#=GENOME_DIFF 1.0 #=CREATED 12:52:37 10 Oct 2025 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8315_S3_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8315_S3_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8315_S3_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=REFSEQ /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8315_S3_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8315_S3_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=CONVERTED-BASES 384507068 #=CONVERTED-READS 1301435 #=INPUT-BASES 384596266 #=INPUT-READS 1301742 #=MAPPED-BASES 369259087 #=MAPPED-READS 1250635 DEL 1 513,525 NC_000913 167570 4 SNP 2 141 NC_000913 192437 G SNP 3 142 NC_000913 193723 A SNP 4 143 NC_000913 224625 A DEL 5 514,526 NC_000913 257908 776 SNP 6 144 NC_000913 262854 A SNP 7 145 NC_000913 284535 G SNP 8 146 NC_000913 313543 A SUB 9 147,148 NC_000913 480295 2 AA SNP 10 149 NC_000913 553161 A SNP 11 224 NC_000913 690948 A SNP 12 225 NC_000913 700038 A MOB 13 528,530 NC_000913 789812 IS2 -1 5 SNP 14 226 NC_000913 791688 A SUB 15 228,229 NC_000913 809217 2 AG SNP 16 232 NC_000913 968837 A SNP 17 233 NC_000913 1040126 T SNP 18 234 NC_000913 1061935 A MOB 19 529,544 NC_000913 1093481 IS2 1 5 SNP 20 235 NC_000913 1100070 A SUB 21 236,237 NC_000913 1111727 2 TT SNP 22 238 NC_000913 1123556 T SNP 23 239 NC_000913 1169836 G SNP 24 240 NC_000913 1189980 G SNP 25 241 NC_000913 1196220 T SNP 26 242 NC_000913 1196232 T SNP 27 243 NC_000913 1196245 C SNP 28 244 NC_000913 1196247 G SNP 29 245 NC_000913 1196277 T SNP 30 246 NC_000913 1196280 C SNP 31 247 NC_000913 1196283 G SNP 32 248 NC_000913 1196292 T SNP 33 249 NC_000913 1196304 A SNP 34 250 NC_000913 1196316 A SNP 35 251 NC_000913 1196325 G DEL 36 516,547 NC_000913 1299499 1199 SNP 37 253 NC_000913 1301992 T SNP 38 254 NC_000913 1306736 G SNP 39 255 NC_000913 1310770 G SNP 40 256 NC_000913 1331947 T SNP 41 258 NC_000913 1337394 G SNP 42 260 NC_000913 1357202 T SNP 43 261 NC_000913 1358859 C SNP 44 262 NC_000913 1412897 A SNP 45 269 NC_000913 1428087 T DEL 46 517,549 NC_000913 1588756 970 SNP 47 388 NC_000913 1610076 G SNP 48 389 NC_000913 1610440 T SNP 49 416 NC_000913 1643679 T MOB 50 550,551 NC_000913 1651851 IS2 -1 5 SNP 51 417 NC_000913 1652331 C DEL 52 518,552 NC_000913 1704350 390 SNP 53 418 NC_000913 1721136 T SNP 54 419 NC_000913 1738377 T SNP 55 420 NC_000913 1776715 T SNP 56 421 NC_000913 1856968 A SNP 57 422 NC_000913 1894839 C SNP 58 423 NC_000913 1975224 A SNP 59 424 NC_000913 1987499 A SNP 60 425 NC_000913 2003276 C SNP 61 426 NC_000913 2003462 A SNP 62 427 NC_000913 2040433 A DEL 63 429,430 NC_000913 2173363 2 SNP 64 431 NC_000913 2175991 A SNP 65 432 NC_000913 2188087 C DEL 66 520,554 NC_000913 2238416 19 DEL 67 433 NC_000913 2263441 1 SNP 68 434 NC_000913 2280520 G SNP 69 435 NC_000913 2384808 T SNP 70 436 NC_000913 2410419 A SNP 71 437 NC_000913 2484827 T SNP 72 438 NC_000913 2700747 A SNP 73 439 NC_000913 2748396 A SNP 74 441 NC_000913 2756976 A SNP 75 442 NC_000913 2780060 A SNP 76 443 NC_000913 2792209 A SNP 77 444 NC_000913 2800435 A SNP 78 445 NC_000913 2810925 A SNP 79 446 NC_000913 2817850 A SNP 80 447 NC_000913 2825328 A SNP 81 448 NC_000913 2841238 A SNP 82 449 NC_000913 2863773 T SNP 83 450 NC_000913 2878077 T SNP 84 451 NC_000913 2889365 T SNP 85 452 NC_000913 2905825 T MOB 86 561,562 NC_000913 2913392 IS2 -1 5 SNP 87 453 NC_000913 2926292 T SUB 88 456,457 NC_000913 3088010 2 TT DEL 89 458 NC_000913 3207549 1 SUB 90 460,461 NC_000913 3336411 2 AT SNP 91 462 NC_000913 3367944 A SNP 92 463 NC_000913 3388041 G SNP 93 464 NC_000913 3399929 T SNP 94 465 NC_000913 3436697 A SNP 95 466 NC_000913 3449779 A SNP 96 467 NC_000913 3468768 T SNP 97 468 NC_000913 3474425 C SNP 98 469 NC_000913 3543877 A INS 99 470 NC_000913 3560455 G SNP 100 471 NC_000913 3629921 T SNP 101 472 NC_000913 3682515 T SNP 102 473 NC_000913 3696909 A SNP 103 474 NC_000913 3707947 A DEL 104 522,566 NC_000913 3708467 168 SNP 105 475 NC_000913 3725176 G SNP 106 476 NC_000913 3761230 A SNP 107 477 NC_000913 3771979 T INS 108 478 NC_000913 3815883 C INS 109 567 NC_000913 3822651 CAGGAT repeat_length=6 repeat_new_copies=2 repeat_ref_copies=1 repeat_seq=CAGGAT SNP 110 479 NC_000913 3823162 T SNP 111 480 NC_000913 3869637 A SNP 112 481 NC_000913 3878536 A SNP 113 482 NC_000913 3883678 A SNP 114 484 NC_000913 3912074 A SNP 115 485 NC_000913 3999664 T SNP 116 486 NC_000913 4009698 A SNP 117 487 NC_000913 4012448 C DEL 118 488 NC_000913 4012454 1 SNP 119 489 NC_000913 4017197 T SNP 120 490 NC_000913 4084903 G SNP 121 491 NC_000913 4092703 G SNP 122 492 NC_000913 4143377 T SNP 123 493 NC_000913 4156839 A DEL 124 494 NC_000913 4157116 1 SNP 125 495 NC_000913 4208132 A SNP 126 496 NC_000913 4223638 C SUB 127 497,498 NC_000913 4293781 2 AT INS 128 500,501 NC_000913 4296381 GC SNP 129 502 NC_000913 4325644 T SNP 130 503 NC_000913 4425688 A SNP 131 504 NC_000913 4425696 A SUB 132 505,506 NC_000913 4436956 2 TT SNP 133 507 NC_000913 4532409 G SNP 134 508 NC_000913 4546601 T SNP 135 509 NC_000913 4578548 A SNP 136 510 NC_000913 4585230 G SNP 137 511 NC_000913 4636925 C SNP 138 512 NC_000913 4638240 A RA 139 . NC_000913 42395 0 G T bias_e_value=2.04384 bias_p_value=4.40326e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=175.5 fisher_strand_p_value=2.37288e-08 frequency=3.162e-01 ks_quality_p_value=1 major_base=G major_cov=37/43 major_frequency=6.838e-01 minor_base=T minor_cov=0/37 new_cov=0/37 polymorphism_frequency=3.162e-01 polymorphism_score=18.2 prediction=polymorphism ref_cov=37/43 total_cov=37/80 RA 140 . NC_000913 58065 0 C A bias_e_value=923.728 bias_p_value=0.000199008 consensus_reject=FREQUENCY_CUTOFF consensus_score=65.2 fisher_strand_p_value=1.65734e-05 frequency=3.393e-01 ks_quality_p_value=1 major_base=C major_cov=16/21 major_frequency=6.607e-01 minor_base=A minor_cov=19/0 new_cov=19/0 polymorphism_frequency=3.393e-01 polymorphism_score=13.9 prediction=polymorphism ref_cov=16/21 total_cov=35/21 RA 141 . NC_000913 192437 0 A G consensus_score=221.8 frequency=1 major_base=G major_cov=33/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/30 RA 142 . NC_000913 193723 0 T A bias_e_value=4641650 bias_p_value=1 consensus_score=206.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=25/32 major_frequency=9.661e-01 minor_base=G minor_cov=1/1 new_cov=25/32 polymorphism_frequency=9.661e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/0 total_cov=26/33 RA 143 . NC_000913 224625 0 T A consensus_score=72.7 frequency=1 major_base=A major_cov=16/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/9 RA 144 . NC_000913 262854 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=280.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=51/32 major_frequency=9.881e-01 minor_base=C minor_cov=1/0 new_cov=51/32 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/32 RA 145 . NC_000913 284535 0 T G consensus_score=118.7 frequency=1 major_base=G major_cov=17/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=17/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/18 RA 146 . NC_000913 313543 0 G A consensus_score=270.2 frequency=1 major_base=A major_cov=44/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/39 RA 147 . NC_000913 480295 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=339.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=46/47 major_frequency=9.894e-01 minor_base=C minor_cov=1/0 new_cov=46/47 polymorphism_frequency=9.894e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/47 RA 148 . NC_000913 480296 0 G A consensus_score=339.8 frequency=1 major_base=A major_cov=47/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/47 RA 149 . NC_000913 553161 0 G A consensus_score=178.1 frequency=1 major_base=A major_cov=34/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/21 RA 150 . NC_000913 566173 0 C G bias_e_value=343327 bias_p_value=0.0739666 consensus_reject=FREQUENCY_CUTOFF consensus_score=198.9 fisher_strand_p_value=0.0177475 frequency=2.143e-01 ks_quality_p_value=0.791547 major_base=C major_cov=30/36 major_frequency=7.857e-01 minor_base=G minor_cov=14/4 new_cov=14/4 polymorphism_frequency=2.143e-01 polymorphism_score=53.9 prediction=polymorphism ref_cov=30/36 total_cov=44/40 RA 151 . NC_000913 566205 0 T C bias_e_value=336181 bias_p_value=0.0724271 consensus_reject=FREQUENCY_CUTOFF consensus_score=165.1 fisher_strand_p_value=0.0175224 frequency=2.195e-01 ks_quality_p_value=0.781179 major_base=T major_cov=29/35 major_frequency=7.805e-01 minor_base=C minor_cov=14/4 new_cov=14/4 polymorphism_frequency=2.195e-01 polymorphism_score=47.6 prediction=polymorphism ref_cov=29/35 total_cov=43/39 RA 152 . NC_000913 566245 0 G A bias_e_value=1483240 bias_p_value=0.31955 consensus_reject=FREQUENCY_CUTOFF consensus_score=130.0 fisher_strand_p_value=0.0953962 frequency=2.535e-01 ks_quality_p_value=1 major_base=G major_cov=28/25 major_frequency=7.465e-01 minor_base=A minor_cov=14/4 new_cov=14/4 polymorphism_frequency=2.535e-01 polymorphism_score=46.6 prediction=polymorphism ref_cov=28/25 total_cov=42/29 RA 153 . NC_000913 566277 0 C T bias_e_value=1373250 bias_p_value=0.295854 consensus_reject=FREQUENCY_CUTOFF consensus_score=134.9 fisher_strand_p_value=0.0982915 frequency=2.432e-01 ks_quality_p_value=0.870231 major_base=C major_cov=30/26 major_frequency=7.568e-01 minor_base=T minor_cov=14/4 new_cov=14/4 polymorphism_frequency=2.432e-01 polymorphism_score=48.6 prediction=polymorphism ref_cov=30/26 total_cov=44/30 RA 154 . NC_000913 566323 0 C T bias_e_value=1449100 bias_p_value=0.312196 consensus_reject=FREQUENCY_CUTOFF consensus_score=99.6 fisher_strand_p_value=0.092288 frequency=2.857e-01 ks_quality_p_value=1 major_base=C major_cov=24/21 major_frequency=7.143e-01 minor_base=T minor_cov=14/4 new_cov=14/4 polymorphism_frequency=2.857e-01 polymorphism_score=45.4 prediction=polymorphism ref_cov=24/21 total_cov=38/25 RA 155 . NC_000913 566326 0 T C bias_e_value=1503220 bias_p_value=0.323854 consensus_reject=FREQUENCY_CUTOFF consensus_score=103.7 fisher_strand_p_value=0.0972355 frequency=2.812e-01 ks_quality_p_value=1 major_base=T major_cov=25/21 major_frequency=7.188e-01 minor_base=C minor_cov=14/4 new_cov=14/4 polymorphism_frequency=2.812e-01 polymorphism_score=46.9 prediction=polymorphism ref_cov=25/21 total_cov=39/25 RA 156 . NC_000913 566332 0 T G bias_e_value=1417560 bias_p_value=0.305399 consensus_reject=FREQUENCY_CUTOFF consensus_score=78.5 fisher_strand_p_value=0.0896706 frequency=2.812e-01 ks_quality_p_value=0.997587 major_base=T major_cov=24/22 major_frequency=7.188e-01 minor_base=G minor_cov=14/4 new_cov=14/4 polymorphism_frequency=2.812e-01 polymorphism_score=53.1 prediction=polymorphism ref_cov=24/22 total_cov=38/26 RA 157 . NC_000913 566356 0 T C bias_e_value=1812030 bias_p_value=0.390384 consensus_reject=FREQUENCY_CUTOFF consensus_score=115.1 fisher_strand_p_value=0.177054 frequency=2.000e-01 ks_quality_p_value=0.720887 major_base=T major_cov=20/24 major_frequency=8.000e-01 minor_base=C minor_cov=8/3 new_cov=8/3 polymorphism_frequency=2.000e-01 polymorphism_score=26.5 prediction=polymorphism ref_cov=20/24 total_cov=28/27 RA 158 . NC_000913 566396 0 T A bias_e_value=4011220 bias_p_value=0.864179 consensus_reject=FREQUENCY_CUTOFF consensus_score=131.2 fisher_strand_p_value=0.532435 frequency=2.456e-01 ks_quality_p_value=0.988641 major_base=T major_cov=16/27 major_frequency=7.544e-01 minor_base=A minor_cov=7/7 new_cov=7/7 polymorphism_frequency=2.456e-01 polymorphism_score=49.5 prediction=polymorphism ref_cov=16/27 total_cov=23/34 RA 159 . NC_000913 566414 0 A G bias_e_value=3634090 bias_p_value=0.782931 consensus_reject=FREQUENCY_CUTOFF consensus_score=86.1 fisher_strand_p_value=0.418368 frequency=3.175e-01 ks_quality_p_value=1 major_base=A major_cov=18/25 major_frequency=6.825e-01 minor_base=G minor_cov=11/9 new_cov=11/9 polymorphism_frequency=3.175e-01 polymorphism_score=51.3 prediction=polymorphism ref_cov=18/25 total_cov=29/34 RA 160 . NC_000913 566435 0 G A bias_e_value=4641110 bias_p_value=0.999884 consensus_reject=FREQUENCY_CUTOFF consensus_score=72.8 fisher_strand_p_value=1 frequency=3.521e-01 ks_quality_p_value=0.984807 major_base=G major_cov=21/25 major_frequency=6.479e-01 minor_base=A minor_cov=11/14 new_cov=11/14 polymorphism_frequency=3.521e-01 polymorphism_score=72.9 prediction=polymorphism ref_cov=21/25 total_cov=32/39 RA 161 . NC_000913 566444 0 T C bias_e_value=4303110 bias_p_value=0.927064 consensus_reject=FREQUENCY_CUTOFF consensus_score=68.8 fisher_strand_p_value=0.643246 frequency=3.816e-01 ks_quality_p_value=1 major_base=T major_cov=20/27 major_frequency=6.184e-01 minor_base=C minor_cov=14/15 new_cov=14/15 polymorphism_frequency=3.816e-01 polymorphism_score=76.8 prediction=polymorphism ref_cov=20/27 total_cov=34/42 RA 162 . NC_000913 566451 0 T C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=58.0 fisher_strand_p_value=1 frequency=4.026e-01 ks_quality_p_value=1 major_base=T major_cov=22/24 major_frequency=5.974e-01 minor_base=C minor_cov=15/16 new_cov=15/16 polymorphism_frequency=4.026e-01 polymorphism_score=83.3 prediction=polymorphism ref_cov=22/24 total_cov=37/40 RA 163 . NC_000913 566463 0 T C bias_e_value=4624560 bias_p_value=0.996317 consensus_reject=FREQUENCY_CUTOFF consensus_score=42.0 fisher_strand_p_value=1 frequency=4.156e-01 ks_quality_p_value=0.915409 major_base=T major_cov=22/23 major_frequency=5.844e-01 minor_base=C minor_cov=16/16 new_cov=16/16 polymorphism_frequency=4.156e-01 polymorphism_score=93.8 prediction=polymorphism ref_cov=22/23 total_cov=38/39 RA 164 . NC_000913 566468 0 C T bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=39.5 fisher_strand_p_value=1 frequency=4.375e-01 ks_quality_p_value=1 major_base=C major_cov=23/22 major_frequency=5.625e-01 minor_base=T minor_cov=17/18 new_cov=17/18 polymorphism_frequency=4.375e-01 polymorphism_score=97.3 prediction=polymorphism ref_cov=23/22 total_cov=40/40 RA 165 . NC_000913 566492 0 G T bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=30.0 fisher_strand_p_value=1 frequency=4.634e-01 ks_quality_p_value=1 major_base=G major_cov=23/21 major_frequency=5.366e-01 minor_base=T minor_cov=19/19 new_cov=19/19 polymorphism_frequency=4.634e-01 polymorphism_score=108.8 prediction=polymorphism ref_cov=23/21 total_cov=42/40 RA 166 . NC_000913 566493 0 G A bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=27.4 fisher_strand_p_value=1 frequency=4.512e-01 ks_quality_p_value=1 major_base=G major_cov=23/22 major_frequency=5.488e-01 minor_base=A minor_cov=19/18 new_cov=19/18 polymorphism_frequency=4.512e-01 polymorphism_score=108.7 prediction=polymorphism ref_cov=23/22 total_cov=42/40 RA 167 . NC_000913 566498 0 C T bias_e_value=4554700 bias_p_value=0.981267 consensus_reject=FREQUENCY_CUTOFF consensus_score=16.1 fisher_strand_p_value=1 frequency=4.458e-01 ks_quality_p_value=0.81279 major_base=C major_cov=23/23 major_frequency=5.542e-01 minor_base=T minor_cov=19/18 new_cov=19/18 polymorphism_frequency=4.458e-01 polymorphism_score=113.5 prediction=polymorphism ref_cov=23/23 total_cov=42/41 RA 168 . NC_000913 566510 0 G C bias_e_value=4641570 bias_p_value=0.999982 consensus_reject=FREQUENCY_CUTOFF consensus_score=53.0 fisher_strand_p_value=1 frequency=4.253e-01 ks_quality_p_value=0.994004 major_base=G major_cov=25/25 major_frequency=5.747e-01 minor_base=C minor_cov=19/18 new_cov=19/18 polymorphism_frequency=4.253e-01 polymorphism_score=128.9 prediction=polymorphism ref_cov=25/25 total_cov=44/43 RA 169 . NC_000913 566513 0 C T bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=43.9 fisher_strand_p_value=1 frequency=4.253e-01 ks_quality_p_value=1 major_base=C major_cov=25/25 major_frequency=5.747e-01 minor_base=T minor_cov=19/18 new_cov=19/18 polymorphism_frequency=4.253e-01 polymorphism_score=109.7 prediction=polymorphism ref_cov=25/25 total_cov=44/43 RA 170 . NC_000913 566519 0 T C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=48.4 fisher_strand_p_value=1 frequency=4.205e-01 ks_quality_p_value=1 major_base=T major_cov=26/25 major_frequency=5.795e-01 minor_base=C minor_cov=19/18 new_cov=19/18 polymorphism_frequency=4.205e-01 polymorphism_score=104.9 prediction=polymorphism ref_cov=26/25 total_cov=45/43 RA 171 . NC_000913 566522 0 C A bias_e_value=4640220 bias_p_value=0.999692 consensus_reject=FREQUENCY_CUTOFF consensus_score=71.5 fisher_strand_p_value=1 frequency=4.111e-01 ks_quality_p_value=0.975278 major_base=C major_cov=26/27 major_frequency=5.889e-01 minor_base=A minor_cov=19/18 new_cov=19/18 polymorphism_frequency=4.111e-01 polymorphism_score=96.1 prediction=polymorphism ref_cov=26/27 total_cov=45/45 RA 172 . NC_000913 566528 0 A G bias_e_value=4630680 bias_p_value=0.997635 consensus_reject=FREQUENCY_CUTOFF consensus_score=61.2 fisher_strand_p_value=1 frequency=4.066e-01 ks_quality_p_value=0.932021 major_base=A major_cov=27/27 major_frequency=5.934e-01 minor_base=G minor_cov=19/18 new_cov=19/18 polymorphism_frequency=4.066e-01 polymorphism_score=103.5 prediction=polymorphism ref_cov=27/27 total_cov=46/45 RA 173 . NC_000913 566530 1 . T bias_e_value=4522430 bias_p_value=0.974314 consensus_reject=FREQUENCY_CUTOFF consensus_score=52.6 fisher_strand_p_value=0.829826 frequency=4.000e-01 ks_quality_p_value=0.942462 major_base=. major_cov=26/28 major_frequency=6.000e-01 minor_base=T minor_cov=19/17 new_cov=19/17 polymorphism_frequency=4.000e-01 polymorphism_score=190.8 prediction=polymorphism ref_cov=26/28 total_cov=45/45 RA 174 . NC_000913 566532 0 A T bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=80.9 fisher_strand_p_value=1 frequency=4.000e-01 ks_quality_p_value=1 major_base=A major_cov=28/26 major_frequency=6.000e-01 minor_base=T minor_cov=19/17 new_cov=19/17 polymorphism_frequency=4.000e-01 polymorphism_score=141.0 prediction=polymorphism ref_cov=28/26 total_cov=47/44 RA 175 . NC_000913 566535 0 T . bias_e_value=4534110 bias_p_value=0.976832 consensus_reject=FREQUENCY_CUTOFF consensus_score=180.9 fisher_strand_p_value=0.833134 frequency=3.913e-01 ks_quality_p_value=0.951361 major_base=T major_cov=31/25 major_frequency=6.087e-01 minor_base=. minor_cov=19/17 new_cov=19/17 polymorphism_frequency=3.913e-01 polymorphism_score=158.9 prediction=polymorphism ref_cov=31/25 total_cov=50/44 RA 176 . NC_000913 566536 0 G A bias_e_value=4573890 bias_p_value=0.985401 consensus_reject=FREQUENCY_CUTOFF consensus_score=73.1 fisher_strand_p_value=0.834063 frequency=3.936e-01 ks_quality_p_value=1 major_base=G major_cov=31/26 major_frequency=6.064e-01 minor_base=A minor_cov=19/18 new_cov=19/18 polymorphism_frequency=3.936e-01 polymorphism_score=105.9 prediction=polymorphism ref_cov=31/26 total_cov=50/44 RA 177 . NC_000913 566543 0 A T bias_e_value=4367970 bias_p_value=0.941037 consensus_reject=FREQUENCY_CUTOFF consensus_score=106.7 fisher_strand_p_value=0.676872 frequency=3.814e-01 ks_quality_p_value=1 major_base=A major_cov=34/26 major_frequency=6.186e-01 minor_base=T minor_cov=19/18 new_cov=19/18 polymorphism_frequency=3.814e-01 polymorphism_score=141.1 prediction=polymorphism ref_cov=34/26 total_cov=53/44 RA 178 . NC_000913 566547 0 C A bias_e_value=4021460 bias_p_value=0.866386 consensus_reject=FREQUENCY_CUTOFF consensus_score=96.5 fisher_strand_p_value=0.529843 frequency=3.895e-01 ks_quality_p_value=1 major_base=C major_cov=34/24 major_frequency=6.105e-01 minor_base=A minor_cov=19/18 new_cov=19/18 polymorphism_frequency=3.895e-01 polymorphism_score=96.8 prediction=polymorphism ref_cov=34/24 total_cov=53/42 RA 179 . NC_000913 566565 0 A G bias_e_value=4360630 bias_p_value=0.939456 consensus_reject=FREQUENCY_CUTOFF consensus_score=60.7 fisher_strand_p_value=0.672852 frequency=4.086e-01 ks_quality_p_value=1 major_base=A major_cov=32/23 major_frequency=5.914e-01 minor_base=G minor_cov=20/18 new_cov=20/18 polymorphism_frequency=4.086e-01 polymorphism_score=106.5 prediction=polymorphism ref_cov=32/23 total_cov=52/41 RA 180 . NC_000913 566570 0 A C bias_e_value=3993500 bias_p_value=0.860361 consensus_reject=FREQUENCY_CUTOFF consensus_score=47.7 fisher_strand_p_value=0.520511 frequency=4.022e-01 ks_quality_p_value=0.999957 major_base=A major_cov=33/22 major_frequency=5.978e-01 minor_base=C minor_cov=19/18 new_cov=19/18 polymorphism_frequency=4.022e-01 polymorphism_score=112.8 prediction=polymorphism ref_cov=33/22 total_cov=52/40 RA 181 . NC_000913 566597 0 T C bias_e_value=2368120 bias_p_value=0.510189 consensus_reject=FREQUENCY_CUTOFF consensus_score=66.3 fisher_strand_p_value=0.192812 frequency=4.111e-01 ks_quality_p_value=1 major_base=T major_cov=35/18 major_frequency=5.889e-01 minor_base=C minor_cov=19/18 new_cov=19/18 polymorphism_frequency=4.111e-01 polymorphism_score=103.6 prediction=polymorphism ref_cov=35/18 total_cov=54/36 RA 182 . NC_000913 566651 0 T C bias_e_value=3847770 bias_p_value=0.828965 consensus_reject=FREQUENCY_CUTOFF consensus_score=74.2 fisher_strand_p_value=0.502962 frequency=3.793e-01 ks_quality_p_value=0.945356 major_base=T major_cov=33/21 major_frequency=6.207e-01 minor_base=C minor_cov=17/16 new_cov=17/16 polymorphism_frequency=3.793e-01 polymorphism_score=93.1 prediction=polymorphism ref_cov=33/21 total_cov=50/38 RA 183 . NC_000913 578244 0 A G bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=244.4 fisher_strand_p_value=1 frequency=2.165e-01 ks_quality_p_value=1 major_base=A major_cov=28/48 major_frequency=7.835e-01 minor_base=G minor_cov=8/13 new_cov=8/13 polymorphism_frequency=2.165e-01 polymorphism_score=49.0 prediction=polymorphism ref_cov=28/48 total_cov=36/61 RA 184 . NC_000913 578331 0 G T bias_e_value=2945860 bias_p_value=0.634658 consensus_reject=FREQUENCY_CUTOFF consensus_score=157.0 fisher_strand_p_value=0.27861 frequency=4.091e-01 ks_quality_p_value=1 major_base=G major_cov=32/46 major_frequency=5.909e-01 minor_base=T minor_cov=17/37 new_cov=17/37 polymorphism_frequency=4.091e-01 polymorphism_score=132.5 prediction=polymorphism ref_cov=32/46 total_cov=49/83 RA 185 . NC_000913 578427 0 G C bias_e_value=3488350 bias_p_value=0.751531 consensus_reject=FREQUENCY_CUTOFF consensus_score=18.0 fisher_strand_p_value=0.384 frequency=5.115e-01 ks_quality_p_value=1 major_base=C major_cov=29/38 major_frequency=5.115e-01 minor_base=G minor_cov=33/31 new_cov=29/38 polymorphism_frequency=5.115e-01 polymorphism_score=230.4 prediction=polymorphism ref_cov=33/31 total_cov=63/69 RA 186 . NC_000913 578571 0 C T bias_e_value=4315390 bias_p_value=0.92971 consensus_reject=FREQUENCY_CUTOFF consensus_score=14.6 fisher_strand_p_value=0.649307 frequency=5.130e-01 ks_quality_p_value=1 major_base=T major_cov=67/32 major_frequency=5.130e-01 minor_base=C minor_cov=60/34 new_cov=67/32 polymorphism_frequency=5.130e-01 polymorphism_score=293.5 prediction=polymorphism ref_cov=60/34 total_cov=127/66 RA 187 . NC_000913 578574 0 A C bias_e_value=4318740 bias_p_value=0.930431 consensus_reject=FREQUENCY_CUTOFF consensus_score=62.8 fisher_strand_p_value=0.650982 frequency=5.103e-01 ks_quality_p_value=1 major_base=C major_cov=67/32 major_frequency=5.103e-01 minor_base=A minor_cov=61/34 new_cov=67/32 polymorphism_frequency=5.103e-01 polymorphism_score=256.3 prediction=polymorphism ref_cov=61/34 total_cov=128/66 RA 188 . NC_000913 578605 0 T G bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=63.7 fisher_strand_p_value=1 frequency=5.192e-01 ks_quality_p_value=1 major_base=G major_cov=71/37 major_frequency=5.192e-01 minor_base=T minor_cov=65/35 new_cov=71/37 polymorphism_frequency=5.192e-01 polymorphism_score=297.2 prediction=polymorphism ref_cov=65/35 total_cov=136/72 RA 189 . NC_000913 578729 0 A G bias_e_value=4613500 bias_p_value=0.993935 consensus_reject=FREQUENCY_CUTOFF consensus_score=91.6 fisher_strand_p_value=0.891985 frequency=5.498e-01 ks_quality_p_value=0.999906 major_base=G major_cov=79/48 major_frequency=5.498e-01 minor_base=A minor_cov=63/41 new_cov=79/48 polymorphism_frequency=5.498e-01 polymorphism_score=310.2 prediction=polymorphism ref_cov=63/41 total_cov=142/93 RA 190 . NC_000913 578809 0 T C bias_e_value=4532830 bias_p_value=0.976556 consensus_reject=FREQUENCY_CUTOFF consensus_score=98.7 fisher_strand_p_value=0.791849 frequency=5.598e-01 ks_quality_p_value=0.999467 major_base=C major_cov=60/71 major_frequency=5.598e-01 minor_base=T minor_cov=45/58 new_cov=60/71 polymorphism_frequency=5.598e-01 polymorphism_score=inf prediction=polymorphism ref_cov=45/58 total_cov=105/129 RA 191 . NC_000913 578811 0 T G bias_e_value=4493090 bias_p_value=0.967994 consensus_reject=FREQUENCY_CUTOFF consensus_score=147.8 fisher_strand_p_value=0.791849 frequency=5.598e-01 ks_quality_p_value=0.957132 major_base=G major_cov=60/71 major_frequency=5.598e-01 minor_base=T minor_cov=45/58 new_cov=60/71 polymorphism_frequency=5.598e-01 polymorphism_score=288.8 prediction=polymorphism ref_cov=45/58 total_cov=105/129 RA 192 . NC_000913 578831 0 T C bias_e_value=4539440 bias_p_value=0.97798 consensus_reject=FREQUENCY_CUTOFF consensus_score=121.6 fisher_strand_p_value=0.79762 frequency=5.647e-01 ks_quality_p_value=1 major_base=C major_cov=60/84 major_frequency=5.647e-01 minor_base=T minor_cov=44/67 new_cov=60/84 polymorphism_frequency=5.647e-01 polymorphism_score=inf prediction=polymorphism ref_cov=44/67 total_cov=104/151 RA 193 . NC_000913 579004 0 C T bias_e_value=1067560 bias_p_value=0.229995 consensus_reject=FREQUENCY_CUTOFF consensus_score=19.6 fisher_strand_p_value=0.0871151 frequency=5.207e-01 ks_quality_p_value=0.693609 major_base=T major_cov=32/81 major_frequency=5.207e-01 minor_base=C minor_cov=41/63 new_cov=32/81 polymorphism_frequency=5.207e-01 polymorphism_score=inf prediction=polymorphism ref_cov=41/63 total_cov=73/144 RA 194 . NC_000913 579099 0 A . bias_e_value=3171660 bias_p_value=0.683305 consensus_reject=FREQUENCY_CUTOFF consensus_score=316.7 fisher_strand_p_value=0.320055 frequency=5.279e-01 ks_quality_p_value=0.996228 major_base=. major_cov=46/58 major_frequency=5.279e-01 minor_base=A minor_cov=48/45 new_cov=46/58 polymorphism_frequency=5.279e-01 polymorphism_score=inf prediction=polymorphism ref_cov=48/45 total_cov=94/103 RA 195 . NC_000913 579127 0 T C bias_e_value=3343030 bias_p_value=0.720224 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=2.3 fisher_strand_p_value=0.352664 frequency=5.084e-01 ks_quality_p_value=1 major_base=C major_cov=54/37 major_frequency=5.084e-01 minor_base=T minor_cov=59/29 new_cov=54/37 polymorphism_frequency=5.084e-01 polymorphism_score=277.3 prediction=polymorphism ref_cov=59/29 total_cov=114/66 RA 196 . NC_000913 579134 0 T C bias_e_value=3073280 bias_p_value=0.662109 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=0.3 fisher_strand_p_value=0.356506 frequency=5.028e-01 ks_quality_p_value=0.84364 major_base=C major_cov=54/37 major_frequency=5.028e-01 minor_base=T minor_cov=60/30 new_cov=54/37 polymorphism_frequency=5.028e-01 polymorphism_score=289.9 prediction=polymorphism ref_cov=60/30 total_cov=114/67 RA 197 . NC_000913 579146 0 A G bias_e_value=4606590 bias_p_value=0.992446 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=6.4 fisher_strand_p_value=0.879634 frequency=4.949e-01 ks_quality_p_value=1 major_base=A major_cov=67/32 major_frequency=5.051e-01 minor_base=G minor_cov=64/33 new_cov=64/33 polymorphism_frequency=4.949e-01 polymorphism_score=308.1 prediction=polymorphism ref_cov=67/32 total_cov=131/66 RA 198 . NC_000913 579271 0 G A bias_e_value=2588380 bias_p_value=0.557643 consensus_reject=FREQUENCY_CUTOFF consensus_score=47.4 fisher_strand_p_value=0.223009 frequency=5.263e-01 ks_quality_p_value=1 major_base=A major_cov=77/43 major_frequency=5.263e-01 minor_base=G minor_cov=60/48 new_cov=77/43 polymorphism_frequency=5.263e-01 polymorphism_score=inf prediction=polymorphism ref_cov=60/48 total_cov=137/91 RA 199 . NC_000913 579285 0 T C bias_e_value=1244340 bias_p_value=0.268082 consensus_reject=FREQUENCY_CUTOFF consensus_score=21.3 fisher_strand_p_value=0.2814 frequency=5.319e-01 ks_quality_p_value=0.264896 major_base=C major_cov=82/43 major_frequency=5.319e-01 minor_base=T minor_cov=64/46 new_cov=82/43 polymorphism_frequency=5.319e-01 polymorphism_score=inf prediction=polymorphism ref_cov=64/46 total_cov=147/90 RA 200 . NC_000913 579385 0 A G bias_e_value=4280240 bias_p_value=0.922137 consensus_reject=FREQUENCY_CUTOFF consensus_score=31.0 fisher_strand_p_value=0.632291 frequency=4.911e-01 ks_quality_p_value=1 major_base=A major_cov=75/68 major_frequency=5.089e-01 minor_base=G minor_cov=77/61 new_cov=77/61 polymorphism_frequency=4.911e-01 polymorphism_score=inf prediction=polymorphism ref_cov=75/68 total_cov=152/130 RA 201 . NC_000913 579457 0 A G bias_e_value=4430150 bias_p_value=0.954433 consensus_reject=FREQUENCY_CUTOFF consensus_score=62.1 fisher_strand_p_value=0.713723 frequency=4.758e-01 ks_quality_p_value=1 major_base=A major_cov=68/73 major_frequency=5.242e-01 minor_base=G minor_cov=58/70 new_cov=58/70 polymorphism_frequency=4.758e-01 polymorphism_score=inf prediction=polymorphism ref_cov=68/73 total_cov=126/144 RA 202 . NC_000913 579502 0 A G bias_e_value=2978620 bias_p_value=0.641716 consensus_reject=FREQUENCY_CUTOFF consensus_score=36.5 fisher_strand_p_value=0.284176 frequency=4.929e-01 ks_quality_p_value=1 major_base=A major_cov=72/70 major_frequency=5.071e-01 minor_base=G minor_cov=61/77 new_cov=61/77 polymorphism_frequency=4.929e-01 polymorphism_score=inf prediction=polymorphism ref_cov=72/70 total_cov=133/148 RA 203 . NC_000913 579540 0 T C bias_e_value=2244820 bias_p_value=0.483624 consensus_reject=FREQUENCY_CUTOFF consensus_score=55.7 fisher_strand_p_value=0.177169 frequency=4.755e-01 ks_quality_p_value=0.999472 major_base=T major_cov=69/70 major_frequency=5.245e-01 minor_base=C minor_cov=52/74 new_cov=52/74 polymorphism_frequency=4.755e-01 polymorphism_score=inf prediction=polymorphism ref_cov=69/70 total_cov=122/144 RA 204 . NC_000913 579651 0 C T bias_e_value=4252140 bias_p_value=0.916084 consensus_reject=FREQUENCY_CUTOFF consensus_score=15.6 fisher_strand_p_value=0.619377 frequency=5.000e-01 ks_quality_p_value=1 major_base=T major_cov=66/64 major_frequency=5.000e-01 minor_base=C minor_cov=71/59 new_cov=66/64 polymorphism_frequency=5.000e-01 polymorphism_score=inf prediction=polymorphism ref_cov=71/59 total_cov=138/123 RA 205 . NC_000913 579671 0 T C bias_e_value=3815800 bias_p_value=0.822079 consensus_reject=FREQUENCY_CUTOFF consensus_score=10.3 fisher_strand_p_value=0.697169 frequency=5.021e-01 ks_quality_p_value=0.668898 major_base=C major_cov=64/55 major_frequency=5.021e-01 minor_base=T minor_cov=60/58 new_cov=64/55 polymorphism_frequency=5.021e-01 polymorphism_score=inf prediction=polymorphism ref_cov=60/58 total_cov=126/113 RA 206 . NC_000913 579717 0 A C bias_e_value=3153550 bias_p_value=0.679402 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-1.3 fisher_strand_p_value=0.31545 frequency=4.862e-01 ks_quality_p_value=1 major_base=A major_cov=59/71 major_frequency=5.138e-01 minor_base=C minor_cov=64/59 new_cov=64/59 polymorphism_frequency=4.862e-01 polymorphism_score=inf prediction=polymorphism ref_cov=59/71 total_cov=123/130 RA 207 . NC_000913 579811 0 C T bias_e_value=2211080 bias_p_value=0.476357 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.5 fisher_strand_p_value=0.222922 frequency=5.484e-01 ks_quality_p_value=0.775633 major_base=T major_cov=61/58 major_frequency=5.484e-01 minor_base=C minor_cov=42/56 new_cov=61/58 polymorphism_frequency=5.484e-01 polymorphism_score=313.6 prediction=polymorphism ref_cov=42/56 total_cov=103/114 RA 208 . NC_000913 580020 0 G A bias_e_value=4511370 bias_p_value=0.971932 consensus_reject=FREQUENCY_CUTOFF consensus_score=104.5 fisher_strand_p_value=0.772623 frequency=5.677e-01 ks_quality_p_value=1 major_base=A major_cov=55/54 major_frequency=5.677e-01 minor_base=G minor_cov=40/43 new_cov=55/54 polymorphism_frequency=5.677e-01 polymorphism_score=244.6 prediction=polymorphism ref_cov=40/43 total_cov=95/98 RA 209 . NC_000913 580115 0 C T bias_e_value=4608160 bias_p_value=0.992784 consensus_reject=FREQUENCY_CUTOFF consensus_score=129.8 fisher_strand_p_value=0.882298 frequency=5.873e-01 ks_quality_p_value=1 major_base=T major_cov=64/47 major_frequency=5.873e-01 minor_base=C minor_cov=44/34 new_cov=64/47 polymorphism_frequency=5.873e-01 polymorphism_score=227.7 prediction=polymorphism ref_cov=44/34 total_cov=108/81 RA 210 . NC_000913 580119 0 A G bias_e_value=4499600 bias_p_value=0.969397 consensus_reject=FREQUENCY_CUTOFF consensus_score=92.4 fisher_strand_p_value=0.765711 frequency=5.722e-01 ks_quality_p_value=0.996496 major_base=G major_cov=63/44 major_frequency=5.722e-01 minor_base=A minor_cov=45/35 new_cov=63/44 polymorphism_frequency=5.722e-01 polymorphism_score=247.0 prediction=polymorphism ref_cov=45/35 total_cov=108/79 RA 211 . NC_000913 580120 0 C T bias_e_value=4504230 bias_p_value=0.970395 consensus_reject=FREQUENCY_CUTOFF consensus_score=114.9 fisher_strand_p_value=0.766751 frequency=5.632e-01 ks_quality_p_value=1 major_base=T major_cov=64/43 major_frequency=5.632e-01 minor_base=C minor_cov=47/36 new_cov=64/43 polymorphism_frequency=5.632e-01 polymorphism_score=234.6 prediction=polymorphism ref_cov=47/36 total_cov=112/79 RA 212 . NC_000913 580302 0 C T bias_e_value=2108790 bias_p_value=0.454318 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.8 fisher_strand_p_value=0.170258 frequency=5.514e-01 ks_quality_p_value=0.943296 major_base=T major_cov=56/62 major_frequency=5.514e-01 minor_base=C minor_cov=55/41 new_cov=56/62 polymorphism_frequency=5.514e-01 polymorphism_score=296.2 prediction=polymorphism ref_cov=55/41 total_cov=111/104 RA 213 . NC_000913 580437 0 A C bias_e_value=1533900 bias_p_value=0.330463 consensus_reject=FREQUENCY_CUTOFF consensus_score=111.0 fisher_strand_p_value=0.106853 frequency=3.690e-01 ks_quality_p_value=0.936699 major_base=A major_cov=50/56 major_frequency=6.310e-01 minor_base=C minor_cov=21/41 new_cov=21/41 polymorphism_frequency=3.690e-01 polymorphism_score=179.3 prediction=polymorphism ref_cov=50/56 total_cov=71/98 RA 214 . NC_000913 580830 0 T A bias_e_value=868358 bias_p_value=0.18708 consensus_reject=FREQUENCY_CUTOFF consensus_score=255.8 fisher_strand_p_value=0.0485996 frequency=3.019e-01 ks_quality_p_value=0.942772 major_base=T major_cov=23/51 major_frequency=6.981e-01 minor_base=A minor_cov=17/15 new_cov=17/15 polymorphism_frequency=3.019e-01 polymorphism_score=119.8 prediction=polymorphism ref_cov=23/51 total_cov=40/68 RA 215 . NC_000913 580831 0 G A bias_e_value=584630 bias_p_value=0.125953 consensus_reject=FREQUENCY_CUTOFF consensus_score=202.5 fisher_strand_p_value=0.030353 frequency=2.963e-01 ks_quality_p_value=0.902613 major_base=G major_cov=23/53 major_frequency=7.037e-01 minor_base=A minor_cov=17/15 new_cov=17/15 polymorphism_frequency=2.963e-01 polymorphism_score=92.5 prediction=polymorphism ref_cov=23/53 total_cov=40/68 RA 216 . NC_000913 581042 0 T G bias_e_value=4461800 bias_p_value=0.961253 consensus_reject=FREQUENCY_CUTOFF consensus_score=99.8 fisher_strand_p_value=0.734864 frequency=4.853e-01 ks_quality_p_value=1 major_base=T major_cov=35/35 major_frequency=5.147e-01 minor_base=G minor_cov=35/31 new_cov=35/31 polymorphism_frequency=4.853e-01 polymorphism_score=212.7 prediction=polymorphism ref_cov=35/35 total_cov=71/66 RA 217 . NC_000913 581056 0 A G bias_e_value=4589370 bias_p_value=0.988736 consensus_reject=FREQUENCY_CUTOFF consensus_score=120.2 fisher_strand_p_value=0.861561 frequency=4.615e-01 ks_quality_p_value=0.990884 major_base=A major_cov=36/34 major_frequency=5.385e-01 minor_base=G minor_cov=32/28 new_cov=32/28 polymorphism_frequency=4.615e-01 polymorphism_score=183.9 prediction=polymorphism ref_cov=36/34 total_cov=68/62 RA 218 . NC_000913 581073 0 G A bias_e_value=4638760 bias_p_value=0.999377 consensus_reject=FREQUENCY_CUTOFF consensus_score=123.3 fisher_strand_p_value=1 frequency=4.375e-01 ks_quality_p_value=0.964916 major_base=G major_cov=38/34 major_frequency=5.625e-01 minor_base=A minor_cov=30/26 new_cov=30/26 polymorphism_frequency=4.375e-01 polymorphism_score=164.8 prediction=polymorphism ref_cov=38/34 total_cov=68/60 RA 219 . NC_000913 581118 0 T C bias_e_value=2260950 bias_p_value=0.487101 consensus_reject=FREQUENCY_CUTOFF consensus_score=83.8 fisher_strand_p_value=0.201431 frequency=4.672e-01 ks_quality_p_value=0.889088 major_base=T major_cov=41/24 major_frequency=5.328e-01 minor_base=C minor_cov=29/28 new_cov=29/28 polymorphism_frequency=4.672e-01 polymorphism_score=170.7 prediction=polymorphism ref_cov=41/24 total_cov=72/52 RA 220 . NC_000913 581127 0 G A bias_e_value=1952220 bias_p_value=0.420587 consensus_reject=FREQUENCY_CUTOFF consensus_score=64.2 fisher_strand_p_value=0.202793 frequency=4.758e-01 ks_quality_p_value=0.703795 major_base=G major_cov=42/23 major_frequency=5.242e-01 minor_base=A minor_cov=31/28 new_cov=31/28 polymorphism_frequency=4.758e-01 polymorphism_score=189.8 prediction=polymorphism ref_cov=42/23 total_cov=73/51 RA 221 . NC_000913 581133 0 A G bias_e_value=3442300 bias_p_value=0.74161 consensus_reject=FREQUENCY_CUTOFF consensus_score=40.9 fisher_strand_p_value=0.373778 frequency=5.079e-01 ks_quality_p_value=1 major_base=G major_cov=34/30 major_frequency=5.079e-01 minor_base=A minor_cov=38/24 new_cov=34/30 polymorphism_frequency=5.079e-01 polymorphism_score=197.0 prediction=polymorphism ref_cov=38/24 total_cov=72/54 RA 222 . NC_000913 581185 0 C T bias_e_value=4280140 bias_p_value=0.922115 consensus_reject=FREQUENCY_CUTOFF consensus_score=12.2 fisher_strand_p_value=0.713857 frequency=5.122e-01 ks_quality_p_value=0.885671 major_base=T major_cov=36/27 major_frequency=5.122e-01 minor_base=C minor_cov=37/23 new_cov=36/27 polymorphism_frequency=5.122e-01 polymorphism_score=192.4 prediction=polymorphism ref_cov=37/23 total_cov=73/51 RA 223 . NC_000913 581227 0 A C bias_e_value=3711440 bias_p_value=0.799595 consensus_reject=FREQUENCY_CUTOFF consensus_score=14.8 fisher_strand_p_value=0.457455 frequency=5.172e-01 ks_quality_p_value=0.957498 major_base=C major_cov=27/33 major_frequency=5.172e-01 minor_base=A minor_cov=30/26 new_cov=27/33 polymorphism_frequency=5.172e-01 polymorphism_score=146.3 prediction=polymorphism ref_cov=30/26 total_cov=57/59 RA 224 . NC_000913 690948 0 G A consensus_score=227.3 frequency=1 major_base=A major_cov=28/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/37 RA 225 . NC_000913 700038 0 G A consensus_score=241.6 frequency=1 major_base=A major_cov=38/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/32 RA 226 . NC_000913 791688 0 G A consensus_score=254.2 frequency=1 major_base=A major_cov=37/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/37 RA 227 . NC_000913 807343 0 C G bias_e_value=4206870 bias_p_value=0.90633 consensus_reject=FREQUENCY_CUTOFF consensus_score=13.6 fisher_strand_p_value=1 frequency=3.125e-01 ks_quality_p_value=0.599677 major_base=C major_cov=3/8 major_frequency=6.875e-01 minor_base=G minor_cov=2/3 new_cov=2/3 polymorphism_frequency=3.125e-01 polymorphism_score=13.7 prediction=polymorphism ref_cov=3/8 total_cov=5/11 RA 228 . NC_000913 809217 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=203.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=37/25 major_frequency=9.841e-01 minor_base=C minor_cov=1/0 new_cov=37/25 polymorphism_frequency=9.841e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=38/25 RA 229 . NC_000913 809218 0 A G consensus_score=228.4 frequency=1 major_base=G major_cov=38/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/25 RA 230 . NC_000913 834674 0 C A bias_e_value=5.76194 bias_p_value=1.24135e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=131.7 fisher_strand_p_value=7.11004e-08 frequency=3.214e-01 ks_quality_p_value=1 major_base=C major_cov=21/36 major_frequency=6.786e-01 minor_base=A minor_cov=26/1 new_cov=26/1 polymorphism_frequency=3.214e-01 polymorphism_score=10.2 prediction=polymorphism ref_cov=21/36 total_cov=47/37 RA 231 . NC_000913 847955 0 G A bias_e_value=0.00186271 bias_p_value=4.01303e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=195.6 fisher_strand_p_value=1.55002e-11 frequency=2.846e-01 ks_quality_p_value=1 major_base=G major_cov=54/34 major_frequency=7.154e-01 minor_base=A minor_cov=0/35 new_cov=0/35 polymorphism_frequency=2.846e-01 polymorphism_score=36.4 prediction=polymorphism ref_cov=54/34 total_cov=54/69 RA 232 . NC_000913 968837 0 G A consensus_score=238.0 frequency=1 major_base=A major_cov=36/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/33 RA 233 . NC_000913 1040126 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=277.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=39/40 major_frequency=9.875e-01 minor_base=G minor_cov=0/1 new_cov=39/40 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=39/41 RA 234 . NC_000913 1061935 0 G A consensus_score=258.9 frequency=1 major_base=A major_cov=41/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/35 RA 235 . NC_000913 1100070 0 G A consensus_score=222.7 frequency=1 major_base=A major_cov=33/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/29 RA 236 . NC_000913 1111727 0 C T consensus_score=254.1 frequency=1 major_base=T major_cov=35/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/38 RA 237 . NC_000913 1111728 0 C T consensus_score=261.6 frequency=1 major_base=T major_cov=35/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/38 RA 238 . NC_000913 1123556 0 C T consensus_score=261.2 frequency=1 major_base=T major_cov=37/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/39 RA 239 . NC_000913 1169836 0 A G consensus_score=248.6 frequency=1 major_base=G major_cov=31/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/36 RA 240 . NC_000913 1189980 0 A G consensus_score=290.2 frequency=1 major_base=G major_cov=52/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/26 RA 241 . NC_000913 1196220 0 C T consensus_score=203.4 frequency=1 major_base=T major_cov=35/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/35 RA 242 . NC_000913 1196232 0 C T consensus_score=191.3 frequency=1 major_base=T major_cov=34/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/31 RA 243 . NC_000913 1196245 0 T C consensus_score=194.6 frequency=1 major_base=C major_cov=34/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/30 RA 244 . NC_000913 1196247 0 A G consensus_score=193.5 frequency=1 major_base=G major_cov=34/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/30 RA 245 . NC_000913 1196277 0 C T consensus_score=118.2 frequency=1 major_base=T major_cov=23/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/23 RA 246 . NC_000913 1196280 0 G C consensus_score=124.5 frequency=1 major_base=C major_cov=23/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/23 RA 247 . NC_000913 1196283 0 A G consensus_score=125.9 frequency=1 major_base=G major_cov=23/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/23 RA 248 . NC_000913 1196292 0 C T consensus_score=114.8 frequency=1 major_base=T major_cov=23/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/21 RA 249 . NC_000913 1196304 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=98.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=18/20 major_frequency=9.744e-01 minor_base=G minor_cov=0/1 new_cov=18/20 polymorphism_frequency=9.744e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=18/21 RA 250 . NC_000913 1196316 0 T A consensus_score=76.6 frequency=1 major_base=A major_cov=17/16 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=17/16 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/16 RA 251 . NC_000913 1196325 0 A G consensus_score=65.4 frequency=1 major_base=G major_cov=16/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/12 RA 252 . NC_000913 1196352 0 C A consensus_score=36.7 deleted=1 frequency=1 major_base=A major_cov=13/6 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/6 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/6 RA 253 . NC_000913 1301992 0 A T consensus_score=293.0 frequency=1 major_base=T major_cov=39/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/49 RA 254 . NC_000913 1306736 0 T G bias_e_value=3769490 bias_p_value=0.8121 consensus_score=310.0 fisher_strand_p_value=0.453488 frequency=1 ks_quality_p_value=1 major_base=G major_cov=47/38 major_frequency=9.884e-01 minor_base=T minor_cov=0/1 new_cov=47/38 polymorphism_frequency=9.884e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=47/39 RA 255 . NC_000913 1310770 0 A G consensus_score=399.8 frequency=1 major_base=G major_cov=68/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=68/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=68/38 RA 256 . NC_000913 1331947 0 C T consensus_score=287.5 frequency=1 major_base=T major_cov=38/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/46 RA 257 . NC_000913 1334966 0 A C bias_e_value=0.000364669 bias_p_value=7.85646e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=264.9 fisher_strand_p_value=2.84816e-12 frequency=2.534e-01 ks_quality_p_value=1 major_base=A major_cov=44/65 major_frequency=7.466e-01 minor_base=C minor_cov=37/0 new_cov=37/0 polymorphism_frequency=2.534e-01 polymorphism_score=20.8 prediction=polymorphism ref_cov=44/65 total_cov=81/65 RA 258 . NC_000913 1337394 0 A G bias_e_value=1998440 bias_p_value=0.430545 consensus_score=257.9 fisher_strand_p_value=0.147887 frequency=1 ks_quality_p_value=1 major_base=G major_cov=44/26 major_frequency=9.722e-01 minor_base=T minor_cov=0/2 new_cov=44/26 polymorphism_frequency=9.722e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/28 RA 259 . NC_000913 1351463 0 C A bias_e_value=39922.5 bias_p_value=0.00860092 consensus_reject=FREQUENCY_CUTOFF consensus_score=65.8 fisher_strand_p_value=0.00110106 frequency=3.387e-01 ks_quality_p_value=1 major_base=C major_cov=26/15 major_frequency=6.613e-01 minor_base=A minor_cov=21/0 new_cov=21/0 polymorphism_frequency=3.387e-01 polymorphism_score=10.4 prediction=polymorphism ref_cov=26/15 total_cov=47/15 RA 260 . NC_000913 1357202 0 C T consensus_score=251.7 frequency=1 major_base=T major_cov=46/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/32 RA 261 . NC_000913 1358859 0 T C consensus_score=228.7 frequency=1 major_base=C major_cov=32/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/30 RA 262 . NC_000913 1412897 0 G A consensus_score=370.3 frequency=1 major_base=A major_cov=63/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=63/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=63/42 RA 263 . NC_000913 1423272 0 C T bias_e_value=3735040 bias_p_value=0.804679 consensus_reject=FREQUENCY_CUTOFF consensus_score=182.3 fisher_strand_p_value=0.444224 frequency=2.593e-01 ks_quality_p_value=1 major_base=C major_cov=33/27 major_frequency=7.407e-01 minor_base=T minor_cov=14/7 new_cov=14/7 polymorphism_frequency=2.593e-01 polymorphism_score=53.2 prediction=polymorphism ref_cov=33/27 total_cov=48/34 RA 264 . NC_000913 1423273 0 G A bias_e_value=4183650 bias_p_value=0.901328 consensus_reject=FREQUENCY_CUTOFF consensus_score=181.6 fisher_strand_p_value=0.60838 frequency=2.410e-01 ks_quality_p_value=0.969865 major_base=G major_cov=36/27 major_frequency=7.590e-01 minor_base=A minor_cov=13/7 new_cov=13/7 polymorphism_frequency=2.410e-01 polymorphism_score=50.8 prediction=polymorphism ref_cov=36/27 total_cov=49/34 RA 265 . NC_000913 1423283 0 A C bias_e_value=4477620 bias_p_value=0.964662 consensus_reject=FREQUENCY_CUTOFF consensus_score=178.8 fisher_strand_p_value=0.796986 frequency=2.414e-01 ks_quality_p_value=0.936289 major_base=A major_cov=40/26 major_frequency=7.586e-01 minor_base=C minor_cov=14/7 new_cov=14/7 polymorphism_frequency=2.414e-01 polymorphism_score=59.7 prediction=polymorphism ref_cov=40/26 total_cov=55/33 RA 266 . NC_000913 1423284 0 A C bias_e_value=4531600 bias_p_value=0.976291 consensus_reject=FREQUENCY_CUTOFF consensus_score=175.7 fisher_strand_p_value=0.799518 frequency=2.299e-01 ks_quality_p_value=0.98847 major_base=A major_cov=41/26 major_frequency=7.701e-01 minor_base=C minor_cov=13/7 new_cov=13/7 polymorphism_frequency=2.299e-01 polymorphism_score=51.8 prediction=polymorphism ref_cov=41/26 total_cov=55/33 RA 267 . NC_000913 1423338 0 G C bias_e_value=3768650 bias_p_value=0.811921 consensus_reject=FREQUENCY_CUTOFF consensus_score=237.4 fisher_strand_p_value=0.453261 frequency=2.360e-01 ks_quality_p_value=1 major_base=G major_cov=38/30 major_frequency=7.640e-01 minor_base=C minor_cov=14/7 new_cov=14/7 polymorphism_frequency=2.360e-01 polymorphism_score=64.7 prediction=polymorphism ref_cov=38/30 total_cov=52/37 RA 268 . NC_000913 1423404 0 G T bias_e_value=4259560 bias_p_value=0.917682 consensus_reject=FREQUENCY_CUTOFF consensus_score=222.0 fisher_strand_p_value=0.622731 frequency=2.444e-01 ks_quality_p_value=1 major_base=G major_cov=38/30 major_frequency=7.556e-01 minor_base=T minor_cov=14/8 new_cov=14/8 polymorphism_frequency=2.444e-01 polymorphism_score=51.4 prediction=polymorphism ref_cov=38/30 total_cov=52/38 RA 269 . NC_000913 1428087 0 C T consensus_score=201.4 frequency=1 major_base=T major_cov=24/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/39 RA 270 . NC_000913 1428945 0 C T bias_e_value=233654 bias_p_value=0.0503385 consensus_reject=FREQUENCY_CUTOFF consensus_score=182.2 fisher_strand_p_value=0.00877635 frequency=2.421e-01 ks_quality_p_value=1 major_base=C major_cov=28/44 major_frequency=7.579e-01 minor_base=T minor_cov=2/21 new_cov=2/21 polymorphism_frequency=2.421e-01 polymorphism_score=55.2 prediction=polymorphism ref_cov=28/44 total_cov=30/66 RA 271 . NC_000913 1428954 0 T A bias_e_value=89852.8 bias_p_value=0.0193579 consensus_reject=FREQUENCY_CUTOFF consensus_score=224.7 fisher_strand_p_value=0.00289484 frequency=2.525e-01 ks_quality_p_value=0.973069 major_base=T major_cov=29/45 major_frequency=7.475e-01 minor_base=A minor_cov=2/23 new_cov=2/23 polymorphism_frequency=2.525e-01 polymorphism_score=91.0 prediction=polymorphism ref_cov=29/45 total_cov=31/68 RA 272 . NC_000913 1428963 0 G T bias_e_value=254799 bias_p_value=0.0548939 consensus_reject=FREQUENCY_CUTOFF consensus_score=220.1 fisher_strand_p_value=0.00974929 frequency=2.323e-01 ks_quality_p_value=1 major_base=G major_cov=28/48 major_frequency=7.677e-01 minor_base=T minor_cov=2/21 new_cov=2/21 polymorphism_frequency=2.323e-01 polymorphism_score=44.7 prediction=polymorphism ref_cov=28/48 total_cov=30/69 RA 273 . NC_000913 1428966 0 T G bias_e_value=235983 bias_p_value=0.0508404 consensus_reject=FREQUENCY_CUTOFF consensus_score=175.1 fisher_strand_p_value=0.00888247 frequency=2.396e-01 ks_quality_p_value=1 major_base=T major_cov=28/45 major_frequency=7.604e-01 minor_base=G minor_cov=2/21 new_cov=2/21 polymorphism_frequency=2.396e-01 polymorphism_score=54.0 prediction=polymorphism ref_cov=28/45 total_cov=30/69 RA 274 . NC_000913 1428978 0 G A bias_e_value=148027 bias_p_value=0.031891 consensus_reject=FREQUENCY_CUTOFF consensus_score=170.1 fisher_strand_p_value=0.00511214 frequency=2.626e-01 ks_quality_p_value=0.992831 major_base=G major_cov=27/46 major_frequency=7.374e-01 minor_base=A minor_cov=2/24 new_cov=2/24 polymorphism_frequency=2.626e-01 polymorphism_score=68.5 prediction=polymorphism ref_cov=27/46 total_cov=29/70 RA 275 . NC_000913 1429021 0 T A bias_e_value=895710 bias_p_value=0.192972 consensus_reject=FREQUENCY_CUTOFF consensus_score=135.3 fisher_strand_p_value=0.0477426 frequency=3.505e-01 ks_quality_p_value=1 major_base=T major_cov=29/34 major_frequency=6.495e-01 minor_base=A minor_cov=8/26 new_cov=8/26 polymorphism_frequency=3.505e-01 polymorphism_score=129.7 prediction=polymorphism ref_cov=29/34 total_cov=37/60 RA 276 . NC_000913 1429022 0 T A bias_e_value=766588 bias_p_value=0.165154 consensus_reject=FREQUENCY_CUTOFF consensus_score=128.6 fisher_strand_p_value=0.0477426 frequency=3.505e-01 ks_quality_p_value=0.814497 major_base=T major_cov=29/34 major_frequency=6.495e-01 minor_base=A minor_cov=8/26 new_cov=8/26 polymorphism_frequency=3.505e-01 polymorphism_score=131.2 prediction=polymorphism ref_cov=29/34 total_cov=37/60 RA 277 . NC_000913 1429024 0 A C bias_e_value=621231 bias_p_value=0.133838 consensus_reject=FREQUENCY_CUTOFF consensus_score=64.5 fisher_strand_p_value=0.0296133 frequency=3.617e-01 ks_quality_p_value=1 major_base=A major_cov=28/32 major_frequency=6.383e-01 minor_base=C minor_cov=8/26 new_cov=8/26 polymorphism_frequency=3.617e-01 polymorphism_score=106.5 prediction=polymorphism ref_cov=28/32 total_cov=37/58 RA 278 . NC_000913 1429027 0 C T bias_e_value=950206 bias_p_value=0.204713 consensus_reject=FREQUENCY_CUTOFF consensus_score=89.0 fisher_strand_p_value=0.0516534 frequency=3.684e-01 ks_quality_p_value=1 major_base=C major_cov=28/32 major_frequency=6.316e-01 minor_base=T minor_cov=9/26 new_cov=9/26 polymorphism_frequency=3.684e-01 polymorphism_score=97.1 prediction=polymorphism ref_cov=28/32 total_cov=37/58 RA 279 . NC_000913 1429069 0 T A bias_e_value=1038870 bias_p_value=0.223814 consensus_reject=FREQUENCY_CUTOFF consensus_score=84.2 fisher_strand_p_value=0.0582355 frequency=4.082e-01 ks_quality_p_value=1 major_base=T major_cov=28/30 major_frequency=5.918e-01 minor_base=A minor_cov=11/29 new_cov=11/29 polymorphism_frequency=4.082e-01 polymorphism_score=157.0 prediction=polymorphism ref_cov=28/30 total_cov=39/59 RA 280 . NC_000913 1429072 0 A C bias_e_value=1916530 bias_p_value=0.412898 consensus_reject=FREQUENCY_CUTOFF consensus_score=15.6 fisher_strand_p_value=0.138803 frequency=4.271e-01 ks_quality_p_value=1 major_base=A major_cov=25/30 major_frequency=5.729e-01 minor_base=C minor_cov=12/29 new_cov=12/29 polymorphism_frequency=4.271e-01 polymorphism_score=129.2 prediction=polymorphism ref_cov=25/30 total_cov=37/59 RA 281 . NC_000913 1429111 0 A C bias_e_value=1454480 bias_p_value=0.313353 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=5.8 fisher_strand_p_value=0.161215 frequency=4.623e-01 ks_quality_p_value=0.57547 major_base=A major_cov=26/31 major_frequency=5.377e-01 minor_base=C minor_cov=15/34 new_cov=15/34 polymorphism_frequency=4.623e-01 polymorphism_score=166.3 prediction=polymorphism ref_cov=26/31 total_cov=41/65 RA 282 . NC_000913 1429114 0 C T bias_e_value=2084520 bias_p_value=0.449089 consensus_reject=FREQUENCY_CUTOFF consensus_score=26.9 fisher_strand_p_value=0.157758 frequency=4.554e-01 ks_quality_p_value=1 major_base=C major_cov=26/29 major_frequency=5.446e-01 minor_base=T minor_cov=15/31 new_cov=15/31 polymorphism_frequency=4.554e-01 polymorphism_score=141.2 prediction=polymorphism ref_cov=26/29 total_cov=41/63 RA 283 . NC_000913 1429126 0 A C bias_e_value=4061610 bias_p_value=0.875034 consensus_reject=FREQUENCY_CUTOFF consensus_score=33.0 fisher_strand_p_value=0.543744 frequency=5.000e-01 ks_quality_p_value=1 major_base=C major_cov=17/36 major_frequency=5.000e-01 minor_base=A minor_cov=21/32 new_cov=17/36 polymorphism_frequency=5.000e-01 polymorphism_score=132.9 prediction=polymorphism ref_cov=21/32 total_cov=38/68 RA 284 . NC_000913 1429128 0 A G bias_e_value=3323960 bias_p_value=0.716116 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-3.8 fisher_strand_p_value=0.54597 frequency=4.904e-01 ks_quality_p_value=0.63876 major_base=A major_cov=21/32 major_frequency=5.096e-01 minor_base=G minor_cov=17/34 new_cov=17/34 polymorphism_frequency=4.904e-01 polymorphism_score=165.5 prediction=polymorphism ref_cov=21/32 total_cov=38/68 RA 285 . NC_000913 1429160 0 C G bias_e_value=3050890 bias_p_value=0.657285 consensus_reject=FREQUENCY_CUTOFF consensus_score=30.7 fisher_strand_p_value=0.321911 frequency=5.514e-01 ks_quality_p_value=0.921898 major_base=G major_cov=19/40 major_frequency=5.514e-01 minor_base=C minor_cov=20/28 new_cov=19/40 polymorphism_frequency=5.514e-01 polymorphism_score=177.9 prediction=polymorphism ref_cov=20/28 total_cov=39/70 RA 286 . NC_000913 1429164 0 C G bias_e_value=3672970 bias_p_value=0.791306 consensus_reject=FREQUENCY_CUTOFF consensus_score=29.6 fisher_strand_p_value=0.428108 frequency=5.413e-01 ks_quality_p_value=1 major_base=G major_cov=19/40 major_frequency=5.413e-01 minor_base=C minor_cov=20/30 new_cov=19/40 polymorphism_frequency=5.413e-01 polymorphism_score=182.9 prediction=polymorphism ref_cov=20/30 total_cov=39/71 RA 287 . NC_000913 1429171 0 A G bias_e_value=4075250 bias_p_value=0.877974 consensus_reject=FREQUENCY_CUTOFF consensus_score=40.4 fisher_strand_p_value=0.55354 frequency=5.487e-01 ks_quality_p_value=0.991084 major_base=G major_cov=20/42 major_frequency=5.487e-01 minor_base=A minor_cov=20/31 new_cov=20/42 polymorphism_frequency=5.487e-01 polymorphism_score=150.3 prediction=polymorphism ref_cov=20/31 total_cov=40/73 RA 288 . NC_000913 1429204 0 C T bias_e_value=4385200 bias_p_value=0.944751 consensus_reject=FREQUENCY_CUTOFF consensus_score=49.7 fisher_strand_p_value=0.686565 frequency=5.472e-01 ks_quality_p_value=1 major_base=T major_cov=20/38 major_frequency=5.472e-01 minor_base=C minor_cov=19/29 new_cov=20/38 polymorphism_frequency=5.472e-01 polymorphism_score=132.3 prediction=polymorphism ref_cov=19/29 total_cov=39/67 RA 289 . NC_000913 1429207 0 T G bias_e_value=4056440 bias_p_value=0.873922 consensus_reject=FREQUENCY_CUTOFF consensus_score=61.6 fisher_strand_p_value=0.541923 frequency=5.619e-01 ks_quality_p_value=1 major_base=G major_cov=20/39 major_frequency=5.619e-01 minor_base=T minor_cov=19/27 new_cov=20/39 polymorphism_frequency=5.619e-01 polymorphism_score=128.9 prediction=polymorphism ref_cov=19/27 total_cov=39/67 RA 290 . NC_000913 1429225 0 C T bias_e_value=2939810 bias_p_value=0.633355 consensus_reject=FREQUENCY_CUTOFF consensus_score=21.9 fisher_strand_p_value=1 frequency=4.198e-01 ks_quality_p_value=0.277592 major_base=C major_cov=24/23 major_frequency=5.802e-01 minor_base=T minor_cov=17/17 new_cov=17/17 polymorphism_frequency=4.198e-01 polymorphism_score=101.9 prediction=polymorphism ref_cov=24/23 total_cov=41/40 RA 291 . NC_000913 1429228 0 T C bias_e_value=4000490 bias_p_value=0.861868 consensus_reject=FREQUENCY_CUTOFF consensus_score=25.1 fisher_strand_p_value=0.822384 frequency=4.430e-01 ks_quality_p_value=0.635718 major_base=T major_cov=23/21 major_frequency=5.570e-01 minor_base=C minor_cov=17/18 new_cov=17/18 polymorphism_frequency=4.430e-01 polymorphism_score=108.4 prediction=polymorphism ref_cov=23/21 total_cov=40/40 RA 292 . NC_000913 1429231 0 T C bias_e_value=3104900 bias_p_value=0.668922 consensus_reject=FREQUENCY_CUTOFF consensus_score=23.2 fisher_strand_p_value=1 frequency=4.250e-01 ks_quality_p_value=0.306478 major_base=T major_cov=23/23 major_frequency=5.750e-01 minor_base=C minor_cov=17/17 new_cov=17/17 polymorphism_frequency=4.250e-01 polymorphism_score=105.9 prediction=polymorphism ref_cov=23/23 total_cov=40/40 RA 293 . NC_000913 1429235 0 T C bias_e_value=3264310 bias_p_value=0.703264 consensus_reject=FREQUENCY_CUTOFF consensus_score=14.9 fisher_strand_p_value=1 frequency=4.359e-01 ks_quality_p_value=0.336741 major_base=T major_cov=23/21 major_frequency=5.641e-01 minor_base=C minor_cov=17/17 new_cov=17/17 polymorphism_frequency=4.359e-01 polymorphism_score=104.0 prediction=polymorphism ref_cov=23/21 total_cov=40/38 RA 294 . NC_000913 1429236 0 T A bias_e_value=3264310 bias_p_value=0.703264 consensus_reject=FREQUENCY_CUTOFF consensus_score=37.1 fisher_strand_p_value=1 frequency=4.359e-01 ks_quality_p_value=0.336741 major_base=T major_cov=23/21 major_frequency=5.641e-01 minor_base=A minor_cov=17/17 new_cov=17/17 polymorphism_frequency=4.359e-01 polymorphism_score=133.5 prediction=polymorphism ref_cov=23/21 total_cov=40/39 RA 295 . NC_000913 1429240 0 G T bias_e_value=3751520 bias_p_value=0.80823 consensus_reject=FREQUENCY_CUTOFF consensus_score=25.3 fisher_strand_p_value=0.822384 frequency=4.430e-01 ks_quality_p_value=0.545519 major_base=G major_cov=23/21 major_frequency=5.570e-01 minor_base=T minor_cov=17/18 new_cov=17/18 polymorphism_frequency=4.430e-01 polymorphism_score=104.3 prediction=polymorphism ref_cov=23/21 total_cov=40/39 RA 296 . NC_000913 1429243 0 A C bias_e_value=4289960 bias_p_value=0.92423 consensus_reject=FREQUENCY_CUTOFF consensus_score=11.5 fisher_strand_p_value=1 frequency=4.250e-01 ks_quality_p_value=0.636895 major_base=A major_cov=23/23 major_frequency=5.750e-01 minor_base=C minor_cov=17/17 new_cov=17/17 polymorphism_frequency=4.250e-01 polymorphism_score=104.7 prediction=polymorphism ref_cov=23/23 total_cov=40/40 RA 297 . NC_000913 1429246 0 A T bias_e_value=1996480 bias_p_value=0.430123 consensus_reject=FREQUENCY_CUTOFF consensus_score=39.8 fisher_strand_p_value=1 frequency=4.304e-01 ks_quality_p_value=0.147667 major_base=A major_cov=23/22 major_frequency=5.696e-01 minor_base=T minor_cov=17/17 new_cov=17/17 polymorphism_frequency=4.304e-01 polymorphism_score=137.1 prediction=polymorphism ref_cov=23/22 total_cov=40/39 RA 298 . NC_000913 1429249 0 C T bias_e_value=2974770 bias_p_value=0.640886 consensus_reject=FREQUENCY_CUTOFF consensus_score=12.5 fisher_strand_p_value=1 frequency=4.487e-01 ks_quality_p_value=0.283517 major_base=C major_cov=22/21 major_frequency=5.513e-01 minor_base=T minor_cov=17/18 new_cov=17/18 polymorphism_frequency=4.487e-01 polymorphism_score=108.3 prediction=polymorphism ref_cov=22/21 total_cov=39/39 RA 299 . NC_000913 1429252 0 G A bias_e_value=3488600 bias_p_value=0.751586 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=8.9 fisher_strand_p_value=1 frequency=4.487e-01 ks_quality_p_value=0.384057 major_base=G major_cov=22/21 major_frequency=5.513e-01 minor_base=A minor_cov=17/18 new_cov=17/18 polymorphism_frequency=4.487e-01 polymorphism_score=107.7 prediction=polymorphism ref_cov=22/21 total_cov=39/39 RA 300 . NC_000913 1429255 0 G A bias_e_value=2643130 bias_p_value=0.569437 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=8.3 fisher_strand_p_value=1 frequency=4.474e-01 ks_quality_p_value=0.230962 major_base=G major_cov=22/20 major_frequency=5.526e-01 minor_base=A minor_cov=17/17 new_cov=17/17 polymorphism_frequency=4.474e-01 polymorphism_score=99.4 prediction=polymorphism ref_cov=22/20 total_cov=39/39 RA 301 . NC_000913 1429258 0 A G bias_e_value=4577980 bias_p_value=0.986282 consensus_reject=FREQUENCY_CUTOFF consensus_score=28.7 fisher_strand_p_value=1 frequency=4.304e-01 ks_quality_p_value=0.839001 major_base=A major_cov=23/22 major_frequency=5.696e-01 minor_base=G minor_cov=17/17 new_cov=17/17 polymorphism_frequency=4.304e-01 polymorphism_score=99.6 prediction=polymorphism ref_cov=23/22 total_cov=40/39 RA 302 . NC_000913 1429261 0 T C bias_e_value=4373620 bias_p_value=0.942255 consensus_reject=FREQUENCY_CUTOFF consensus_score=21.0 fisher_strand_p_value=1 frequency=4.359e-01 ks_quality_p_value=0.680013 major_base=T major_cov=23/21 major_frequency=5.641e-01 minor_base=C minor_cov=17/17 new_cov=17/17 polymorphism_frequency=4.359e-01 polymorphism_score=103.2 prediction=polymorphism ref_cov=23/21 total_cov=40/40 RA 303 . NC_000913 1429273 0 T C bias_e_value=4604250 bias_p_value=0.991943 consensus_reject=FREQUENCY_CUTOFF consensus_score=24.9 fisher_strand_p_value=1 frequency=4.419e-01 ks_quality_p_value=0.875772 major_base=T major_cov=23/25 major_frequency=5.581e-01 minor_base=C minor_cov=19/19 new_cov=19/19 polymorphism_frequency=4.419e-01 polymorphism_score=112.4 prediction=polymorphism ref_cov=23/25 total_cov=42/44 RA 304 . NC_000913 1429291 0 T A bias_e_value=4000930 bias_p_value=0.861963 consensus_reject=FREQUENCY_CUTOFF consensus_score=57.6 fisher_strand_p_value=1 frequency=4.186e-01 ks_quality_p_value=0.52295 major_base=T major_cov=22/28 major_frequency=5.814e-01 minor_base=A minor_cov=16/20 new_cov=16/20 polymorphism_frequency=4.186e-01 polymorphism_score=139.6 prediction=polymorphism ref_cov=22/28 total_cov=38/48 RA 305 . NC_000913 1429297 0 C G bias_e_value=4276970 bias_p_value=0.921434 consensus_reject=FREQUENCY_CUTOFF consensus_score=49.9 fisher_strand_p_value=0.822287 frequency=4.198e-01 ks_quality_p_value=0.767082 major_base=C major_cov=21/26 major_frequency=5.802e-01 minor_base=G minor_cov=14/20 new_cov=14/20 polymorphism_frequency=4.198e-01 polymorphism_score=113.2 prediction=polymorphism ref_cov=21/26 total_cov=35/47 RA 306 . NC_000913 1429300 0 T G bias_e_value=4566180 bias_p_value=0.983741 consensus_reject=FREQUENCY_CUTOFF consensus_score=42.4 fisher_strand_p_value=1 frequency=4.000e-01 ks_quality_p_value=0.825177 major_base=T major_cov=21/30 major_frequency=6.000e-01 minor_base=G minor_cov=14/20 new_cov=14/20 polymorphism_frequency=4.000e-01 polymorphism_score=109.6 prediction=polymorphism ref_cov=21/30 total_cov=35/50 RA 307 . NC_000913 1429319 0 G T bias_e_value=4466160 bias_p_value=0.962192 consensus_reject=FREQUENCY_CUTOFF consensus_score=62.5 fisher_strand_p_value=1 frequency=3.953e-01 ks_quality_p_value=0.737932 major_base=G major_cov=21/31 major_frequency=6.047e-01 minor_base=T minor_cov=14/20 new_cov=14/20 polymorphism_frequency=3.953e-01 polymorphism_score=99.2 prediction=polymorphism ref_cov=21/31 total_cov=35/51 RA 308 . NC_000913 1429345 0 T G bias_e_value=3293710 bias_p_value=0.709599 consensus_reject=FREQUENCY_CUTOFF consensus_score=50.3 fisher_strand_p_value=0.646735 frequency=3.765e-01 ks_quality_p_value=0.52975 major_base=T major_cov=22/31 major_frequency=6.235e-01 minor_base=G minor_cov=11/21 new_cov=11/21 polymorphism_frequency=3.765e-01 polymorphism_score=100.6 prediction=polymorphism ref_cov=22/31 total_cov=33/52 RA 309 . NC_000913 1429353 0 C T bias_e_value=3555140 bias_p_value=0.765921 consensus_reject=FREQUENCY_CUTOFF consensus_score=57.0 fisher_strand_p_value=0.647525 frequency=3.780e-01 ks_quality_p_value=0.616735 major_base=C major_cov=21/30 major_frequency=6.220e-01 minor_base=T minor_cov=11/20 new_cov=11/20 polymorphism_frequency=3.780e-01 polymorphism_score=93.5 prediction=polymorphism ref_cov=21/30 total_cov=33/50 RA 310 . NC_000913 1429354 0 A G bias_e_value=2814230 bias_p_value=0.6063 consensus_reject=FREQUENCY_CUTOFF consensus_score=66.1 fisher_strand_p_value=0.644702 frequency=3.735e-01 ks_quality_p_value=0.39877 major_base=A major_cov=22/30 major_frequency=6.265e-01 minor_base=G minor_cov=11/20 new_cov=11/20 polymorphism_frequency=3.735e-01 polymorphism_score=92.5 prediction=polymorphism ref_cov=22/30 total_cov=33/50 RA 311 . NC_000913 1429360 0 C T bias_e_value=4316820 bias_p_value=0.930018 consensus_reject=FREQUENCY_CUTOFF consensus_score=51.0 fisher_strand_p_value=0.823197 frequency=3.953e-01 ks_quality_p_value=0.789632 major_base=C major_cov=22/30 major_frequency=6.047e-01 minor_base=T minor_cov=13/21 new_cov=13/21 polymorphism_frequency=3.953e-01 polymorphism_score=102.1 prediction=polymorphism ref_cov=22/30 total_cov=35/51 RA 312 . NC_000913 1429364 0 T C bias_e_value=3710980 bias_p_value=0.799495 consensus_reject=FREQUENCY_CUTOFF consensus_score=42.3 fisher_strand_p_value=0.656376 frequency=4.048e-01 ks_quality_p_value=0.667136 major_base=T major_cov=22/28 major_frequency=5.952e-01 minor_base=C minor_cov=13/21 new_cov=13/21 polymorphism_frequency=4.048e-01 polymorphism_score=99.8 prediction=polymorphism ref_cov=22/28 total_cov=35/49 RA 313 . NC_000913 1429404 0 C T bias_e_value=4615550 bias_p_value=0.994377 consensus_reject=FREQUENCY_CUTOFF consensus_score=41.7 fisher_strand_p_value=1 frequency=4.074e-01 ks_quality_p_value=0.895844 major_base=C major_cov=23/25 major_frequency=5.926e-01 minor_base=T minor_cov=15/18 new_cov=15/18 polymorphism_frequency=4.074e-01 polymorphism_score=102.1 prediction=polymorphism ref_cov=23/25 total_cov=38/43 RA 314 . NC_000913 1429416 0 A G bias_e_value=3325840 bias_p_value=0.71652 consensus_reject=FREQUENCY_CUTOFF consensus_score=82.5 fisher_strand_p_value=0.814766 frequency=3.377e-01 ks_quality_p_value=0.428499 major_base=A major_cov=27/24 major_frequency=6.623e-01 minor_base=G minor_cov=13/13 new_cov=13/13 polymorphism_frequency=3.377e-01 polymorphism_score=75.4 prediction=polymorphism ref_cov=27/24 total_cov=40/37 RA 315 . NC_000913 1429417 0 C T bias_e_value=4400110 bias_p_value=0.947963 consensus_reject=FREQUENCY_CUTOFF consensus_score=78.7 fisher_strand_p_value=1 frequency=3.421e-01 ks_quality_p_value=0.695251 major_base=C major_cov=26/24 major_frequency=6.579e-01 minor_base=T minor_cov=13/13 new_cov=13/13 polymorphism_frequency=3.421e-01 polymorphism_score=74.8 prediction=polymorphism ref_cov=26/24 total_cov=40/37 RA 316 . NC_000913 1429425 0 C A bias_e_value=4600750 bias_p_value=0.991189 consensus_reject=FREQUENCY_CUTOFF consensus_score=92.9 fisher_strand_p_value=1 frequency=3.506e-01 ks_quality_p_value=0.87022 major_base=C major_cov=26/24 major_frequency=6.494e-01 minor_base=A minor_cov=14/13 new_cov=14/13 polymorphism_frequency=3.506e-01 polymorphism_score=66.9 prediction=polymorphism ref_cov=26/24 total_cov=40/37 RA 317 . NC_000913 1429435 0 G A bias_e_value=3613490 bias_p_value=0.778493 consensus_reject=FREQUENCY_CUTOFF consensus_score=82.5 fisher_strand_p_value=0.625843 frequency=3.200e-01 ks_quality_p_value=0.660405 major_base=G major_cov=27/24 major_frequency=6.800e-01 minor_base=A minor_cov=11/13 new_cov=11/13 polymorphism_frequency=3.200e-01 polymorphism_score=66.9 prediction=polymorphism ref_cov=27/24 total_cov=38/37 RA 318 . NC_000913 1429442 0 A G bias_e_value=4227010 bias_p_value=0.910669 consensus_reject=FREQUENCY_CUTOFF consensus_score=93.8 fisher_strand_p_value=0.615996 frequency=3.151e-01 ks_quality_p_value=0.987476 major_base=A major_cov=26/24 major_frequency=6.849e-01 minor_base=G minor_cov=10/13 new_cov=10/13 polymorphism_frequency=3.151e-01 polymorphism_score=61.5 prediction=polymorphism ref_cov=26/24 total_cov=36/37 RA 319 . NC_000913 1429444 0 T C bias_e_value=3500180 bias_p_value=0.754081 consensus_reject=FREQUENCY_CUTOFF consensus_score=87.6 fisher_strand_p_value=0.618297 frequency=3.194e-01 ks_quality_p_value=0.625385 major_base=T major_cov=25/24 major_frequency=6.806e-01 minor_base=C minor_cov=10/13 new_cov=10/13 polymorphism_frequency=3.194e-01 polymorphism_score=66.3 prediction=polymorphism ref_cov=25/24 total_cov=35/37 RA 320 . NC_000913 1429453 0 C T bias_e_value=4543510 bias_p_value=0.978857 consensus_reject=FREQUENCY_CUTOFF consensus_score=83.9 fisher_strand_p_value=0.80154 frequency=3.333e-01 ks_quality_p_value=1 major_base=C major_cov=24/22 major_frequency=6.667e-01 minor_base=T minor_cov=11/12 new_cov=11/12 polymorphism_frequency=3.333e-01 polymorphism_score=62.6 prediction=polymorphism ref_cov=24/22 total_cov=36/34 RA 321 . NC_000913 1429454 0 A G bias_e_value=3426470 bias_p_value=0.7382 consensus_reject=FREQUENCY_CUTOFF consensus_score=96.3 fisher_strand_p_value=0.436599 frequency=3.000e-01 ks_quality_p_value=0.848211 major_base=A major_cov=27/22 major_frequency=7.000e-01 minor_base=G minor_cov=9/12 new_cov=9/12 polymorphism_frequency=3.000e-01 polymorphism_score=57.6 prediction=polymorphism ref_cov=27/22 total_cov=36/34 RA 322 . NC_000913 1429462 0 C T bias_e_value=631853 bias_p_value=0.136127 consensus_reject=FREQUENCY_CUTOFF consensus_score=72.1 fisher_strand_p_value=0.775053 frequency=2.787e-01 ks_quality_p_value=0.0390497 major_base=C major_cov=26/18 major_frequency=7.213e-01 minor_base=T minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.787e-01 polymorphism_score=46.9 prediction=polymorphism ref_cov=26/18 total_cov=37/26 RA 323 . NC_000913 1429463 0 C G bias_e_value=3003220 bias_p_value=0.647014 consensus_reject=FREQUENCY_CUTOFF consensus_score=115.3 fisher_strand_p_value=0.773936 frequency=2.742e-01 ks_quality_p_value=0.372657 major_base=C major_cov=27/18 major_frequency=7.258e-01 minor_base=G minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.742e-01 polymorphism_score=51.6 prediction=polymorphism ref_cov=27/18 total_cov=37/26 RA 324 . NC_000913 1429464 0 G C bias_e_value=1515590 bias_p_value=0.326518 consensus_reject=FREQUENCY_CUTOFF consensus_score=96.6 fisher_strand_p_value=0.568892 frequency=2.742e-01 ks_quality_p_value=0.172935 major_base=G major_cov=28/17 major_frequency=7.258e-01 minor_base=C minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.742e-01 polymorphism_score=55.8 prediction=polymorphism ref_cov=28/17 total_cov=37/26 RA 325 . NC_000913 1429466 0 G C bias_e_value=244184 bias_p_value=0.0526071 consensus_reject=FREQUENCY_CUTOFF consensus_score=84.7 fisher_strand_p_value=0.561059 frequency=2.787e-01 ks_quality_p_value=0.0165012 major_base=G major_cov=28/16 major_frequency=7.213e-01 minor_base=C minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.787e-01 polymorphism_score=55.9 prediction=polymorphism ref_cov=28/16 total_cov=37/26 RA 326 . NC_000913 1429470 0 C T bias_e_value=4087180 bias_p_value=0.880545 consensus_reject=FREQUENCY_CUTOFF consensus_score=101.1 fisher_strand_p_value=0.57948 frequency=2.698e-01 ks_quality_p_value=0.954155 major_base=C major_cov=28/18 major_frequency=7.302e-01 minor_base=T minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.698e-01 polymorphism_score=45.0 prediction=polymorphism ref_cov=28/18 total_cov=37/26 RA 327 . NC_000913 1429471 0 G C bias_e_value=3961870 bias_p_value=0.853547 consensus_reject=FREQUENCY_CUTOFF consensus_score=109.1 fisher_strand_p_value=0.57948 frequency=2.698e-01 ks_quality_p_value=0.880462 major_base=G major_cov=28/18 major_frequency=7.302e-01 minor_base=C minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.698e-01 polymorphism_score=54.9 prediction=polymorphism ref_cov=28/18 total_cov=37/26 RA 328 . NC_000913 1429474 0 A G bias_e_value=4056170 bias_p_value=0.873863 consensus_reject=FREQUENCY_CUTOFF consensus_score=99.2 fisher_strand_p_value=0.568892 frequency=2.742e-01 ks_quality_p_value=0.952423 major_base=A major_cov=28/17 major_frequency=7.258e-01 minor_base=G minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.742e-01 polymorphism_score=44.1 prediction=polymorphism ref_cov=28/17 total_cov=37/25 RA 329 . NC_000913 1429475 0 A G bias_e_value=3209840 bias_p_value=0.691529 consensus_reject=FREQUENCY_CUTOFF consensus_score=94.8 fisher_strand_p_value=0.57948 frequency=2.698e-01 ks_quality_p_value=0.562773 major_base=A major_cov=28/18 major_frequency=7.302e-01 minor_base=G minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.698e-01 polymorphism_score=45.4 prediction=polymorphism ref_cov=28/18 total_cov=37/26 RA 330 . NC_000913 1429479 0 A T bias_e_value=3353350 bias_p_value=0.722447 consensus_reject=FREQUENCY_CUTOFF consensus_score=122.2 fisher_strand_p_value=0.773936 frequency=2.742e-01 ks_quality_p_value=0.458439 major_base=A major_cov=27/18 major_frequency=7.258e-01 minor_base=T minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.742e-01 polymorphism_score=61.7 prediction=polymorphism ref_cov=27/18 total_cov=37/26 RA 331 . NC_000913 1429482 0 C T bias_e_value=2363680 bias_p_value=0.509233 consensus_reject=FREQUENCY_CUTOFF consensus_score=96.7 fisher_strand_p_value=0.566468 frequency=2.540e-01 ks_quality_p_value=0.339352 major_base=C major_cov=28/19 major_frequency=7.460e-01 minor_base=T minor_cov=8/8 new_cov=8/8 polymorphism_frequency=2.540e-01 polymorphism_score=43.3 prediction=polymorphism ref_cov=28/19 total_cov=36/27 RA 332 . NC_000913 1429484 0 G A bias_e_value=3741130 bias_p_value=0.805991 consensus_reject=FREQUENCY_CUTOFF consensus_score=98.7 fisher_strand_p_value=0.775747 frequency=2.656e-01 ks_quality_p_value=0.574729 major_base=G major_cov=28/19 major_frequency=7.344e-01 minor_base=A minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.656e-01 polymorphism_score=46.1 prediction=polymorphism ref_cov=28/19 total_cov=37/27 RA 333 . NC_000913 1429492 0 T A bias_e_value=4485950 bias_p_value=0.966456 consensus_reject=FREQUENCY_CUTOFF consensus_score=128.9 fisher_strand_p_value=0.779588 frequency=2.742e-01 ks_quality_p_value=0.965159 major_base=T major_cov=26/19 major_frequency=7.258e-01 minor_base=A minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.742e-01 polymorphism_score=58.8 prediction=polymorphism ref_cov=26/19 total_cov=35/27 RA 334 . NC_000913 1429493 0 G A bias_e_value=4373200 bias_p_value=0.942164 consensus_reject=FREQUENCY_CUTOFF consensus_score=95.2 fisher_strand_p_value=0.779588 frequency=2.742e-01 ks_quality_p_value=0.871969 major_base=G major_cov=26/19 major_frequency=7.258e-01 minor_base=A minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.742e-01 polymorphism_score=45.2 prediction=polymorphism ref_cov=26/19 total_cov=35/27 RA 335 . NC_000913 1429495 0 G T bias_e_value=4281450 bias_p_value=0.922397 consensus_reject=FREQUENCY_CUTOFF consensus_score=104.6 fisher_strand_p_value=0.775053 frequency=2.787e-01 ks_quality_p_value=0.816537 major_base=G major_cov=26/18 major_frequency=7.213e-01 minor_base=T minor_cov=9/8 new_cov=9/8 polymorphism_frequency=2.787e-01 polymorphism_score=45.4 prediction=polymorphism ref_cov=26/18 total_cov=35/26 RA 336 . NC_000913 1429510 0 A C bias_e_value=3166940 bias_p_value=0.682287 consensus_reject=FREQUENCY_CUTOFF consensus_score=43.9 fisher_strand_p_value=0.582133 frequency=3.276e-01 ks_quality_p_value=0.546198 major_base=A major_cov=22/17 major_frequency=6.724e-01 minor_base=C minor_cov=9/10 new_cov=9/10 polymorphism_frequency=3.276e-01 polymorphism_score=57.8 prediction=polymorphism ref_cov=22/17 total_cov=31/27 RA 337 . NC_000913 1429522 0 A C bias_e_value=4641640 bias_p_value=0.999998 consensus_reject=FREQUENCY_CUTOFF consensus_score=33.8 fisher_strand_p_value=1 frequency=3.729e-01 ks_quality_p_value=0.997962 major_base=A major_cov=20/17 major_frequency=6.271e-01 minor_base=C minor_cov=12/10 new_cov=12/10 polymorphism_frequency=3.729e-01 polymorphism_score=66.7 prediction=polymorphism ref_cov=20/17 total_cov=32/27 RA 338 . NC_000913 1429534 0 C T bias_e_value=4210940 bias_p_value=0.907208 consensus_reject=FREQUENCY_CUTOFF consensus_score=52.7 fisher_strand_p_value=0.802264 frequency=3.692e-01 ks_quality_p_value=0.749627 major_base=C major_cov=22/19 major_frequency=6.308e-01 minor_base=T minor_cov=12/12 new_cov=12/12 polymorphism_frequency=3.692e-01 polymorphism_score=72.2 prediction=polymorphism ref_cov=22/19 total_cov=34/31 RA 339 . NC_000913 1429537 0 G A bias_e_value=4592370 bias_p_value=0.989383 consensus_reject=FREQUENCY_CUTOFF consensus_score=59.9 fisher_strand_p_value=1 frequency=3.492e-01 ks_quality_p_value=0.857864 major_base=G major_cov=22/19 major_frequency=6.508e-01 minor_base=A minor_cov=12/10 new_cov=12/10 polymorphism_frequency=3.492e-01 polymorphism_score=64.7 prediction=polymorphism ref_cov=22/19 total_cov=34/29 RA 340 . NC_000913 1429543 0 G A bias_e_value=4638190 bias_p_value=0.999254 consensus_reject=FREQUENCY_CUTOFF consensus_score=59.7 fisher_strand_p_value=1 frequency=3.607e-01 ks_quality_p_value=0.961625 major_base=G major_cov=22/17 major_frequency=6.393e-01 minor_base=A minor_cov=12/10 new_cov=12/10 polymorphism_frequency=3.607e-01 polymorphism_score=60.4 prediction=polymorphism ref_cov=22/17 total_cov=34/29 RA 341 . NC_000913 1429550 0 T G bias_e_value=4474280 bias_p_value=0.963941 consensus_reject=FREQUENCY_CUTOFF consensus_score=71.4 fisher_strand_p_value=0.792518 frequency=3.333e-01 ks_quality_p_value=0.938482 major_base=T major_cov=22/20 major_frequency=6.667e-01 minor_base=G minor_cov=12/9 new_cov=12/9 polymorphism_frequency=3.333e-01 polymorphism_score=55.7 prediction=polymorphism ref_cov=22/20 total_cov=35/29 RA 342 . NC_000913 1429551 0 C A bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=82.7 fisher_strand_p_value=1 frequency=3.594e-01 ks_quality_p_value=1 major_base=C major_cov=22/19 major_frequency=6.406e-01 minor_base=A minor_cov=13/10 new_cov=13/10 polymorphism_frequency=3.594e-01 polymorphism_score=54.6 prediction=polymorphism ref_cov=22/19 total_cov=35/29 RA 343 . NC_000913 1429558 0 T C bias_e_value=4478320 bias_p_value=0.964811 consensus_reject=FREQUENCY_CUTOFF consensus_score=56.6 fisher_strand_p_value=1 frequency=3.651e-01 ks_quality_p_value=0.746721 major_base=T major_cov=22/18 major_frequency=6.349e-01 minor_base=C minor_cov=13/10 new_cov=13/10 polymorphism_frequency=3.651e-01 polymorphism_score=68.1 prediction=polymorphism ref_cov=22/18 total_cov=35/28 RA 344 . NC_000913 1429562 0 A G bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=62.5 fisher_strand_p_value=1 frequency=3.651e-01 ks_quality_p_value=1 major_base=A major_cov=22/18 major_frequency=6.349e-01 minor_base=G minor_cov=13/10 new_cov=13/10 polymorphism_frequency=3.651e-01 polymorphism_score=63.5 prediction=polymorphism ref_cov=22/18 total_cov=35/28 RA 345 . NC_000913 1429569 0 G A bias_e_value=4637760 bias_p_value=0.999161 consensus_reject=FREQUENCY_CUTOFF consensus_score=42.1 fisher_strand_p_value=1 frequency=3.906e-01 ks_quality_p_value=0.959312 major_base=G major_cov=23/16 major_frequency=6.094e-01 minor_base=A minor_cov=15/10 new_cov=15/10 polymorphism_frequency=3.906e-01 polymorphism_score=74.8 prediction=polymorphism ref_cov=23/16 total_cov=38/26 RA 346 . NC_000913 1429571 0 A G bias_e_value=4486110 bias_p_value=0.96649 consensus_reject=FREQUENCY_CUTOFF consensus_score=52.7 fisher_strand_p_value=1 frequency=3.731e-01 ks_quality_p_value=0.752546 major_base=A major_cov=26/16 major_frequency=6.269e-01 minor_base=G minor_cov=15/10 new_cov=15/10 polymorphism_frequency=3.731e-01 polymorphism_score=74.5 prediction=polymorphism ref_cov=26/16 total_cov=41/26 RA 347 . NC_000913 1429580 0 A G bias_e_value=4608610 bias_p_value=0.992881 consensus_reject=FREQUENCY_CUTOFF consensus_score=38.3 fisher_strand_p_value=1 frequency=3.968e-01 ks_quality_p_value=0.883076 major_base=A major_cov=24/14 major_frequency=6.032e-01 minor_base=G minor_cov=16/9 new_cov=16/9 polymorphism_frequency=3.968e-01 polymorphism_score=70.6 prediction=polymorphism ref_cov=24/14 total_cov=41/23 RA 348 . NC_000913 1429597 0 A G bias_e_value=4479070 bias_p_value=0.964974 consensus_reject=FREQUENCY_CUTOFF consensus_score=52.0 fisher_strand_p_value=1 frequency=3.824e-01 ks_quality_p_value=0.747279 major_base=A major_cov=27/15 major_frequency=6.176e-01 minor_base=G minor_cov=17/9 new_cov=17/9 polymorphism_frequency=3.824e-01 polymorphism_score=77.6 prediction=polymorphism ref_cov=27/15 total_cov=44/24 RA 349 . NC_000913 1429598 0 T G bias_e_value=4631840 bias_p_value=0.997886 consensus_reject=FREQUENCY_CUTOFF consensus_score=38.9 fisher_strand_p_value=1 frequency=3.913e-01 ks_quality_p_value=0.935679 major_base=T major_cov=27/15 major_frequency=6.087e-01 minor_base=G minor_cov=18/9 new_cov=18/9 polymorphism_frequency=3.913e-01 polymorphism_score=86.3 prediction=polymorphism ref_cov=27/15 total_cov=45/24 RA 350 . NC_000913 1429599 0 C A bias_e_value=4467050 bias_p_value=0.962384 consensus_reject=FREQUENCY_CUTOFF consensus_score=57.8 fisher_strand_p_value=0.799421 frequency=4.058e-01 ks_quality_p_value=0.923874 major_base=C major_cov=26/15 major_frequency=5.942e-01 minor_base=A minor_cov=19/9 new_cov=19/9 polymorphism_frequency=4.058e-01 polymorphism_score=74.0 prediction=polymorphism ref_cov=26/15 total_cov=45/24 RA 351 . NC_000913 1429609 0 T C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=66.6 fisher_strand_p_value=1 frequency=3.803e-01 ks_quality_p_value=1 major_base=T major_cov=28/16 major_frequency=6.197e-01 minor_base=C minor_cov=18/9 new_cov=18/9 polymorphism_frequency=3.803e-01 polymorphism_score=72.6 prediction=polymorphism ref_cov=28/16 total_cov=46/25 RA 352 . NC_000913 1429612 0 C A bias_e_value=4216240 bias_p_value=0.908348 consensus_reject=FREQUENCY_CUTOFF consensus_score=56.5 fisher_strand_p_value=0.618115 frequency=4.085e-01 ks_quality_p_value=0.976596 major_base=C major_cov=26/16 major_frequency=5.915e-01 minor_base=A minor_cov=20/9 new_cov=20/9 polymorphism_frequency=4.085e-01 polymorphism_score=73.3 prediction=polymorphism ref_cov=26/16 total_cov=46/25 RA 353 . NC_000913 1429615 0 T C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=68.2 fisher_strand_p_value=1 frequency=3.699e-01 ks_quality_p_value=1 major_base=T major_cov=30/16 major_frequency=6.301e-01 minor_base=C minor_cov=18/9 new_cov=18/9 polymorphism_frequency=3.699e-01 polymorphism_score=75.2 prediction=polymorphism ref_cov=30/16 total_cov=48/25 RA 354 . NC_000913 1429632 0 G A bias_e_value=2332900 bias_p_value=0.502602 consensus_reject=FREQUENCY_CUTOFF consensus_score=61.1 fisher_strand_p_value=0.234103 frequency=3.827e-01 ks_quality_p_value=0.804074 major_base=G major_cov=30/20 major_frequency=6.173e-01 minor_base=A minor_cov=23/8 new_cov=23/8 polymorphism_frequency=3.827e-01 polymorphism_score=91.1 prediction=polymorphism ref_cov=30/20 total_cov=53/28 RA 355 . NC_000913 1429682 0 T G bias_e_value=1171840 bias_p_value=0.252461 consensus_reject=FREQUENCY_CUTOFF consensus_score=71.1 fisher_strand_p_value=0.0695518 frequency=3.647e-01 ks_quality_p_value=0.986583 major_base=T major_cov=29/25 major_frequency=6.353e-01 minor_base=G minor_cov=23/8 new_cov=23/8 polymorphism_frequency=3.647e-01 polymorphism_score=99.4 prediction=polymorphism ref_cov=29/25 total_cov=54/33 RA 356 . NC_000913 1429692 0 T A bias_e_value=1313700 bias_p_value=0.283025 consensus_reject=FREQUENCY_CUTOFF consensus_score=116.8 fisher_strand_p_value=0.0994496 frequency=3.488e-01 ks_quality_p_value=0.808281 major_base=T major_cov=32/24 major_frequency=6.512e-01 minor_base=A minor_cov=23/7 new_cov=23/7 polymorphism_frequency=3.488e-01 polymorphism_score=115.9 prediction=polymorphism ref_cov=32/24 total_cov=56/31 RA 357 . NC_000913 1429702 0 A C bias_e_value=1102150 bias_p_value=0.237447 consensus_reject=FREQUENCY_CUTOFF consensus_score=49.8 fisher_strand_p_value=0.0630999 frequency=3.690e-01 ks_quality_p_value=1 major_base=A major_cov=30/23 major_frequency=6.310e-01 minor_base=C minor_cov=24/7 new_cov=24/7 polymorphism_frequency=3.690e-01 polymorphism_score=90.5 prediction=polymorphism ref_cov=30/23 total_cov=54/30 RA 358 . NC_000913 1429708 0 A G bias_e_value=778847 bias_p_value=0.167795 consensus_reject=FREQUENCY_CUTOFF consensus_score=92.3 fisher_strand_p_value=0.0397022 frequency=3.523e-01 ks_quality_p_value=1 major_base=A major_cov=31/26 major_frequency=6.477e-01 minor_base=G minor_cov=24/7 new_cov=24/7 polymorphism_frequency=3.523e-01 polymorphism_score=86.0 prediction=polymorphism ref_cov=31/26 total_cov=55/33 RA 359 . NC_000913 1429714 0 A C bias_e_value=510354 bias_p_value=0.109951 consensus_reject=FREQUENCY_CUTOFF consensus_score=63.3 fisher_strand_p_value=0.0230501 frequency=3.596e-01 ks_quality_p_value=1 major_base=A major_cov=30/27 major_frequency=6.404e-01 minor_base=C minor_cov=25/7 new_cov=25/7 polymorphism_frequency=3.596e-01 polymorphism_score=93.5 prediction=polymorphism ref_cov=30/27 total_cov=55/34 RA 360 . NC_000913 1429724 0 A G bias_e_value=1014790 bias_p_value=0.218628 consensus_reject=FREQUENCY_CUTOFF consensus_score=94.1 fisher_strand_p_value=0.0638398 frequency=3.523e-01 ks_quality_p_value=0.883798 major_base=A major_cov=32/25 major_frequency=6.477e-01 minor_base=G minor_cov=24/7 new_cov=24/7 polymorphism_frequency=3.523e-01 polymorphism_score=90.3 prediction=polymorphism ref_cov=32/25 total_cov=57/32 RA 361 . NC_000913 1429732 0 G A bias_e_value=1142530 bias_p_value=0.246148 consensus_reject=FREQUENCY_CUTOFF consensus_score=92.5 fisher_strand_p_value=0.0663094 frequency=3.448e-01 ks_quality_p_value=0.999516 major_base=G major_cov=32/25 major_frequency=6.552e-01 minor_base=A minor_cov=23/7 new_cov=23/7 polymorphism_frequency=3.448e-01 polymorphism_score=88.9 prediction=polymorphism ref_cov=32/25 total_cov=56/32 RA 362 . NC_000913 1429735 0 A G bias_e_value=1071940 bias_p_value=0.230939 consensus_reject=FREQUENCY_CUTOFF consensus_score=95.1 fisher_strand_p_value=0.0638398 frequency=3.523e-01 ks_quality_p_value=0.951761 major_base=A major_cov=32/25 major_frequency=6.477e-01 minor_base=G minor_cov=24/7 new_cov=24/7 polymorphism_frequency=3.523e-01 polymorphism_score=86.4 prediction=polymorphism ref_cov=32/25 total_cov=56/32 RA 363 . NC_000913 1429741 0 A G bias_e_value=1111620 bias_p_value=0.239487 consensus_reject=FREQUENCY_CUTOFF consensus_score=96.9 fisher_strand_p_value=0.0638398 frequency=3.523e-01 ks_quality_p_value=1 major_base=A major_cov=32/25 major_frequency=6.477e-01 minor_base=G minor_cov=24/7 new_cov=24/7 polymorphism_frequency=3.523e-01 polymorphism_score=87.3 prediction=polymorphism ref_cov=32/25 total_cov=56/32 RA 364 . NC_000913 1429744 0 T C bias_e_value=1507950 bias_p_value=0.324874 consensus_reject=FREQUENCY_CUTOFF consensus_score=86.2 fisher_strand_p_value=0.0980257 frequency=3.647e-01 ks_quality_p_value=0.996408 major_base=T major_cov=31/23 major_frequency=6.353e-01 minor_base=C minor_cov=24/7 new_cov=24/7 polymorphism_frequency=3.647e-01 polymorphism_score=90.4 prediction=polymorphism ref_cov=31/23 total_cov=55/31 RA 365 . NC_000913 1429747 0 G C bias_e_value=1103300 bias_p_value=0.237697 consensus_reject=FREQUENCY_CUTOFF consensus_score=91.3 fisher_strand_p_value=0.0631902 frequency=3.605e-01 ks_quality_p_value=1 major_base=G major_cov=31/24 major_frequency=6.395e-01 minor_base=C minor_cov=24/7 new_cov=24/7 polymorphism_frequency=3.605e-01 polymorphism_score=106.6 prediction=polymorphism ref_cov=31/24 total_cov=55/31 RA 366 . NC_000913 1429750 0 C T bias_e_value=1141440 bias_p_value=0.245912 consensus_reject=FREQUENCY_CUTOFF consensus_score=91.5 fisher_strand_p_value=0.0661903 frequency=3.563e-01 ks_quality_p_value=1 major_base=C major_cov=32/24 major_frequency=6.437e-01 minor_base=T minor_cov=24/7 new_cov=24/7 polymorphism_frequency=3.563e-01 polymorphism_score=88.5 prediction=polymorphism ref_cov=32/24 total_cov=56/31 RA 367 . NC_000913 1429753 0 G A bias_e_value=1103300 bias_p_value=0.237697 consensus_reject=FREQUENCY_CUTOFF consensus_score=83.1 fisher_strand_p_value=0.0631902 frequency=3.605e-01 ks_quality_p_value=1 major_base=G major_cov=31/24 major_frequency=6.395e-01 minor_base=A minor_cov=24/7 new_cov=24/7 polymorphism_frequency=3.605e-01 polymorphism_score=83.2 prediction=polymorphism ref_cov=31/24 total_cov=55/31 RA 368 . NC_000913 1429756 0 C A bias_e_value=342040 bias_p_value=0.0736892 consensus_reject=FREQUENCY_CUTOFF consensus_score=71.7 fisher_strand_p_value=0.0368615 frequency=3.837e-01 ks_quality_p_value=0.379339 major_base=C major_cov=29/24 major_frequency=6.163e-01 minor_base=A minor_cov=26/7 new_cov=26/7 polymorphism_frequency=3.837e-01 polymorphism_score=80.5 prediction=polymorphism ref_cov=29/24 total_cov=55/31 RA 369 . NC_000913 1429759 0 G A bias_e_value=1025150 bias_p_value=0.220858 consensus_reject=FREQUENCY_CUTOFF consensus_score=83.1 fisher_strand_p_value=0.0661903 frequency=3.563e-01 ks_quality_p_value=0.864162 major_base=G major_cov=32/24 major_frequency=6.437e-01 minor_base=A minor_cov=24/7 new_cov=24/7 polymorphism_frequency=3.563e-01 polymorphism_score=91.2 prediction=polymorphism ref_cov=32/24 total_cov=56/31 RA 370 . NC_000913 1429767 0 C T bias_e_value=1114570 bias_p_value=0.240124 consensus_reject=FREQUENCY_CUTOFF consensus_score=98.5 fisher_strand_p_value=0.0649775 frequency=3.444e-01 ks_quality_p_value=0.986053 major_base=C major_cov=33/26 major_frequency=6.556e-01 minor_base=T minor_cov=24/7 new_cov=24/7 polymorphism_frequency=3.444e-01 polymorphism_score=91.7 prediction=polymorphism ref_cov=33/26 total_cov=57/33 RA 371 . NC_000913 1429780 0 A G bias_e_value=406577 bias_p_value=0.0875931 consensus_reject=FREQUENCY_CUTOFF consensus_score=114.4 fisher_strand_p_value=0.0173262 frequency=3.295e-01 ks_quality_p_value=1 major_base=A major_cov=33/26 major_frequency=6.705e-01 minor_base=G minor_cov=24/5 new_cov=24/5 polymorphism_frequency=3.295e-01 polymorphism_score=80.3 prediction=polymorphism ref_cov=33/26 total_cov=57/31 RA 372 . NC_000913 1429783 0 G A bias_e_value=295794 bias_p_value=0.063726 consensus_reject=FREQUENCY_CUTOFF consensus_score=98.1 fisher_strand_p_value=0.0173262 frequency=3.295e-01 ks_quality_p_value=0.675052 major_base=G major_cov=33/26 major_frequency=6.705e-01 minor_base=A minor_cov=24/5 new_cov=24/5 polymorphism_frequency=3.295e-01 polymorphism_score=83.7 prediction=polymorphism ref_cov=33/26 total_cov=57/31 RA 373 . NC_000913 1429816 0 C T bias_e_value=151583 bias_p_value=0.032657 consensus_reject=FREQUENCY_CUTOFF consensus_score=141.4 fisher_strand_p_value=0.00580782 frequency=2.697e-01 ks_quality_p_value=0.898939 major_base=C major_cov=36/29 major_frequency=7.303e-01 minor_base=T minor_cov=21/3 new_cov=21/3 polymorphism_frequency=2.697e-01 polymorphism_score=65.7 prediction=polymorphism ref_cov=36/29 total_cov=57/32 RA 374 . NC_000913 1429820 0 A G bias_e_value=141023 bias_p_value=0.0303821 consensus_reject=FREQUENCY_CUTOFF consensus_score=134.3 fisher_strand_p_value=0.00546909 frequency=2.791e-01 ks_quality_p_value=0.876093 major_base=A major_cov=34/28 major_frequency=7.209e-01 minor_base=G minor_cov=21/3 new_cov=21/3 polymorphism_frequency=2.791e-01 polymorphism_score=63.1 prediction=polymorphism ref_cov=34/28 total_cov=55/31 RA 375 . NC_000913 1429823 0 A C bias_e_value=263486 bias_p_value=0.0567655 consensus_reject=FREQUENCY_CUTOFF consensus_score=122.8 fisher_strand_p_value=0.0102082 frequency=2.674e-01 ks_quality_p_value=0.994813 major_base=A major_cov=35/28 major_frequency=7.326e-01 minor_base=C minor_cov=20/3 new_cov=20/3 polymorphism_frequency=2.674e-01 polymorphism_score=58.6 prediction=polymorphism ref_cov=35/28 total_cov=55/31 RA 376 . NC_000913 1429851 0 G A bias_e_value=404334 bias_p_value=0.0871099 consensus_reject=FREQUENCY_CUTOFF consensus_score=157.2 fisher_strand_p_value=0.0192957 frequency=2.442e-01 ks_quality_p_value=0.89176 major_base=G major_cov=37/28 major_frequency=7.558e-01 minor_base=A minor_cov=18/3 new_cov=18/3 polymorphism_frequency=2.442e-01 polymorphism_score=56.5 prediction=polymorphism ref_cov=37/28 total_cov=55/31 RA 377 . NC_000913 1429858 0 C T bias_e_value=865825 bias_p_value=0.186534 consensus_reject=FREQUENCY_CUTOFF consensus_score=158.1 fisher_strand_p_value=0.0510029 frequency=2.152e-01 ks_quality_p_value=0.89488 major_base=C major_cov=34/28 major_frequency=7.848e-01 minor_base=T minor_cov=14/3 new_cov=14/3 polymorphism_frequency=2.152e-01 polymorphism_score=40.9 prediction=polymorphism ref_cov=34/28 total_cov=50/31 RA 378 . NC_000913 1429861 0 G C bias_e_value=1350160 bias_p_value=0.29088 consensus_reject=FREQUENCY_CUTOFF consensus_score=195.9 fisher_strand_p_value=0.0856988 frequency=2.025e-01 ks_quality_p_value=0.97461 major_base=G major_cov=35/28 major_frequency=7.975e-01 minor_base=C minor_cov=13/3 new_cov=13/3 polymorphism_frequency=2.025e-01 polymorphism_score=43.3 prediction=polymorphism ref_cov=35/28 total_cov=50/31 RA 379 . NC_000913 1429863 0 A G bias_e_value=626646 bias_p_value=0.135005 consensus_reject=FREQUENCY_CUTOFF consensus_score=160.9 fisher_strand_p_value=0.0299453 frequency=2.278e-01 ks_quality_p_value=1 major_base=A major_cov=33/28 major_frequency=7.722e-01 minor_base=G minor_cov=15/3 new_cov=15/3 polymorphism_frequency=2.278e-01 polymorphism_score=44.4 prediction=polymorphism ref_cov=33/28 total_cov=48/31 RA 380 . NC_000913 1429888 0 C T bias_e_value=539394 bias_p_value=0.116207 consensus_reject=FREQUENCY_CUTOFF consensus_score=151.0 fisher_strand_p_value=0.025451 frequency=2.133e-01 ks_quality_p_value=0.971488 major_base=C major_cov=29/30 major_frequency=7.867e-01 minor_base=T minor_cov=13/3 new_cov=13/3 polymorphism_frequency=2.133e-01 polymorphism_score=39.7 prediction=polymorphism ref_cov=29/30 total_cov=42/33 RA 381 . NC_000913 1429897 0 T A bias_e_value=539394 bias_p_value=0.116207 consensus_reject=FREQUENCY_CUTOFF consensus_score=182.3 fisher_strand_p_value=0.025451 frequency=2.133e-01 ks_quality_p_value=0.971488 major_base=T major_cov=29/30 major_frequency=7.867e-01 minor_base=A minor_cov=13/3 new_cov=13/3 polymorphism_frequency=2.133e-01 polymorphism_score=52.7 prediction=polymorphism ref_cov=29/30 total_cov=42/33 RA 382 . NC_000913 1466432 0 A G bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=86.0 fisher_strand_p_value=1 frequency=2.545e-01 ks_quality_p_value=1 major_base=A major_cov=25/16 major_frequency=7.455e-01 minor_base=G minor_cov=8/6 new_cov=8/6 polymorphism_frequency=2.545e-01 polymorphism_score=23.6 prediction=polymorphism ref_cov=25/16 total_cov=33/22 RA 383 . NC_000913 1466435 0 A G bias_e_value=1490820 bias_p_value=0.321183 consensus_reject=FREQUENCY_CUTOFF consensus_score=100.5 fisher_strand_p_value=0.0960922 frequency=2.182e-01 ks_quality_p_value=1 major_base=A major_cov=23/20 major_frequency=7.818e-01 minor_base=G minor_cov=10/2 new_cov=10/2 polymorphism_frequency=2.182e-01 polymorphism_score=17.0 prediction=polymorphism ref_cov=23/20 total_cov=33/22 RA 384 . NC_000913 1466438 0 T G bias_e_value=4519970 bias_p_value=0.973786 consensus_reject=FREQUENCY_CUTOFF consensus_score=82.2 fisher_strand_p_value=0.779943 frequency=3.103e-01 ks_quality_p_value=1 major_base=T major_cov=24/16 major_frequency=6.897e-01 minor_base=G minor_cov=10/8 new_cov=10/8 polymorphism_frequency=3.103e-01 polymorphism_score=32.7 prediction=polymorphism ref_cov=24/16 total_cov=34/24 RA 385 . NC_000913 1502768 0 G A bias_e_value=153.352 bias_p_value=3.30382e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=149.3 fisher_strand_p_value=2.36772e-06 frequency=2.262e-01 ks_quality_p_value=1 major_base=G major_cov=37/28 major_frequency=7.738e-01 minor_base=A minor_cov=0/19 new_cov=0/19 polymorphism_frequency=2.262e-01 polymorphism_score=11.5 prediction=polymorphism ref_cov=37/28 total_cov=37/47 RA 386 . NC_000913 1502770 0 T C bias_e_value=0.441642 bias_p_value=9.51476e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=117.3 fisher_strand_p_value=4.71678e-09 frequency=3.095e-01 ks_quality_p_value=1 major_base=T major_cov=37/21 major_frequency=6.905e-01 minor_base=C minor_cov=0/26 new_cov=0/26 polymorphism_frequency=3.095e-01 polymorphism_score=26.4 prediction=polymorphism ref_cov=37/21 total_cov=37/47 RA 387 . NC_000913 1502772 0 G A bias_e_value=0.441642 bias_p_value=9.51476e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=127.9 fisher_strand_p_value=4.71678e-09 frequency=3.095e-01 ks_quality_p_value=1 major_base=G major_cov=37/21 major_frequency=6.905e-01 minor_base=A minor_cov=0/26 new_cov=0/26 polymorphism_frequency=3.095e-01 polymorphism_score=22.9 prediction=polymorphism ref_cov=37/21 total_cov=37/47 RA 388 . NC_000913 1610076 0 T G consensus_score=371.3 frequency=1 major_base=G major_cov=48/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/51 RA 389 . NC_000913 1610440 0 C T consensus_score=177.2 frequency=1 major_base=T major_cov=22/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/34 RA 390 . NC_000913 1634370 0 T C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=19.5 fisher_strand_p_value=1 frequency=4.242e-01 ks_quality_p_value=1 major_base=T major_cov=14/5 major_frequency=5.758e-01 minor_base=C minor_cov=10/4 new_cov=10/4 polymorphism_frequency=4.242e-01 polymorphism_score=36.3 prediction=polymorphism ref_cov=14/5 total_cov=24/9 RA 391 . NC_000913 1634382 0 T C bias_e_value=2478860 bias_p_value=0.534046 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=6.0 fisher_strand_p_value=1 frequency=5.250e-01 ks_quality_p_value=0.207644 major_base=C major_cov=15/6 major_frequency=5.250e-01 minor_base=T minor_cov=14/5 new_cov=15/6 polymorphism_frequency=5.250e-01 polymorphism_score=56.8 prediction=polymorphism ref_cov=14/5 total_cov=29/11 RA 392 . NC_000913 1634388 0 T G bias_e_value=4579600 bias_p_value=0.986631 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=6.1 fisher_strand_p_value=1 frequency=5.238e-01 ks_quality_p_value=0.841003 major_base=G major_cov=16/6 major_frequency=5.238e-01 minor_base=T minor_cov=14/6 new_cov=16/6 polymorphism_frequency=5.238e-01 polymorphism_score=53.4 prediction=polymorphism ref_cov=14/6 total_cov=30/12 RA 393 . NC_000913 1634404 0 A G bias_e_value=4614240 bias_p_value=0.994095 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-4.4 fisher_strand_p_value=1 frequency=5.769e-01 ks_quality_p_value=0.893311 major_base=G major_cov=20/10 major_frequency=5.769e-01 minor_base=A minor_cov=15/7 new_cov=20/10 polymorphism_frequency=5.769e-01 polymorphism_score=58.2 prediction=polymorphism ref_cov=15/7 total_cov=35/17 RA 394 . NC_000913 1634482 0 T C bias_e_value=4024260 bias_p_value=0.866988 consensus_reject=FREQUENCY_CUTOFF consensus_score=29.9 fisher_strand_p_value=0.838811 frequency=4.951e-01 ks_quality_p_value=0.632792 major_base=T major_cov=34/18 major_frequency=5.049e-01 minor_base=C minor_cov=32/19 new_cov=32/19 polymorphism_frequency=4.951e-01 polymorphism_score=156.2 prediction=polymorphism ref_cov=34/18 total_cov=66/37 RA 395 . NC_000913 1634484 0 G T bias_e_value=4266360 bias_p_value=0.919146 consensus_reject=FREQUENCY_CUTOFF consensus_score=32.9 fisher_strand_p_value=1 frequency=5.049e-01 ks_quality_p_value=0.625839 major_base=T major_cov=33/19 major_frequency=5.049e-01 minor_base=G minor_cov=33/18 new_cov=33/19 polymorphism_frequency=5.049e-01 polymorphism_score=174.0 prediction=polymorphism ref_cov=33/18 total_cov=66/37 RA 396 . NC_000913 1634569 0 A T bias_e_value=4507220 bias_p_value=0.971038 consensus_reject=FREQUENCY_CUTOFF consensus_score=98.2 fisher_strand_p_value=0.873037 frequency=4.601e-01 ks_quality_p_value=0.881049 major_base=A major_cov=54/34 major_frequency=5.399e-01 minor_base=T minor_cov=47/28 new_cov=47/28 polymorphism_frequency=4.601e-01 polymorphism_score=305.1 prediction=polymorphism ref_cov=54/34 total_cov=101/62 RA 397 . NC_000913 1634571 0 C T bias_e_value=4596610 bias_p_value=0.990295 consensus_reject=FREQUENCY_CUTOFF consensus_score=88.2 fisher_strand_p_value=0.873037 frequency=4.601e-01 ks_quality_p_value=0.989597 major_base=C major_cov=54/34 major_frequency=5.399e-01 minor_base=T minor_cov=47/28 new_cov=47/28 polymorphism_frequency=4.601e-01 polymorphism_score=236.6 prediction=polymorphism ref_cov=54/34 total_cov=101/62 RA 398 . NC_000913 1634578 0 T C bias_e_value=4602270 bias_p_value=0.991515 consensus_reject=FREQUENCY_CUTOFF consensus_score=91.8 fisher_strand_p_value=0.872594 frequency=4.596e-01 ks_quality_p_value=1 major_base=T major_cov=54/33 major_frequency=5.404e-01 minor_base=C minor_cov=45/29 new_cov=45/29 polymorphism_frequency=4.596e-01 polymorphism_score=208.8 prediction=polymorphism ref_cov=54/33 total_cov=101/62 RA 399 . NC_000913 1634597 0 C A bias_e_value=4605720 bias_p_value=0.992259 consensus_reject=FREQUENCY_CUTOFF consensus_score=104.1 fisher_strand_p_value=0.878184 frequency=4.571e-01 ks_quality_p_value=1 major_base=C major_cov=54/41 major_frequency=5.429e-01 minor_base=A minor_cov=47/33 new_cov=47/33 polymorphism_frequency=4.571e-01 polymorphism_score=227.3 prediction=polymorphism ref_cov=54/41 total_cov=101/74 RA 400 . NC_000913 1634658 0 A G bias_e_value=4310600 bias_p_value=0.928677 consensus_reject=FREQUENCY_CUTOFF consensus_score=109.5 fisher_strand_p_value=0.646925 frequency=4.509e-01 ks_quality_p_value=1 major_base=A major_cov=48/47 major_frequency=5.491e-01 minor_base=G minor_cov=36/42 new_cov=36/42 polymorphism_frequency=4.509e-01 polymorphism_score=231.8 prediction=polymorphism ref_cov=48/47 total_cov=84/89 RA 401 . NC_000913 1634661 0 C G bias_e_value=4306620 bias_p_value=0.92782 consensus_reject=FREQUENCY_CUTOFF consensus_score=95.1 fisher_strand_p_value=0.644965 frequency=4.643e-01 ks_quality_p_value=1 major_base=C major_cov=45/45 major_frequency=5.357e-01 minor_base=G minor_cov=36/42 new_cov=36/42 polymorphism_frequency=4.643e-01 polymorphism_score=288.9 prediction=polymorphism ref_cov=45/45 total_cov=81/87 RA 402 . NC_000913 1634676 0 A G bias_e_value=4598170 bias_p_value=0.990632 consensus_reject=FREQUENCY_CUTOFF consensus_score=94.1 fisher_strand_p_value=0.872298 frequency=4.545e-01 ks_quality_p_value=0.993098 major_base=A major_cov=41/43 major_frequency=5.455e-01 minor_base=G minor_cov=33/37 new_cov=33/37 polymorphism_frequency=4.545e-01 polymorphism_score=216.2 prediction=polymorphism ref_cov=41/43 total_cov=75/80 RA 403 . NC_000913 1634699 0 A C bias_e_value=4598310 bias_p_value=0.990661 consensus_reject=FREQUENCY_CUTOFF consensus_score=88.8 fisher_strand_p_value=0.866486 frequency=4.406e-01 ks_quality_p_value=1 major_base=A major_cov=40/40 major_frequency=5.594e-01 minor_base=C minor_cov=30/33 new_cov=30/33 polymorphism_frequency=4.406e-01 polymorphism_score=200.0 prediction=polymorphism ref_cov=40/40 total_cov=70/73 RA 404 . NC_000913 1634724 0 G A bias_e_value=3886380 bias_p_value=0.837284 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.5 fisher_strand_p_value=0.597351 frequency=4.538e-01 ks_quality_p_value=0.815014 major_base=G major_cov=38/33 major_frequency=5.462e-01 minor_base=A minor_cov=28/31 new_cov=28/31 polymorphism_frequency=4.538e-01 polymorphism_score=182.7 prediction=polymorphism ref_cov=38/33 total_cov=66/65 RA 405 . NC_000913 1634769 0 T A bias_e_value=4641410 bias_p_value=0.999949 consensus_reject=FREQUENCY_CUTOFF consensus_score=125.7 fisher_strand_p_value=1 frequency=3.604e-01 ks_quality_p_value=0.9899 major_base=T major_cov=29/42 major_frequency=6.396e-01 minor_base=A minor_cov=16/24 new_cov=16/24 polymorphism_frequency=3.604e-01 polymorphism_score=155.1 prediction=polymorphism ref_cov=29/42 total_cov=45/66 RA 406 . NC_000913 1634778 0 T G bias_e_value=4031860 bias_p_value=0.868626 consensus_reject=FREQUENCY_CUTOFF consensus_score=110.9 fisher_strand_p_value=1 frequency=3.486e-01 ks_quality_p_value=0.533389 major_base=T major_cov=29/42 major_frequency=6.514e-01 minor_base=G minor_cov=16/22 new_cov=16/22 polymorphism_frequency=3.486e-01 polymorphism_score=119.6 prediction=polymorphism ref_cov=29/42 total_cov=45/64 RA 407 . NC_000913 1634799 0 A G bias_e_value=4575890 bias_p_value=0.985831 consensus_reject=FREQUENCY_CUTOFF consensus_score=155.2 fisher_strand_p_value=1 frequency=3.113e-01 ks_quality_p_value=0.836454 major_base=A major_cov=34/39 major_frequency=6.887e-01 minor_base=G minor_cov=16/17 new_cov=16/17 polymorphism_frequency=3.113e-01 polymorphism_score=93.5 prediction=polymorphism ref_cov=34/39 total_cov=50/56 RA 408 . NC_000913 1635974 0 T G bias_e_value=4170440 bias_p_value=0.898482 consensus_reject=FREQUENCY_CUTOFF consensus_score=164.5 fisher_strand_p_value=0.598893 frequency=2.069e-01 ks_quality_p_value=0.976297 major_base=T major_cov=37/32 major_frequency=7.931e-01 minor_base=G minor_cov=8/10 new_cov=8/10 polymorphism_frequency=2.069e-01 polymorphism_score=44.2 prediction=polymorphism ref_cov=37/32 total_cov=45/42 RA 409 . NC_000913 1636128 0 C T bias_e_value=3393620 bias_p_value=0.731123 consensus_reject=FREQUENCY_CUTOFF consensus_score=254.6 fisher_strand_p_value=0.363273 frequency=2.000e-01 ks_quality_p_value=1 major_base=C major_cov=50/42 major_frequency=8.000e-01 minor_base=T minor_cov=10/13 new_cov=10/13 polymorphism_frequency=2.000e-01 polymorphism_score=55.7 prediction=polymorphism ref_cov=50/42 total_cov=60/56 RA 410 . NC_000913 1636382 0 C A bias_e_value=2656680 bias_p_value=0.572357 consensus_reject=FREQUENCY_CUTOFF consensus_score=236.5 fisher_strand_p_value=0.42122 frequency=2.764e-01 ks_quality_p_value=0.553061 major_base=C major_cov=50/39 major_frequency=7.236e-01 minor_base=A minor_cov=16/18 new_cov=16/18 polymorphism_frequency=2.764e-01 polymorphism_score=93.4 prediction=polymorphism ref_cov=50/39 total_cov=66/57 RA 411 . NC_000913 1636413 0 C A bias_e_value=4152830 bias_p_value=0.894687 consensus_reject=FREQUENCY_CUTOFF consensus_score=188.5 fisher_strand_p_value=0.72305 frequency=3.431e-01 ks_quality_p_value=0.798985 major_base=C major_cov=47/43 major_frequency=6.569e-01 minor_base=A minor_cov=23/24 new_cov=23/24 polymorphism_frequency=3.431e-01 polymorphism_score=133.7 prediction=polymorphism ref_cov=47/43 total_cov=70/67 RA 412 . NC_000913 1636423 0 T C bias_e_value=3125610 bias_p_value=0.673383 consensus_reject=FREQUENCY_CUTOFF consensus_score=181.2 fisher_strand_p_value=0.579909 frequency=3.359e-01 ks_quality_p_value=0.535033 major_base=T major_cov=45/42 major_frequency=6.641e-01 minor_base=C minor_cov=20/24 new_cov=20/24 polymorphism_frequency=3.359e-01 polymorphism_score=129.7 prediction=polymorphism ref_cov=45/42 total_cov=65/66 RA 413 . NC_000913 1636455 0 G A bias_e_value=174265 bias_p_value=0.0375438 consensus_reject=FREQUENCY_CUTOFF consensus_score=110.3 fisher_strand_p_value=0.613496 frequency=3.878e-01 ks_quality_p_value=0.0100509 major_base=G major_cov=42/48 major_frequency=6.122e-01 minor_base=A minor_cov=24/33 new_cov=24/33 polymorphism_frequency=3.878e-01 polymorphism_score=170.2 prediction=polymorphism ref_cov=42/48 total_cov=66/83 RA 414 . NC_000913 1636484 0 C T bias_e_value=3458820 bias_p_value=0.745169 consensus_reject=FREQUENCY_CUTOFF consensus_score=111.3 fisher_strand_p_value=0.630705 frequency=4.233e-01 ks_quality_p_value=0.598397 major_base=C major_cov=41/53 major_frequency=5.767e-01 minor_base=T minor_cov=27/42 new_cov=27/42 polymorphism_frequency=4.233e-01 polymorphism_score=213.5 prediction=polymorphism ref_cov=41/53 total_cov=68/95 RA 415 . NC_000913 1636503 0 T C bias_e_value=4460500 bias_p_value=0.960972 consensus_reject=FREQUENCY_CUTOFF consensus_score=97.8 fisher_strand_p_value=0.753722 frequency=4.497e-01 ks_quality_p_value=0.973768 major_base=T major_cov=40/53 major_frequency=5.503e-01 minor_base=C minor_cov=30/46 new_cov=30/46 polymorphism_frequency=4.497e-01 polymorphism_score=228.9 prediction=polymorphism ref_cov=40/53 total_cov=70/99 RA 416 . NC_000913 1643679 0 A T consensus_score=197.3 frequency=1 major_base=T major_cov=24/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/32 RA 417 . NC_000913 1652331 0 T C consensus_score=327.9 frequency=1 major_base=C major_cov=39/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/49 RA 418 . NC_000913 1721136 0 C T consensus_score=319.2 frequency=1 major_base=T major_cov=32/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/60 RA 419 . NC_000913 1738377 0 C T consensus_score=224.1 frequency=1 major_base=T major_cov=26/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/39 RA 420 . NC_000913 1776715 0 A T consensus_score=367.9 frequency=1 major_base=T major_cov=52/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/54 RA 421 . NC_000913 1856968 0 T A bias_e_value=3814690 bias_p_value=0.821838 consensus_score=366.7 fisher_strand_p_value=0.466019 frequency=1 ks_quality_p_value=1 major_base=A major_cov=47/55 major_frequency=9.903e-01 minor_base=C minor_cov=1/0 new_cov=47/55 polymorphism_frequency=9.903e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/55 RA 422 . NC_000913 1894839 0 T C consensus_score=297.4 frequency=1 major_base=C major_cov=43/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/38 RA 423 . NC_000913 1975224 0 G A consensus_score=257.6 frequency=1 major_base=A major_cov=47/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/29 RA 424 . NC_000913 1987499 0 C A consensus_score=184.5 frequency=1 major_base=A major_cov=31/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/24 RA 425 . NC_000913 2003276 0 A C consensus_score=404.8 frequency=1 major_base=C major_cov=45/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/65 RA 426 . NC_000913 2003462 0 C A consensus_score=325.4 frequency=1 major_base=A major_cov=42/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/54 RA 427 . NC_000913 2040433 0 C A consensus_score=244.1 frequency=1 major_base=A major_cov=50/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/25 RA 428 . NC_000913 2099484 0 G T bias_e_value=0.00992083 bias_p_value=2.13735e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=235.3 fisher_strand_p_value=8.85108e-11 frequency=2.764e-01 ks_quality_p_value=1 major_base=G major_cov=52/37 major_frequency=7.236e-01 minor_base=T minor_cov=0/34 new_cov=0/34 polymorphism_frequency=2.764e-01 polymorphism_score=12.2 prediction=polymorphism ref_cov=52/37 total_cov=52/71 RA 429 . NC_000913 2173363 0 C . bias_e_value=3755100 bias_p_value=0.809001 consensus_score=327.9 fisher_strand_p_value=0.479452 frequency=1 ks_quality_p_value=0.937717 major_base=. major_cov=34/38 major_frequency=9.863e-01 minor_base=C minor_cov=1/0 new_cov=34/38 polymorphism_frequency=9.863e-01 polymorphism_score=-0.7 prediction=consensus ref_cov=1/0 total_cov=36/38 RA 430 . NC_000913 2173364 0 C . bias_e_value=2629130 bias_p_value=0.566421 consensus_score=326.4 fisher_strand_p_value=0.233247 frequency=1 ks_quality_p_value=0.981406 major_base=. major_cov=34/38 major_frequency=9.730e-01 minor_base=C minor_cov=2/0 new_cov=34/38 polymorphism_frequency=9.730e-01 polymorphism_score=1.0 prediction=consensus ref_cov=2/0 total_cov=36/38 RA 431 . NC_000913 2175991 0 T A consensus_score=200.6 frequency=1 major_base=A major_cov=38/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/24 RA 432 . NC_000913 2188087 0 T C bias_e_value=3825300 bias_p_value=0.824125 consensus_score=418.2 fisher_strand_p_value=0.469027 frequency=1 ks_quality_p_value=1 major_base=C major_cov=60/52 major_frequency=9.912e-01 minor_base=A minor_cov=0/1 new_cov=60/52 polymorphism_frequency=9.912e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/53 RA 433 . NC_000913 2263441 0 C . bias_e_value=4641650 bias_p_value=1 consensus_score=343.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=44/28 major_frequency=9.863e-01 minor_base=C minor_cov=1/0 new_cov=44/28 polymorphism_frequency=9.863e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/0 total_cov=45/28 RA 434 . NC_000913 2280520 0 T G bias_e_value=4641360 bias_p_value=0.999938 consensus_score=344.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.988852 major_base=G major_cov=43/50 major_frequency=9.894e-01 minor_base=T minor_cov=0/1 new_cov=43/50 polymorphism_frequency=9.894e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=0/1 total_cov=43/51 RA 435 . NC_000913 2384808 0 C T bias_e_value=2697790 bias_p_value=0.581212 consensus_score=358.8 fisher_strand_p_value=0.239093 frequency=1 ks_quality_p_value=1 major_base=T major_cov=58/54 major_frequency=9.825e-01 minor_base=C minor_cov=0/2 new_cov=58/54 polymorphism_frequency=9.825e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=58/56 RA 436 . NC_000913 2410419 0 G A consensus_score=246.0 frequency=1 major_base=A major_cov=41/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/31 RA 437 . NC_000913 2484827 0 C T consensus_score=383.5 frequency=1 major_base=T major_cov=58/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/52 RA 438 . NC_000913 2700747 0 G A consensus_score=291.0 frequency=1 major_base=A major_cov=41/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/39 RA 439 . NC_000913 2748396 0 G A consensus_score=322.0 frequency=1 major_base=A major_cov=38/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/51 RA 440 . NC_000913 2755866 0 G A bias_e_value=0.215899 bias_p_value=4.65135e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=136.3 fisher_strand_p_value=2.22293e-09 frequency=2.714e-01 ks_quality_p_value=1 major_base=G major_cov=12/39 major_frequency=7.286e-01 minor_base=A minor_cov=19/0 new_cov=19/0 polymorphism_frequency=2.714e-01 polymorphism_score=10.4 prediction=polymorphism ref_cov=12/39 total_cov=32/39 RA 441 . NC_000913 2756976 0 G A consensus_score=293.6 frequency=1 major_base=A major_cov=40/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/47 RA 442 . NC_000913 2780060 0 G A bias_e_value=2371390 bias_p_value=0.510894 consensus_score=361.2 fisher_strand_p_value=0.193241 frequency=1 ks_quality_p_value=1 major_base=A major_cov=58/44 major_frequency=9.808e-01 minor_base=G minor_cov=0/2 new_cov=58/44 polymorphism_frequency=9.808e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=58/46 RA 443 . NC_000913 2792209 0 G A consensus_score=145.3 frequency=1 major_base=A major_cov=30/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/15 RA 444 . NC_000913 2800435 0 G A consensus_score=269.2 frequency=1 major_base=A major_cov=38/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/36 RA 445 . NC_000913 2810925 0 G A consensus_score=333.8 frequency=1 major_base=A major_cov=34/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/58 RA 446 . NC_000913 2817850 0 G A bias_e_value=3965180 bias_p_value=0.85426 consensus_score=224.6 fisher_strand_p_value=0.511271 frequency=1 ks_quality_p_value=1 major_base=A major_cov=25/48 major_frequency=8.690e-01 minor_base=G minor_cov=5/6 new_cov=25/48 polymorphism_frequency=8.690e-01 polymorphism_score=11.4 prediction=consensus ref_cov=5/6 total_cov=30/54 RA 447 . NC_000913 2825328 0 G A bias_e_value=4641240 bias_p_value=0.999912 consensus_score=234.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.98676 major_base=A major_cov=38/35 major_frequency=9.865e-01 minor_base=C minor_cov=1/0 new_cov=38/35 polymorphism_frequency=9.865e-01 polymorphism_score=-6.4 prediction=consensus ref_cov=0/0 total_cov=39/35 RA 448 . NC_000913 2841238 0 G A consensus_score=341.0 frequency=1 major_base=A major_cov=31/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/63 RA 449 . NC_000913 2863773 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=206.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=18/40 major_frequency=9.831e-01 minor_base=G minor_cov=0/1 new_cov=18/40 polymorphism_frequency=9.831e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=19/41 RA 450 . NC_000913 2878077 0 C T bias_e_value=3853940 bias_p_value=0.830296 consensus_score=141.2 fisher_strand_p_value=0.477273 frequency=1 ks_quality_p_value=1 major_base=T major_cov=23/20 major_frequency=9.773e-01 minor_base=C minor_cov=0/1 new_cov=23/20 polymorphism_frequency=9.773e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=23/21 RA 451 . NC_000913 2889365 0 C T consensus_score=241.1 frequency=1 major_base=T major_cov=38/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/31 RA 452 . NC_000913 2905825 0 C T consensus_score=419.8 frequency=1 major_base=T major_cov=46/77 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/77 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/77 RA 453 . NC_000913 2926292 0 C T consensus_score=288.5 frequency=1 major_base=T major_cov=48/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/32 RA 454 . NC_000913 2990480 0 C A bias_e_value=31.9956 bias_p_value=6.89315e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=155.2 fisher_strand_p_value=4.40895e-07 frequency=3.301e-01 ks_quality_p_value=1 major_base=C major_cov=34/35 major_frequency=6.699e-01 minor_base=A minor_cov=33/1 new_cov=33/1 polymorphism_frequency=3.301e-01 polymorphism_score=13.2 prediction=polymorphism ref_cov=34/35 total_cov=67/36 RA 455 . NC_000913 3032307 0 C T bias_e_value=0.0401093 bias_p_value=8.64116e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=148.4 fisher_strand_p_value=3.80859e-10 frequency=2.584e-01 ks_quality_p_value=1 major_base=C major_cov=19/47 major_frequency=7.416e-01 minor_base=T minor_cov=23/0 new_cov=23/0 polymorphism_frequency=2.584e-01 polymorphism_score=23.3 prediction=polymorphism ref_cov=19/47 total_cov=42/47 RA 456 . NC_000913 3088010 0 C T bias_e_value=3881650 bias_p_value=0.836265 consensus_score=347.7 fisher_strand_p_value=0.485437 frequency=1 ks_quality_p_value=1 major_base=T major_cov=49/53 major_frequency=9.903e-01 minor_base=C minor_cov=1/0 new_cov=49/53 polymorphism_frequency=9.903e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=50/53 RA 457 . NC_000913 3088011 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=346.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=50/52 major_frequency=9.903e-01 minor_base=G minor_cov=0/1 new_cov=50/52 polymorphism_frequency=9.903e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/53 RA 458 . NC_000913 3207549 0 G . consensus_score=409.2 frequency=1 major_base=. major_cov=40/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/45 RA 459 . NC_000913 3270143 0 C T bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=89.2 fisher_strand_p_value=1 frequency=2.340e-01 ks_quality_p_value=1 major_base=C major_cov=6/30 major_frequency=7.660e-01 minor_base=T minor_cov=1/10 new_cov=1/10 polymorphism_frequency=2.340e-01 polymorphism_score=11.9 prediction=polymorphism ref_cov=6/30 total_cov=7/40 RA 460 . NC_000913 3336411 0 G A bias_e_value=4641570 bias_p_value=0.999982 consensus_score=319.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.994046 major_base=A major_cov=45/46 major_frequency=9.891e-01 minor_base=G minor_cov=0/1 new_cov=45/46 polymorphism_frequency=9.891e-01 polymorphism_score=-6.0 prediction=consensus ref_cov=0/1 total_cov=45/47 RA 461 . NC_000913 3336412 0 A T bias_e_value=4640790 bias_p_value=0.999815 consensus_score=304.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.980836 major_base=T major_cov=45/46 major_frequency=9.891e-01 minor_base=A minor_cov=0/1 new_cov=45/46 polymorphism_frequency=9.891e-01 polymorphism_score=-3.2 prediction=consensus ref_cov=0/1 total_cov=45/47 RA 462 . NC_000913 3367944 0 G A consensus_score=242.8 frequency=1 major_base=A major_cov=33/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/37 RA 463 . NC_000913 3388041 0 T G consensus_score=200.4 frequency=1 major_base=G major_cov=29/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/26 RA 464 . NC_000913 3399929 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=290.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=43/44 major_frequency=9.886e-01 minor_base=C minor_cov=1/0 new_cov=43/44 polymorphism_frequency=9.886e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/44 RA 465 . NC_000913 3436697 0 G A consensus_score=255.1 frequency=1 major_base=A major_cov=27/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/42 RA 466 . NC_000913 3449779 0 G A consensus_score=250.6 frequency=1 major_base=A major_cov=35/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/36 RA 467 . NC_000913 3468768 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=239.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=36/35 major_frequency=9.861e-01 minor_base=C minor_cov=0/1 new_cov=36/35 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=36/36 RA 468 . NC_000913 3474425 0 T C consensus_score=283.0 frequency=1 major_base=C major_cov=46/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/31 RA 469 . NC_000913 3543877 0 G A bias_e_value=3687500 bias_p_value=0.794438 consensus_score=305.4 fisher_strand_p_value=0.431818 frequency=1 ks_quality_p_value=1 major_base=A major_cov=37/50 major_frequency=9.886e-01 minor_base=C minor_cov=1/0 new_cov=37/50 polymorphism_frequency=9.886e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/50 RA 470 . NC_000913 3560455 1 . G consensus_score=302.1 frequency=1 major_base=G major_cov=43/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/40 RA 471 . NC_000913 3629921 0 C T consensus_score=191.5 frequency=1 major_base=T major_cov=24/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/31 RA 472 . NC_000913 3682515 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=201.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=26/34 major_frequency=9.836e-01 minor_base=G minor_cov=0/1 new_cov=26/34 polymorphism_frequency=9.836e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/35 RA 473 . NC_000913 3696909 0 G A consensus_score=350.9 frequency=1 major_base=A major_cov=49/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/51 RA 474 . NC_000913 3707947 0 C A consensus_score=374.8 frequency=1 major_base=A major_cov=71/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=71/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=71/38 RA 475 . NC_000913 3725176 0 T G consensus_score=240.7 frequency=1 major_base=G major_cov=38/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/29 RA 476 . NC_000913 3761230 0 G A consensus_score=245.1 frequency=1 major_base=A major_cov=37/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/35 RA 477 . NC_000913 3771979 0 G T consensus_score=410.5 frequency=1 major_base=T major_cov=63/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=63/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=63/51 RA 478 . NC_000913 3815883 1 . C bias_e_value=4641630 bias_p_value=0.999994 consensus_score=312.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996643 major_base=C major_cov=34/49 major_frequency=9.651e-01 minor_base=. minor_cov=1/2 new_cov=34/49 polymorphism_frequency=9.651e-01 polymorphism_score=4.6 prediction=consensus ref_cov=1/2 total_cov=36/51 RA 479 . NC_000913 3823162 0 C T consensus_score=241.0 frequency=1 major_base=T major_cov=20/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/55 RA 480 . NC_000913 3869637 0 C A bias_e_value=3787150 bias_p_value=0.815906 consensus_score=245.6 fisher_strand_p_value=0.458333 frequency=1 ks_quality_p_value=1 major_base=A major_cov=32/39 major_frequency=9.861e-01 minor_base=C minor_cov=1/0 new_cov=32/39 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=33/40 RA 481 . NC_000913 3878536 0 G A consensus_score=212.2 frequency=1 major_base=A major_cov=12/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/46 RA 482 . NC_000913 3883678 0 G A consensus_score=315.1 frequency=1 major_base=A major_cov=58/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/32 RA 483 . NC_000913 3911533 0 C A bias_e_value=0.00214881 bias_p_value=4.62941e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=167.8 fisher_strand_p_value=1.79842e-11 frequency=3.445e-01 ks_quality_p_value=1 major_base=C major_cov=34/44 major_frequency=6.555e-01 minor_base=A minor_cov=41/0 new_cov=41/0 polymorphism_frequency=3.445e-01 polymorphism_score=17.5 prediction=polymorphism ref_cov=34/44 total_cov=75/44 RA 484 . NC_000913 3912074 0 G A consensus_score=303.2 frequency=1 major_base=A major_cov=33/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/54 RA 485 . NC_000913 3999664 0 C T consensus_score=190.5 frequency=1 major_base=T major_cov=31/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/25 RA 486 . NC_000913 4009698 0 G A consensus_score=216.2 frequency=1 major_base=A major_cov=25/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/38 RA 487 . NC_000913 4012448 0 T C consensus_score=210.4 frequency=1 major_base=C major_cov=28/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/31 RA 488 . NC_000913 4012454 0 A . bias_e_value=4641570 bias_p_value=0.999983 consensus_score=255.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.994173 major_base=. major_cov=28/27 major_frequency=9.821e-01 minor_base=A minor_cov=0/1 new_cov=28/27 polymorphism_frequency=9.821e-01 polymorphism_score=-2.0 prediction=consensus ref_cov=0/1 total_cov=28/28 RA 489 . NC_000913 4017197 0 C T consensus_score=314.0 frequency=1 major_base=T major_cov=49/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/45 RA 490 . NC_000913 4084903 0 T G consensus_score=187.5 frequency=1 major_base=G major_cov=21/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/36 RA 491 . NC_000913 4092703 0 A G consensus_score=227.7 frequency=1 major_base=G major_cov=32/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/31 RA 492 . NC_000913 4143377 0 C T consensus_score=220.8 frequency=1 major_base=T major_cov=32/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/31 RA 493 . NC_000913 4156839 0 G A consensus_score=225.5 frequency=1 major_base=A major_cov=38/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/31 RA 494 . NC_000913 4157116 0 A . bias_e_value=2758300 bias_p_value=0.59425 consensus_score=332.7 fisher_strand_p_value=0.248612 frequency=1 ks_quality_p_value=0.998859 major_base=. major_cov=33/38 major_frequency=9.595e-01 minor_base=A minor_cov=0/3 new_cov=33/38 polymorphism_frequency=9.595e-01 polymorphism_score=7.3 prediction=consensus ref_cov=0/3 total_cov=33/41 RA 495 . NC_000913 4208132 0 G A consensus_score=242.3 frequency=1 major_base=A major_cov=41/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/48 RA 496 . NC_000913 4223638 0 T C consensus_score=321.7 frequency=1 major_base=C major_cov=49/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/40 RA 497 . NC_000913 4293781 0 G A consensus_score=289.9 frequency=1 major_base=A major_cov=40/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/45 RA 498 . NC_000913 4293782 0 C T consensus_score=289.4 frequency=1 major_base=T major_cov=40/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/45 RA 499 . NC_000913 4296268 0 T C bias_e_value=3513040 bias_p_value=0.756851 consensus_reject=FREQUENCY_CUTOFF consensus_score=47.3 fisher_strand_p_value=0.423458 frequency=2.500e-01 ks_quality_p_value=0.920044 major_base=T major_cov=10/14 major_frequency=7.500e-01 minor_base=C minor_cov=5/3 new_cov=5/3 polymorphism_frequency=2.500e-01 polymorphism_score=18.9 prediction=polymorphism ref_cov=10/14 total_cov=16/17 RA 500 . NC_000913 4296380 1 . C bias_e_value=4641650 bias_p_value=1 consensus_score=153.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=22/26 major_frequency=9.412e-01 minor_base=T minor_cov=1/2 new_cov=22/26 polymorphism_frequency=9.412e-01 polymorphism_score=-1.3 prediction=consensus ref_cov=0/0 total_cov=23/28 RA 501 . NC_000913 4296380 2 . G consensus_score=165.8 frequency=1 major_base=G major_cov=23/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/28 RA 502 . NC_000913 4325644 0 C T consensus_score=240.6 frequency=1 major_base=T major_cov=19/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/54 RA 503 . NC_000913 4425688 0 C A consensus_score=264.2 frequency=1 major_base=A major_cov=43/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/33 RA 504 . NC_000913 4425696 0 C A consensus_score=248.5 frequency=1 major_base=A major_cov=40/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/32 RA 505 . NC_000913 4436956 0 C T consensus_score=219.9 frequency=1 major_base=T major_cov=28/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/33 RA 506 . NC_000913 4436957 0 C T consensus_score=220.4 frequency=1 major_base=T major_cov=28/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/33 RA 507 . NC_000913 4532409 0 T G consensus_score=249.6 frequency=1 major_base=G major_cov=34/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/35 RA 508 . NC_000913 4546601 0 C T consensus_score=424.0 frequency=1 major_base=T major_cov=59/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/66 RA 509 . NC_000913 4578548 0 G A consensus_score=422.4 frequency=1 major_base=A major_cov=67/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=67/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=67/56 RA 510 . NC_000913 4585230 0 A G bias_e_value=3931320 bias_p_value=0.846965 consensus_score=212.2 fisher_strand_p_value=0.500565 frequency=1 ks_quality_p_value=1 major_base=G major_cov=26/32 major_frequency=9.667e-01 minor_base=T minor_cov=0/2 new_cov=26/32 polymorphism_frequency=9.667e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/34 RA 511 . NC_000913 4636925 0 G C consensus_score=273.5 frequency=1 major_base=C major_cov=41/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/34 RA 512 . NC_000913 4638240 0 G A bias_e_value=3997860 bias_p_value=0.861301 consensus_score=228.9 fisher_strand_p_value=0.521932 frequency=1 ks_quality_p_value=1 major_base=A major_cov=42/27 major_frequency=9.718e-01 minor_base=C minor_cov=2/0 new_cov=42/27 polymorphism_frequency=9.718e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/0 total_cov=44/27 MC 513 . NC_000913 167570 167573 0 0 left_inside_cov=0 left_outside_cov=83 right_inside_cov=0 right_outside_cov=83 MC 514 . NC_000913 257908 258683 768 0 left_inside_cov=0 left_outside_cov=121 right_inside_cov=0 right_outside_cov=121 MC 515 . NC_000913 1196344 1211431 0 0 left_inside_cov=24 left_outside_cov=25 right_inside_cov=24 right_outside_cov=26 MC 516 . NC_000913 1299499 1300697 1198 0 left_inside_cov=0 left_outside_cov=122 right_inside_cov=2 right_outside_cov=125 MC 517 . NC_000913 1588756 1589725 0 0 left_inside_cov=0 left_outside_cov=111 right_inside_cov=0 right_outside_cov=111 MC 518 . NC_000913 1704350 1704739 0 0 left_inside_cov=0 left_outside_cov=111 right_inside_cov=0 right_outside_cov=111 MC 519 . NC_000913 1978495 1979270 0 0 left_inside_cov=0 left_outside_cov=113 right_inside_cov=0 right_outside_cov=110 MC 520 . NC_000913 2238416 2238434 0 0 left_inside_cov=0 left_outside_cov=112 right_inside_cov=0 right_outside_cov=112 MC 521 . NC_000913 3423784 3424482 445 244 left_inside_cov=24 left_outside_cov=25 right_inside_cov=23 right_outside_cov=26 MC 522 . NC_000913 3708467 3708634 0 0 left_inside_cov=0 left_outside_cov=34 right_inside_cov=22 right_outside_cov=56 MC 523 . NC_000913 3762389 3765177 1685 1097 left_inside_cov=24 left_outside_cov=26 right_inside_cov=23 right_outside_cov=25 JC 524 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 coverage_minus=58 coverage_plus=55 flanking_left=300 flanking_right=300 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=294 key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0 max_left=292 max_left_minus=292 max_left_plus=243 max_min_left=148 max_min_left_minus=147 max_min_left_plus=148 max_min_right=147 max_min_right_minus=147 max_min_right_plus=144 max_pos_hash_score=588 max_right=289 max_right_minus=287 max_right_plus=289 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.45 new_junction_read_count=116 polymorphism_frequency=1.000e+00 pos_hash_score=64 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=113 JC 525 . NC_000913 167569 -1 NC_000913 167574 1 0 alignment_overlap=1 coverage_minus=25 coverage_plus=58 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=293 key=NC_000913__167569__-1__NC_000913__167573__1__1____300__300__0__0 max_left=295 max_left_minus=265 max_left_plus=295 max_min_left=149 max_min_left_minus=149 max_min_left_plus=138 max_min_right=138 max_min_right_minus=138 max_min_right_plus=133 max_pos_hash_score=586 max_right=296 max_right_minus=296 max_right_plus=281 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.04 new_junction_read_count=83 polymorphism_frequency=1.000e+00 pos_hash_score=61 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=1 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=83 JC 526 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=56 coverage_plus=62 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=286 key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0 max_left=290 max_left_minus=286 max_left_plus=290 max_min_left=143 max_min_left_minus=97 max_min_left_plus=143 max_min_right=143 max_min_right_minus=143 max_min_right_plus=135 max_pos_hash_score=572 max_right=283 max_right_minus=283 max_right_plus=278 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.56 new_junction_read_count=121 polymorphism_frequency=1.000e+00 pos_hash_score=73 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=118 JC 527 . NC_000913 349684 -1 NC_000913 350326 1 0 alignment_overlap=9 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.404e-02 junction_possible_overlap_registers=285 key=NC_000913__349684__-1__NC_000913__350317__1__9____300__300__0__0 max_left=30 max_left_minus=30 max_left_plus=30 max_min_left=30 max_min_left_minus=30 max_min_left_plus=30 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=570 max_right=71 max_right_minus=71 max_right_plus=71 neg_log10_pos_hash_p_value=7.1 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=6.404e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.44 side_1_overlap=9 side_1_possible_overlap_registers=294 side_1_read_count=35 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.07 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=83 side_2_redundant=0 total_non_overlap_reads=4 JC 528 . NC_000913 381260 1 NC_000913 789812 1 0 alignment_overlap=0 coverage_minus=55 coverage_plus=33 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__381260__1__NC_000913__789812__1__0____300__300__1__0 max_left=296 max_left_minus=255 max_left_plus=296 max_min_left=147 max_min_left_minus=147 max_min_left_plus=122 max_min_right=137 max_min_right_minus=137 max_min_right_plus=126 max_pos_hash_score=588 max_right=297 max_right_minus=297 max_right_plus=294 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.11 new_junction_read_count=89 polymorphism_frequency=9.887e-01 pos_hash_score=50 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=88 JC 529 . NC_000913 381260 1 NC_000913 1093485 -1 0 alignment_overlap=2 coverage_minus=57 coverage_plus=43 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=292 key=NC_000913__381260__1__NC_000913__1093487__-1__2____300__300__1__0 max_left=295 max_left_minus=290 max_left_plus=295 max_min_left=140 max_min_left_minus=135 max_min_left_plus=140 max_min_right=137 max_min_right_minus=137 max_min_right_plus=128 max_pos_hash_score=584 max_right=295 max_right_minus=295 max_right_plus=294 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.27 new_junction_read_count=101 polymorphism_frequency=1.000e+00 pos_hash_score=65 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=100 JC 530 . NC_000913 382590 -1 NC_000913 789816 -1 0 alignment_overlap=2 coverage_minus=45 coverage_plus=31 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=292 key=NC_000913__382590__-1__NC_000913__789818__-1__2____300__300__1__0 max_left=287 max_left_minus=277 max_left_plus=287 max_min_left=148 max_min_left_minus=139 max_min_left_plus=148 max_min_right=145 max_min_right_minus=145 max_min_right_plus=143 max_pos_hash_score=584 max_right=295 max_right_minus=295 max_right_plus=274 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.00 new_junction_read_count=79 polymorphism_frequency=1.000e+00 pos_hash_score=53 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=76 JC 531 . NC_000913 566774 -1 NC_000913 568036 1 0 alignment_overlap=2 coverage_minus=15 coverage_plus=12 flanking_left=300 flanking_right=300 frequency=4.100e-01 junction_possible_overlap_registers=292 key=NC_000913__566774__-1__NC_000913__568034__1__2____300__300__0__0 max_left=225 max_left_minus=225 max_left_plus=215 max_min_left=147 max_min_left_minus=146 max_min_left_plus=147 max_min_right=144 max_min_right_minus=144 max_min_right_plus=124 max_pos_hash_score=584 max_right=175 max_right_minus=175 max_right_plus=154 neg_log10_pos_hash_p_value=3.5 new_junction_coverage=0.67 new_junction_read_count=53 polymorphism_frequency=4.100e-01 pos_hash_score=15 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.88 side_1_overlap=2 side_1_possible_overlap_registers=294 side_1_read_count=70 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.05 side_2_overlap=0 side_2_possible_overlap_registers=292 side_2_read_count=83 side_2_redundant=0 total_non_overlap_reads=27 JC 532 . NC_000913 696506 -1 NC_000913 696619 1 0 alignment_overlap=77 coverage_minus=2 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.079e-01 junction_possible_overlap_registers=217 key=NC_000913__696506__-1__NC_000913__696542__1__77____300__300__0__0 max_left=167 max_left_minus=167 max_left_plus=113 max_min_left=101 max_min_left_minus=0 max_min_left_plus=101 max_min_right=110 max_min_right_minus=63 max_min_right_plus=110 max_pos_hash_score=434 max_right=198 max_right_minus=63 max_right_plus=198 neg_log10_pos_hash_p_value=4.9 new_junction_coverage=0.12 new_junction_read_count=7 polymorphism_frequency=1.079e-01 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.06 side_1_overlap=77 side_1_possible_overlap_registers=294 side_1_read_count=85 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.90 side_2_overlap=0 side_2_possible_overlap_registers=217 side_2_read_count=53 side_2_redundant=0 total_non_overlap_reads=7 JC 533 . NC_000913 696506 -1 NC_000913 697057 1 -45 alignment_overlap=-45 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=8.135e-02 junction_possible_overlap_registers=249 key=NC_000913__696506__-1__NC_000913__697057__1__-45__AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT__300__300__0__0 max_left=244 max_left_minus=244 max_left_plus=190 max_min_left=57 max_min_left_minus=57 max_min_left_plus=57 max_min_right=77 max_min_right_minus=18 max_min_right_plus=77 max_pos_hash_score=498 max_right=133 max_right_minus=133 max_right_plus=133 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.09 new_junction_read_count=6 polymorphism_frequency=8.135e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.06 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=85 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.94 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=75 side_2_redundant=0 total_non_overlap_reads=6 unique_read_sequence=AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT JC 534 . NC_000913 696567 -1 NC_000913 697083 1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.971e-02 junction_possible_overlap_registers=282 key=NC_000913__696567__-1__NC_000913__697071__1__12____300__300__0__0 max_left=120 max_left_minus=120 max_left_plus=51 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=62 max_min_right_minus=62 max_min_right_plus=34 max_pos_hash_score=564 max_right=62 max_right_minus=62 max_right_plus=34 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=3.971e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.89 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=71 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.00 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=77 side_2_redundant=0 total_non_overlap_reads=3 JC 535 . NC_000913 696741 -1 NC_000913 697135 1 0 alignment_overlap=78 coverage_minus=4 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1.235e-01 junction_possible_overlap_registers=216 key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0 max_left=219 max_left_minus=219 max_left_plus=167 max_min_left=6 max_min_left_minus=0 max_min_left_plus=6 max_min_right=55 max_min_right_minus=55 max_min_right_plus=55 max_pos_hash_score=432 max_right=55 max_right_minus=55 max_right_plus=55 neg_log10_pos_hash_p_value=4.9 new_junction_coverage=0.12 new_junction_read_count=7 polymorphism_frequency=1.235e-01 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.74 side_1_overlap=78 side_1_possible_overlap_registers=294 side_1_read_count=59 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.95 side_2_overlap=0 side_2_possible_overlap_registers=216 side_2_read_count=56 side_2_redundant=0 total_non_overlap_reads=7 JC 536 . NC_000913 732239 -1 NC_000913 732420 1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=9.608e-02 junction_possible_overlap_registers=282 key=NC_000913__732239__-1__NC_000913__732408__1__12____300__300__0__0 max_left=274 max_left_minus=274 max_left_plus=237 max_min_left=118 max_min_left_minus=0 max_min_left_plus=118 max_min_right=51 max_min_right_minus=25 max_min_right_plus=51 max_pos_hash_score=564 max_right=247 max_right_minus=25 max_right_plus=247 neg_log10_pos_hash_p_value=6.5 new_junction_coverage=0.07 new_junction_read_count=5 polymorphism_frequency=9.608e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.59 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=47 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.64 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=49 side_2_redundant=0 total_non_overlap_reads=5 JC 537 . NC_000913 732239 -1 NC_000913 3622029 1 0 alignment_overlap=12 coverage_minus=3 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=1.426e-01 junction_possible_overlap_registers=282 key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0 max_left=274 max_left_minus=274 max_left_plus=237 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=81 max_min_right_minus=81 max_min_right_plus=51 max_pos_hash_score=564 max_right=81 max_right_minus=81 max_right_plus=51 neg_log10_pos_hash_p_value=7.0 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=1.426e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.59 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=47 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.04 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=3 side_2_redundant=0 total_non_overlap_reads=4 JC 538 . NC_000913 732239 -1 NC_000913 3765020 1 0 alignment_overlap=12 coverage_minus=3 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=1.402e-01 junction_possible_overlap_registers=282 key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0 max_left=274 max_left_minus=274 max_left_plus=237 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=81 max_min_right_minus=81 max_min_right_plus=51 max_pos_hash_score=564 max_right=81 max_right_minus=81 max_right_plus=51 neg_log10_pos_hash_p_value=7.0 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=1.402e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.59 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=47 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.05 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=4 side_2_redundant=0 total_non_overlap_reads=4 JC 539 . NC_000913 732408 1 NC_000913 3621836 -1 0 alignment_overlap=12 coverage_minus=3 coverage_plus=0 flanking_left=300 flanking_right=300 frequency=5.887e-02 junction_possible_overlap_registers=282 key=NC_000913__732408__1__NC_000913__3621848__-1__12____300__300__0__1 max_left=247 max_left_minus=247 max_left_plus=0 max_min_left=51 max_min_left_minus=51 max_min_left_plus=0 max_min_right=118 max_min_right_minus=118 max_min_right_plus=0 max_pos_hash_score=564 max_right=237 max_right_minus=237 max_right_plus=0 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=5.887e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.63 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=50 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=3 JC 540 . NC_000913 781222 -1 NC_000913 781653 1 0 alignment_overlap=76 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=8.401e-02 junction_possible_overlap_registers=218 key=NC_000913__781222__-1__NC_000913__781577__1__76____300__300__0__0 max_left=195 max_left_minus=195 max_left_plus=99 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=81 max_min_right_minus=81 max_min_right_plus=81 max_pos_hash_score=436 max_right=81 max_right_minus=81 max_right_plus=81 neg_log10_pos_hash_p_value=5.8 new_junction_coverage=0.07 new_junction_read_count=4 polymorphism_frequency=8.401e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.76 side_1_overlap=76 side_1_possible_overlap_registers=294 side_1_read_count=61 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.71 side_2_overlap=0 side_2_possible_overlap_registers=218 side_2_read_count=42 side_2_redundant=0 total_non_overlap_reads=4 JC 541 . NC_000913 781369 1 NC_000913 2521006 -1 -3 alignment_overlap=-3 coverage_minus=3 coverage_plus=0 flanking_left=300 flanking_right=300 frequency=4.847e-02 junction_possible_overlap_registers=291 key=NC_000913__781369__1__NC_000913__2521006__-1__-3__GAG__300__300__0__0 max_left=231 max_left_minus=231 max_left_plus=0 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=69 max_min_right_minus=69 max_min_right_plus=0 max_pos_hash_score=582 max_right=69 max_right_minus=69 max_right_plus=0 neg_log10_pos_hash_p_value=7.8 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=4.847e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.60 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=48 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.89 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=71 side_2_redundant=0 total_non_overlap_reads=3 unique_read_sequence=GAG JC 542 . NC_000913 781369 1 NC_000913 2521128 -1 -1 alignment_overlap=-1 coverage_minus=3 coverage_plus=0 flanking_left=300 flanking_right=300 frequency=5.423e-02 junction_possible_overlap_registers=293 key=NC_000913__781369__1__NC_000913__2521128__-1__-1__G__300__300__0__0 max_left=231 max_left_minus=231 max_left_plus=0 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=71 max_min_right_minus=71 max_min_right_plus=0 max_pos_hash_score=586 max_right=71 max_right_minus=71 max_right_plus=0 neg_log10_pos_hash_p_value=7.8 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=5.423e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.60 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=48 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.71 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=57 side_2_redundant=0 total_non_overlap_reads=3 unique_read_sequence=G JC 543 . NC_000913 781577 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=4 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=9.068e-02 junction_possible_overlap_registers=290 key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0 max_left=211 max_left_minus=85 max_left_plus=211 max_min_left=85 max_min_left_minus=85 max_min_left_plus=0 max_min_right=90 max_min_right_minus=0 max_min_right_plus=90 max_pos_hash_score=580 max_right=294 max_right_minus=294 max_right_plus=90 neg_log10_pos_hash_p_value=6.2 new_junction_coverage=0.08 new_junction_read_count=6 polymorphism_frequency=9.068e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=51 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.89 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=71 side_2_redundant=0 total_non_overlap_reads=6 unique_read_sequence=GAAG JC 544 . NC_000913 1093481 1 NC_000913 1651548 -1 0 alignment_overlap=0 coverage_minus=45 coverage_plus=39 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1093481__1__NC_000913__1651548__-1__0____300__300__0__1 max_left=299 max_left_minus=299 max_left_plus=274 max_min_left=148 max_min_left_minus=148 max_min_left_plus=146 max_min_right=150 max_min_right_minus=150 max_min_right_plus=142 max_pos_hash_score=588 max_right=284 max_right_minus=279 max_right_plus=284 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.06 new_junction_read_count=85 polymorphism_frequency=9.882e-01 pos_hash_score=52 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.01 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=84 JC 545 . NC_000913 1286906 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=2 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.480e-01 junction_possible_overlap_registers=274 key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=238 max_left_minus=220 max_left_plus=238 max_min_left=7 max_min_left_minus=0 max_min_left_plus=7 max_min_right=49 max_min_right_minus=49 max_min_right_plus=49 max_pos_hash_score=548 max_right=276 max_right_minus=49 max_right_plus=276 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.09 new_junction_read_count=7 polymorphism_frequency=1.480e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.63 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=50 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.46 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=34 side_2_redundant=0 total_non_overlap_reads=7 JC 546 . NC_000913 1287084 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=3 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.557e-01 junction_possible_overlap_registers=274 key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=260 max_left_minus=260 max_left_plus=168 max_min_left=13 max_min_left_minus=0 max_min_left_plus=13 max_min_right=105 max_min_right_minus=30 max_min_right_plus=105 max_pos_hash_score=548 max_right=276 max_right_minus=30 max_right_plus=276 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.09 new_junction_read_count=7 polymorphism_frequency=1.557e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.56 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=45 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.46 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=34 side_2_redundant=0 total_non_overlap_reads=7 JC 547 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=58 coverage_plus=59 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=290 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0 max_left=294 max_left_minus=284 max_left_plus=294 max_min_left=147 max_min_left_minus=139 max_min_left_plus=147 max_min_right=144 max_min_right_minus=134 max_min_right_plus=144 max_pos_hash_score=580 max_right=295 max_right_minus=287 max_right_plus=295 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.55 new_junction_read_count=122 polymorphism_frequency=1.000e+00 pos_hash_score=76 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=117 JC 548 . NC_000913 1397238 -1 NC_000913 1978494 -1 0 alignment_overlap=0 coverage_minus=59 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0 max_left=294 max_left_minus=286 max_left_plus=294 max_min_left=148 max_min_left_minus=148 max_min_left_plus=148 max_min_right=142 max_min_right_minus=138 max_min_right_plus=142 max_pos_hash_score=588 max_right=297 max_right_minus=297 max_right_plus=295 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.41 new_junction_read_count=113 polymorphism_frequency=1.000e+00 pos_hash_score=74 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=112 JC 549 . NC_000913 1588755 -1 NC_000913 1589726 1 0 alignment_overlap=0 coverage_minus=50 coverage_plus=58 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1588755__-1__NC_000913__1589726__1__0____300__300__0__0 max_left=298 max_left_minus=285 max_left_plus=298 max_min_left=124 max_min_left_minus=124 max_min_left_plus=102 max_min_right=139 max_min_right_minus=139 max_min_right_plus=121 max_pos_hash_score=588 max_right=298 max_right_minus=298 max_right_plus=298 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.39 new_junction_read_count=111 polymorphism_frequency=1.000e+00 pos_hash_score=71 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=108 JC 550 . NC_000913 1651548 -1 NC_000913 1651855 -1 0 alignment_overlap=0 coverage_minus=36 coverage_plus=29 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1651548__-1__NC_000913__1651855__-1__0____300__300__1__0 max_left=287 max_left_minus=279 max_left_plus=287 max_min_left=113 max_min_left_minus=95 max_min_left_plus=113 max_min_right=131 max_min_right_minus=114 max_min_right_plus=131 max_pos_hash_score=588 max_right=297 max_right_minus=297 max_right_plus=292 neg_log10_pos_hash_p_value=0.7 new_junction_coverage=0.86 new_junction_read_count=69 polymorphism_frequency=1.000e+00 pos_hash_score=40 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=65 JC 551 . NC_000913 1651851 1 NC_000913 2070271 -1 0 alignment_overlap=0 coverage_minus=38 coverage_plus=55 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1651851__1__NC_000913__2070271__-1__0____300__300__0__1 max_left=295 max_left_minus=295 max_left_plus=292 max_min_left=147 max_min_left_minus=142 max_min_left_plus=147 max_min_right=145 max_min_right_minus=133 max_min_right_plus=145 max_pos_hash_score=588 max_right=296 max_right_minus=296 max_right_plus=290 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.21 new_junction_read_count=97 polymorphism_frequency=1.000e+00 pos_hash_score=62 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=93 JC 552 . NC_000913 1704349 -1 NC_000913 1704740 1 0 alignment_overlap=2 coverage_minus=62 coverage_plus=46 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=292 key=NC_000913__1704349__-1__NC_000913__1704738__1__2____300__300__0__0 max_left=289 max_left_minus=289 max_left_plus=279 max_min_left=133 max_min_left_minus=133 max_min_left_plus=123 max_min_right=145 max_min_right_minus=145 max_min_right_plus=134 max_pos_hash_score=584 max_right=297 max_right_minus=297 max_right_plus=293 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.40 new_junction_read_count=111 polymorphism_frequency=1.000e+00 pos_hash_score=66 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=2 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=292 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=108 JC 553 . NC_000913 1979271 1 NC_000913 2102947 -1 0 alignment_overlap=0 coverage_minus=47 coverage_plus=59 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1 max_left=299 max_left_minus=294 max_left_plus=299 max_min_left=140 max_min_left_minus=129 max_min_left_plus=140 max_min_right=145 max_min_right_minus=145 max_min_right_plus=138 max_pos_hash_score=588 max_right=294 max_right_minus=294 max_right_plus=292 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.38 new_junction_read_count=110 polymorphism_frequency=1.000e+00 pos_hash_score=69 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=106 JC 554 . NC_000913 2238415 -1 NC_000913 2238435 1 0 alignment_overlap=0 coverage_minus=53 coverage_plus=54 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2238415__-1__NC_000913__2238435__1__0____300__300__0__0 max_left=292 max_left_minus=292 max_left_plus=292 max_min_left=146 max_min_left_minus=143 max_min_left_plus=146 max_min_right=149 max_min_right_minus=149 max_min_right_plus=147 max_pos_hash_score=588 max_right=292 max_right_minus=290 max_right_plus=292 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.40 new_junction_read_count=112 polymorphism_frequency=1.000e+00 pos_hash_score=75 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=107 JC 555 . NC_000913 2518116 -1 NC_000913 2518232 1 0 alignment_overlap=81 coverage_minus=4 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1.248e-01 junction_possible_overlap_registers=213 key=NC_000913__2518116__-1__NC_000913__2518151__1__81____300__300__0__0 max_left=209 max_left_minus=209 max_left_plus=69 max_min_left=69 max_min_left_minus=69 max_min_left_plus=69 max_min_right=98 max_min_right_minus=98 max_min_right_plus=0 max_pos_hash_score=426 max_right=209 max_right_minus=177 max_right_plus=209 neg_log10_pos_hash_p_value=4.4 new_junction_coverage=0.12 new_junction_read_count=7 polymorphism_frequency=1.248e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.90 side_1_overlap=81 side_1_possible_overlap_registers=294 side_1_read_count=72 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.79 side_2_overlap=0 side_2_possible_overlap_registers=213 side_2_read_count=46 side_2_redundant=0 total_non_overlap_reads=7 JC 556 . NC_000913 2521632 -1 NC_000913 2522077 1 0 alignment_overlap=10 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.070e-02 junction_possible_overlap_registers=284 key=NC_000913__2521632__-1__NC_000913__2522067__1__10____300__300__0__0 max_left=78 max_left_minus=78 max_left_plus=63 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=45 max_min_right_minus=45 max_min_right_plus=45 max_pos_hash_score=568 max_right=45 max_right_minus=45 max_right_plus=45 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=4.070e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.95 side_1_overlap=10 side_1_possible_overlap_registers=294 side_1_read_count=76 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.88 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=68 side_2_redundant=0 total_non_overlap_reads=3 JC 557 . NC_000913 2653419 -1 NC_000913 2653746 1 0 alignment_overlap=25 coverage_minus=3 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.005e-01 junction_possible_overlap_registers=269 key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0 max_left=268 max_left_minus=192 max_left_plus=268 max_min_left=123 max_min_left_minus=112 max_min_left_plus=123 max_min_right=83 max_min_right_minus=83 max_min_right_plus=6 max_pos_hash_score=538 max_right=233 max_right_minus=163 max_right_plus=233 neg_log10_pos_hash_p_value=5.4 new_junction_coverage=0.10 new_junction_read_count=7 polymorphism_frequency=1.005e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.84 side_1_overlap=25 side_1_possible_overlap_registers=294 side_1_read_count=67 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.88 side_2_overlap=0 side_2_possible_overlap_registers=269 side_2_read_count=64 side_2_redundant=0 total_non_overlap_reads=7 JC 558 . NC_000913 2817942 -1 NC_000913 2818492 1 0 alignment_overlap=20 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.506e-02 junction_possible_overlap_registers=274 key=NC_000913__2817942__-1__NC_000913__2818472__1__20____300__300__0__0 max_left=90 max_left_minus=90 max_left_plus=90 max_min_left=3 max_min_left_minus=0 max_min_left_plus=3 max_min_right=36 max_min_right_minus=36 max_min_right_plus=36 max_pos_hash_score=548 max_right=277 max_right_minus=36 max_right_plus=277 neg_log10_pos_hash_p_value=7.5 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=4.506e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.89 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=71 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.82 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=61 side_2_redundant=0 total_non_overlap_reads=3 JC 559 . NC_000913 2818275 -1 NC_000913 2818551 1 0 alignment_overlap=79 coverage_minus=5 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=2.051e-01 junction_possible_overlap_registers=215 key=NC_000913__2818275__-1__NC_000913__2818472__1__79____300__300__0__0 max_left=205 max_left_minus=205 max_left_plus=160 max_min_left=101 max_min_left_minus=101 max_min_left_plus=89 max_min_right=87 max_min_right_minus=87 max_min_right_plus=87 max_pos_hash_score=430 max_right=218 max_right_minus=137 max_right_plus=218 neg_log10_pos_hash_p_value=3.8 new_junction_coverage=0.17 new_junction_read_count=10 polymorphism_frequency=2.051e-01 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.49 side_1_overlap=79 side_1_possible_overlap_registers=294 side_1_read_count=39 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.84 side_2_overlap=0 side_2_possible_overlap_registers=215 side_2_read_count=49 side_2_redundant=0 total_non_overlap_reads=10 JC 560 . NC_000913 2878076 -1 NC_000913 2878446 1 -1 alignment_overlap=-1 coverage_minus=2 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=7.376e-02 junction_possible_overlap_registers=293 key=NC_000913__2878076__-1__NC_000913__2878446__1__-1__T__300__300__0__0 max_left=294 max_left_minus=294 max_left_plus=284 max_min_left=70 max_min_left_minus=70 max_min_left_plus=70 max_min_right=18 max_min_right_minus=4 max_min_right_plus=18 max_pos_hash_score=586 max_right=156 max_right_minus=156 max_right_plus=156 neg_log10_pos_hash_p_value=6.7 new_junction_coverage=0.06 new_junction_read_count=5 polymorphism_frequency=7.376e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.53 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=42 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.05 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=84 side_2_redundant=0 total_non_overlap_reads=5 unique_read_sequence=T JC 561 . NC_000913 2913392 1 NC_000913 2997691 -1 0 alignment_overlap=0 coverage_minus=30 coverage_plus=43 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1 max_left=295 max_left_minus=285 max_left_plus=295 max_min_left=137 max_min_left_minus=129 max_min_left_plus=137 max_min_right=145 max_min_right_minus=138 max_min_right_plus=145 max_pos_hash_score=588 max_right=297 max_right_minus=296 max_right_plus=297 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.91 new_junction_read_count=73 polymorphism_frequency=1.000e+00 pos_hash_score=42 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=73 JC 562 . NC_000913 2913396 -1 NC_000913 2996361 1 0 alignment_overlap=0 coverage_minus=41 coverage_plus=42 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1 max_left=295 max_left_minus=295 max_left_plus=280 max_min_left=148 max_min_left_minus=148 max_min_left_plus=141 max_min_right=149 max_min_right_minus=132 max_min_right_plus=149 max_pos_hash_score=588 max_right=284 max_right_minus=284 max_right_plus=271 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.09 new_junction_read_count=87 polymorphism_frequency=1.000e+00 pos_hash_score=56 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=83 JC 563 . NC_000913 3323962 -1 NC_000913 3324312 1 0 alignment_overlap=10 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.195e-02 junction_possible_overlap_registers=284 key=NC_000913__3323962__-1__NC_000913__3324302__1__10____300__300__0__0 max_left=205 max_left_minus=126 max_left_plus=205 max_min_left=126 max_min_left_minus=126 max_min_left_plus=126 max_min_right=8 max_min_right_minus=0 max_min_right_plus=8 max_pos_hash_score=568 max_right=150 max_right_minus=150 max_right_plus=150 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=3.195e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.18 side_1_overlap=10 side_1_possible_overlap_registers=294 side_1_read_count=94 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.18 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=91 side_2_redundant=0 total_non_overlap_reads=3 JC 564 . NC_000913 3469040 -1 NC_000913 3469344 1 0 alignment_overlap=20 coverage_minus=4 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=9.537e-02 junction_possible_overlap_registers=274 key=NC_000913__3469040__-1__NC_000913__3469324__1__20____300__300__0__0 max_left=215 max_left_minus=215 max_left_plus=193 max_min_left=57 max_min_left_minus=57 max_min_left_plus=57 max_min_right=87 max_min_right_minus=69 max_min_right_plus=87 max_pos_hash_score=548 max_right=164 max_right_minus=164 max_right_plus=164 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.11 new_junction_read_count=8 polymorphism_frequency=9.537e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.96 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=77 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.07 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=80 side_2_redundant=0 total_non_overlap_reads=8 JC 565 . NC_000913 3708382 -1 NC_000913 3708552 1 -1 alignment_overlap=-1 coverage_minus=0 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.957e-01 junction_possible_overlap_registers=293 key=NC_000913__3708382__-1__NC_000913__3708552__1__-1__T__300__300__0__0 max_left=172 max_left_minus=0 max_left_plus=172 max_min_left=139 max_min_left_minus=0 max_min_left_plus=139 max_min_right=127 max_min_right_minus=0 max_min_right_plus=127 max_pos_hash_score=586 max_right=239 max_right_minus=0 max_right_plus=239 neg_log10_pos_hash_p_value=7.2 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=1.957e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.38 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=30 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.04 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=3 side_2_redundant=0 total_non_overlap_reads=4 unique_read_sequence=T JC 566 . NC_000913 3708466 -1 NC_000913 3708635 1 0 alignment_overlap=108 coverage_minus=15 coverage_plus=19 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=186 key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0 max_left=170 max_left_minus=155 max_left_plus=170 max_min_left=89 max_min_left_minus=80 max_min_left_plus=89 max_min_right=92 max_min_right_minus=92 max_min_right_plus=92 max_pos_hash_score=372 max_right=187 max_right_minus=184 max_right_plus=187 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.67 new_junction_read_count=34 polymorphism_frequency=1.000e+00 pos_hash_score=27 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=108 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=186 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=34 JC 567 . NC_000913 3822646 1 NC_000913 3822651 -1 0 alignment_overlap=0 coverage_minus=24 coverage_plus=30 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0 max_left=296 max_left_minus=277 max_left_plus=296 max_min_left=146 max_min_left_minus=146 max_min_left_plus=122 max_min_right=145 max_min_right_minus=124 max_min_right_plus=145 max_pos_hash_score=588 max_right=288 max_right_minus=282 max_right_plus=288 neg_log10_pos_hash_p_value=1.1 new_junction_coverage=0.71 new_junction_read_count=57 polymorphism_frequency=9.421e-01 pos_hash_score=34 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.09 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=7 side_2_redundant=0 total_non_overlap_reads=54 JC 568 . NC_000913 4392437 -1 NC_000913 4392661 1 0 alignment_overlap=78 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.075e-02 junction_possible_overlap_registers=216 key=NC_000913__4392437__-1__NC_000913__4392583__1__78____300__300__0__0 max_left=195 max_left_minus=195 max_left_plus=118 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=108 max_min_right_minus=27 max_min_right_plus=108 max_pos_hash_score=432 max_right=108 max_right_minus=27 max_right_plus=108 neg_log10_pos_hash_p_value=6.4 new_junction_coverage=0.05 new_junction_read_count=3 polymorphism_frequency=5.075e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.84 side_1_overlap=78 side_1_possible_overlap_registers=294 side_1_read_count=67 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.07 side_2_overlap=0 side_2_possible_overlap_registers=216 side_2_read_count=63 side_2_redundant=0 total_non_overlap_reads=3 JC 569 . NC_000913 4542690 -1 NC_000913 4542986 -1 0 alignment_overlap=9 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.927e-02 junction_possible_overlap_registers=285 key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0 max_left=195 max_left_minus=195 max_left_plus=153 max_min_left=126 max_min_left_minus=0 max_min_left_plus=126 max_min_right=138 max_min_right_minus=115 max_min_right_plus=138 max_pos_hash_score=570 max_right=164 max_right_minus=115 max_right_plus=164 neg_log10_pos_hash_p_value=7.1 new_junction_coverage=0.06 new_junction_read_count=5 polymorphism_frequency=3.927e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.79 side_1_overlap=9 side_1_possible_overlap_registers=294 side_1_read_count=143 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.37 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=106 side_2_redundant=0 total_non_overlap_reads=5 UN 570 . 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