#=GENOME_DIFF	1.0
#=CREATED	06:58:07 04 Jun 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250516nextseq_run_rmdup/ME7919_rmdup_R1R2_ -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/ME7919_rmdup_R1.fastq.gz /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/ME7919_rmdup_R2.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/ME7919_rmdup_R1.fastq.gz
#=READSEQ	/ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/ME7919_rmdup_R2.fastq.gz
#=CONVERTED-BASES	507981000
#=CONVERTED-READS	1693270
#=INPUT-BASES	508085100
#=INPUT-READS	1693617
#=MAPPED-BASES	496357633
#=MAPPED-READS	1657246
SNP	1	125	NC_000913	33448	A
SNP	2	126	NC_000913	38632	A
SNP	3	128	NC_000913	60007	A
SNP	4	129	NC_000913	82494	C
SNP	5	130	NC_000913	85004	A
SNP	6	131	NC_000913	87278	A
SNP	7	132	NC_000913	94970	A
SNP	8	133	NC_000913	95733	A
SNP	9	135	NC_000913	151033	A
SNP	10	136	NC_000913	161553	A
SNP	11	137	NC_000913	172988	A
SNP	12	138	NC_000913	182975	T
SNP	13	139	NC_000913	199860	A
DEL	14	274,282	NC_000913	257908	776
SNP	15	140	NC_000913	279802	A
SNP	16	141	NC_000913	284709	A
SNP	17	142	NC_000913	285196	A
SNP	18	143	NC_000913	288170	A
SNP	19	144	NC_000913	458316	A
SNP	20	145	NC_000913	559893	A
DEL	21	275,283	NC_000913	574454	137	mediated=IS5
SNP	22	147	NC_000913	864722	G
SNP	23	148	NC_000913	1093359	G
SNP	24	151	NC_000913	1180048	G
MOB	25	287,288	NC_000913	1230017	IS2	-1	5
SNP	26	153	NC_000913	1337394	G
SNP	27	154	NC_000913	1381086	T
SNP	28	155	NC_000913	1400600	T
SNP	29	156	NC_000913	1421263	T
SNP	30	157	NC_000913	1423344	A
SNP	31	158	NC_000913	1516393	T
SNP	32	159	NC_000913	1524975	T
SNP	33	160	NC_000913	1528004	T
SNP	34	161	NC_000913	1652331	C
MOB	35	291,292	NC_000913	1668262	IS2	-1	5
DEL	36	276,293	NC_000913	1978503	776
INS	37	165	NC_000913	2039654	C	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=C
SNP	38	166	NC_000913	2107809	T
SNP	39	167	NC_000913	2144034	T
SNP	40	168	NC_000913	2149988	T
SNP	41	169	NC_000913	2159187	C
SNP	42	170	NC_000913	2165412	T
DEL	43	277,296	NC_000913	2171429	6547	mediated=IS3
SNP	44	171	NC_000913	2197779	T
SNP	45	172	NC_000913	2216654	T
SNP	46	173	NC_000913	2260023	T
SNP	47	174	NC_000913	2261163	T
SNP	48	175	NC_000913	2267551	A
MOB	49	294,295	NC_000913	2406780	IS1	-1	8
SNP	50	177	NC_000913	2456751	A
SNP	51	182	NC_000913	2861081	T
SNP	52	183	NC_000913	2867455	C
SNP	53	185	NC_000913	2882934	T
SNP	54	186	NC_000913	2950012	T
SNP	55	187	NC_000913	2964821	G
SNP	56	188	NC_000913	2967599	T
SNP	57	189	NC_000913	2990250	T
SNP	58	191	NC_000913	3022584	T
SNP	59	192	NC_000913	3023159	T
SNP	60	193	NC_000913	3028355	T
SNP	61	194	NC_000913	3031244	T
SNP	62	195	NC_000913	3038813	T
SNP	63	196	NC_000913	3051427	T
SNP	64	199	NC_000913	3055383	T
SNP	65	200	NC_000913	3061803	T
SNP	66	201	NC_000913	3092276	T
SNP	67	202	NC_000913	3111071	T
SNP	68	204	NC_000913	3116060	T
SNP	69	205	NC_000913	3125729	T
SNP	70	206	NC_000913	3137964	T
SNP	71	207	NC_000913	3142761	T
SNP	72	208	NC_000913	3148786	T
SNP	73	209	NC_000913	3176283	T
SNP	74	210	NC_000913	3195554	T
SNP	75	211	NC_000913	3200748	T
SNP	76	212	NC_000913	3215594	T
SNP	77	213	NC_000913	3215671	T
SNP	78	214	NC_000913	3239705	T
SNP	79	215	NC_000913	3248851	T
SNP	80	216	NC_000913	3268718	A
SNP	81	217	NC_000913	3308639	A
SNP	82	218	NC_000913	3317041	A
SNP	83	219	NC_000913	3354491	G
SNP	84	221	NC_000913	3474425	G
SNP	85	222	NC_000913	3533224	C
SNP	86	223	NC_000913	3549226	T
INS	87	224	NC_000913	3560455	G
DEL	88	280,301	NC_000913	3582125	1303	mediated=IS1
SNP	89	232	NC_000913	3942092	T
MOB	90	304,305	NC_000913	3948343	IS2	-1	5
SNP	91	233	NC_000913	4038529	A
SNP	92	234	NC_000913	4103889	A
SNP	93	236	NC_000913	4115937	A
SNP	94	238	NC_000913	4183786	A
INS	95	240,241	NC_000913	4296381	GC
SNP	96	245	NC_000913	4467310	A
SNP	97	246	NC_000913	4468660	A
SNP	98	247	NC_000913	4471869	A
SNP	99	248	NC_000913	4479787	G
SNP	100	249	NC_000913	4492454	A
SNP	101	250	NC_000913	4500990	A
SNP	102	251	NC_000913	4507161	A
SNP	103	252	NC_000913	4509571	T
SNP	104	253	NC_000913	4518426	A
SNP	105	254	NC_000913	4520172	A
SNP	106	255	NC_000913	4522864	A
SNP	107	256	NC_000913	4531353	A
SNP	108	257	NC_000913	4532864	A
SNP	109	259	NC_000913	4543654	A
SNP	110	260	NC_000913	4551644	A
SNP	111	261	NC_000913	4556867	A
SNP	112	262	NC_000913	4562404	A
SNP	113	263	NC_000913	4570961	A
SNP	114	264	NC_000913	4583948	A
SNP	115	265	NC_000913	4590986	A
SNP	116	266	NC_000913	4600647	A
SNP	117	267	NC_000913	4610488	A
INS	118	312	NC_000913	4617562	CAACTTCCCACACGGTAAC	repeat_length=19	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CAACTTCCCACACGGTAAC
SNP	119	268	NC_000913	4625303	A
SNP	120	270	NC_000913	4630742	A
SNP	121	271	NC_000913	4631251	A
SNP	122	272	NC_000913	4632689	A
SNP	123	273	NC_000913	4637813	A
RA	124	.	NC_000913	12152	0	G	T	bias_e_value=4.66706e-08	bias_p_value=1.00547e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=499.7	fisher_strand_p_value=2.7295e-16	frequency=2.459e-01	ks_quality_p_value=1	major_base=G	major_cov=96/88	major_frequency=7.541e-01	minor_base=T	minor_cov=0/60	new_cov=0/60	polymorphism_frequency=2.459e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=96/88	total_cov=97/148
RA	125	.	NC_000913	33448	0	G	A	consensus_score=302.1	frequency=1	major_base=A	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	126	.	NC_000913	38632	0	G	A	consensus_score=429.9	frequency=1	major_base=A	major_cov=64/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/55
RA	127	.	NC_000913	58065	0	C	A	bias_e_value=3.64988e-05	bias_p_value=7.86332e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.1	fisher_strand_p_value=2.62382e-13	frequency=3.304e-01	ks_quality_p_value=1	major_base=C	major_cov=25/50	major_frequency=6.696e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.304e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=25/50	total_cov=62/50
RA	128	.	NC_000913	60007	0	G	A	consensus_score=319.1	frequency=1	major_base=A	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	129	.	NC_000913	82494	0	A	C	consensus_score=455.1	frequency=1	major_base=C	major_cov=59/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/58
RA	130	.	NC_000913	85004	0	G	A	consensus_score=449.7	frequency=1	major_base=A	major_cov=42/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/77
RA	131	.	NC_000913	87278	0	G	A	consensus_score=365.1	frequency=1	major_base=A	major_cov=53/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/52
RA	132	.	NC_000913	94970	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=330.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/52	major_frequency=9.888e-01	minor_base=G	minor_cov=0/1	new_cov=36/52	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/53
RA	133	.	NC_000913	95733	0	G	A	consensus_score=320.8	frequency=1	major_base=A	major_cov=53/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/40
RA	134	.	NC_000913	141849	0	C	A	bias_e_value=4.75876	bias_p_value=1.02523e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.3	fisher_strand_p_value=5.80472e-08	frequency=2.581e-01	ks_quality_p_value=1	major_base=C	major_cov=48/44	major_frequency=7.419e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.581e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=48/44	total_cov=80/44
RA	135	.	NC_000913	151033	0	G	A	consensus_score=475.9	frequency=1	major_base=A	major_cov=71/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/60
RA	136	.	NC_000913	161553	0	G	A	consensus_score=215.8	frequency=1	major_base=A	major_cov=15/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/46
RA	137	.	NC_000913	172988	0	G	A	consensus_score=278.6	frequency=1	major_base=A	major_cov=51/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/32
RA	138	.	NC_000913	182975	0	C	T	consensus_score=348.0	frequency=1	major_base=T	major_cov=51/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/45
RA	139	.	NC_000913	199860	0	G	A	consensus_score=408.8	frequency=1	major_base=A	major_cov=64/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/49
RA	140	.	NC_000913	279802	0	G	A	bias_e_value=4028510	bias_p_value=0.867904	consensus_score=209.4	fisher_strand_p_value=0.532242	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=39/23	major_frequency=9.688e-01	minor_base=C	minor_cov=2/0	new_cov=39/23	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/23
RA	141	.	NC_000913	284709	0	G	A	consensus_score=198.6	frequency=1	major_base=A	major_cov=42/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/16
RA	142	.	NC_000913	285196	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=429.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=66/61	major_frequency=9.922e-01	minor_base=C	minor_cov=1/0	new_cov=66/61	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/61
RA	143	.	NC_000913	288170	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=196.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=25/33	major_frequency=9.831e-01	minor_base=G	minor_cov=0/1	new_cov=25/33	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=25/34
RA	144	.	NC_000913	458316	0	G	A	consensus_score=400.6	frequency=1	major_base=A	major_cov=48/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/66
RA	145	.	NC_000913	559893	0	G	A	consensus_score=442.8	frequency=1	major_base=A	major_cov=59/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/62
RA	146	.	NC_000913	847955	0	G	A	bias_e_value=0.0521978	bias_p_value=1.12455e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.1	fisher_strand_p_value=5.01742e-10	frequency=2.705e-01	ks_quality_p_value=1	major_base=G	major_cov=51/38	major_frequency=7.295e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.705e-01	polymorphism_score=44.5	prediction=polymorphism	ref_cov=51/38	total_cov=51/72
RA	147	.	NC_000913	864722	0	A	G	consensus_score=191.6	frequency=1	major_base=G	major_cov=22/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/33
RA	148	.	NC_000913	1093359	0	C	G	bias_e_value=4113840	bias_p_value=0.886288	consensus_score=444.4	fisher_strand_p_value=0.562753	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=34/89	major_frequency=9.762e-01	minor_base=T	minor_cov=0/3	new_cov=34/89	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/92
RA	149	.	NC_000913	1097118	0	C	A	bias_e_value=407956	bias_p_value=0.0878904	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.5	fisher_strand_p_value=0.0173995	frequency=2.353e-01	ks_quality_p_value=1	major_base=C	major_cov=4/22	major_frequency=7.647e-01	minor_base=A	minor_cov=5/3	new_cov=5/3	polymorphism_frequency=2.353e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=4/22	total_cov=9/25
RA	150	.	NC_000913	1097158	0	C	T	bias_e_value=847073	bias_p_value=0.182494	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.1	fisher_strand_p_value=0.057221	frequency=2.692e-01	ks_quality_p_value=0.774869	major_base=C	major_cov=3/16	major_frequency=7.308e-01	minor_base=T	minor_cov=4/3	new_cov=4/3	polymorphism_frequency=2.692e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=3/16	total_cov=7/19
RA	151	.	NC_000913	1180048	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=252.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999548	major_base=G	major_cov=33/33	major_frequency=9.851e-01	minor_base=C	minor_cov=0/1	new_cov=33/33	polymorphism_frequency=9.851e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	152	.	NC_000913	1334966	0	A	C	bias_e_value=0.166935	bias_p_value=3.59645e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.1	fisher_strand_p_value=1.69688e-09	frequency=2.906e-01	ks_quality_p_value=1	major_base=A	major_cov=38/45	major_frequency=7.094e-01	minor_base=C	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.906e-01	polymorphism_score=32.8	prediction=polymorphism	ref_cov=38/45	total_cov=72/45
RA	153	.	NC_000913	1337394	0	A	G	consensus_score=252.3	frequency=1	major_base=G	major_cov=42/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/25
RA	154	.	NC_000913	1381086	0	C	T	bias_e_value=3882580	bias_p_value=0.836465	consensus_score=261.0	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/36	major_frequency=9.857e-01	minor_base=C	minor_cov=1/0	new_cov=33/36	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/36
RA	155	.	NC_000913	1400600	0	C	T	consensus_score=400.9	frequency=1	major_base=T	major_cov=49/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/63
RA	156	.	NC_000913	1421263	0	C	T	consensus_score=481.1	frequency=1	major_base=T	major_cov=88/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=88/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=88/36
RA	157	.	NC_000913	1423344	0	G	A	consensus_score=297.1	frequency=1	major_base=A	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	158	.	NC_000913	1516393	0	C	T	consensus_score=223.1	frequency=1	major_base=T	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	159	.	NC_000913	1524975	0	C	T	consensus_score=316.3	frequency=1	major_base=T	major_cov=37/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/54
RA	160	.	NC_000913	1528004	0	C	T	consensus_score=268.3	frequency=1	major_base=T	major_cov=15/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/64
RA	161	.	NC_000913	1652331	0	T	C	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=416.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998629	major_base=C	major_cov=57/50	major_frequency=9.817e-01	minor_base=T	minor_cov=1/1	new_cov=57/50	polymorphism_frequency=9.817e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/1	total_cov=58/51
RA	162	.	NC_000913	1812509	0	G	T	bias_e_value=0.000223278	bias_p_value=4.81032e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.5	fisher_strand_p_value=1.71227e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=62/28	major_frequency=7.500e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.500e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=62/28	total_cov=62/58
RA	163	.	NC_000913	1820763	0	G	T	bias_e_value=125.714	bias_p_value=2.7084e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.3	fisher_strand_p_value=1.91169e-06	frequency=3.085e-01	ks_quality_p_value=1	major_base=G	major_cov=29/36	major_frequency=6.915e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.085e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=29/36	total_cov=29/65
RA	164	.	NC_000913	1922815	0	C	A	bias_e_value=1326390	bias_p_value=0.285758	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.5	fisher_strand_p_value=0.0814702	frequency=3.548e-01	ks_quality_p_value=1	major_base=C	major_cov=21/39	major_frequency=6.452e-01	minor_base=A	minor_cov=18/15	new_cov=18/15	polymorphism_frequency=3.548e-01	polymorphism_score=28.5	prediction=polymorphism	ref_cov=21/39	total_cov=39/54
RA	165	.	NC_000913	2039654	1	.	C	bias_e_value=4527470	bias_p_value=0.9754	consensus_score=342.6	fisher_strand_p_value=0.786551	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=37/49	major_frequency=8.515e-01	minor_base=.	minor_cov=7/8	new_cov=37/49	polymorphism_frequency=8.515e-01	polymorphism_score=54.5	prediction=consensus	ref_cov=7/8	total_cov=45/57
RA	166	.	NC_000913	2107809	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=472.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=72/56	major_frequency=9.922e-01	minor_base=C	minor_cov=1/0	new_cov=72/56	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=73/56
RA	167	.	NC_000913	2144034	0	C	T	bias_e_value=3900310	bias_p_value=0.840284	consensus_score=291.4	fisher_strand_p_value=0.495739	frequency=1	ks_quality_p_value=0.990526	major_base=T	major_cov=39/42	major_frequency=9.759e-01	minor_base=C	minor_cov=0/2	new_cov=39/42	polymorphism_frequency=9.759e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/2	total_cov=39/44
RA	168	.	NC_000913	2149988	0	C	T	bias_e_value=2732970	bias_p_value=0.588792	consensus_score=355.1	fisher_strand_p_value=0.244432	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/51	major_frequency=9.709e-01	minor_base=C	minor_cov=0/3	new_cov=49/51	polymorphism_frequency=9.709e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/3	total_cov=49/54
RA	169	.	NC_000913	2159187	0	G	C	consensus_score=112.8	frequency=1	major_base=C	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	170	.	NC_000913	2165412	0	A	T	consensus_score=272.5	frequency=1	major_base=T	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	171	.	NC_000913	2197779	0	C	T	bias_e_value=3584260	bias_p_value=0.772195	consensus_score=359.7	fisher_strand_p_value=0.40625	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/38	major_frequency=9.896e-01	minor_base=G	minor_cov=0/1	new_cov=57/38	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/39
RA	172	.	NC_000913	2216654	0	C	T	consensus_score=238.8	frequency=1	major_base=T	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	173	.	NC_000913	2260023	0	C	T	consensus_score=282.0	frequency=1	major_base=T	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	174	.	NC_000913	2261163	0	C	T	consensus_score=249.5	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	175	.	NC_000913	2267551	0	G	A	consensus_score=332.7	frequency=1	major_base=A	major_cov=40/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/50
RA	176	.	NC_000913	2288418	0	G	T	bias_e_value=1.39975e-05	bias_p_value=3.01563e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.6	fisher_strand_p_value=9.74044e-14	frequency=2.879e-01	ks_quality_p_value=1	major_base=G	major_cov=61/33	major_frequency=7.121e-01	minor_base=T	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.879e-01	polymorphism_score=20.7	prediction=polymorphism	ref_cov=61/33	total_cov=61/71
RA	177	.	NC_000913	2456751	0	C	A	consensus_score=285.3	frequency=1	major_base=A	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	178	.	NC_000913	2457177	0	T	G	bias_e_value=1997.92	bias_p_value=0.000430432	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.9	fisher_strand_p_value=3.85576e-05	frequency=3.111e-01	ks_quality_p_value=1	major_base=T	major_cov=20/11	major_frequency=6.889e-01	minor_base=G	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.111e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=20/11	total_cov=20/27
RA	179	.	NC_000913	2477265	0	A	C	bias_e_value=0.000540014	bias_p_value=1.16341e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.7	fisher_strand_p_value=4.28088e-12	frequency=3.563e-01	ks_quality_p_value=1	major_base=A	major_cov=16/40	major_frequency=6.437e-01	minor_base=C	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.563e-01	polymorphism_score=34.6	prediction=polymorphism	ref_cov=16/40	total_cov=47/40
RA	180	.	NC_000913	2755936	0	A	C	bias_e_value=2.3273	bias_p_value=5.01395e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.4	fisher_strand_p_value=2.72212e-08	frequency=2.717e-01	ks_quality_p_value=1	major_base=A	major_cov=27/40	major_frequency=7.283e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.717e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=27/40	total_cov=52/40
RA	181	.	NC_000913	2767445	0	C	A	bias_e_value=9.82709e-05	bias_p_value=2.11715e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.8	fisher_strand_p_value=7.31473e-13	frequency=2.745e-01	ks_quality_p_value=1	major_base=C	major_cov=19/55	major_frequency=7.255e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.745e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=19/55	total_cov=47/55
RA	182	.	NC_000913	2861081	0	C	T	consensus_score=434.0	frequency=1	major_base=T	major_cov=76/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/42
RA	183	.	NC_000913	2867455	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=460.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=81/43	major_frequency=9.920e-01	minor_base=A	minor_cov=1/0	new_cov=81/43	polymorphism_frequency=9.920e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/43
RA	184	.	NC_000913	2876239	0	C	A	bias_e_value=54.4538	bias_p_value=1.17316e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.2	fisher_strand_p_value=7.78696e-07	frequency=2.137e-01	ks_quality_p_value=1	major_base=C	major_cov=56/47	major_frequency=7.863e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.137e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=56/47	total_cov=84/47
RA	185	.	NC_000913	2882934	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=583.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=82/78	major_frequency=9.877e-01	minor_base=G	minor_cov=1/1	new_cov=82/78	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=83/81
RA	186	.	NC_000913	2950012	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=407.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=53/64	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=53/64	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=54/65
RA	187	.	NC_000913	2964821	0	A	G	bias_e_value=4530470	bias_p_value=0.976046	consensus_score=274.4	fisher_strand_p_value=0.789262	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/42	major_frequency=8.431e-01	minor_base=A	minor_cov=9/7	new_cov=44/42	polymorphism_frequency=8.431e-01	polymorphism_score=34.7	prediction=consensus	ref_cov=9/7	total_cov=53/49
RA	188	.	NC_000913	2967599	0	A	T	consensus_score=455.5	frequency=1	major_base=T	major_cov=76/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/45
RA	189	.	NC_000913	2990250	0	C	T	consensus_score=592.4	frequency=1	major_base=T	major_cov=65/97	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/97	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/97
RA	190	.	NC_000913	2990480	0	C	A	bias_e_value=0.00447653	bias_p_value=9.64427e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=327.6	fisher_strand_p_value=3.86119e-11	frequency=2.637e-01	ks_quality_p_value=1	major_base=C	major_cov=71/63	major_frequency=7.363e-01	minor_base=A	minor_cov=48/0	new_cov=48/0	polymorphism_frequency=2.637e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=71/63	total_cov=119/63
RA	191	.	NC_000913	3022584	0	C	T	consensus_score=427.4	frequency=1	major_base=T	major_cov=66/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/48
RA	192	.	NC_000913	3023159	0	C	T	consensus_score=476.4	frequency=1	major_base=T	major_cov=63/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/65
RA	193	.	NC_000913	3028355	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=429.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=61/55	major_frequency=9.915e-01	minor_base=G	minor_cov=1/0	new_cov=61/55	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/55
RA	194	.	NC_000913	3031244	0	C	T	consensus_score=531.9	frequency=1	major_base=T	major_cov=49/99	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/99	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/99
RA	195	.	NC_000913	3038813	0	C	T	bias_e_value=3816980	bias_p_value=0.822332	consensus_score=413.0	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=64/55	major_frequency=9.917e-01	minor_base=G	minor_cov=0/1	new_cov=64/55	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/56
RA	196	.	NC_000913	3051427	0	C	T	consensus_score=425.5	frequency=1	major_base=T	major_cov=73/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/39
RA	197	.	NC_000913	3054886	0	G	T	bias_e_value=5.31419e-07	bias_p_value=1.14489e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.6	fisher_strand_p_value=3.33453e-15	frequency=3.113e-01	ks_quality_p_value=1	major_base=G	major_cov=17/56	major_frequency=6.887e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.113e-01	polymorphism_score=30.6	prediction=polymorphism	ref_cov=17/56	total_cov=50/56
RA	198	.	NC_000913	3054894	0	G	T	bias_e_value=0.07054	bias_p_value=1.51972e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.7	fisher_strand_p_value=6.87728e-10	frequency=3.431e-01	ks_quality_p_value=1	major_base=G	major_cov=15/52	major_frequency=6.569e-01	minor_base=T	minor_cov=30/5	new_cov=30/5	polymorphism_frequency=3.431e-01	polymorphism_score=34.5	prediction=polymorphism	ref_cov=15/52	total_cov=45/57
RA	199	.	NC_000913	3055383	0	C	T	consensus_score=379.3	frequency=1	major_base=T	major_cov=48/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/61
RA	200	.	NC_000913	3061803	0	C	T	bias_e_value=4640240	bias_p_value=0.999695	consensus_score=418.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.975403	major_base=T	major_cov=57/59	major_frequency=9.915e-01	minor_base=.	minor_cov=0/1	new_cov=57/59	polymorphism_frequency=9.915e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/0	total_cov=57/60
RA	201	.	NC_000913	3092276	0	C	T	bias_e_value=3783940	bias_p_value=0.815214	consensus_score=336.9	fisher_strand_p_value=0.457447	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/42	major_frequency=9.894e-01	minor_base=G	minor_cov=0/1	new_cov=51/42	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	202	.	NC_000913	3111071	0	C	T	consensus_score=436.1	frequency=1	major_base=T	major_cov=72/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/45
RA	203	.	NC_000913	3115105	0	G	T	bias_e_value=0.0197872	bias_p_value=4.26296e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.8	fisher_strand_p_value=1.81966e-10	frequency=2.667e-01	ks_quality_p_value=1	major_base=G	major_cov=47/19	major_frequency=7.333e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.667e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=47/19	total_cov=47/43
RA	204	.	NC_000913	3116060	0	C	T	consensus_score=483.8	frequency=1	major_base=T	major_cov=57/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/75
RA	205	.	NC_000913	3125729	0	C	T	consensus_score=320.5	frequency=1	major_base=T	major_cov=50/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/38
RA	206	.	NC_000913	3137964	0	C	T	consensus_score=478.6	frequency=1	major_base=T	major_cov=72/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/59
RA	207	.	NC_000913	3142761	0	C	T	consensus_score=407.8	frequency=1	major_base=T	major_cov=58/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/54
RA	208	.	NC_000913	3148786	0	C	T	bias_e_value=3585320	bias_p_value=0.772423	consensus_score=443.9	fisher_strand_p_value=0.406504	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/73	major_frequency=9.919e-01	minor_base=G	minor_cov=1/0	new_cov=49/73	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/73
RA	209	.	NC_000913	3176283	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=341.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/55	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=41/55	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/56
RA	210	.	NC_000913	3195554	0	C	T	consensus_score=385.1	frequency=1	major_base=T	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	211	.	NC_000913	3200748	0	C	T	bias_e_value=3684290	bias_p_value=0.793746	consensus_score=459.9	fisher_strand_p_value=0.438462	frequency=1	ks_quality_p_value=0.982973	major_base=T	major_cov=73/56	major_frequency=9.923e-01	minor_base=G	minor_cov=0/1	new_cov=73/56	polymorphism_frequency=9.923e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=73/57
RA	212	.	NC_000913	3215594	0	C	T	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=392.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997429	major_base=T	major_cov=51/60	major_frequency=9.911e-01	minor_base=C	minor_cov=0/1	new_cov=51/60	polymorphism_frequency=9.911e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=51/61
RA	213	.	NC_000913	3215671	0	C	T	bias_e_value=3810760	bias_p_value=0.820992	consensus_score=405.9	fisher_strand_p_value=0.464912	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/61	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=52/61	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/61
RA	214	.	NC_000913	3239705	0	C	T	consensus_score=466.6	frequency=1	major_base=T	major_cov=79/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/48
RA	215	.	NC_000913	3248851	0	C	T	bias_e_value=3781430	bias_p_value=0.814673	consensus_score=505.2	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=0.984882	major_base=T	major_cov=74/63	major_frequency=9.928e-01	minor_base=.	minor_cov=0/1	new_cov=74/63	polymorphism_frequency=9.928e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=0/0	total_cov=74/64
RA	216	.	NC_000913	3268718	0	G	A	consensus_score=582.4	frequency=1	major_base=A	major_cov=83/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/78
RA	217	.	NC_000913	3308639	0	G	A	consensus_score=438.8	frequency=1	major_base=A	major_cov=62/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/58
RA	218	.	NC_000913	3317041	0	G	A	consensus_score=379.5	frequency=1	major_base=A	major_cov=63/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/44
RA	219	.	NC_000913	3354491	0	T	G	bias_e_value=4640950	bias_p_value=0.999848	consensus_score=462.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.982624	major_base=G	major_cov=51/66	major_frequency=9.915e-01	minor_base=T	minor_cov=0/1	new_cov=51/66	polymorphism_frequency=9.915e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=51/67
RA	220	.	NC_000913	3401345	0	G	T	bias_e_value=0.762423	bias_p_value=1.64257e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.9	fisher_strand_p_value=8.38163e-09	frequency=2.518e-01	ks_quality_p_value=1	major_base=G	major_cov=50/54	major_frequency=7.482e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.518e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=50/54	total_cov=50/89
RA	221	.	NC_000913	3474425	0	T	G	bias_e_value=1113340	bias_p_value=0.239858	consensus_score=431.0	fisher_strand_p_value=0.0639746	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=69/44	major_frequency=9.741e-01	minor_base=T	minor_cov=0/3	new_cov=69/44	polymorphism_frequency=9.741e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=69/47
RA	222	.	NC_000913	3533224	0	G	C	bias_e_value=2579420	bias_p_value=0.555713	consensus_score=328.4	fisher_strand_p_value=0.221725	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=43/50	major_frequency=9.789e-01	minor_base=A	minor_cov=2/0	new_cov=43/50	polymorphism_frequency=9.789e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	223	.	NC_000913	3549226	0	C	T	bias_e_value=3735020	bias_p_value=0.804675	consensus_score=445.6	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.999492	major_base=T	major_cov=70/55	major_frequency=9.921e-01	minor_base=G	minor_cov=0/1	new_cov=70/55	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/56
RA	224	.	NC_000913	3560455	1	.	G	consensus_score=511.2	frequency=1	major_base=G	major_cov=69/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/59
RA	225	.	NC_000913	3602698	0	G	A	bias_e_value=22.9458	bias_p_value=4.94346e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.7	fisher_strand_p_value=3.09172e-07	frequency=2.683e-01	ks_quality_p_value=1	major_base=G	major_cov=36/24	major_frequency=7.317e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.683e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=36/24	total_cov=36/46
RA	226	.	NC_000913	3602705	0	T	G	bias_e_value=293.75	bias_p_value=6.32858e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.3	fisher_strand_p_value=4.77556e-06	frequency=2.169e-01	ks_quality_p_value=1	major_base=T	major_cov=37/28	major_frequency=7.831e-01	minor_base=G	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.169e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=37/28	total_cov=37/46
RA	227	.	NC_000913	3602706	0	C	A	bias_e_value=278.674	bias_p_value=6.00378e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.9	fisher_strand_p_value=1.36514e-05	frequency=3.415e-01	ks_quality_p_value=0.330449	major_base=C	major_cov=33/21	major_frequency=6.585e-01	minor_base=A	minor_cov=3/25	new_cov=3/25	polymorphism_frequency=3.415e-01	polymorphism_score=63.1	prediction=polymorphism	ref_cov=33/21	total_cov=36/46
RA	228	.	NC_000913	3741871	0	G	T	bias_e_value=1.01699e-05	bias_p_value=2.19101e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=281.7	fisher_strand_p_value=7.00229e-14	frequency=2.927e-01	ks_quality_p_value=1	major_base=G	major_cov=65/51	major_frequency=7.073e-01	minor_base=T	minor_cov=0/48	new_cov=0/48	polymorphism_frequency=2.927e-01	polymorphism_score=40.1	prediction=polymorphism	ref_cov=65/51	total_cov=65/99
RA	229	.	NC_000913	3841663	0	G	A	bias_e_value=309.904	bias_p_value=6.67659e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.2	fisher_strand_p_value=5.06029e-06	frequency=2.222e-01	ks_quality_p_value=1	major_base=G	major_cov=44/33	major_frequency=7.778e-01	minor_base=A	minor_cov=1/21	new_cov=1/21	polymorphism_frequency=2.222e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=44/33	total_cov=45/54
RA	230	.	NC_000913	3843750	0	C	A	bias_e_value=0.0126407	bias_p_value=2.72333e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=370.3	fisher_strand_p_value=1.1397e-10	frequency=2.476e-01	ks_quality_p_value=1	major_base=C	major_cov=89/66	major_frequency=7.524e-01	minor_base=A	minor_cov=51/0	new_cov=51/0	polymorphism_frequency=2.476e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=89/66	total_cov=140/66
RA	231	.	NC_000913	3911533	0	C	A	bias_e_value=1.45705e-11	bias_p_value=3.13908e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=320.9	fisher_strand_p_value=6.95845e-20	frequency=3.195e-01	ks_quality_p_value=1	major_base=C	major_cov=37/78	major_frequency=6.805e-01	minor_base=A	minor_cov=54/0	new_cov=54/0	polymorphism_frequency=3.195e-01	polymorphism_score=28.8	prediction=polymorphism	ref_cov=37/78	total_cov=91/78
RA	232	.	NC_000913	3942092	0	C	T	consensus_score=222.6	frequency=1	major_base=T	major_cov=34/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/58
RA	233	.	NC_000913	4038529	0	G	A	consensus_score=146.4	frequency=1	major_base=A	major_cov=17/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/35
RA	234	.	NC_000913	4103889	0	G	A	consensus_score=385.9	frequency=1	major_base=A	major_cov=45/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/54
RA	235	.	NC_000913	4111737	0	A	C	bias_e_value=33.8616	bias_p_value=7.29516e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.7	fisher_strand_p_value=4.68422e-07	frequency=2.523e-01	ks_quality_p_value=1	major_base=A	major_cov=41/39	major_frequency=7.477e-01	minor_base=C	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.523e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=41/39	total_cov=69/39
RA	236	.	NC_000913	4115937	0	G	A	consensus_score=380.4	frequency=1	major_base=A	major_cov=46/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/57
RA	237	.	NC_000913	4136467	0	A	C	bias_e_value=4.48276	bias_p_value=9.65767e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.3	fisher_strand_p_value=5.44851e-08	frequency=2.927e-01	ks_quality_p_value=1	major_base=A	major_cov=23/35	major_frequency=7.073e-01	minor_base=C	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.927e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=23/35	total_cov=48/36
RA	238	.	NC_000913	4183786	0	G	A	consensus_score=418.5	frequency=1	major_base=A	major_cov=73/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/44
RA	239	.	NC_000913	4213310	0	G	T	bias_e_value=2.15712e-07	bias_p_value=4.6473e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.4	fisher_strand_p_value=1.31791e-15	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=71/39	major_frequency=7.143e-01	minor_base=T	minor_cov=0/44	new_cov=0/44	polymorphism_frequency=2.857e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=71/39	total_cov=72/83
RA	240	.	NC_000913	4296380	1	.	C	bias_e_value=4637370	bias_p_value=0.999077	consensus_score=268.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.957333	major_base=C	major_cov=48/26	major_frequency=9.867e-01	minor_base=.	minor_cov=1/0	new_cov=48/26	polymorphism_frequency=9.867e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/0	total_cov=49/26
RA	241	.	NC_000913	4296380	2	.	G	bias_e_value=4633390	bias_p_value=0.998219	consensus_score=266.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.940916	major_base=G	major_cov=48/26	major_frequency=9.867e-01	minor_base=.	minor_cov=1/0	new_cov=48/26	polymorphism_frequency=9.867e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/0	total_cov=49/26
RA	242	.	NC_000913	4360965	0	C	A	bias_e_value=1.1527e-13	bias_p_value=2.48338e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=449.3	fisher_strand_p_value=4.96129e-22	frequency=2.689e-01	ks_quality_p_value=1	major_base=C	major_cov=50/105	major_frequency=7.311e-01	minor_base=A	minor_cov=57/0	new_cov=57/0	polymorphism_frequency=2.689e-01	polymorphism_score=35.6	prediction=polymorphism	ref_cov=50/105	total_cov=107/105
RA	243	.	NC_000913	4376252	0	C	A	bias_e_value=2.38594	bias_p_value=5.14028e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=315.2	fisher_strand_p_value=2.7947e-08	frequency=2.063e-01	ks_quality_p_value=1	major_base=C	major_cov=68/59	major_frequency=7.937e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.063e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=68/59	total_cov=101/59
RA	244	.	NC_000913	4406302	0	C	A	bias_e_value=0.000350873	bias_p_value=7.55924e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=339.8	fisher_strand_p_value=2.73644e-12	frequency=2.516e-01	ks_quality_p_value=1	major_base=C	major_cov=51/68	major_frequency=7.484e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.516e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=51/68	total_cov=91/68
RA	245	.	NC_000913	4467310	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=466.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=66/62	major_frequency=9.922e-01	minor_base=C	minor_cov=1/0	new_cov=66/62	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/62
RA	246	.	NC_000913	4468660	0	G	A	consensus_score=438.7	frequency=1	major_base=A	major_cov=62/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/59
RA	247	.	NC_000913	4471869	0	G	A	bias_e_value=3614120	bias_p_value=0.778627	consensus_score=367.8	fisher_strand_p_value=0.413462	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/61	major_frequency=9.904e-01	minor_base=C	minor_cov=1/0	new_cov=42/61	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/61
RA	248	.	NC_000913	4479787	0	A	G	consensus_score=714.7	frequency=1	major_base=G	major_cov=94/92	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=94/92	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=94/92
RA	249	.	NC_000913	4492454	0	G	A	consensus_score=470.8	frequency=1	major_base=A	major_cov=83/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/49
RA	250	.	NC_000913	4500990	0	G	A	bias_e_value=1991840	bias_p_value=0.429124	consensus_score=554.8	fisher_strand_p_value=0.147145	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=57/94	major_frequency=9.869e-01	minor_base=G	minor_cov=2/0	new_cov=57/94	polymorphism_frequency=9.869e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=59/94
RA	251	.	NC_000913	4507161	0	G	A	consensus_score=538.6	frequency=1	major_base=A	major_cov=77/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/71
RA	252	.	NC_000913	4509571	0	C	T	consensus_score=454.7	frequency=1	major_base=T	major_cov=73/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/48
RA	253	.	NC_000913	4518426	0	G	A	consensus_score=522.2	frequency=1	major_base=A	major_cov=67/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/78
RA	254	.	NC_000913	4520172	0	G	A	bias_e_value=3821990	bias_p_value=0.823411	consensus_score=516.3	fisher_strand_p_value=0.468085	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=65/75	major_frequency=9.929e-01	minor_base=C	minor_cov=1/0	new_cov=65/75	polymorphism_frequency=9.929e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=67/75
RA	255	.	NC_000913	4522864	0	G	A	bias_e_value=2490790	bias_p_value=0.536617	consensus_score=443.5	fisher_strand_p_value=0.209284	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=55/67	major_frequency=9.839e-01	minor_base=C	minor_cov=2/0	new_cov=55/67	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/67
RA	256	.	NC_000913	4531353	0	G	A	consensus_score=469.2	frequency=1	major_base=A	major_cov=77/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/50
RA	257	.	NC_000913	4532864	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=314.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/39	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=49/39	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	258	.	NC_000913	4540411	0	C	A	bias_e_value=1.15779e-08	bias_p_value=2.49435e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=497.5	fisher_strand_p_value=6.51786e-17	frequency=2.258e-01	ks_quality_p_value=1	major_base=C	major_cov=66/102	major_frequency=7.742e-01	minor_base=A	minor_cov=49/0	new_cov=49/0	polymorphism_frequency=2.258e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=66/102	total_cov=115/103
RA	259	.	NC_000913	4543654	0	G	A	consensus_score=377.3	frequency=1	major_base=A	major_cov=71/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/38
RA	260	.	NC_000913	4551644	0	G	A	consensus_score=469.6	frequency=1	major_base=A	major_cov=47/81	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/81	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/81
RA	261	.	NC_000913	4556867	0	G	A	bias_e_value=3517170	bias_p_value=0.757741	consensus_score=591.9	fisher_strand_p_value=0.391304	frequency=1	ks_quality_p_value=0.998061	major_base=A	major_cov=62/98	major_frequency=9.938e-01	minor_base=C	minor_cov=1/0	new_cov=62/98	polymorphism_frequency=9.938e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/98
RA	262	.	NC_000913	4562404	0	G	A	consensus_score=364.5	frequency=1	major_base=A	major_cov=52/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	263	.	NC_000913	4570961	0	G	A	consensus_score=261.7	frequency=1	major_base=A	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	264	.	NC_000913	4583948	0	G	A	consensus_score=355.9	frequency=1	major_base=A	major_cov=50/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/52
RA	265	.	NC_000913	4590986	0	G	A	consensus_score=272.0	frequency=1	major_base=A	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	266	.	NC_000913	4600647	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=1026.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=135/144	major_frequency=9.964e-01	minor_base=G	minor_cov=0/1	new_cov=135/144	polymorphism_frequency=9.964e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=135/145
RA	267	.	NC_000913	4610488	0	G	A	bias_e_value=1821590	bias_p_value=0.392445	consensus_score=747.8	fisher_strand_p_value=0.128639	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=74/135	major_frequency=9.905e-01	minor_base=C	minor_cov=2/0	new_cov=74/135	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=76/137
RA	268	.	NC_000913	4625303	0	G	A	consensus_score=657.8	frequency=1	major_base=A	major_cov=109/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=109/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=109/74
RA	269	.	NC_000913	4626064	0	C	A	bias_e_value=7.46646e-05	bias_p_value=1.60858e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=365.2	fisher_strand_p_value=5.50351e-13	frequency=2.514e-01	ks_quality_p_value=1	major_base=C	major_cov=64/73	major_frequency=7.486e-01	minor_base=A	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=2.514e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=64/73	total_cov=110/73
RA	270	.	NC_000913	4630742	0	G	A	consensus_score=819.6	frequency=1	major_base=A	major_cov=94/131	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=94/131	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=94/131
RA	271	.	NC_000913	4631251	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=649.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=91/92	major_frequency=9.946e-01	minor_base=C	minor_cov=1/0	new_cov=91/92	polymorphism_frequency=9.946e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=92/93
RA	272	.	NC_000913	4632689	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=961.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=124/137	major_frequency=9.962e-01	minor_base=G	minor_cov=0/1	new_cov=124/137	polymorphism_frequency=9.962e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=124/138
RA	273	.	NC_000913	4637813	0	G	A	bias_e_value=1822330	bias_p_value=0.392604	consensus_score=730.5	fisher_strand_p_value=0.128716	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=69/126	major_frequency=9.898e-01	minor_base=C	minor_cov=2/0	new_cov=69/126	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/126
MC	274	.	NC_000913	257908	258683	768	0	left_inside_cov=1	left_outside_cov=113	right_inside_cov=2	right_outside_cov=114
MC	275	.	NC_000913	574454	575597	0	1011	left_inside_cov=0	left_outside_cov=116	right_inside_cov=25	right_outside_cov=26
MC	276	.	NC_000913	1978503	1979278	766	0	left_inside_cov=0	left_outside_cov=130	right_inside_cov=5	right_outside_cov=133
MC	277	.	NC_000913	2170365	2177975	1062	0	left_inside_cov=23	left_outside_cov=26	right_inside_cov=0	right_outside_cov=88
MC	278	.	NC_000913	3423909	3424444	324	206	left_inside_cov=24	left_outside_cov=28	right_inside_cov=25	right_outside_cov=26
MC	279	.	NC_000913	3515198	3515801	0	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=25	right_outside_cov=26
MC	280	.	NC_000913	3582125	3583959	0	530	left_inside_cov=0	left_outside_cov=171	right_inside_cov=25	right_outside_cov=26
JC	281	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=153	coverage_plus=132	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=299	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=297	max_left_minus=297	max_left_plus=291	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=148	max_min_right_minus=148	max_min_right_plus=148	max_pos_hash_score=598	max_right=290	max_right_minus=290	max_right_plus=289	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=2.71	new_junction_read_count=290	polymorphism_frequency=1.000e+00	pos_hash_score=135	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=285
JC	282	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=40	coverage_plus=71	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=291	max_left_minus=291	max_left_plus=282	max_min_left=145	max_min_left_minus=145	max_min_left_plus=138	max_min_right=145	max_min_right_minus=141	max_min_right_plus=145	max_pos_hash_score=582	max_right=289	max_right_minus=289	max_right_plus=280	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.07	new_junction_read_count=112	polymorphism_frequency=9.957e-01	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=111
JC	283	.	NC_000913	574453	-1	NC_000913	2101749	1	0	alignment_overlap=3	coverage_minus=72	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=296	key=NC_000913__574453__-1__NC_000913__2101746__1__3____300__300__0__1	max_left=295	max_left_minus=292	max_left_plus=295	max_min_left=148	max_min_left_minus=148	max_min_left_plus=145	max_min_right=145	max_min_right_minus=145	max_min_right_plus=138	max_pos_hash_score=592	max_right=295	max_right_minus=295	max_right_plus=294	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=117	polymorphism_frequency=1.000e+00	pos_hash_score=77	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=115
JC	284	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=28	coverage_plus=25	flanking_left=300	flanking_right=300	frequency=6.834e-01	junction_possible_overlap_registers=283	key=NC_000913__1207790__1__NC_000913__1209603__1__16____300__300__0__0	max_left=279	max_left_minus=279	max_left_plus=244	max_min_left=139	max_min_left_minus=139	max_min_left_plus=138	max_min_right=142	max_min_right_minus=139	max_min_right_plus=142	max_pos_hash_score=566	max_right=279	max_right_minus=271	max_right_plus=279	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.53	new_junction_read_count=54	polymorphism_frequency=6.834e-01	pos_hash_score=41	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.17	side_1_overlap=16	side_1_possible_overlap_registers=299	side_1_read_count=18	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.33	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=53
JC	285	.	NC_000913	1207798	-1	NC_000913	1209608	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.254e-01	junction_possible_overlap_registers=298	key=NC_000913__1207798__-1__NC_000913__1209608__-1__-1__T__300__300__0__0	max_left=285	max_left_minus=0	max_left_plus=285	max_min_left=120	max_min_left_minus=0	max_min_left_plus=120	max_min_right=84	max_min_right_minus=0	max_min_right_plus=84	max_pos_hash_score=596	max_right=231	max_right_minus=0	max_right_plus=231	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=1.254e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=19	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.35	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=T
JC	286	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=21	coverage_plus=27	flanking_left=300	flanking_right=300	frequency=6.536e-01	junction_possible_overlap_registers=283	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____300__300__0__0	max_left=283	max_left_minus=215	max_left_plus=283	max_min_left=120	max_min_left_minus=120	max_min_left_plus=107	max_min_right=142	max_min_right_minus=142	max_min_right_plus=112	max_pos_hash_score=566	max_right=274	max_right_minus=262	max_right_plus=274	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.48	new_junction_read_count=49	polymorphism_frequency=6.536e-01	pos_hash_score=40	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=16	side_1_possible_overlap_registers=299	side_1_read_count=20	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.33	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=48
JC	287	.	NC_000913	1230017	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=33	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1230017__1__NC_000913__1469240__-1__0____300__300__0__1	max_left=295	max_left_minus=280	max_left_plus=295	max_min_left=142	max_min_left_minus=142	max_min_left_plus=142	max_min_right=148	max_min_right_minus=148	max_min_right_plus=137	max_pos_hash_score=598	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.74	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=77
JC	288	.	NC_000913	1230021	-1	NC_000913	1467910	1	0	alignment_overlap=2	coverage_minus=29	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=297	key=NC_000913__1230023__-1__NC_000913__1467910__1__2____300__300__0__1	max_left=296	max_left_minus=292	max_left_plus=296	max_min_left=140	max_min_left_minus=140	max_min_left_plus=140	max_min_right=147	max_min_right_minus=146	max_min_right_plus=147	max_pos_hash_score=594	max_right=285	max_right_minus=285	max_right_plus=275	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.85	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=86
JC	289	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.252e-01	junction_possible_overlap_registers=279	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=175	max_left_minus=163	max_left_plus=175	max_min_left=112	max_min_left_minus=49	max_min_left_plus=112	max_min_right=122	max_min_right_minus=122	max_min_right_plus=105	max_pos_hash_score=558	max_right=231	max_right_minus=231	max_right_plus=148	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=1.252e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.44	side_1_overlap=20	side_1_possible_overlap_registers=299	side_1_read_count=47	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.40	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=5
JC	290	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=55	coverage_plus=61	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=291	max_left_plus=294	max_min_left=120	max_min_left_minus=120	max_min_left_plus=111	max_min_right=142	max_min_right_minus=117	max_min_right_plus=142	max_pos_hash_score=590	max_right=293	max_right_minus=293	max_right_plus=287	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.12	new_junction_read_count=118	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=116
JC	291	.	NC_000913	1467910	1	NC_000913	1668266	-1	0	alignment_overlap=0	coverage_minus=56	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1467910__1__NC_000913__1668266__-1__0____300__300__1__0	max_left=297	max_left_minus=284	max_left_plus=297	max_min_left=142	max_min_left_minus=141	max_min_left_plus=142	max_min_right=148	max_min_right_minus=141	max_min_right_plus=148	max_pos_hash_score=598	max_right=294	max_right_minus=294	max_right_plus=293	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.09	new_junction_read_count=117	polymorphism_frequency=1.000e+00	pos_hash_score=77	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=113
JC	292	.	NC_000913	1469240	-1	NC_000913	1668262	1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1469240__-1__NC_000913__1668262__1__0____300__300__1__0	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=145	max_min_left_minus=145	max_min_left_plus=104	max_min_right=137	max_min_right_minus=137	max_min_right_plus=137	max_pos_hash_score=598	max_right=295	max_right_minus=295	max_right_plus=283	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.84	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=89
JC	293	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=76	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=290	max_left_minus=290	max_left_plus=284	max_min_left=145	max_min_left_minus=134	max_min_left_plus=145	max_min_right=131	max_min_right_minus=131	max_min_right_plus=130	max_pos_hash_score=582	max_right=291	max_right_minus=291	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=128	polymorphism_frequency=1.000e+00	pos_hash_score=84	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=127
JC	294	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=53	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____300__300__1__0	max_left=288	max_left_minus=288	max_left_plus=253	max_min_left=148	max_min_left_minus=143	max_min_left_plus=148	max_min_right=139	max_min_right_minus=139	max_min_right_plus=138	max_pos_hash_score=596	max_right=297	max_right_minus=293	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.94	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	295	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=47	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=282	max_min_left=149	max_min_left_minus=148	max_min_left_plus=149	max_min_right=149	max_min_right_minus=148	max_min_right_plus=149	max_pos_hash_score=598	max_right=297	max_right_minus=271	max_right_plus=297	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=95
JC	296	.	NC_000913	2171428	-1	NC_000913	2177976	1	0	alignment_overlap=2	coverage_minus=44	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=297	key=NC_000913__2171428__-1__NC_000913__2177974__1__2____300__300__1__0	max_left=296	max_left_minus=296	max_left_plus=290	max_min_left=142	max_min_left_minus=142	max_min_left_plus=138	max_min_right=145	max_min_right_minus=140	max_min_right_plus=145	max_pos_hash_score=594	max_right=284	max_right_minus=284	max_right_plus=277	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.83	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=297	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	297	.	NC_000913	2357664	-1	NC_000913	2357848	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.385e-02	junction_possible_overlap_registers=288	key=NC_000913__2357664__-1__NC_000913__2357837__1__11____300__300__0__0	max_left=170	max_left_minus=170	max_left_plus=140	max_min_left=140	max_min_left_minus=127	max_min_left_plus=140	max_min_right=119	max_min_right_minus=119	max_min_right_plus=0	max_pos_hash_score=576	max_right=240	max_right_minus=172	max_right_plus=240	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=5.385e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=11	side_1_possible_overlap_registers=299	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=5
JC	298	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.616e-02	junction_possible_overlap_registers=274	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=181	max_left_minus=181	max_left_plus=85	max_min_left=104	max_min_left_minus=104	max_min_left_plus=85	max_min_right=128	max_min_right_minus=128	max_min_right_plus=0	max_pos_hash_score=548	max_right=259	max_right_minus=176	max_right_plus=259	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=9.616e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=25	side_1_possible_overlap_registers=299	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=7
JC	299	.	NC_000913	2878126	-1	NC_000913	2878374	1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.160e-02	junction_possible_overlap_registers=295	key=NC_000913__2878126__-1__NC_000913__2878370__1__4____300__300__0__0	max_left=97	max_left_minus=97	max_left_plus=69	max_min_left=97	max_min_left_minus=97	max_min_left_plus=69	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=295	max_right_minus=199	max_right_plus=295	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.160e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=4	side_1_possible_overlap_registers=299	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=3
JC	300	.	NC_000913	2904102	-1	NC_000913	2904408	1	0	alignment_overlap=30	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.402e-02	junction_possible_overlap_registers=269	key=NC_000913__2904102__-1__NC_000913__2904378__1__30____300__300__0__0	max_left=166	max_left_minus=166	max_left_plus=113	max_min_left=113	max_min_left_minus=22	max_min_left_plus=113	max_min_right=104	max_min_right_minus=104	max_min_right_plus=0	max_pos_hash_score=538	max_right=232	max_right_minus=232	max_right_plus=232	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.402e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=30	side_1_possible_overlap_registers=299	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=4
JC	301	.	NC_000913	3582124	-1	NC_000913	3583428	1	0	alignment_overlap=0	coverage_minus=63	coverage_plus=105	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__3582124__-1__NC_000913__3583428__1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=298	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=148	max_min_right_minus=138	max_min_right_plus=148	max_pos_hash_score=598	max_right=296	max_right_minus=296	max_right_plus=291	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.60	new_junction_read_count=171	polymorphism_frequency=1.000e+00	pos_hash_score=104	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=168
JC	302	.	NC_000913	3583428	1	NC_000913	4599508	1	0	alignment_overlap=0	coverage_minus=103	coverage_plus=83	flanking_left=300	flanking_right=300	frequency=5.877e-01	junction_possible_overlap_registers=299	key=NC_000913__3583428__1__NC_000913__4599508__1__0____300__300__1__0	max_left=296	max_left_minus=284	max_left_plus=296	max_min_left=149	max_min_left_minus=149	max_min_left_plus=149	max_min_right=150	max_min_right_minus=150	max_min_right_plus=148	max_pos_hash_score=598	max_right=297	max_right_minus=295	max_right_plus=297	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.78	new_junction_read_count=191	polymorphism_frequency=5.877e-01	pos_hash_score=106	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=186
JC	303	.	NC_000913	3648146	-1	NC_000913	3648378	1	0	alignment_overlap=58	coverage_minus=5	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=8.589e-02	junction_possible_overlap_registers=241	key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0	max_left=233	max_left_minus=212	max_left_plus=233	max_min_left=92	max_min_left_minus=92	max_min_left_plus=67	max_min_right=85	max_min_right_minus=45	max_min_right_plus=85	max_pos_hash_score=482	max_right=230	max_right_minus=172	max_right_plus=230	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.15	new_junction_read_count=13	polymorphism_frequency=8.589e-02	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.74	side_1_overlap=58	side_1_possible_overlap_registers=299	side_1_read_count=187	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.46	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=12
JC	304	.	NC_000913	3948343	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=56	coverage_plus=77	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__3948342__1__NC_000913__4498181__1__1____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=295	max_min_left=149	max_min_left_minus=149	max_min_left_plus=137	max_min_right=146	max_min_right_minus=133	max_min_right_plus=146	max_pos_hash_score=596	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=136	polymorphism_frequency=1.000e+00	pos_hash_score=89	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=133
JC	305	.	NC_000913	3948347	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=46	coverage_plus=78	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__3948347__-1__NC_000913__4499511__-1__0____300__300__0__1	max_left=296	max_left_minus=286	max_left_plus=296	max_min_left=149	max_min_left_minus=149	max_min_left_plus=141	max_min_right=149	max_min_right_minus=145	max_min_right_plus=149	max_pos_hash_score=598	max_right=293	max_right_minus=289	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=130	polymorphism_frequency=1.000e+00	pos_hash_score=84	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=124
JC	306	.	NC_000913	4295870	-1	NC_000913	4296434	1	0	alignment_overlap=39	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.855e-02	junction_possible_overlap_registers=260	key=NC_000913__4295870__-1__NC_000913__4296395__1__39____300__300__0__0	max_left=89	max_left_minus=88	max_left_plus=89	max_min_left=89	max_min_left_minus=88	max_min_left_plus=89	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=520	max_right=195	max_right_minus=183	max_right_plus=195	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.855e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=39	side_1_possible_overlap_registers=299	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=260	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=4
JC	307	.	NC_000913	4392437	-1	NC_000913	4392661	1	0	alignment_overlap=78	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.343e-02	junction_possible_overlap_registers=221	key=NC_000913__4392437__-1__NC_000913__4392583__1__78____300__300__0__0	max_left=164	max_left_minus=164	max_left_plus=126	max_min_left=86	max_min_left_minus=86	max_min_left_plus=69	max_min_right=96	max_min_right_minus=53	max_min_right_plus=96	max_pos_hash_score=442	max_right=211	max_right_minus=136	max_right_plus=211	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.343e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=78	side_1_possible_overlap_registers=299	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=221	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=5
JC	308	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=7	coverage_plus=18	flanking_left=300	flanking_right=300	frequency=1.394e-01	junction_possible_overlap_registers=290	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=267	max_min_left=136	max_min_left_minus=136	max_min_left_plus=122	max_min_right=141	max_min_right_minus=141	max_min_right_plus=73	max_pos_hash_score=580	max_right=290	max_right_minus=155	max_right_plus=290	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.24	new_junction_read_count=25	polymorphism_frequency=1.394e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.63	side_1_overlap=9	side_1_possible_overlap_registers=299	side_1_read_count=175	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.34	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=139	side_2_redundant=0	total_non_overlap_reads=25
JC	309	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=16	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=9.647e-02	junction_possible_overlap_registers=290	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=275	max_left_minus=275	max_left_plus=273	max_min_left=125	max_min_left_minus=125	max_min_left_plus=0	max_min_right=142	max_min_right_minus=142	max_min_right_plus=18	max_pos_hash_score=580	max_right=288	max_right_minus=288	max_right_plus=18	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.16	new_junction_read_count=17	polymorphism_frequency=9.647e-02	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.73	side_1_overlap=9	side_1_possible_overlap_registers=299	side_1_read_count=185	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.34	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=139	side_2_redundant=0	total_non_overlap_reads=17
JC	310	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=4.622e-02	junction_possible_overlap_registers=210	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=177	max_left_minus=159	max_left_plus=177	max_min_left=75	max_min_left_minus=75	max_min_left_plus=18	max_min_right=83	max_min_right_minus=75	max_min_right_plus=83	max_pos_hash_score=420	max_right=193	max_right_minus=141	max_right_plus=193	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.11	new_junction_read_count=8	polymorphism_frequency=4.622e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.22	side_1_overlap=89	side_1_possible_overlap_registers=299	side_1_read_count=238	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.16	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=163	side_2_redundant=0	total_non_overlap_reads=8
JC	311	.	NC_000913	4617536	1	NC_000913	4617542	-1	-12	alignment_overlap=-12	coverage_minus=1	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.575e-01	junction_possible_overlap_registers=287	key=NC_000913__4617536__1__NC_000913__4617542__-1__-12__GTGGGAAGTTGT__300__300__0__0	max_left=166	max_left_minus=166	max_left_plus=158	max_min_left=107	max_min_left_minus=0	max_min_left_plus=107	max_min_right=130	max_min_right_minus=122	max_min_right_plus=130	max_pos_hash_score=574	max_right=285	max_right_minus=122	max_right_plus=285	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=1.575e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.35	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.37	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=GTGGGAAGTTGT
JC	312	.	NC_000913	4617536	1	NC_000913	4617554	-1	0	alignment_overlap=8	coverage_minus=128	coverage_plus=108	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__4617536__1__NC_000913__4617562__-1__8____300__300__0__0	max_left=291	max_left_minus=291	max_left_plus=283	max_min_left=145	max_min_left_minus=145	max_min_left_plus=144	max_min_right=142	max_min_right_minus=142	max_min_right_plus=142	max_pos_hash_score=582	max_right=291	max_right_minus=291	max_right_plus=290	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=2.31	new_junction_read_count=241	polymorphism_frequency=8.734e-01	pos_hash_score=116	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.40	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.27	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=236
JC	313	.	NC_000913	4617553	1	NC_000913	4617562	-1	-9	alignment_overlap=-9	coverage_minus=0	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.096e-01	junction_possible_overlap_registers=290	key=NC_000913__4617553__1__NC_000913__4617562__-1__-9__TGGAAGTTG__300__300__0__0	max_left=202	max_left_minus=0	max_left_plus=202	max_min_left=116	max_min_left_minus=0	max_min_left_plus=116	max_min_right=89	max_min_right_minus=0	max_min_right_plus=89	max_pos_hash_score=580	max_right=186	max_right_minus=0	max_right_plus=186	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=1.096e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.35	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.28	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=TGGAAGTTG
JC	314	.	NC_000913	4617557	1	NC_000913	4617562	-1	-13	alignment_overlap=-13	coverage_minus=0	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.463e-01	junction_possible_overlap_registers=286	key=NC_000913__4617557__1__NC_000913__4617562__-1__-13__ATGTGGGAAGTTG__300__300__0__0	max_left=198	max_left_minus=0	max_left_plus=198	max_min_left=137	max_min_left_minus=0	max_min_left_plus=137	max_min_right=136	max_min_right_minus=0	max_min_right_plus=136	max_pos_hash_score=572	max_right=255	max_right_minus=0	max_right_plus=255	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=1.463e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.29	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.28	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=ATGTGGGAAGTTG
UN	315	.	NC_000913	15671	15671
UN	316	.	NC_000913	15673	15673
UN	317	.	NC_000913	15676	15676
UN	318	.	NC_000913	15678	16443
UN	319	.	NC_000913	20082	20283
UN	320	.	NC_000913	224009	224499
UN	321	.	NC_000913	224504	224504
UN	322	.	NC_000913	225164	225323
UN	323	.	NC_000913	227272	228408
UN	324	.	NC_000913	257908	258683
UN	325	.	NC_000913	270808	270808
UN	326	.	NC_000913	270812	271007
UN	327	.	NC_000913	274249	274863
UN	328	.	NC_000913	279422	279422
UN	329	.	NC_000913	279424	279653
UN	330	.	NC_000913	290912	290914
UN	331	.	NC_000913	290916	291128
UN	332	.	NC_000913	315510	316208
UN	333	.	NC_000913	316213	316213
UN	334	.	NC_000913	381526	382327
UN	335	.	NC_000913	382329	382329
UN	336	.	NC_000913	391974	391974
UN	337	.	NC_000913	391981	391982
UN	338	.	NC_000913	391984	392690
UN	339	.	NC_000913	526107	526108
UN	340	.	NC_000913	526129	526129
UN	341	.	NC_000913	526133	526136
UN	342	.	NC_000913	526138	526448
UN	343	.	NC_000913	526450	526451
UN	344	.	NC_000913	567049	567049
UN	345	.	NC_000913	567055	567770
UN	346	.	NC_000913	574454	575525
UN	347	.	NC_000913	608267	609072
UN	348	.	NC_000913	688131	688765
UN	349	.	NC_000913	1094510	1094510
UN	350	.	NC_000913	1094520	1094520
UN	351	.	NC_000913	1094528	1095233
UN	352	.	NC_000913	1299499	1300697
UN	353	.	NC_000913	1396324	1396966
UN	354	.	NC_000913	1468165	1468170
UN	355	.	NC_000913	1468173	1468175
UN	356	.	NC_000913	1468177	1468177
UN	357	.	NC_000913	1468179	1468967
UN	358	.	NC_000913	1469565	1470234
UN	359	.	NC_000913	1528551	1528922
UN	360	.	NC_000913	1651119	1651119
UN	361	.	NC_000913	1651122	1651263
UN	362	.	NC_000913	1978503	1979278
UN	363	.	NC_000913	2067012	2067035
UN	364	.	NC_000913	2069204	2069205
UN	365	.	NC_000913	2069207	2069207
UN	366	.	NC_000913	2069209	2070020
UN	367	.	NC_000913	2070022	2070022
UN	368	.	NC_000913	2102001	2102001
UN	369	.	NC_000913	2102011	2102657
UN	370	.	NC_000913	2170440	2177975
UN	371	.	NC_000913	2289199	2289827
UN	372	.	NC_000913	2514544	2515341
UN	373	.	NC_000913	2515343	2515345
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UN	375	.	NC_000913	2726336	2728979
UN	376	.	NC_000913	2728998	2728998
UN	377	.	NC_000913	2729849	2729851
UN	378	.	NC_000913	2729853	2730689
UN	379	.	NC_000913	2996622	2997405
UN	380	.	NC_000913	3130430	3131060
UN	381	.	NC_000913	3131062	3131062
UN	382	.	NC_000913	3186355	3186355
UN	383	.	NC_000913	3186358	3186358
UN	384	.	NC_000913	3186361	3186362
UN	385	.	NC_000913	3186372	3186372
UN	386	.	NC_000913	3186375	3186375
UN	387	.	NC_000913	3186378	3186378
UN	388	.	NC_000913	3186380	3187156
UN	389	.	NC_000913	3365837	3366463
UN	390	.	NC_000913	3423935	3424375
UN	391	.	NC_000913	3424938	3426608
UN	392	.	NC_000913	3427210	3428312
UN	393	.	NC_000913	3515217	3515753
UN	394	.	NC_000913	3582125	3583910
UN	395	.	NC_000913	3619537	3620801
UN	396	.	NC_000913	3620805	3620805
UN	397	.	NC_000913	3621359	3622015
UN	398	.	NC_000913	3622017	3622020
UN	399	.	NC_000913	3622023	3622026
UN	400	.	NC_000913	3622028	3622028
UN	401	.	NC_000913	3622030	3622030
UN	402	.	NC_000913	3622032	3622032
UN	403	.	NC_000913	3622037	3622039
UN	404	.	NC_000913	3622041	3622042
UN	405	.	NC_000913	3622046	3622046
UN	406	.	NC_000913	3622050	3622051
UN	407	.	NC_000913	3622054	3622054
UN	408	.	NC_000913	3652293	3652950
UN	409	.	NC_000913	3762530	3762530
UN	410	.	NC_000913	3762536	3763792
UN	411	.	NC_000913	3764337	3764998
UN	412	.	NC_000913	3942311	3943130
UN	413	.	NC_000913	3944348	3945286
UN	414	.	NC_000913	4035450	4035450
UN	415	.	NC_000913	4035454	4035455
UN	416	.	NC_000913	4035457	4035472
UN	417	.	NC_000913	4035476	4035476
UN	418	.	NC_000913	4036017	4036809
UN	419	.	NC_000913	4038119	4038409
UN	420	.	NC_000913	4039013	4039013
UN	421	.	NC_000913	4039015	4039107
UN	422	.	NC_000913	4039671	4040333
UN	423	.	NC_000913	4166585	4166589
UN	424	.	NC_000913	4166594	4166599
UN	425	.	NC_000913	4166922	4167940
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UN	427	.	NC_000913	4208398	4208398
UN	428	.	NC_000913	4208400	4209461
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UN	431	.	NC_000913	4209474	4209474
UN	432	.	NC_000913	4210288	4210288
UN	433	.	NC_000913	4210291	4210291
UN	434	.	NC_000913	4210293	4210293
UN	435	.	NC_000913	4210295	4210299
UN	436	.	NC_000913	4210304	4212846
UN	437	.	NC_000913	4498476	4499231
UN	438	.	NC_000913	4507747	4508416
UN	439	.	NC_000913	4508418	4508423