA	297	.	NC_000913	1502770	0	T	C	bias_e_value=401.145	bias_p_value=8.64228e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.4	fisher_strand_p_value=6.69186e-06	frequency=2.703e-01	ks_quality_p_value=1	major_base=T	major_cov=29/25	major_frequency=7.297e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.703e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=29/25	total_cov=29/45
RA	298	.	NC_000913	1579973	0	C	A	bias_e_value=30.4482	bias_p_value=6.55978e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.6	fisher_strand_p_value=4.18155e-07	frequency=2.097e-01	ks_quality_p_value=1	major_base=C	major_cov=49/49	major_frequency=7.903e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.097e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=49/49	total_cov=75/49
RA	299	.	NC_000913	1597364	0	T	C	consensus_score=326.5	frequency=1	major_base=C	major_cov=41/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	300	.	NC_000913	1643679	0	A	T	consensus_score=254.9	frequency=1	major_base=T	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	301	.	NC_000913	1652331	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=366.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=48/49	major_frequency=9.898e-01	minor_base=A	minor_cov=1/0	new_cov=48/49	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/49
RA	302	.	NC_000913	1776100	0	G	A	consensus_score=268.9	frequency=1	major_base=A	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	303	.	NC_000913	1894839	0	T	C	consensus_score=282.2	frequency=1	major_base=C	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	304	.	NC_000913	1955010	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=282.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/40	major_frequency=9.882e-01	minor_base=G	minor_cov=1/0	new_cov=44/40	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/40
RA	305	.	NC_000913	1994637	0	A	G	consensus_score=303.7	frequency=1	major_base=G	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	306	.	NC_000913	2040433	0	C	A	bias_e_value=3763580	bias_p_value=0.810828	consensus_score=248.2	fisher_strand_p_value=0.452055	frequency=1	ks_quality_p_value=0.99962	major_base=A	major_cov=32/40	major_frequency=9.863e-01	minor_base=C	minor_cov=1/0	new_cov=32/40	polymorphism_frequency=9.863e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=1/0	total_cov=33/41
RA	307	.	NC_000913	2041411	0	G	A	consensus_score=291.7	frequency=1	major_base=A	major_cov=32/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/47
RA	308	.	NC_000913	2046506	0	G	T	consensus_score=387.2	frequency=1	major_base=T	major_cov=56/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/53
RA	309	.	NC_000913	2085319	0	G	A	consensus_score=368.1	frequency=1	major_base=A	major_cov=76/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/31
RA	310	.	NC_000913	2086634	0	G	A	consensus_score=295.6	frequency=1	major_base=A	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	311	.	NC_000913	2103891	0	G	A	consensus_score=394.7	frequency=1	major_base=A	major_cov=73/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/41
RA	312	.	NC_000913	2111259	0	G	.	consensus_score=447.1	frequency=1	major_base=.	major_cov=40/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/54
RA	313	.	NC_000913	2122908	0	G	A	bias_e_value=3355560	bias_p_value=0.722924	consensus_score=254.1	fisher_strand_p_value=0.355263	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/26	major_frequency=9.868e-01	minor_base=G	minor_cov=0/1	new_cov=49/26	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=49/27
RA	314	.	NC_000913	2134498	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=242.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/32	major_frequency=9.855e-01	minor_base=G	minor_cov=1/0	new_cov=36/32	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/32
RA	315	.	NC_000913	2137543	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=469.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999577	major_base=A	major_cov=79/58	major_frequency=9.928e-01	minor_base=C	minor_cov=1/0	new_cov=79/58	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/58
RA	316	.	NC_000913	2173363	0	C	.	bias_e_value=3928750	bias_p_value=0.846412	consensus_score=290.2	fisher_strand_p_value=0.499767	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=35/29	major_frequency=9.697e-01	minor_base=C	minor_cov=2/0	new_cov=35/29	polymorphism_frequency=9.697e-01	polymorphism_score=-0.6	prediction=consensus	ref_cov=2/0	total_cov=37/29
RA	317	.	NC_000913	2173364	0	C	.	bias_e_value=3928750	bias_p_value=0.846412	consensus_score=290.2	fisher_strand_p_value=0.499767	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=35/29	major_frequency=9.697e-01	minor_base=C	minor_cov=2/0	new_cov=35/29	polymorphism_frequency=9.697e-01	polymorphism_score=-0.6	prediction=consensus	ref_cov=2/0	total_cov=37/29
RA	318	.	NC_000913	2173448	0	C	T	bias_e_value=3903520	bias_p_value=0.840976	consensus_score=167.6	fisher_strand_p_value=0.492017	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/26	major_frequency=9.623e-01	minor_base=C	minor_cov=0/2	new_cov=25/26	polymorphism_frequency=9.623e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/2	total_cov=25/28
RA	319	.	NC_000913	2185849	0	G	T	bias_e_value=63.2072	bias_p_value=1.36174e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.9	fisher_strand_p_value=9.13557e-07	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=44/37	major_frequency=7.500e-01	minor_base=T	minor_cov=1/26	new_cov=1/26	polymorphism_frequency=2.500e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=44/37	total_cov=45/63
RA	320	.	NC_000913	2191601	0	T	G	consensus_score=400.1	frequency=1	major_base=G	major_cov=45/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/60
RA	321	.	NC_000913	2191611	0	C	T	consensus_score=367.3	frequency=1	major_base=T	major_cov=47/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/61
RA	322	.	NC_000913	2215927	0	C	T	consensus_score=188.6	frequency=1	major_base=T	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	323	.	NC_000913	2244442	0	C	A	bias_e_value=19.2738	bias_p_value=4.15236e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.6	fisher_strand_p_value=2.56709e-07	frequency=2.329e-01	ks_quality_p_value=1	major_base=C	major_cov=18/38	major_frequency=7.671e-01	minor_base=A	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.329e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=18/38	total_cov=35/38
RA	324	.	NC_000913	2259422	0	A	C	consensus_score=487.9	frequency=1	major_base=C	major_cov=80/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=80/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/49
RA	325	.	NC_000913	2262263	0	C	T	consensus_score=271.2	frequency=1	major_base=T	major_cov=39/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/40
RA	326	.	NC_000913	2288418	0	G	T	bias_e_value=0.0213149	bias_p_value=4.5921e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.2	fisher_strand_p_value=1.96668e-10	frequency=2.581e-01	ks_quality_p_value=1	major_base=G	major_cov=54/38	major_frequency=7.419e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.581e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=54/38	total_cov=54/70
RA	327	.	NC_000913	2348366	0	C	A	consensus_score=192.9	frequency=1	major_base=A	major_cov=22/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/34
RA	328	.	NC_000913	2365840	0	T	G	bias_e_value=17.8801	bias_p_value=3.85209e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.0	fisher_strand_p_value=2.36974e-07	frequency=2.778e-01	ks_quality_p_value=1	major_base=T	major_cov=37/41	major_frequency=7.222e-01	minor_base=G	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.778e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=37/41	total_cov=37/72
RA	329	.	NC_000913	2380449	0	G	A	consensus_score=269.2	frequency=1	major_base=A	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	330	.	NC_000913	2388753	0	G	A	bias_e_value=3777570	bias_p_value=0.813841	consensus_score=565.8	fisher_strand_p_value=0.455696	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=71/86	major_frequency=9.937e-01	minor_base=G	minor_cov=1/0	new_cov=71/86	polymorphism_frequency=9.937e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=72/86
RA	331	.	NC_000913	2407297	0	G	A	consensus_score=398.4	frequency=1	major_base=A	major_cov=45/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/65
RA	332	.	NC_000913	2432238	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=189.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/39	major_frequency=9.815e-01	minor_base=G	minor_cov=0/1	new_cov=14/39	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=14/40
RA	333	.	NC_000913	2466633	0	C	A	bias_e_value=8.5392	bias_p_value=1.83969e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.9	fisher_strand_p_value=1.07953e-07	frequency=2.843e-01	ks_quality_p_value=1	major_base=C	major_cov=35/38	major_frequency=7.157e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.843e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=35/38	total_cov=64/38
RA	334	.	NC_000913	2587112	0	C	T	consensus_score=245.2	frequency=1	major_base=T	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	335	.	NC_000913	2651157	0	G	A	consensus_score=327.3	frequency=1	major_base=A	major_cov=58/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/39
RA	336	.	NC_000913	2716686	0	G	A	consensus_score=416.3	frequency=1	major_base=A	major_cov=48/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/73
RA	337	.	NC_000913	2722838	0	G	T	bias_e_value=4.12427e-05	bias_p_value=8.88535e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.1	fisher_strand_p_value=2.97741e-13	frequency=2.832e-01	ks_quality_p_value=1	major_base=G	major_cov=57/24	major_frequency=7.168e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.832e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=57/24	total_cov=57/56
RA	338	.	NC_000913	2795848	0	G	A	consensus_score=208.1	frequency=1	major_base=A	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	339	.	NC_000913	2815937	0	G	T	bias_e_value=2.2779	bias_p_value=4.90752e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.7	fisher_strand_p_value=2.66107e-08	frequency=2.619e-01	ks_quality_p_value=1	major_base=G	major_cov=45/48	major_frequency=7.381e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.619e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=45/48	total_cov=46/81
RA	340	.	NC_000913	2818563	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=308.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=58/37	major_frequency=9.896e-01	minor_base=G	minor_cov=1/0	new_cov=58/37	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=59/37
RA	341	.	NC_000913	2818838	0	G	A	consensus_score=558.7	frequency=1	major_base=A	major_cov=79/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/79
RA	342	.	NC_000913	2867455	0	G	A	consensus_score=362.6	frequency=1	major_base=A	major_cov=68/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/38
RA	343	.	NC_000913	2875647	0	T	C	bias_e_value=4640310	bias_p_value=0.999712	consensus_score=331.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.97609	major_base=C	major_cov=40/49	major_frequency=9.780e-01	minor_base=T	minor_cov=1/1	new_cov=40/49	polymorphism_frequency=9.780e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=41/50
RA	344	.	NC_000913	2926772	0	C	A	consensus_score=357.4	frequency=1	major_base=A	major_cov=61/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/42
RA	345	.	NC_000913	2990480	0	C	A	bias_e_value=0.00772301	bias_p_value=1.66385e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.2	fisher_strand_p_value=6.81652e-11	frequency=3.571e-01	ks_quality_p_value=1	major_base=C	major_cov=39/42	major_frequency=6.429e-01	minor_base=A	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=3.571e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=39/42	total_cov=84/42
RA	346	.	NC_000913	3028546	0	G	A	consensus_score=268.0	frequency=1	major_base=A	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	347	.	NC_000913	3032307	0	C	T	bias_e_value=0.00117593	bias_p_value=2.53343e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.2	fisher_strand_p_value=9.60781e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=26/58	major_frequency=7.500e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.500e-01	polymorphism_score=28.8	prediction=polymorphism	ref_cov=26/58	total_cov=54/58
RA	348	.	NC_000913	3050472	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=328.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/48	major_frequency=9.895e-01	minor_base=G	minor_cov=0/1	new_cov=46/48	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/49
RA	349	.	NC_000913	3054894	0	G	T	bias_e_value=5897.65	bias_p_value=0.00127059	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.0	fisher_strand_p_value=0.000127472	frequency=2.375e-01	ks_quality_p_value=1	major_base=G	major_cov=23/38	major_frequency=7.625e-01	minor_base=T	minor_cov=17/2	new_cov=17/2	polymorphism_frequency=2.375e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=23/38	total_cov=41/40
RA	350	.	NC_000913	3061916	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=281.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/34	major_frequency=9.773e-01	minor_base=C	minor_cov=1/1	new_cov=52/34	polymorphism_frequency=9.773e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/1	total_cov=53/35
RA	351	.	NC_000913	3065449	0	G	A	consensus_score=288.7	frequency=1	major_base=A	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	352	.	NC_000913	3065861	0	G	A	bias_e_value=2696500	bias_p_value=0.580935	consensus_score=408.5	fisher_strand_p_value=0.2389	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/57	major_frequency=9.821e-01	minor_base=C	minor_cov=2/0	new_cov=53/57	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	353	.	NC_000913	3089260	0	T	C	bias_e_value=3781240	bias_p_value=0.814633	consensus_score=254.9	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=0.984772	major_base=C	major_cov=31/37	major_frequency=9.855e-01	minor_base=A	minor_cov=1/0	new_cov=31/37	polymorphism_frequency=9.855e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	354	.	NC_000913	3090968	0	G	A	consensus_score=222.7	frequency=1	major_base=A	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	355	.	NC_000913	3104887	0	G	A	consensus_score=355.3	frequency=1	major_base=A	major_cov=45/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/53
RA	356	.	NC_000913	3120786	0	G	A	consensus_score=257.3	frequency=1	major_base=A	major_cov=41/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/30
RA	357	.	NC_000913	3121033	0	T	C	bias_e_value=3926510	bias_p_value=0.84593	consensus_score=353.4	fisher_strand_p_value=0.499072	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=52/45	major_frequency=9.798e-01	minor_base=A	minor_cov=2/0	new_cov=52/45	polymorphism_frequency=9.798e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	358	.	NC_000913	3127981	0	G	A	consensus_score=341.8	frequency=1	major_base=A	major_cov=80/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=80/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/29
RA	359	.	NC_000913	3130161	0	G	A	bias_e_value=3969410	bias_p_value=0.855173	consensus_score=363.4	fisher_strand_p_value=0.512634	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/62	major_frequency=9.815e-01	minor_base=G	minor_cov=0/2	new_cov=44/62	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=44/64
RA	360	.	NC_000913	3132077	0	G	A	consensus_score=306.9	frequency=1	major_base=A	major_cov=37/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/51
RA	361	.	NC_000913	3133175	0	G	A	consensus_score=288.3	frequency=1	major_base=A	major_cov=49/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/41
RA	362	.	NC_000913	3134263	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=465.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=72/62	major_frequency=9.926e-01	minor_base=C	minor_cov=1/0	new_cov=72/62	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/62
RA	363	.	NC_000913	3145944	0	G	A	consensus_score=383.8	frequency=1	major_base=A	major_cov=48/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/58
RA	364	.	NC_000913	3150316	0	G	A	bias_e_value=3879680	bias_p_value=0.835839	consensus_score=225.7	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/34	major_frequency=9.848e-01	minor_base=G	minor_cov=1/0	new_cov=31/34	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/34
RA	365	.	NC_000913	3162216	0	G	A	consensus_score=241.9	frequency=1	major_base=A	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	366	.	NC_000913	3176625	0	G	A	consensus_score=288.0	frequency=1	major_base=A	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	367	.	NC_000913	3179383	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=307.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/53	major_frequency=9.780e-01	minor_base=C	minor_cov=1/1	new_cov=36/53	polymorphism_frequency=9.780e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/54
RA	368	.	NC_000913	3186297	0	G	A	bias_e_value=2639770	bias_p_value=0.568714	consensus_score=81.0	fisher_strand_p_value=0.23693	frequency=1	ks_quality_p_value=0.972729	major_base=A	major_cov=8/20	major_frequency=9.032e-01	minor_base=G	minor_cov=2/1	new_cov=8/20	polymorphism_frequency=9.032e-01	polymorphism_score=2.2	prediction=consensus	ref_cov=2/1	total_cov=10/21
RA	369	.	NC_000913	3193351	0	G	A	consensus_score=295.3	frequency=1	major_base=A	major_cov=61/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/30
RA	370	.	NC_000913	3204617	0	G	A	consensus_score=333.2	frequency=1	major_base=A	major_cov=39/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/55
RA	371	.	NC_000913	3207549	0	G	.	consensus_score=515.3	frequency=1	major_base=.	major_cov=40/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/69
RA	372	.	NC_000913	3219128	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=401.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=98/26	major_frequency=9.920e-01	minor_base=C	minor_cov=1/0	new_cov=98/26	polymorphism_frequency=9.920e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=99/26
RA	373	.	NC_000913	3224895	0	C	T	consensus_score=265.9	frequency=1	major_base=T	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	374	.	NC_000913	3227339	0	C	T	consensus_score=327.4	frequency=1	major_base=T	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	375	.	NC_000913	3240423	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=250.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/37	major_frequency=9.861e-01	minor_base=C	minor_cov=0/1	new_cov=34/37	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=34/38
RA	376	.	NC_000913	3256157	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=291.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/55	major_frequency=9.888e-01	minor_base=G	minor_cov=0/1	new_cov=33/55	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/56
RA	377	.	NC_000913	3270497	0	C	T	consensus_score=179.8	frequency=1	major_base=T	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	378	.	NC_000913	3275902	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=244.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/25	major_frequency=9.861e-01	minor_base=G	minor_cov=1/0	new_cov=46/25	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/25
RA	379	.	NC_000913	3292312	0	C	T	consensus_score=300.0	frequency=1	major_base=T	major_cov=33/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/54
RA	380	.	NC_000913	3304647	0	T	C	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=262.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998479	major_base=C	major_cov=43/29	major_frequency=9.863e-01	minor_base=A	minor_cov=1/0	new_cov=43/29	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/29
RA	381	.	NC_000913	3329743	0	G	T	consensus_score=329.1	frequency=1	major_base=T	major_cov=56/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/34
RA	382	.	NC_000913	3388041	0	T	G	bias_e_value=3951390	bias_p_value=0.85129	consensus_score=356.5	fisher_strand_p_value=0.506873	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=41/54	major_frequency=9.794e-01	minor_base=T	minor_cov=0/2	new_cov=41/54	polymorphism_frequency=9.794e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=41/56
RA	383	.	NC_000913	3486688	0	T	G	bias_e_value=3776650	bias_p_value=0.813644	consensus_score=371.0	fisher_strand_p_value=0.455446	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=55/45	major_frequency=9.901e-01	minor_base=T	minor_cov=0/1	new_cov=55/45	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=55/46
RA	384	.	NC_000913	3506393	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=353.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=54/42	major_frequency=9.897e-01	minor_base=T	minor_cov=1/0	new_cov=54/42	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/42
RA	385	.	NC_000913	3524184	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=264.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/38	major_frequency=9.863e-01	minor_base=G	minor_cov=0/1	new_cov=34/38	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	386	.	NC_000913	3558291	0	C	T	bias_e_value=2475670	bias_p_value=0.533359	consensus_score=370.2	fisher_strand_p_value=0.207207	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/88	major_frequency=9.910e-01	minor_base=C	minor_cov=1/0	new_cov=22/88	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=23/88
RA	387	.	NC_000913	3559621	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=192.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/32	major_frequency=9.825e-01	minor_base=G	minor_cov=0/1	new_cov=24/32	polymorphism_frequency=9.825e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	388	.	NC_000913	3560119	0	A	G	consensus_score=367.9	frequency=1	major_base=G	major_cov=64/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/33
RA	389	.	NC_000913	3560455	1	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=404.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=55/53	major_frequency=9.818e-01	minor_base=A	minor_cov=1/1	new_cov=55/53	polymorphism_frequency=9.818e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=56/54
RA	390	.	NC_000913	3579050	0	G	A	bias_e_value=2159730	bias_p_value=0.465293	consensus_score=302.0	fisher_strand_p_value=0.166667	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/50	major_frequency=9.765e-01	minor_base=G	minor_cov=2/0	new_cov=33/50	polymorphism_frequency=9.765e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=2/0	total_cov=35/50
RA	391	.	NC_000913	3581316	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=282.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/35	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=45/35	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	392	.	NC_000913	3581850	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=434.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/66	major_frequency=9.917e-01	minor_base=G	minor_cov=0/1	new_cov=54/66	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/67
RA	393	.	NC_000913	3583969	0	G	A	bias_e_value=1988750	bias_p_value=0.428457	consensus_score=97.9	fisher_strand_p_value=0.147059	frequency=1	ks_quality_p_value=0.998219	major_base=A	major_cov=29/4	major_frequency=9.706e-01	minor_base=G	minor_cov=0/1	new_cov=29/4	polymorphism_frequency=9.706e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=29/5
RA	394	.	NC_000913	3585517	0	G	A	consensus_score=375.1	frequency=1	major_base=A	major_cov=49/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/58
RA	395	.	NC_000913	3587531	0	G	A	consensus_score=227.0	frequency=1	major_base=A	major_cov=41/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	396	.	NC_000913	3588787	0	G	A	consensus_score=294.3	frequency=1	major_base=A	major_cov=47/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/34
RA	397	.	NC_000913	3589956	0	G	A	consensus_score=216.8	frequency=1	major_base=A	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	398	.	NC_000913	3621090	0	C	T	consensus_score=91.4	frequency=1	major_base=T	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	399	.	NC_000913	3623537	0	G	A	bias_e_value=2.86303	bias_p_value=6.16813e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.6	fisher_strand_p_value=3.38906e-08	frequency=2.039e-01	ks_quality_p_value=1	major_base=G	major_cov=59/62	major_frequency=7.961e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.039e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=59/62	total_cov=59/96
RA	400	.	NC_000913	3647677	0	C	T	consensus_score=280.5	frequency=1	major_base=T	major_cov=48/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/39
RA	401	.	NC_000913	3707883	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=435.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=78/53	major_frequency=9.924e-01	minor_base=C	minor_cov=1/0	new_cov=78/53	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/53
RA	402	.	NC_000913	3707947	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=464.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=72/58	major_frequency=9.924e-01	minor_base=C	minor_cov=1/0	new_cov=72/58	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=73/58
RA	403	.	NC_000913	3725176	0	T	G	consensus_score=277.4	frequency=1	major_base=G	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	404	.	NC_000913	3741871	0	G	T	bias_e_value=0.0185433	bias_p_value=3.99497e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.6	fisher_strand_p_value=1.70035e-10	frequency=2.650e-01	ks_quality_p_value=1	major_base=G	major_cov=53/33	major_frequency=7.350e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.650e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=53/33	total_cov=53/64
RA	405	.	NC_000913	3791179	0	G	T	bias_e_value=0.543663	bias_p_value=1.17127e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.6	fisher_strand_p_value=5.87002e-09	frequency=2.970e-01	ks_quality_p_value=1	major_base=G	major_cov=40/31	major_frequency=7.030e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.970e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=40/31	total_cov=40/61
RA	406	.	NC_000913	3815883	1	.	C	bias_e_value=711017	bias_p_value=0.153182	consensus_score=400.3	fisher_strand_p_value=0.0352531	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=39/66	major_frequency=9.459e-01	minor_base=.	minor_cov=5/1	new_cov=39/66	polymorphism_frequency=9.459e-01	polymorphism_score=13.2	prediction=consensus	ref_cov=5/1	total_cov=44/67
RA	407	.	NC_000913	3827026	0	C	T	consensus_score=289.1	frequency=1	major_base=T	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	408	.	NC_000913	3896780	0	C	A	bias_e_value=0.000939659	bias_p_value=2.02441e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.4	fisher_strand_p_value=7.61011e-12	frequency=2.443e-01	ks_quality_p_value=1	major_base=C	major_cov=36/63	major_frequency=7.557e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.443e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=36/63	total_cov=68/63
RA	409	.	NC_000913	3911533	0	C	A	bias_e_value=0.00365108	bias_p_value=7.86592e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.8	fisher_strand_p_value=3.12267e-11	frequency=3.333e-01	ks_quality_p_value=1	major_base=C	major_cov=40/46	major_frequency=6.667e-01	minor_base=A	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=3.333e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=40/46	total_cov=83/46
RA	410	.	NC_000913	3927292	0	T	C	consensus_score=476.7	frequency=1	major_base=C	major_cov=46/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/79
RA	411	.	NC_000913	3933287	0	G	A	consensus_score=418.1	frequency=1	major_base=A	major_cov=52/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/63
RA	412	.	NC_000913	3937909	0	G	A	consensus_score=312.0	frequency=1	major_base=A	major_cov=40/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/53
RA	413	.	NC_000913	3937997	0	G	A	consensus_score=288.6	frequency=1	major_base=A	major_cov=39/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/45
RA	414	.	NC_000913	3938441	0	C	.	bias_e_value=3300090	bias_p_value=0.710974	consensus_score=447.3	fisher_strand_p_value=0.343894	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=45/52	major_frequency=9.604e-01	minor_base=C	minor_cov=3/1	new_cov=45/52	polymorphism_frequency=9.604e-01	polymorphism_score=8.2	prediction=consensus	ref_cov=3/1	total_cov=49/53
RA	415	.	NC_000913	3941874	0	C	T	bias_e_value=3872630	bias_p_value=0.834322	consensus_score=236.7	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/41	major_frequency=9.885e-01	minor_base=G	minor_cov=0/1	new_cov=45/41	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=45/43
RA	416	.	NC_000913	3946246	0	G	A	bias_e_value=3866720	bias_p_value=0.833047	consensus_score=148.6	fisher_strand_p_value=0.481013	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/37	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=41/37	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=41/38
RA	417	.	NC_000913	3950099	0	C	T	consensus_score=485.4	frequency=1	major_base=T	major_cov=94/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=94/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=94/39
RA	418	.	NC_000913	3956003	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=211.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/23	major_frequency=9.848e-01	minor_base=C	minor_cov=1/0	new_cov=42/23	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/23
RA	419	.	NC_000913	4033318	0	C	T	consensus_score=275.9	frequency=1	major_base=T	major_cov=24/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/59
RA	420	.	NC_000913	4040623	0	G	A	bias_e_value=2706140	bias_p_value=0.583011	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.9	fisher_strand_p_value=0.428076	frequency=7.882e-01	ks_quality_p_value=0.561473	major_base=A	major_cov=41/26	major_frequency=7.882e-01	minor_base=G	minor_cov=9/9	new_cov=41/26	polymorphism_frequency=7.882e-01	polymorphism_score=43.9	prediction=polymorphism	ref_cov=9/9	total_cov=50/35
RA	421	.	NC_000913	4074572	0	C	A	bias_e_value=42.3487	bias_p_value=9.12362e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.2	fisher_strand_p_value=5.94963e-07	frequency=3.165e-01	ks_quality_p_value=1	major_base=C	major_cov=25/29	major_frequency=6.835e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.165e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=25/29	total_cov=50/31
RA	422	.	NC_000913	4084932	0	G	T	consensus_score=293.2	frequency=1	major_base=T	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	423	.	NC_000913	4096422	0	C	A	bias_e_value=209.349	bias_p_value=4.51022e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.8	fisher_strand_p_value=3.31196e-06	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=32/40	major_frequency=7.500e-01	minor_base=A	minor_cov=23/1	new_cov=23/1	polymorphism_frequency=2.500e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=32/40	total_cov=55/41
RA	424	.	NC_000913	4139298	0	G	A	consensus_score=311.8	frequency=1	major_base=A	major_cov=40/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/51
RA	425	.	NC_000913	4160157	0	G	A	consensus_score=359.7	frequency=1	major_base=A	major_cov=62/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/46
RA	426	.	NC_000913	4166856	0	G	A	bias_e_value=2695830	bias_p_value=0.580792	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.3	fisher_strand_p_value=0.484078	frequency=5.122e-01	ks_quality_p_value=0.493309	major_base=A	major_cov=7/14	major_frequency=5.122e-01	minor_base=G	minor_cov=4/16	new_cov=7/14	polymorphism_frequency=5.122e-01	polymorphism_score=59.8	prediction=polymorphism	ref_cov=4/16	total_cov=11/30
RA	427	.	NC_000913	4171728	0	C	T	bias_e_value=4391110	bias_p_value=0.946022	consensus_score=96.2	fisher_strand_p_value=0.689968	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/24	major_frequency=8.889e-01	minor_base=C	minor_cov=3/4	new_cov=32/24	polymorphism_frequency=8.889e-01	polymorphism_score=5.0	prediction=consensus	ref_cov=3/4	total_cov=35/28
RA	428	.	NC_000913	4171781	0	A	G	bias_e_value=2566810	bias_p_value=0.552994	consensus_score=118.5	fisher_strand_p_value=0.219925	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=30/25	major_frequency=9.649e-01	minor_base=T	minor_cov=0/2	new_cov=30/25	polymorphism_frequency=9.649e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/27
RA	429	.	NC_000913	4175827	0	C	T	consensus_score=283.6	frequency=1	major_base=T	major_cov=51/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/31
RA	430	.	NC_000913	4178883	0	C	T	bias_e_value=3447870	bias_p_value=0.742811	consensus_score=270.9	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/50	major_frequency=9.875e-01	minor_base=C	minor_cov=1/0	new_cov=29/50	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/50
RA	431	.	NC_000913	4179001	0	C	T	bias_e_value=3839090	bias_p_value=0.827096	consensus_score=263.2	fisher_strand_p_value=0.472973	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/39	major_frequency=9.865e-01	minor_base=C	minor_cov=1/0	new_cov=34/39	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/39
RA	432	.	NC_000913	4185777	0	C	T	consensus_score=307.2	frequency=1	major_base=T	major_cov=40/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/50
RA	433	.	NC_000913	4193177	0	C	T	consensus_score=217.0	frequency=1	major_base=T	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	434	.	NC_000913	4193820	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=112.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998414	major_base=T	major_cov=11/24	major_frequency=9.722e-01	minor_base=G	minor_cov=0/1	new_cov=11/24	polymorphism_frequency=9.722e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=11/25
RA	435	.	NC_000913	4219752	0	C	T	consensus_score=345.1	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	436	.	NC_000913	4222743	0	C	T	consensus_score=436.4	frequency=1	major_base=T	major_cov=50/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/79
RA	437	.	NC_000913	4223638	0	T	C	bias_e_value=3914800	bias_p_value=0.843407	consensus_score=335.5	fisher_strand_p_value=0.495461	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=44/46	major_frequency=9.783e-01	minor_base=T	minor_cov=0/2	new_cov=44/46	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=45/48
RA	438	.	NC_000913	4224483	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=168.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/32	major_frequency=9.815e-01	minor_base=G	minor_cov=0/1	new_cov=21/32	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=22/33
RA	439	.	NC_000913	4234479	0	C	T	consensus_score=313.9	frequency=1	major_base=T	major_cov=52/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/33
RA	440	.	NC_000913	4249684	0	C	T	consensus_score=271.8	frequency=1	major_base=T	major_cov=42/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/35
RA	441	.	NC_000913	4265668	0	C	T	bias_e_value=3823340	bias_p_value=0.823702	consensus_score=394.0	fisher_strand_p_value=0.468468	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=59/51	major_frequency=9.910e-01	minor_base=G	minor_cov=0/1	new_cov=59/51	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/52
RA	442	.	NC_000913	4269449	0	C	T	consensus_score=373.0	frequency=1	major_base=T	major_cov=39/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/67
RA	443	.	NC_000913	4271130	0	C	T	consensus_score=328.0	frequency=1	major_base=T	major_cov=33/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/65
RA	444	.	NC_000913	4278488	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=331.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/64	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=33/64	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/65
RA	445	.	NC_000913	4282536	0	C	T	consensus_score=552.8	frequency=1	major_base=T	major_cov=62/97	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/97	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/97
RA	446	.	NC_000913	4284077	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=225.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/37	major_frequency=9.851e-01	minor_base=G	minor_cov=0/1	new_cov=29/37	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	447	.	NC_000913	4286033	0	C	T	consensus_score=203.3	frequency=1	major_base=T	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	448	.	NC_000913	4296300	0	C	T	bias_e_value=3304910	bias_p_value=0.712011	consensus_score=100.0	fisher_strand_p_value=0.344867	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/18	major_frequency=8.837e-01	minor_base=C	minor_cov=1/4	new_cov=20/18	polymorphism_frequency=8.837e-01	polymorphism_score=2.8	prediction=consensus	ref_cov=1/4	total_cov=21/22
RA	449	.	NC_000913	4296380	1	.	C	bias_e_value=4178720	bias_p_value=0.900265	consensus_score=236.4	fisher_strand_p_value=0.588038	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/33	major_frequency=9.610e-01	minor_base=T	minor_cov=1/2	new_cov=41/33	polymorphism_frequency=9.610e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=3/0	total_cov=45/35
RA	450	.	NC_000913	4296380	2	.	G	bias_e_value=2629410	bias_p_value=0.566481	consensus_score=261.1	fisher_strand_p_value=0.252373	frequency=1	ks_quality_p_value=0.907191	major_base=G	major_cov=42/35	major_frequency=9.625e-01	minor_base=.	minor_cov=3/0	new_cov=42/35	polymorphism_frequency=9.625e-01	polymorphism_score=4.4	prediction=consensus	ref_cov=3/0	total_cov=45/35
RA	451	.	NC_000913	4297469	0	C	T	consensus_score=254.9	frequency=1	major_base=T	major_cov=32/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/46
RA	452	.	NC_000913	4298199	0	C	T	consensus_score=212.4	frequency=1	major_base=T	major_cov=18/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/50
RA	453	.	NC_000913	4301071	0	C	T	consensus_score=247.0	frequency=1	major_base=T	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	454	.	NC_000913	4303755	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=222.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/35	major_frequency=9.859e-01	minor_base=G	minor_cov=0/1	new_cov=35/35	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	455	.	NC_000913	4311337	0	C	T	consensus_score=291.9	frequency=1	major_base=T	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	456	.	NC_000913	4320079	0	C	T	consensus_score=176.0	frequency=1	major_base=T	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	457	.	NC_000913	4320785	0	C	T	bias_e_value=3326220	bias_p_value=0.716604	consensus_score=226.9	fisher_strand_p_value=0.349206	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/21	major_frequency=9.841e-01	minor_base=G	minor_cov=0/1	new_cov=41/21	polymorphism_frequency=9.841e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=41/22
RA	458	.	NC_000913	4322605	0	C	T	consensus_score=182.8	frequency=1	major_base=T	major_cov=17/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/37
RA	459	.	NC_000913	4325644	0	C	T	consensus_score=286.7	frequency=1	major_base=T	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	460	.	NC_000913	4325837	0	C	T	bias_e_value=3486320	bias_p_value=0.751095	consensus_score=145.6	fisher_strand_p_value=0.383545	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/29	major_frequency=8.889e-01	minor_base=C	minor_cov=4/2	new_cov=19/29	polymorphism_frequency=8.889e-01	polymorphism_score=7.7	prediction=consensus	ref_cov=4/2	total_cov=23/31
RA	461	.	NC_000913	4332310	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=245.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/43	major_frequency=9.870e-01	minor_base=G	minor_cov=0/1	new_cov=33/43	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/44
RA	462	.	NC_000913	4337864	0	C	T	consensus_score=356.9	frequency=1	major_base=T	major_cov=55/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/47
RA	463	.	NC_000913	4342825	0	C	T	consensus_score=305.3	frequency=1	major_base=T	major_cov=39/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/52
RA	464	.	NC_000913	4349259	0	C	T	consensus_score=552.4	frequency=1	major_base=T	major_cov=67/85	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/85	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/85
RA	465	.	NC_000913	4351519	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=335.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/59	major_frequency=9.902e-01	minor_base=G	minor_cov=0/1	new_cov=42/59	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/60
RA	466	.	NC_000913	4351590	0	C	T	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=285.5	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/52	major_frequency=9.890e-01	minor_base=G	minor_cov=1/0	new_cov=38/52	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/52
RA	467	.	NC_000913	4359909	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=371.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/53	major_frequency=9.906e-01	minor_base=C	minor_cov=0/1	new_cov=52/53	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=52/54
RA	468	.	NC_000913	4360965	0	C	A	bias_e_value=1.5253e-08	bias_p_value=3.28612e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=320.5	fisher_strand_p_value=8.65081e-17	frequency=2.756e-01	ks_quality_p_value=1	major_base=C	major_cov=36/77	major_frequency=7.244e-01	minor_base=A	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=2.756e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=36/77	total_cov=79/77
RA	469	.	NC_000913	4364798	0	C	T	bias_e_value=3491080	bias_p_value=0.75212	consensus_score=320.8	fisher_strand_p_value=0.384615	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/34	major_frequency=9.890e-01	minor_base=G	minor_cov=0/1	new_cov=56/34	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=56/36
RA	470	.	NC_000913	4366668	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=386.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=59/54	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=59/54	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=60/54
RA	471	.	NC_000913	4371401	0	C	T	bias_e_value=3865220	bias_p_value=0.832726	consensus_score=323.8	fisher_strand_p_value=0.483516	frequency=1	ks_quality_p_value=0.993914	major_base=T	major_cov=43/47	major_frequency=9.890e-01	minor_base=C	minor_cov=1/0	new_cov=43/47	polymorphism_frequency=9.890e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=44/47
RA	472	.	NC_000913	4373421	0	C	T	bias_e_value=3484690	bias_p_value=0.750743	consensus_score=387.6	fisher_strand_p_value=0.383178	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=66/40	major_frequency=9.907e-01	minor_base=G	minor_cov=0/1	new_cov=66/40	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/41
RA	473	.	NC_000913	4380469	0	C	T	consensus_score=204.8	frequency=1	major_base=T	major_cov=28/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/31
RA	474	.	NC_000913	4388120	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=226.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/37	major_frequency=9.846e-01	minor_base=C	minor_cov=0/1	new_cov=27/37	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=27/38
RA	475	.	NC_000913	4389838	0	C	T	consensus_score=252.8	frequency=1	major_base=T	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	476	.	NC_000913	4401607	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=253.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/43	major_frequency=9.861e-01	minor_base=C	minor_cov=0/1	new_cov=28/43	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=28/44
RA	477	.	NC_000913	4403010	0	C	T	consensus_score=239.0	frequency=1	major_base=T	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	478	.	NC_000913	4407045	0	C	T	consensus_score=263.5	frequency=1	major_base=T	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	479	.	NC_000913	4414625	0	C	T	consensus_score=216.7	frequency=1	major_base=T	major_cov=25/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/38
RA	480	.	NC_000913	4418862	0	C	T	consensus_score=233.1	frequency=1	major_base=T	major_cov=28/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/46
RA	481	.	NC_000913	4426929	0	C	T	consensus_score=425.4	frequency=1	major_base=T	major_cov=49/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/72
RA	482	.	NC_000913	4433459	0	C	T	consensus_score=353.4	frequency=1	major_base=T	major_cov=43/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/57
RA	483	.	NC_000913	4435124	0	C	T	bias_e_value=3856010	bias_p_value=0.830742	consensus_score=381.7	fisher_strand_p_value=0.477876	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=59/53	major_frequency=9.912e-01	minor_base=G	minor_cov=0/1	new_cov=59/53	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/54
RA	484	.	NC_000913	4435750	0	C	T	consensus_score=441.0	frequency=1	major_base=T	major_cov=66/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/55
RA	485	.	NC_000913	4451280	0	C	T	consensus_score=274.4	frequency=1	major_base=T	major_cov=52/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/23
RA	486	.	NC_000913	4457392	0	C	T	consensus_score=318.8	frequency=1	major_base=T	major_cov=49/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/39
RA	487	.	NC_000913	4482901	0	C	T	consensus_score=294.7	frequency=1	major_base=T	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	488	.	NC_000913	4486869	0	T	A	consensus_score=349.5	frequency=1	major_base=A	major_cov=39/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/59
RA	489	.	NC_000913	4487022	0	C	T	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=310.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997898	major_base=T	major_cov=35/57	major_frequency=9.892e-01	minor_base=G	minor_cov=0/1	new_cov=35/57	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/58
RA	490	.	NC_000913	4489775	0	C	T	bias_e_value=3908410	bias_p_value=0.84203	consensus_score=256.8	fisher_strand_p_value=0.493506	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/37	major_frequency=9.870e-01	minor_base=C	minor_cov=0/1	new_cov=39/37	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=39/38
RA	491	.	NC_000913	4494499	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=506.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998588	major_base=T	major_cov=71/79	major_frequency=9.934e-01	minor_base=G	minor_cov=0/1	new_cov=71/79	polymorphism_frequency=9.934e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/80
RA	492	.	NC_000913	4501500	0	C	T	bias_e_value=3744740	bias_p_value=0.806769	consensus_score=322.5	fisher_strand_p_value=0.446809	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/41	major_frequency=9.894e-01	minor_base=G	minor_cov=0/1	new_cov=52/41	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/42
RA	493	.	NC_000913	4510238	0	T	G	bias_e_value=306882	bias_p_value=0.0661149	consensus_score=412.4	fisher_strand_p_value=0.0122358	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=72/48	major_frequency=9.600e-01	minor_base=T	minor_cov=0/5	new_cov=72/48	polymorphism_frequency=9.600e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/5	total_cov=72/53
RA	494	.	NC_000913	4517355	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=215.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/34	major_frequency=9.853e-01	minor_base=G	minor_cov=0/1	new_cov=33/34	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	495	.	NC_000913	4524401	0	C	T	consensus_score=420.5	frequency=1	major_base=T	major_cov=56/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/63
RA	496	.	NC_000913	4524596	0	C	T	bias_e_value=3380370	bias_p_value=0.728269	consensus_score=280.2	fisher_strand_p_value=0.360465	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/55	major_frequency=9.884e-01	minor_base=G	minor_cov=1/0	new_cov=30/55	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/55
RA	497	.	NC_000913	4529039	0	C	T	consensus_score=386.8	frequency=1	major_base=T	major_cov=57/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/54
RA	498	.	NC_000913	4530797	0	C	T	bias_e_value=3680820	bias_p_value=0.792998	consensus_score=316.3	fisher_strand_p_value=0.430108	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/53	major_frequency=9.892e-01	minor_base=C	minor_cov=1/0	new_cov=39/53	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=40/53
RA	499	.	NC_000913	4541261	0	C	T	consensus_score=478.2	frequency=1	major_base=T	major_cov=68/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/67
RA	500	.	NC_000913	4553671	0	C	T	consensus_score=256.2	frequency=1	major_base=T	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	501	.	NC_000913	4564385	0	C	T	consensus_score=286.5	frequency=1	major_base=T	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	502	.	NC_000913	4570550	0	C	T	consensus_score=279.6	frequency=1	major_base=T	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	503	.	NC_000913	4571280	0	C	T	consensus_score=286.7	frequency=1	major_base=T	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	504	.	NC_000913	4585673	0	C	T	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=185.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997743	major_base=T	major_cov=28/31	major_frequency=9.833e-01	minor_base=G	minor_cov=0/1	new_cov=28/31	polymorphism_frequency=9.833e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	505	.	NC_000913	4587365	0	C	T	consensus_score=330.6	frequency=1	major_base=T	major_cov=43/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/50
RA	506	.	NC_000913	4604517	0	C	T	bias_e_value=3841770	bias_p_value=0.827673	consensus_score=343.8	fisher_strand_p_value=0.475248	frequency=1	ks_quality_p_value=0.996837	major_base=T	major_cov=53/47	major_frequency=9.901e-01	minor_base=G	minor_cov=0/1	new_cov=53/47	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	507	.	NC_000913	4630295	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=282.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999684	major_base=T	major_cov=56/23	major_frequency=9.875e-01	minor_base=C	minor_cov=1/0	new_cov=56/23	polymorphism_frequency=9.875e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=1/0	total_cov=57/23
RA	508	.	NC_000913	4636925	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=311.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/41	major_frequency=9.880e-01	minor_base=T	minor_cov=0/1	new_cov=41/41	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	509	.	NC_000913	4638058	0	C	T	consensus_score=202.5	frequency=1	major_base=T	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	510	.	NC_000913	4638240	0	G	A	consensus_score=297.1	frequency=1	major_base=A	major_cov=51/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/40
MC	511	.	NC_000913	257908	258683	766	0	left_inside_cov=1	left_outside_cov=133	right_inside_cov=2	right_outside_cov=134
MC	512	.	NC_000913	275509	315228	0	0	left_inside_cov=0	left_outside_cov=78	right_inside_cov=0	right_outside_cov=214
MC	513	.	NC_000913	315482	372748	1000	0	left_inside_cov=26	left_outside_cov=29	right_inside_cov=0	right_outside_cov=78
MC	514	.	NC_000913	565829	577187	0	0	left_inside_cov=0	left_outside_cov=92	right_inside_cov=0	right_outside_cov=137
MC	515	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=80	right_inside_cov=1	right_outside_cov=81
MC	516	.	NC_000913	3423853	3424486	379	247	left_inside_cov=26	left_outside_cov=27	right_inside_cov=26	right_outside_cov=30
JC	517	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=68	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=297	max_left_minus=297	max_left_plus=226	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=144	max_min_right_minus=139	max_min_right_plus=144	max_pos_hash_score=588	max_right=284	max_right_minus=275	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.42	new_junction_read_count=130	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=126
JC	518	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=57	coverage_plus=69	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=291	max_left_minus=291	max_left_plus=287	max_min_left=143	max_min_left_minus=91	max_min_left_plus=143	max_min_right=146	max_min_right_minus=140	max_min_right_plus=146	max_pos_hash_score=572	max_right=287	max_right_minus=287	max_right_plus=279	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.49	new_junction_read_count=132	polymorphism_frequency=9.963e-01	pos_hash_score=77	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=126
JC	519	.	NC_000913	273955	1	NC_000913	565828	-1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__273955__1__NC_000913__565828__-1__0____300__300__1__0	max_left=294	max_left_minus=284	max_left_plus=294	max_min_left=146	max_min_left_minus=146	max_min_left_plus=136	max_min_right=140	max_min_right_minus=140	max_min_right_plus=139	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=296	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.00	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90
JC	520	.	NC_000913	275149	-1	NC_000913	577188	1	0	alignment_overlap=0	coverage_minus=82	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__275149__-1__NC_000913__577188__1__0____300__300__1__0	max_left=293	max_left_minus=282	max_left_plus=293	max_min_left=147	max_min_left_minus=116	max_min_left_plus=147	max_min_right=146	max_min_right_minus=146	max_min_right_plus=145	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=276	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.50	new_junction_read_count=137	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=134
JC	521	.	NC_000913	275508	-1	NC_000913	372749	1	0	alignment_overlap=10	coverage_minus=35	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=284	key=NC_000913__275508__-1__NC_000913__372739__1__10____300__300__0__0	max_left=286	max_left_minus=276	max_left_plus=286	max_min_left=138	max_min_left_minus=117	max_min_left_plus=138	max_min_right=132	max_min_right_minus=125	max_min_right_plus=132	max_pos_hash_score=568	max_right=283	max_right_minus=283	max_right_plus=262	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.88	new_junction_read_count=78	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	522	.	NC_000913	315229	1	NC_000913	1199872	-1	-2	alignment_overlap=-2	coverage_minus=59	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__315229__1__NC_000913__1199872__-1__-2__TC__300__300__0__0	max_left=292	max_left_minus=276	max_left_plus=292	max_min_left=143	max_min_left_minus=138	max_min_left_plus=143	max_min_right=149	max_min_right_minus=149	max_min_right_plus=142	max_pos_hash_score=584	max_right=292	max_right_minus=290	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=TC
JC	523	.	NC_000913	315229	1	NC_000913	2406176	1	-3	alignment_overlap=-3	coverage_minus=47	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__315229__1__NC_000913__2406176__1__-3__TCA__300__300__0__0	max_left=292	max_left_minus=285	max_left_plus=292	max_min_left=148	max_min_left_minus=148	max_min_left_plus=147	max_min_right=143	max_min_right_minus=143	max_min_right_plus=136	max_pos_hash_score=582	max_right=295	max_right_minus=295	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=108	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104	unique_read_sequence=TCA
JC	524	.	NC_000913	382590	-1	NC_000913	884776	1	0	alignment_overlap=0	coverage_minus=56	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__382590__-1__NC_000913__884776__1__0____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=270	max_min_left=149	max_min_left_minus=149	max_min_left_plus=147	max_min_right=148	max_min_right_minus=148	max_min_right_plus=148	max_pos_hash_score=588	max_right=286	max_right_minus=286	max_right_plus=283	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.09	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=98
JC	525	.	NC_000913	607765	1	NC_000913	3722075	-1	0	alignment_overlap=1	coverage_minus=61	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__607764__1__NC_000913__3722075__-1__1____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=293	max_min_left=139	max_min_left_minus=128	max_min_left_plus=139	max_min_right=145	max_min_right_minus=145	max_min_right_plus=132	max_pos_hash_score=586	max_right=298	max_right_minus=297	max_right_plus=298	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=101	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=101
JC	526	.	NC_000913	607767	-1	NC_000913	3720633	1	0	alignment_overlap=2	coverage_minus=50	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__607769__-1__NC_000913__3720633__1__2____300__300__0__0	max_left=295	max_left_minus=291	max_left_plus=295	max_min_left=138	max_min_left_minus=138	max_min_left_plus=131	max_min_right=147	max_min_right_minus=147	max_min_right_plus=145	max_pos_hash_score=584	max_right=296	max_right_minus=296	max_right_plus=287	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.12	new_junction_read_count=102	polymorphism_frequency=9.902e-01	pos_hash_score=58	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=101
JC	527	.	NC_000913	696469	-1	NC_000913	696802	1	-6	alignment_overlap=-6	coverage_minus=3	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.305e-01	junction_possible_overlap_registers=288	key=NC_000913__696469__-1__NC_000913__696802__1__-6__TAGAAT__300__300__0__0	max_left=279	max_left_minus=233	max_left_plus=279	max_min_left=130	max_min_left_minus=0	max_min_left_plus=130	max_min_right=129	max_min_right_minus=129	max_min_right_plus=129	max_pos_hash_score=576	max_right=162	max_right_minus=129	max_right_plus=162	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.305e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=TAGAAT
JC	528	.	NC_000913	696506	-1	NC_000913	697057	1	-45	alignment_overlap=-45	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.846e-02	junction_possible_overlap_registers=249	key=NC_000913__696506__-1__NC_000913__697057__1__-45__AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT__300__300__0__0	max_left=212	max_left_minus=71	max_left_plus=212	max_min_left=71	max_min_left_minus=71	max_min_left_plus=71	max_min_right=43	max_min_right_minus=0	max_min_right_plus=43	max_pos_hash_score=498	max_right=140	max_right_minus=140	max_right_plus=140	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=8.846e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT
JC	529	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=5	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.916e-01	junction_possible_overlap_registers=216	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=116	max_left_minus=116	max_left_plus=116	max_min_left=16	max_min_left_minus=10	max_min_left_plus=16	max_min_right=62	max_min_right_minus=62	max_min_right_plus=62	max_pos_hash_score=432	max_right=173	max_right_minus=173	max_right_plus=173	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.15	new_junction_read_count=10	polymorphism_frequency=1.916e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=10
JC	530	.	NC_000913	732408	1	NC_000913	3621836	-1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.404e-02	junction_possible_overlap_registers=282	key=NC_000913__732408__1__NC_000913__3621848__-1__12____300__300__0__1	max_left=206	max_left_minus=14	max_left_plus=206	max_min_left=14	max_min_left_minus=14	max_min_left_plus=0	max_min_right=140	max_min_right_minus=0	max_min_right_plus=140	max_pos_hash_score=564	max_right=272	max_right_minus=272	max_right_plus=140	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.404e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	531	.	NC_000913	781222	-1	NC_000913	781653	1	0	alignment_overlap=76	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.346e-01	junction_possible_overlap_registers=218	key=NC_000913__781222__-1__NC_000913__781577__1__76____300__300__0__0	max_left=210	max_left_minus=210	max_left_plus=148	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=91	max_min_right_minus=91	max_min_right_plus=91	max_pos_hash_score=436	max_right=99	max_right_minus=91	max_right_plus=99	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.10	new_junction_read_count=7	polymorphism_frequency=1.346e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=7
JC	532	.	NC_000913	781369	1	NC_000913	2521006	-1	-2	alignment_overlap=-2	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=1.091e-01	junction_possible_overlap_registers=292	key=NC_000913__781369__1__NC_000913__2521006__-1__-2__GG__300__300__0__0	max_left=166	max_left_minus=166	max_left_plus=114	max_min_left=18	max_min_left_minus=18	max_min_left_plus=0	max_min_right=46	max_min_right_minus=43	max_min_right_plus=46	max_pos_hash_score=584	max_right=278	max_right_minus=278	max_right_plus=46	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=1.091e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GG
JC	533	.	NC_000913	781369	1	NC_000913	2521127	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=1.003e-01	junction_possible_overlap_registers=293	key=NC_000913__781369__1__NC_000913__2521127__-1__-1__G__300__300__0__0	max_left=166	max_left_minus=166	max_left_plus=114	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=47	max_min_right_minus=44	max_min_right_plus=47	max_pos_hash_score=586	max_right=47	max_right_minus=44	max_right_plus=47	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=1.003e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=G
JC	534	.	NC_000913	781518	-1	NC_000913	781785	1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.996e-02	junction_possible_overlap_registers=289	key=NC_000913__781518__-1__NC_000913__781780__1__5____300__300__0__0	max_left=253	max_left_minus=253	max_left_plus=129	max_min_left=129	max_min_left_minus=37	max_min_left_plus=129	max_min_right=141	max_min_right_minus=141	max_min_right_plus=0	max_pos_hash_score=578	max_right=166	max_right_minus=141	max_right_plus=166	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.996e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=5	side_1_possible_overlap_registers=294	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=5
JC	535	.	NC_000913	781544	-1	NC_000913	781811	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.532e-02	junction_possible_overlap_registers=292	key=NC_000913__781544__-1__NC_000913__781809__1__2____300__300__0__0	max_left=282	max_left_minus=282	max_left_plus=158	max_min_left=109	max_min_left_minus=0	max_min_left_plus=109	max_min_right=140	max_min_right_minus=78	max_min_right_plus=140	max_pos_hash_score=584	max_right=189	max_right_minus=78	max_right_plus=189	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.532e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=4
JC	536	.	NC_000913	805862	-1	NC_000913	805955	1	0	alignment_overlap=7	coverage_minus=5	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=8.147e-02	junction_possible_overlap_registers=287	key=NC_000913__805862__-1__NC_000913__805948__1__7____300__300__0__0	max_left=267	max_left_minus=267	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=135	max_min_right_minus=135	max_min_right_plus=115	max_pos_hash_score=574	max_right=135	max_right_minus=135	max_right_plus=115	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=8.147e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=7	side_1_possible_overlap_registers=294	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=6
JC	537	.	NC_000913	884780	-1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=26	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__884780__-1__NC_000913__1469240__-1__0____300__300__0__1	max_left=295	max_left_minus=280	max_left_plus=295	max_min_left=147	max_min_left_minus=147	max_min_left_plus=129	max_min_right=148	max_min_right_minus=148	max_min_right_plus=143	max_pos_hash_score=588	max_right=297	max_right_minus=280	max_right_plus=297	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.82	new_junction_read_count=75	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=75
JC	538	.	NC_000913	1094245	1	NC_000913	1199869	1	0	alignment_overlap=0	coverage_minus=57	coverage_plus=32	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1094245__1__NC_000913__1199869__1__0____300__300__1__0	max_left=296	max_left_minus=296	max_left_plus=272	max_min_left=148	max_min_left_minus=148	max_min_left_plus=130	max_min_right=149	max_min_right_minus=140	max_min_right_plus=149	max_pos_hash_score=588	max_right=299	max_right_minus=290	max_right_plus=299	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.00	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=89
JC	539	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=19	coverage_plus=15	flanking_left=300	flanking_right=300	frequency=3.451e-01	junction_possible_overlap_registers=278	key=NC_000913__1207790__1__NC_000913__1209603__1__16____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=211	max_min_left=133	max_min_left_minus=133	max_min_left_plus=93	max_min_right=135	max_min_right_minus=126	max_min_right_plus=135	max_pos_hash_score=556	max_right=280	max_right_minus=250	max_right_plus=280	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.39	new_junction_read_count=34	polymorphism_frequency=3.451e-01	pos_hash_score=29	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=34
JC	540	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=15	coverage_plus=19	flanking_left=300	flanking_right=300	frequency=3.451e-01	junction_possible_overlap_registers=278	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____300__300__0__0	max_left=282	max_left_minus=282	max_left_plus=282	max_min_left=139	max_min_left_minus=139	max_min_left_plus=126	max_min_right=137	max_min_right_minus=137	max_min_right_plus=117	max_pos_hash_score=556	max_right=252	max_right_minus=252	max_right_plus=230	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.41	new_junction_read_count=35	polymorphism_frequency=3.451e-01	pos_hash_score=25	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=34
JC	541	.	NC_000913	1229388	1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=74	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1229388__1__NC_000913__1467910__1__0____300__300__0__1	max_left=293	max_left_minus=274	max_left_plus=293	max_min_left=146	max_min_left_minus=130	max_min_left_plus=146	max_min_right=149	max_min_right_minus=146	max_min_right_plus=149	max_pos_hash_score=588	max_right=293	max_right_minus=280	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.30	new_junction_read_count=119	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=118
JC	542	.	NC_000913	1229392	-1	NC_000913	2070271	-1	0	alignment_overlap=0	coverage_minus=31	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1229392__-1__NC_000913__2070271__-1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=293	max_min_left=137	max_min_left_minus=135	max_min_left_plus=137	max_min_right=143	max_min_right_minus=142	max_min_right_plus=143	max_pos_hash_score=588	max_right=279	max_right_minus=279	max_right_plus=270	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.92	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=83
JC	543	.	NC_000913	1287262	-1	NC_000913	1287382	1	0	alignment_overlap=21	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.131e-02	junction_possible_overlap_registers=273	key=NC_000913__1287262__-1__NC_000913__1287361__1__21____300__300__0__0	max_left=121	max_left_minus=121	max_left_plus=121	max_min_left=64	max_min_left_minus=64	max_min_left_plus=0	max_min_right=93	max_min_right_minus=93	max_min_right_plus=93	max_pos_hash_score=546	max_right=163	max_right_minus=163	max_right_plus=93	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.131e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=21	side_1_possible_overlap_registers=294	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.53	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=3
JC	544	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=65	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=284	max_left_plus=294	max_min_left=146	max_min_left_minus=127	max_min_left_plus=146	max_min_right=143	max_min_right_minus=143	max_min_right_plus=139	max_pos_hash_score=580	max_right=295	max_right_minus=283	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.42	new_junction_read_count=128	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=124
JC	545	.	NC_000913	1399590	1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=48	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1399590__1__NC_000913__2101749__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=297	max_min_left=135	max_min_left_minus=117	max_min_left_plus=135	max_min_right=149	max_min_right_minus=149	max_min_right_plus=141	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=97
JC	546	.	NC_000913	1399593	-1	NC_000913	2290113	-1	0	alignment_overlap=1	coverage_minus=46	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1399594__-1__NC_000913__2290113__-1__1____300__300__0__1	max_left=298	max_left_minus=291	max_left_plus=298	max_min_left=146	max_min_left_minus=146	max_min_left_plus=134	max_min_right=143	max_min_right_minus=143	max_min_right_plus=131	max_pos_hash_score=586	max_right=292	max_right_minus=292	max_right_plus=287	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.18	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=101
JC	547	.	NC_000913	1411899	1	NC_000913	1434958	-1	0	alignment_overlap=26	coverage_minus=7	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.204e-01	junction_possible_overlap_registers=268	key=NC_000913__1411899__1__NC_000913__1434984__-1__26____300__300__0__0	max_left=259	max_left_minus=259	max_left_plus=245	max_min_left=107	max_min_left_minus=107	max_min_left_plus=71	max_min_right=82	max_min_right_minus=82	max_min_right_plus=43	max_pos_hash_score=536	max_right=270	max_right_minus=231	max_right_plus=270	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.18	new_junction_read_count=15	polymorphism_frequency=1.204e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=26	side_1_possible_overlap_registers=294	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.43	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=119	side_2_redundant=0	total_non_overlap_reads=14
JC	548	.	NC_000913	1590491	1	NC_000913	1651548	-1	0	alignment_overlap=0	coverage_minus=32	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1590491__1__NC_000913__1651548__-1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=296	max_min_left=141	max_min_left_minus=133	max_min_left_plus=141	max_min_right=150	max_min_right_minus=150	max_min_right_plus=139	max_pos_hash_score=588	max_right=289	max_right_minus=289	max_right_plus=251	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.88	new_junction_read_count=80	polymorphism_frequency=9.752e-01	pos_hash_score=54	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=78
JC	549	.	NC_000913	1590495	-1	NC_000913	2070271	-1	0	alignment_overlap=1	coverage_minus=39	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1590496__-1__NC_000913__2070271__-1__1____300__300__0__1	max_left=295	max_left_minus=287	max_left_plus=295	max_min_left=146	max_min_left_minus=146	max_min_left_plus=145	max_min_right=146	max_min_right_minus=135	max_min_right_plus=146	max_pos_hash_score=586	max_right=295	max_right_minus=295	max_right_plus=291	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.07	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=96
JC	550	.	NC_000913	1909925	1	NC_000913	2101749	1	0	alignment_overlap=1	coverage_minus=39	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1909924__1__NC_000913__2101749__1__1____300__300__0__1	max_left=297	max_left_minus=276	max_left_plus=297	max_min_left=144	max_min_left_minus=144	max_min_left_plus=138	max_min_right=140	max_min_right_minus=136	max_min_right_plus=140	max_pos_hash_score=586	max_right=293	max_right_minus=293	max_right_plus=284	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.94	new_junction_read_count=86	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=84
JC	551	.	NC_000913	1909928	-1	NC_000913	2290113	-1	0	alignment_overlap=2	coverage_minus=40	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__1909930__-1__NC_000913__2290113__-1__2____300__300__0__1	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=146	max_min_left_minus=146	max_min_left_plus=144	max_min_right=149	max_min_right_minus=144	max_min_right_plus=149	max_pos_hash_score=584	max_right=287	max_right_minus=287	max_right_plus=286	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.98	new_junction_read_count=89	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=288	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=87
JC	552	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=62	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=286	max_left_minus=284	max_left_plus=286	max_min_left=144	max_min_left_minus=132	max_min_left_plus=144	max_min_right=140	max_min_right_minus=135	max_min_right_plus=140	max_pos_hash_score=572	max_right=291	max_right_minus=291	max_right_plus=286	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.36	new_junction_read_count=121	polymorphism_frequency=9.959e-01	pos_hash_score=72	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=117
JC	553	.	NC_000913	1978503	1	NC_000913	4434636	-1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=22	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1978503__1__NC_000913__4434636__-1__0____300__300__1__0	max_left=296	max_left_minus=286	max_left_plus=296	max_min_left=140	max_min_left_minus=140	max_min_left_plus=123	max_min_right=149	max_min_right_minus=138	max_min_right_plus=149	max_pos_hash_score=588	max_right=283	max_right_minus=283	max_right_plus=278	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.71	new_junction_read_count=65	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=65
JC	554	.	NC_000913	2101749	1	NC_000913	2174359	1	0	alignment_overlap=0	coverage_minus=51	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2101749__1__NC_000913__2174359__1__0____300__300__1__0	max_left=284	max_left_minus=273	max_left_plus=284	max_min_left=141	max_min_left_minus=141	max_min_left_plus=136	max_min_right=149	max_min_right_minus=149	max_min_right_plus=144	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.07	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=98
JC	555	.	NC_000913	2171428	-1	NC_000913	2406178	-1	0	alignment_overlap=2	coverage_minus=30	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=292	key=NC_000913__2171428__-1__NC_000913__2406180__-1__2____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=261	max_min_left=147	max_min_left_minus=111	max_min_left_plus=147	max_min_right=148	max_min_right_minus=148	max_min_right_plus=137	max_pos_hash_score=584	max_right=297	max_right_minus=293	max_right_plus=297	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.78	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=69
JC	556	.	NC_000913	2174362	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2174362__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=298	max_left_minus=271	max_left_plus=298	max_min_left=145	max_min_left_minus=145	max_min_left_plus=144	max_min_right=146	max_min_right_minus=120	max_min_right_plus=146	max_pos_hash_score=588	max_right=290	max_right_minus=290	max_right_plus=287	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=82
JC	557	.	NC_000913	2357713	-1	NC_000913	2357910	1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.142e-02	junction_possible_overlap_registers=293	key=NC_000913__2357713__-1__NC_000913__2357910__1__-1__C__300__300__0__0	max_left=172	max_left_minus=172	max_left_plus=85	max_min_left=139	max_min_left_minus=139	max_min_left_plus=85	max_min_right=115	max_min_right_minus=115	max_min_right_plus=0	max_pos_hash_score=586	max_right=265	max_right_minus=197	max_right_plus=265	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=6.142e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=C
JC	558	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=35	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=285	max_left_minus=281	max_left_plus=285	max_min_left=143	max_min_left_minus=143	max_min_left_plus=141	max_min_right=142	max_min_right_minus=108	max_min_right_plus=142	max_pos_hash_score=572	max_right=263	max_right_minus=252	max_right_plus=263	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=77
JC	559	.	NC_000913	2653502	-1	NC_000913	2653825	1	0	alignment_overlap=34	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.327e-02	junction_possible_overlap_registers=260	key=NC_000913__2653502__-1__NC_000913__2653791__1__34____300__300__0__0	max_left=254	max_left_minus=254	max_left_plus=79	max_min_left=79	max_min_left_minus=79	max_min_left_plus=79	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_pos_hash_score=520	max_right=196	max_right_minus=119	max_right_plus=196	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.327e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=34	side_1_possible_overlap_registers=294	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=260	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=4
JC	560	.	NC_000913	3187426	-1	NC_000913	4344085	-1	0	alignment_overlap=0	coverage_minus=62	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3187426__-1__NC_000913__4344085__-1__0____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=288	max_min_left=149	max_min_left_minus=149	max_min_left_plus=133	max_min_right=141	max_min_right_minus=141	max_min_right_plus=136	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=291	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.15	new_junction_read_count=105	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103
JC	561	.	NC_000913	3269899	-1	NC_000913	3270239	1	0	alignment_overlap=18	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.187e-02	junction_possible_overlap_registers=276	key=NC_000913__3269899__-1__NC_000913__3270221__1__18____300__300__0__0	max_left=99	max_left_minus=99	max_left_plus=99	max_min_left=60	max_min_left_minus=60	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=75	max_pos_hash_score=552	max_right=185	max_right_minus=185	max_right_plus=75	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.187e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=18	side_1_possible_overlap_registers=294	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=3
JC	562	.	NC_000913	3469040	-1	NC_000913	3469344	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.850e-02	junction_possible_overlap_registers=274	key=NC_000913__3469040__-1__NC_000913__3469324__1__20____300__300__0__0	max_left=135	max_left_minus=135	max_left_plus=126	max_min_left=135	max_min_left_minus=135	max_min_left_plus=126	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=548	max_right=169	max_right_minus=148	max_right_plus=169	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.850e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=4
JC	563	.	NC_000913	3583428	1	NC_000913	4434629	1	0	alignment_overlap=0	coverage_minus=62	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3583428__1__NC_000913__4434629__1__0____300__300__1__0	max_left=283	max_left_minus=283	max_left_plus=283	max_min_left=147	max_min_left_minus=123	max_min_left_plus=147	max_min_right=147	max_min_right_minus=147	max_min_right_plus=132	max_pos_hash_score=588	max_right=299	max_right_minus=299	max_right_plus=280	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103
JC	564	.	NC_000913	3583428	1	NC_000913	4542049	-1	0	alignment_overlap=1	coverage_minus=72	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__3583428__1__NC_000913__4542050__-1__1____300__300__1__0	max_left=289	max_left_minus=275	max_left_plus=289	max_min_left=146	max_min_left_minus=146	max_min_left_plus=126	max_min_right=148	max_min_right_minus=148	max_min_right_plus=145	max_pos_hash_score=586	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.32	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119
JC	565	.	NC_000913	3584195	-1	NC_000913	4542042	1	0	alignment_overlap=0	coverage_minus=56	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3584195__-1__NC_000913__4542042__1__0____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=285	max_min_left=149	max_min_left_minus=149	max_min_left_plus=147	max_min_right=147	max_min_right_minus=138	max_min_right_plus=147	max_pos_hash_score=588	max_right=291	max_right_minus=291	max_right_plus=291	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=106
JC	566	.	NC_000913	3648068	-1	NC_000913	3648300	1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.401e-02	junction_possible_overlap_registers=287	key=NC_000913__3648068__-1__NC_000913__3648293__1__7____300__300__0__0	max_left=65	max_left_minus=65	max_left_plus=65	max_min_left=65	max_min_left_minus=65	max_min_left_plus=65	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=574	max_right=227	max_right_minus=227	max_right_plus=227	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.401e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.27	side_1_overlap=7	side_1_possible_overlap_registers=294	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=4
JC	567	.	NC_000913	3720633	1	NC_000913	3762460	1	0	alignment_overlap=0	coverage_minus=31	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=294	key=NC_000913__3720633__1__NC_000913__3762460__1__0____300__300__0__1	max_left=298	max_left_minus=297	max_left_plus=298	max_min_left=132	max_min_left_minus=132	max_min_left_plus=96	max_min_right=149	max_min_right_minus=145	max_min_right_plus=149	max_pos_hash_score=588	max_right=295	max_right_minus=294	max_right_plus=295	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=1.00	new_junction_read_count=91	polymorphism_frequency=NA	pos_hash_score=47	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=90
JC	568	.	NC_000913	3720633	1	NC_000913	4354510	-1	0	alignment_overlap=0	coverage_minus=60	coverage_plus=61	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3720633__1__NC_000913__4354510__-1__0____300__300__0__0	max_left=298	max_left_minus=297	max_left_plus=298	max_min_left=148	max_min_left_minus=148	max_min_left_plus=141	max_min_right=146	max_min_right_minus=146	max_min_right_plus=137	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.32	new_junction_read_count=121	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=121
JC	569	.	NC_000913	3722075	-1	NC_000913	3762462	-1	0	alignment_overlap=0	coverage_minus=27	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3722075__-1__NC_000913__3762462__-1__0____300__300__0__0	max_left=296	max_left_minus=262	max_left_plus=296	max_min_left=143	max_min_left_minus=143	max_min_left_plus=135	max_min_right=145	max_min_right_minus=145	max_min_right_plus=137	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=249	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.76	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	570	.	NC_000913	3722075	-1	NC_000913	4354508	1	0	alignment_overlap=3	coverage_minus=68	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__3722078__-1__NC_000913__4354508__1__3____300__300__0__0	max_left=295	max_left_minus=278	max_left_plus=295	max_min_left=146	max_min_left_minus=146	max_min_left_plus=116	max_min_right=140	max_min_right_minus=140	max_min_right_plus=121	max_pos_hash_score=582	max_right=296	max_right_minus=292	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.39	new_junction_read_count=126	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=121
JC	571	.	NC_000913	4027845	-1	NC_000913	4028275	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.043e-02	junction_possible_overlap_registers=281	key=NC_000913__4027845__-1__NC_000913__4028262__1__13____300__300__0__0	max_left=106	max_left_minus=106	max_left_plus=2	max_min_left=106	max_min_left_minus=106	max_min_left_plus=2	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=562	max_right=142	max_right_minus=119	max_right_plus=142	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.043e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=13	side_1_possible_overlap_registers=294	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=3
JC	572	.	NC_000913	4344081	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=31	coverage_plus=63	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__4344081__1__NC_000913__4498181__1__0____300__300__0__1	max_left=299	max_left_minus=270	max_left_plus=299	max_min_left=137	max_min_left_minus=132	max_min_left_plus=137	max_min_right=145	max_min_right_minus=142	max_min_right_plus=145	max_pos_hash_score=588	max_right=296	max_right_minus=296	max_right_plus=292	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=1.05	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=94
JC	573	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=52	coverage_plus=75	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=287	max_left_minus=287	max_left_plus=285	max_min_left=141	max_min_left_minus=141	max_min_left_plus=139	max_min_right=145	max_min_right_minus=145	max_min_right_plus=126	max_pos_hash_score=570	max_right=288	max_right_minus=288	max_right_plus=276	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.47	new_junction_read_count=130	polymorphism_frequency=8.495e-01	pos_hash_score=75	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.34	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.18	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=16	side_2_redundant=0	total_non_overlap_reads=127
JC	574	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=73	coverage_plus=42	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=279	max_left_minus=279	max_left_plus=276	max_min_left=144	max_min_left_minus=144	max_min_left_plus=141	max_min_right=145	max_min_right_minus=143	max_min_right_plus=145	max_pos_hash_score=570	max_right=288	max_right_minus=288	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.33	new_junction_read_count=118	polymorphism_frequency=8.062e-01	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.46	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.18	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=16	side_2_redundant=0	total_non_overlap_reads=115
JC	575	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.228e-02	junction_possible_overlap_registers=205	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=123	max_left_minus=93	max_left_plus=123	max_min_left=93	max_min_left_minus=93	max_min_left_plus=73	max_min_right=88	max_min_right_minus=0	max_min_right_plus=88	max_pos_hash_score=410	max_right=166	max_right_minus=166	max_right_plus=138	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=6.228e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=89	side_1_possible_overlap_registers=294	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=4
UN	576	.	NC_000913	15647	16458
UN	577	.	NC_000913	20080	20281
UN	578	.	NC_000913	224014	224014
UN	579	.	NC_000913	224019	224510
UN	580	.	NC_000913	225164	225318
UN	581	.	NC_000913	227271	228405
UN	582	.	NC_000913	228408	228408
UN	583	.	NC_000913	228410	228410
UN	584	.	NC_000913	257908	258683
UN	585	.	NC_000913	270791	271015
UN	586	.	NC_000913	271020	271020
UN	587	.	NC_000913	274248	274865
UN	588	.	NC_000913	275509	315228
UN	589	.	NC_000913	315509	315509
UN	590	.	NC_000913	315515	372748
UN	591	.	NC_000913	381539	382335
UN	592	.	NC_000913	391971	392688
UN	593	.	NC_000913	526066	526067
UN	594	.	NC_000913	526070	526075
UN	595	.	NC_000913	526077	526078
UN	596	.	NC_000913	526082	526082
UN	597	.	NC_000913	526085	526085
UN	598	.	NC_000913	526087	526088
UN	599	.	NC_000913	526091	526091
UN	600	.	NC_000913	526093	526098
UN	601	.	NC_000913	526100	526100
UN	602	.	NC_000913	526102	526104
UN	603	.	NC_000913	526106	526459
UN	604	.	NC_000913	526463	526463
UN	605	.	NC_000913	565829	577187
UN	606	.	NC_000913	608283	609087
UN	607	.	NC_000913	688129	688765
UN	608	.	NC_000913	1094509	1094510
UN	609	.	NC_000913	1094512	1095233
UN	610	.	NC_000913	1299499	1300697
UN	611	.	NC_000913	1396320	1396964
UN	612	.	NC_000913	1468157	1468960
UN	613	.	NC_000913	1469541	1469541
UN	614	.	NC_000913	1469545	1470228
UN	615	.	NC_000913	1528510	1528510
UN	616	.	NC_000913	1528520	1528520
UN	617	.	NC_000913	1528534	1528934
UN	618	.	NC_000913	1651100	1651293
UN	619	.	NC_000913	1978503	1979276
UN	620	.	NC_000913	2067002	2067003
UN	621	.	NC_000913	2067006	2067030
UN	622	.	NC_000913	2067032	2067034
UN	623	.	NC_000913	2069196	2070024
UN	624	.	NC_000913	2102011	2102663
UN	625	.	NC_000913	2170426	2170426
UN	626	.	NC_000913	2170431	2170432
UN	627	.	NC_000913	2170434	2171156
UN	628	.	NC_000913	2171159	2171161
UN	629	.	NC_000913	2289183	2289183
UN	630	.	NC_000913	2289191	2289829
UN	631	.	NC_000913	2514536	2514536
UN	632	.	NC_000913	2514539	2514540
UN	633	.	NC_000913	2514547	2515355
UN	634	.	NC_000913	2515358	2515358
UN	635	.	NC_000913	2515376	2515376
UN	636	.	NC_000913	2558699	2565488
UN	637	.	NC_000913	2726325	2726325
UN	638	.	NC_000913	2726329	2728977
UN	639	.	NC_000913	2729795	2730702
UN	640	.	NC_000913	2730705	2730707
UN	641	.	NC_000913	2996616	2997419
UN	642	.	NC_000913	2997421	2997421
UN	643	.	NC_000913	2997424	2997424
UN	644	.	NC_000913	3130426	3131063
UN	645	.	NC_000913	3186362	3187161
UN	646	.	NC_000913	3365834	3366470
UN	647	.	NC_000913	3423922	3424388
UN	648	.	NC_000913	3424928	3426601
UN	649	.	NC_000913	3427098	3428298
UN	650	.	NC_000913	3428302	3428302
UN	651	.	NC_000913	3583701	3583912
UN	652	.	NC_000913	3619528	3620820
UN	653	.	NC_000913	3620822	3620827
UN	654	.	NC_000913	3620831	3620833
UN	655	.	NC_000913	3620843	3620843
UN	656	.	NC_000913	3620856	3620856
UN	657	.	NC_000913	3621333	3621333
UN	658	.	NC_000913	3621336	3622057
UN	659	.	NC_000913	3652294	3652294
UN	660	.	NC_000913	3652299	3652299
UN	661	.	NC_000913	3652308	3652953
UN	662	.	NC_000913	3762463	3763849
UN	663	.	NC_000913	3763852	3763852
UN	664	.	NC_000913	3763861	3763861
UN	665	.	NC_000913	3764318	3765024
UN	666	.	NC_000913	3765040	3765040
UN	667	.	NC_000913	3942300	3943140
UN	668	.	NC_000913	3944326	3945310
UN	669	.	NC_000913	4035438	4036854
UN	670	.	NC_000913	4036860	4036860
UN	671	.	NC_000913	4036865	4036865
UN	672	.	NC_000913	4038100	4038100
UN	673	.	NC_000913	4038107	4038413
UN	674	.	NC_000913	4039001	4039005
UN	675	.	NC_000913	4039007	4039008
UN	676	.	NC_000913	4039011	4039100
UN	677	.	NC_000913	4039664	4039664
UN	678	.	NC_000913	4039666	4039666
UN	679	.	NC_000913	4039673	4040355
UN	680	.	NC_000913	4040357	4040358
UN	681	.	NC_000913	4166923	4167940
UN	682	.	NC_000913	4168833	4168833
UN	683	.	NC_000913	4168838	4171379
UN	684	.	NC_000913	4171391	4171391
UN	685	.	NC_000913	4176790	4176851
UN	686	.	NC_000913	4176854	4176854
UN	687	.	NC_000913	4208390	4209474
UN	688	.	NC_000913	4210299	4212856
UN	689	.	NC_000913	4212858	4212865
UN	690	.	NC_000913	4212867	4212868
UN	691	.	NC_000913	4212871	4212872
UN	692	.	NC_000913	4498476	4499233
UN	693	.	NC_000913	4507743	4507743
UN	694	.	NC_000913	4507751	4508417
UN	695	.	NC_000913	4508422	4508422
UN	696	.	NC_000913	4508425	4508425