#=GENOME_DIFF 1.0 #=CREATED 13:48:47 19 Dec 2024 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20241218run12/IH203_S12_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20241218run12/IH203_S12_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20241218run12/IH203_S12_L001_R2_001.fastq.gz #=REFSEQ /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff #=READSEQ /ld1/raw_sequence_data/20241218run12/IH203_S12_L001_R1_001.fastq.gz #=READSEQ /ld1/raw_sequence_data/20241218run12/IH203_S12_L001_R2_001.fastq.gz #=CONVERTED-BASES 321632327 #=CONVERTED-READS 1323788 #=INPUT-BASES 321637198 #=INPUT-READS 1323906 #=MAPPED-BASES 296952924 #=MAPPED-READS 1227145 SNP 1 270 NC_000913 45854 T SNP 2 271 NC_000913 51712 T SNP 3 272 NC_000913 52812 T MOB 4 799,800 NC_000913 57276 IS2 1 5 SNP 5 273 NC_000913 71134 A DEL 6 790,801 NC_000913 257908 776 SNP 7 277 NC_000913 269161 T SNP 8 278 NC_000913 557635 T MOB 9 808,809 NC_000913 568449 IS2 -1 5 SNP 10 372 NC_000913 631633 A SNP 11 373 NC_000913 727115 T SNP 12 374 NC_000913 727117 T SNP 13 375 NC_000913 728330 T SNP 14 376 NC_000913 749268 T SNP 15 377 NC_000913 750845 T SNP 16 378 NC_000913 750858 T SNP 17 379 NC_000913 759426 A SNP 18 380 NC_000913 759576 A SNP 19 381 NC_000913 784462 T SNP 20 382 NC_000913 787273 T SNP 21 383 NC_000913 790185 T SNP 22 384 NC_000913 793306 T SNP 23 385 NC_000913 797186 T SNP 24 386 NC_000913 802526 T SNP 25 387 NC_000913 811317 T SNP 26 389 NC_000913 812699 T SNP 27 390 NC_000913 816122 T SNP 28 391 NC_000913 831431 T SNP 29 392 NC_000913 850617 T SNP 30 393 NC_000913 869690 A SNP 31 394 NC_000913 874129 T SNP 32 395 NC_000913 884712 A SNP 33 396 NC_000913 885116 A SNP 34 397 NC_000913 889829 T SNP 35 398 NC_000913 890342 T SNP 36 399 NC_000913 891909 T SNP 37 400 NC_000913 896433 T SNP 38 401 NC_000913 904702 T SNP 39 402 NC_000913 908889 T SNP 40 403 NC_000913 910080 T SNP 41 404 NC_000913 915852 T SNP 42 405 NC_000913 917753 T SNP 43 406 NC_000913 921399 T SNP 44 407 NC_000913 921756 T SNP 45 408 NC_000913 937458 T SNP 46 409 NC_000913 943967 T SNP 47 410 NC_000913 969683 T SNP 48 411 NC_000913 972831 A SNP 49 412 NC_000913 987152 T SNP 50 413 NC_000913 1041693 T SNP 51 414 NC_000913 1057826 T SNP 52 415 NC_000913 1069024 T SNP 53 416 NC_000913 1072484 T SNP 54 417 NC_000913 1076800 T SNP 55 418 NC_000913 1077916 T SNP 56 419 NC_000913 1078308 T SNP 57 420 NC_000913 1086382 T SNP 58 421 NC_000913 1095379 T SNP 59 422 NC_000913 1098239 T MOB 60 805,810 NC_000913 1105376 IS2 -1 5 SNP 61 423 NC_000913 1111819 T SNP 62 424 NC_000913 1115639 T SNP 63 425 NC_000913 1116975 T SNP 64 426 NC_000913 1121634 T SNP 65 427 NC_000913 1125203 T SNP 66 428 NC_000913 1125597 T SNP 67 429 NC_000913 1128392 T SNP 68 430 NC_000913 1134882 T SNP 69 431 NC_000913 1135255 T SNP 70 432 NC_000913 1135448 T SNP 71 433 NC_000913 1164563 A SNP 72 434 NC_000913 1167940 T SNP 73 436 NC_000913 1196220 T SNP 74 437 NC_000913 1196232 T SNP 75 438 NC_000913 1196245 C SNP 76 439 NC_000913 1196247 G SNP 77 444 NC_000913 1255644 A SNP 78 445 NC_000913 1290881 T DEL 79 792,811 NC_000913 1294035 141 DEL 80 793,812 NC_000913 1299499 1199 DEL 81 813 NC_000913 1303073 12 SNP 82 446 NC_000913 1337394 G SNP 83 447 NC_000913 1353758 A DEL 84 566 NC_000913 1494388 1 SNP 85 567 NC_000913 1517508 T SNP 86 568 NC_000913 1564294 T SNP 87 569 NC_000913 1580143 T SNP 88 570 NC_000913 1591418 T SNP 89 571 NC_000913 1593422 T SNP 90 572 NC_000913 1598229 T SNP 91 573 NC_000913 1605649 T SNP 92 574 NC_000913 1627000 T SNP 93 575 NC_000913 1628875 T SNP 94 601 NC_000913 1637739 A SNP 95 602 NC_000913 1652331 C DEL 96 603 NC_000913 1667887 1 SNP 97 605 NC_000913 1693035 A SNP 98 606 NC_000913 1716110 A SNP 99 607 NC_000913 1723394 C DEL 100 608 NC_000913 1744751 1 SNP 101 609 NC_000913 1784535 A SNP 102 610 NC_000913 1789888 A SNP 103 611 NC_000913 1792138 A MOB 104 816,817 NC_000913 1792772 IS2 -1 5 SNP 105 612 NC_000913 1814697 T SNP 106 613 NC_000913 1834800 A SNP 107 614 NC_000913 1841889 A SNP 108 615 NC_000913 1844327 A SNP 109 616 NC_000913 1890220 A SNP 110 617 NC_000913 1911287 A SNP 111 618 NC_000913 1914184 A SNP 112 619 NC_000913 1918760 A SNP 113 620 NC_000913 1944191 A SNP 114 621 NC_000913 1953879 T SNP 115 622 NC_000913 1954628 T SNP 116 623 NC_000913 1959513 T SNP 117 624 NC_000913 1962183 T SNP 118 625 NC_000913 1964451 T SNP 119 626 NC_000913 1969912 T SNP 120 627 NC_000913 1970990 T SNP 121 628 NC_000913 1973377 T SNP 122 629 NC_000913 1978243 T SNP 123 630 NC_000913 2003264 T SNP 124 631 NC_000913 2032423 A DEL 125 632,633 NC_000913 2173363 2 SNP 126 634 NC_000913 2242121 G MOB 127 822,823 NC_000913 2269876 IS5 1 4 MOB 128 821,826 NC_000913 2319850 IS2 1 5 SNP 129 636 NC_000913 2397444 A MOB 130 818,819 NC_000913 2406780 IS1 -1 8 DEL 131 795,827 NC_000913 2558699 6790 MOB 132 802,803 NC_000913 2666074 IS1 1 9 SNP 133 637 NC_000913 2713696 A SNP 134 639 NC_000913 2821231 A SNP 135 644 NC_000913 3018330 T SNP 136 645 NC_000913 3021885 T SNP 137 646 NC_000913 3022725 T SNP 138 647 NC_000913 3022890 T SNP 139 648 NC_000913 3023453 T SNP 140 649 NC_000913 3025706 A SNP 141 650 NC_000913 3036530 T SNP 142 651 NC_000913 3037220 T SNP 143 652 NC_000913 3045508 T SNP 144 653 NC_000913 3047801 T SNP 145 654 NC_000913 3054549 T SNP 146 655 NC_000913 3061743 T SNP 147 656 NC_000913 3062669 T SNP 148 657 NC_000913 3079623 T SNP 149 660 NC_000913 3083186 T SNP 150 661 NC_000913 3088390 C SNP 151 662 NC_000913 3099793 A SNP 152 663 NC_000913 3099992 A SNP 153 664 NC_000913 3100526 A SNP 154 665 NC_000913 3113731 T SNP 155 666 NC_000913 3115541 A SNP 156 667 NC_000913 3115607 A SNP 157 668 NC_000913 3116497 A SNP 158 669 NC_000913 3117082 A SNP 159 670 NC_000913 3118246 A SNP 160 671 NC_000913 3120989 A SNP 161 672 NC_000913 3123938 A SNP 162 673 NC_000913 3124449 A SNP 163 674 NC_000913 3125051 A SNP 164 675 NC_000913 3126605 A SNP 165 676 NC_000913 3127230 T SNP 166 677 NC_000913 3133041 A SNP 167 678 NC_000913 3135565 A SNP 168 679 NC_000913 3173797 T SNP 169 680 NC_000913 3191118 T SNP 170 681 NC_000913 3227310 A SNP 171 682 NC_000913 3239627 A SNP 172 683 NC_000913 3268970 G SNP 173 684 NC_000913 3338426 A SNP 174 686 NC_000913 3395215 A SNP 175 688 NC_000913 3486205 A INS 176 689 NC_000913 3560455 G DEL 177 796,829 NC_000913 3682261 34 MOB 178 828,830 NC_000913 3737137 IS2 1 5 SNP 179 693 NC_000913 3782932 T SNP 180 694 NC_000913 3809561 T SNP 181 696 NC_000913 3849102 T SNP 182 697 NC_000913 3861543 T SNP 183 698 NC_000913 3862227 T SNP 184 699 NC_000913 3865439 T SNP 185 700 NC_000913 3884604 T SNP 186 701 NC_000913 3884734 T SNP 187 702 NC_000913 3892044 T SNP 188 703 NC_000913 3900687 T SNP 189 705 NC_000913 3921759 T SNP 190 706 NC_000913 3923235 T SNP 191 707 NC_000913 3928607 T SNP 192 708 NC_000913 3929881 T SNP 193 709 NC_000913 3943846 T SNP 194 710 NC_000913 3950830 T SNP 195 711 NC_000913 3958585 T SNP 196 712 NC_000913 3985672 A SNP 197 713 NC_000913 4004371 T SNP 198 714 NC_000913 4012224 T SNP 199 715 NC_000913 4017393 T SNP 200 716 NC_000913 4042505 T SNP 201 717 NC_000913 4048632 T SNP 202 719 NC_000913 4060522 T SNP 203 720 NC_000913 4078229 T SNP 204 721 NC_000913 4099855 T SNP 205 722 NC_000913 4100529 T SNP 206 723 NC_000913 4102105 T MOB 207 831,832 NC_000913 4123923 IS2 -1 5 SNP 208 724 NC_000913 4129874 T MOB 209 833,834 NC_000913 4135180 IS2 -1 5 INS 210 725 NC_000913 4146389 T repeat_length=1 repeat_new_copies=7 repeat_ref_copies=6 repeat_seq=T SNP 211 726 NC_000913 4163984 T SNP 212 728 NC_000913 4187918 T SNP 213 729 NC_000913 4192374 T SNP 214 730 NC_000913 4199021 T SNP 215 731 NC_000913 4231162 A SNP 216 732 NC_000913 4232133 T SNP 217 733 NC_000913 4232947 A SNP 218 734 NC_000913 4233152 A SNP 219 735 NC_000913 4245238 A SNP 220 736 NC_000913 4254504 A SNP 221 738 NC_000913 4264068 A SNP 222 739 NC_000913 4267804 A SNP 223 740 NC_000913 4269058 A SNP 224 741 NC_000913 4269459 A INS 225 742,743 NC_000913 4296381 GC SNP 226 745 NC_000913 4345404 A SNP 227 746 NC_000913 4346287 A SNP 228 747 NC_000913 4349573 A SNP 229 748 NC_000913 4356135 T SNP 230 749 NC_000913 4362225 A SNP 231 750 NC_000913 4363123 A SNP 232 751 NC_000913 4364860 A SNP 233 752 NC_000913 4365662 A SNP 234 753 NC_000913 4367038 A SNP 235 754 NC_000913 4372336 A SNP 236 755 NC_000913 4372474 A SNP 237 757 NC_000913 4395899 T SNP 238 758 NC_000913 4397434 T SNP 239 759 NC_000913 4397478 T SNP 240 760 NC_000913 4405925 T SNP 241 761 NC_000913 4417140 T SNP 242 762 NC_000913 4442824 T SNP 243 763 NC_000913 4445219 T SNP 244 764 NC_000913 4447409 T SNP 245 765 NC_000913 4454328 T SNP 246 766 NC_000913 4456542 T SNP 247 767 NC_000913 4472059 T SNP 248 768 NC_000913 4486822 T SNP 249 769 NC_000913 4492537 T SNP 250 770 NC_000913 4493716 T SNP 251 771 NC_000913 4509072 T SNP 252 772 NC_000913 4510361 T SNP 253 773 NC_000913 4510711 T SNP 254 774 NC_000913 4515901 T SNP 255 775 NC_000913 4517868 T SNP 256 776 NC_000913 4519033 T SNP 257 777 NC_000913 4521873 T SNP 258 778 NC_000913 4524922 A SNP 259 779 NC_000913 4525090 A SNP 260 780 NC_000913 4529317 T MOB 261 824,825 NC_000913 4536236 IS5 1 4 DEL 262 781 NC_000913 4542683 1 DEL 263 797,836 NC_000913 4549192 39 SNP 264 782 NC_000913 4552055 T SNP 265 783 NC_000913 4552344 T SNP 266 784 NC_000913 4560376 T SNP 267 785 NC_000913 4566967 T SNP 268 786 NC_000913 4574257 A SNP 269 787 NC_000913 4579530 T RA 270 . NC_000913 45854 0 C T consensus_score=215.3 frequency=1 major_base=T major_cov=28/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/35 RA 271 . NC_000913 51712 0 C T bias_e_value=3923310 bias_p_value=0.845239 consensus_score=270.0 fisher_strand_p_value=0.503086 frequency=1 ks_quality_p_value=0.990048 major_base=T major_cov=35/44 major_frequency=9.753e-01 minor_base=G minor_cov=0/2 new_cov=35/44 polymorphism_frequency=9.753e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/46 RA 272 . NC_000913 52812 0 C T bias_e_value=3713150 bias_p_value=0.799964 consensus_score=258.2 fisher_strand_p_value=0.440476 frequency=1 ks_quality_p_value=0.995421 major_base=T major_cov=36/47 major_frequency=9.881e-01 minor_base=G minor_cov=1/0 new_cov=36/47 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/47 RA 273 . NC_000913 71134 0 G A consensus_score=241.0 frequency=1 major_base=A major_cov=29/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/40 RA 274 . NC_000913 115797 0 C A bias_e_value=2.11199 bias_p_value=4.55009e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=123.3 fisher_strand_p_value=2.4566e-08 frequency=2.241e-01 ks_quality_p_value=1 major_base=C major_cov=38/7 major_frequency=7.759e-01 minor_base=A minor_cov=0/13 new_cov=0/13 polymorphism_frequency=2.241e-01 polymorphism_score=12.4 prediction=polymorphism ref_cov=38/7 total_cov=38/20 RA 275 . NC_000913 119396 0 C T bias_e_value=2362.41 bias_p_value=0.000508959 consensus_reject=FREQUENCY_CUTOFF consensus_score=100.5 fisher_strand_p_value=4.63569e-05 frequency=2.203e-01 ks_quality_p_value=1 major_base=C major_cov=17/29 major_frequency=7.797e-01 minor_base=T minor_cov=13/0 new_cov=13/0 polymorphism_frequency=2.203e-01 polymorphism_score=13.2 prediction=polymorphism ref_cov=17/29 total_cov=32/29 RA 276 . NC_000913 203055 0 G T bias_e_value=553.92 bias_p_value=0.000119337 consensus_reject=FREQUENCY_CUTOFF consensus_score=170.1 fisher_strand_p_value=1.32747e-05 frequency=2.391e-01 ks_quality_p_value=0.715494 major_base=G major_cov=26/44 major_frequency=7.609e-01 minor_base=T minor_cov=20/2 new_cov=20/2 polymorphism_frequency=2.391e-01 polymorphism_score=17.3 prediction=polymorphism ref_cov=26/44 total_cov=47/46 RA 277 . NC_000913 269161 0 C T consensus_score=140.1 frequency=1 major_base=T major_cov=20/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/21 RA 278 . NC_000913 557635 0 A T consensus_score=218.7 frequency=1 major_base=T major_cov=34/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/30 RA 279 . NC_000913 566173 0 C G bias_e_value=4636880 bias_p_value=0.998972 consensus_reject=FREQUENCY_CUTOFF consensus_score=127.8 fisher_strand_p_value=1 frequency=3.511e-01 ks_quality_p_value=0.955003 major_base=C major_cov=32/29 major_frequency=6.489e-01 minor_base=G minor_cov=18/15 new_cov=18/15 polymorphism_frequency=3.511e-01 polymorphism_score=113.8 prediction=polymorphism ref_cov=32/29 total_cov=50/44 RA 280 . NC_000913 566205 0 T C bias_e_value=2342490 bias_p_value=0.504668 consensus_reject=FREQUENCY_CUTOFF consensus_score=94.5 fisher_strand_p_value=0.673609 frequency=3.505e-01 ks_quality_p_value=0.281285 major_base=T major_cov=30/33 major_frequency=6.495e-01 minor_base=C minor_cov=18/16 new_cov=18/16 polymorphism_frequency=3.505e-01 polymorphism_score=89.2 prediction=polymorphism ref_cov=30/33 total_cov=48/50 RA 281 . NC_000913 566245 0 G A bias_e_value=3665690 bias_p_value=0.789739 consensus_reject=FREQUENCY_CUTOFF consensus_score=129.9 fisher_strand_p_value=0.66937 frequency=3.402e-01 ks_quality_p_value=0.636816 major_base=G major_cov=31/33 major_frequency=6.598e-01 minor_base=A minor_cov=18/15 new_cov=18/15 polymorphism_frequency=3.402e-01 polymorphism_score=69.1 prediction=polymorphism ref_cov=31/33 total_cov=49/48 RA 282 . NC_000913 566277 0 C T bias_e_value=3426180 bias_p_value=0.738137 consensus_reject=FREQUENCY_CUTOFF consensus_score=97.4 fisher_strand_p_value=0.668476 frequency=3.617e-01 ks_quality_p_value=0.553895 major_base=C major_cov=28/32 major_frequency=6.383e-01 minor_base=T minor_cov=18/16 new_cov=18/16 polymorphism_frequency=3.617e-01 polymorphism_score=90.5 prediction=polymorphism ref_cov=28/32 total_cov=46/48 RA 283 . NC_000913 566323 0 C T bias_e_value=1407410 bias_p_value=0.303214 consensus_reject=FREQUENCY_CUTOFF consensus_score=112.0 fisher_strand_p_value=0.464678 frequency=3.038e-01 ks_quality_p_value=0.190564 major_base=C major_cov=26/29 major_frequency=6.962e-01 minor_base=T minor_cov=14/10 new_cov=14/10 polymorphism_frequency=3.038e-01 polymorphism_score=56.0 prediction=polymorphism ref_cov=26/29 total_cov=42/39 RA 284 . NC_000913 566326 0 T C bias_e_value=3156300 bias_p_value=0.679995 consensus_reject=FREQUENCY_CUTOFF consensus_score=93.5 fisher_strand_p_value=0.464678 frequency=3.000e-01 ks_quality_p_value=0.679965 major_base=T major_cov=26/30 major_frequency=7.000e-01 minor_base=C minor_cov=14/10 new_cov=14/10 polymorphism_frequency=3.000e-01 polymorphism_score=66.2 prediction=polymorphism ref_cov=26/30 total_cov=40/40 RA 285 . NC_000913 566332 0 T G bias_e_value=3108460 bias_p_value=0.669689 consensus_reject=FREQUENCY_CUTOFF consensus_score=113.8 fisher_strand_p_value=0.325596 frequency=2.805e-01 ks_quality_p_value=0.943276 major_base=T major_cov=27/32 major_frequency=7.195e-01 minor_base=G minor_cov=14/9 new_cov=14/9 polymorphism_frequency=2.805e-01 polymorphism_score=64.3 prediction=polymorphism ref_cov=27/32 total_cov=41/41 RA 286 . NC_000913 566356 0 T C bias_e_value=2132400 bias_p_value=0.459405 consensus_reject=FREQUENCY_CUTOFF consensus_score=148.9 fisher_strand_p_value=0.175808 frequency=2.125e-01 ks_quality_p_value=0.929412 major_base=T major_cov=28/35 major_frequency=7.875e-01 minor_base=C minor_cov=11/6 new_cov=11/6 polymorphism_frequency=2.125e-01 polymorphism_score=38.6 prediction=polymorphism ref_cov=28/35 total_cov=39/41 RA 287 . NC_000913 566435 0 G A bias_e_value=1599070 bias_p_value=0.344504 consensus_reject=FREQUENCY_CUTOFF consensus_score=162.0 fisher_strand_p_value=0.314949 frequency=2.353e-01 ks_quality_p_value=0.337421 major_base=G major_cov=27/38 major_frequency=7.647e-01 minor_base=A minor_cov=11/9 new_cov=11/9 polymorphism_frequency=2.353e-01 polymorphism_score=46.1 prediction=polymorphism ref_cov=27/38 total_cov=38/47 RA 288 . NC_000913 566444 0 T C bias_e_value=4542100 bias_p_value=0.978552 consensus_reject=FREQUENCY_CUTOFF consensus_score=136.7 fisher_strand_p_value=0.806805 frequency=2.644e-01 ks_quality_p_value=0.991773 major_base=T major_cov=27/37 major_frequency=7.356e-01 minor_base=C minor_cov=11/12 new_cov=11/12 polymorphism_frequency=2.644e-01 polymorphism_score=58.5 prediction=polymorphism ref_cov=27/37 total_cov=38/49 RA 289 . NC_000913 566451 0 T C bias_e_value=4533560 bias_p_value=0.976713 consensus_reject=FREQUENCY_CUTOFF consensus_score=123.0 fisher_strand_p_value=0.805988 frequency=2.738e-01 ks_quality_p_value=0.982772 major_base=T major_cov=26/35 major_frequency=7.262e-01 minor_base=C minor_cov=11/12 new_cov=11/12 polymorphism_frequency=2.738e-01 polymorphism_score=55.4 prediction=polymorphism ref_cov=26/35 total_cov=37/47 RA 290 . NC_000913 566463 0 T C bias_e_value=4543160 bias_p_value=0.978782 consensus_reject=FREQUENCY_CUTOFF consensus_score=94.5 fisher_strand_p_value=1 frequency=3.182e-01 ks_quality_p_value=0.8012 major_base=T major_cov=26/34 major_frequency=6.818e-01 minor_base=C minor_cov=12/16 new_cov=12/16 polymorphism_frequency=3.182e-01 polymorphism_score=77.1 prediction=polymorphism ref_cov=26/34 total_cov=38/50 RA 291 . NC_000913 566468 0 C T bias_e_value=4417810 bias_p_value=0.951774 consensus_reject=FREQUENCY_CUTOFF consensus_score=91.6 fisher_strand_p_value=0.820844 frequency=3.690e-01 ks_quality_p_value=0.860046 major_base=C major_cov=22/31 major_frequency=6.310e-01 minor_base=T minor_cov=14/17 new_cov=14/17 polymorphism_frequency=3.690e-01 polymorphism_score=77.1 prediction=polymorphism ref_cov=22/31 total_cov=37/50 RA 292 . NC_000913 566492 0 G T bias_e_value=4342630 bias_p_value=0.935579 consensus_reject=FREQUENCY_CUTOFF consensus_score=36.4 fisher_strand_p_value=0.663654 frequency=4.535e-01 ks_quality_p_value=0.999379 major_base=G major_cov=18/29 major_frequency=5.465e-01 minor_base=T minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.535e-01 polymorphism_score=110.4 prediction=polymorphism ref_cov=18/29 total_cov=36/51 RA 293 . NC_000913 566493 0 G A bias_e_value=4505370 bias_p_value=0.97064 consensus_reject=FREQUENCY_CUTOFF consensus_score=36.0 fisher_strand_p_value=0.827228 frequency=4.483e-01 ks_quality_p_value=0.92801 major_base=G major_cov=19/29 major_frequency=5.517e-01 minor_base=A minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.483e-01 polymorphism_score=104.9 prediction=polymorphism ref_cov=19/29 total_cov=36/51 RA 294 . NC_000913 566498 0 C T bias_e_value=3452210 bias_p_value=0.743746 consensus_reject=FREQUENCY_CUTOFF consensus_score=31.3 fisher_strand_p_value=0.829252 frequency=4.382e-01 ks_quality_p_value=0.453365 major_base=C major_cov=20/30 major_frequency=5.618e-01 minor_base=T minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.382e-01 polymorphism_score=108.6 prediction=polymorphism ref_cov=20/30 total_cov=37/52 RA 295 . NC_000913 566510 0 G C bias_e_value=2527060 bias_p_value=0.544431 consensus_reject=FREQUENCY_CUTOFF consensus_score=39.9 fisher_strand_p_value=1 frequency=4.286e-01 ks_quality_p_value=0.214318 major_base=G major_cov=22/30 major_frequency=5.714e-01 minor_base=C minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.286e-01 polymorphism_score=141.2 prediction=polymorphism ref_cov=22/30 total_cov=39/52 RA 296 . NC_000913 566513 0 C T bias_e_value=3503240 bias_p_value=0.754739 consensus_reject=FREQUENCY_CUTOFF consensus_score=40.8 fisher_strand_p_value=0.829252 frequency=4.382e-01 ks_quality_p_value=0.467128 major_base=C major_cov=20/30 major_frequency=5.618e-01 minor_base=T minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.382e-01 polymorphism_score=105.0 prediction=polymorphism ref_cov=20/30 total_cov=39/52 RA 297 . NC_000913 566519 0 T C bias_e_value=2045870 bias_p_value=0.440764 consensus_reject=FREQUENCY_CUTOFF consensus_score=23.3 fisher_strand_p_value=1 frequency=4.286e-01 ks_quality_p_value=0.153285 major_base=T major_cov=22/30 major_frequency=5.714e-01 minor_base=C minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.286e-01 polymorphism_score=118.6 prediction=polymorphism ref_cov=22/30 total_cov=39/52 RA 298 . NC_000913 566522 0 C A bias_e_value=4284790 bias_p_value=0.923117 consensus_reject=FREQUENCY_CUTOFF consensus_score=60.0 fisher_strand_p_value=1 frequency=4.239e-01 ks_quality_p_value=0.634437 major_base=C major_cov=23/30 major_frequency=5.761e-01 minor_base=A minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.239e-01 polymorphism_score=117.2 prediction=polymorphism ref_cov=23/30 total_cov=40/52 RA 299 . NC_000913 566528 0 A G bias_e_value=498878 bias_p_value=0.107479 consensus_reject=FREQUENCY_CUTOFF consensus_score=20.0 fisher_strand_p_value=1 frequency=4.239e-01 ks_quality_p_value=0.0223968 major_base=A major_cov=24/29 major_frequency=5.761e-01 minor_base=G minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.239e-01 polymorphism_score=125.7 prediction=polymorphism ref_cov=24/29 total_cov=41/51 RA 300 . NC_000913 566530 1 . T bias_e_value=1458530 bias_p_value=0.314227 consensus_reject=FREQUENCY_CUTOFF consensus_score=10.4 fisher_strand_p_value=1 frequency=4.286e-01 ks_quality_p_value=0.0931423 major_base=. major_cov=23/29 major_frequency=5.714e-01 minor_base=T minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.286e-01 polymorphism_score=204.6 prediction=polymorphism ref_cov=23/29 total_cov=40/51 RA 301 . NC_000913 566532 0 A T bias_e_value=4181120 bias_p_value=0.900783 consensus_reject=FREQUENCY_CUTOFF consensus_score=39.3 fisher_strand_p_value=1 frequency=4.286e-01 ks_quality_p_value=0.589015 major_base=A major_cov=22/30 major_frequency=5.714e-01 minor_base=T minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.286e-01 polymorphism_score=129.1 prediction=polymorphism ref_cov=22/30 total_cov=40/52 RA 302 . NC_000913 566535 0 T . bias_e_value=2241350 bias_p_value=0.482877 consensus_reject=FREQUENCY_CUTOFF consensus_score=189.0 fisher_strand_p_value=1 frequency=4.239e-01 ks_quality_p_value=0.176644 major_base=T major_cov=22/31 major_frequency=5.761e-01 minor_base=. minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.239e-01 polymorphism_score=160.8 prediction=polymorphism ref_cov=22/31 total_cov=39/53 RA 303 . NC_000913 566536 0 G A bias_e_value=3168870 bias_p_value=0.682704 consensus_reject=FREQUENCY_CUTOFF consensus_score=53.7 fisher_strand_p_value=1 frequency=4.286e-01 ks_quality_p_value=0.318323 major_base=G major_cov=22/30 major_frequency=5.714e-01 minor_base=A minor_cov=17/22 new_cov=17/22 polymorphism_frequency=4.286e-01 polymorphism_score=108.3 prediction=polymorphism ref_cov=22/30 total_cov=39/53 RA 304 . NC_000913 566543 0 A T bias_e_value=3855300 bias_p_value=0.830588 consensus_reject=FREQUENCY_CUTOFF consensus_score=49.5 fisher_strand_p_value=0.837669 frequency=4.242e-01 ks_quality_p_value=0.570235 major_base=A major_cov=25/32 major_frequency=5.758e-01 minor_base=T minor_cov=17/25 new_cov=17/25 polymorphism_frequency=4.242e-01 polymorphism_score=135.6 prediction=polymorphism ref_cov=25/32 total_cov=43/57 RA 305 . NC_000913 566547 0 C A bias_e_value=1407350 bias_p_value=0.3032 consensus_reject=FREQUENCY_CUTOFF consensus_score=27.4 fisher_strand_p_value=1 frequency=4.545e-01 ks_quality_p_value=0.0885452 major_base=C major_cov=24/30 major_frequency=5.455e-01 minor_base=A minor_cov=20/25 new_cov=20/25 polymorphism_frequency=4.545e-01 polymorphism_score=135.3 prediction=polymorphism ref_cov=24/30 total_cov=44/55 RA 306 . NC_000913 566565 0 A G bias_e_value=4159440 bias_p_value=0.896112 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-5.7 fisher_strand_p_value=0.846018 frequency=4.766e-01 ks_quality_p_value=0.685934 major_base=A major_cov=26/30 major_frequency=5.234e-01 minor_base=G minor_cov=22/29 new_cov=22/29 polymorphism_frequency=4.766e-01 polymorphism_score=158.5 prediction=polymorphism ref_cov=26/30 total_cov=48/60 RA 307 . NC_000913 566570 0 A C bias_e_value=1377490 bias_p_value=0.296768 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-4.3 fisher_strand_p_value=0.850665 frequency=4.595e-01 ks_quality_p_value=0.100989 major_base=A major_cov=27/33 major_frequency=5.405e-01 minor_base=C minor_cov=22/29 new_cov=22/29 polymorphism_frequency=4.595e-01 polymorphism_score=162.8 prediction=polymorphism ref_cov=27/33 total_cov=49/62 RA 308 . NC_000913 566597 0 T C bias_e_value=3635480 bias_p_value=0.783229 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=8.5 fisher_strand_p_value=0.716243 frequency=4.915e-01 ks_quality_p_value=0.584593 major_base=T major_cov=29/31 major_frequency=5.085e-01 minor_base=C minor_cov=26/32 new_cov=26/32 polymorphism_frequency=4.915e-01 polymorphism_score=184.5 prediction=polymorphism ref_cov=29/31 total_cov=56/63 RA 309 . NC_000913 566651 0 T C bias_e_value=1310390 bias_p_value=0.282312 consensus_reject=FREQUENCY_CUTOFF consensus_score=20.8 fisher_strand_p_value=0.471217 frequency=5.041e-01 ks_quality_p_value=0.169986 major_base=C major_cov=26/36 major_frequency=5.041e-01 minor_base=T minor_cov=30/31 new_cov=26/36 polymorphism_frequency=5.041e-01 polymorphism_score=171.0 prediction=polymorphism ref_cov=30/31 total_cov=56/68 RA 310 . NC_000913 566728 0 G T bias_e_value=852324 bias_p_value=0.183625 consensus_reject=FREQUENCY_CUTOFF consensus_score=103.5 fisher_strand_p_value=0.364753 frequency=3.452e-01 ks_quality_p_value=0.122555 major_base=G major_cov=29/26 major_frequency=6.548e-01 minor_base=T minor_cov=12/17 new_cov=12/17 polymorphism_frequency=3.452e-01 polymorphism_score=86.1 prediction=polymorphism ref_cov=29/26 total_cov=41/43 RA 311 . NC_000913 566740 0 A G bias_e_value=3629310 bias_p_value=0.781901 consensus_reject=FREQUENCY_CUTOFF consensus_score=81.2 fisher_strand_p_value=0.487849 frequency=3.373e-01 ks_quality_p_value=0.855157 major_base=A major_cov=29/26 major_frequency=6.627e-01 minor_base=G minor_cov=12/16 new_cov=12/16 polymorphism_frequency=3.373e-01 polymorphism_score=73.1 prediction=polymorphism ref_cov=29/26 total_cov=41/42 RA 312 . NC_000913 566742 0 A C bias_e_value=3858450 bias_p_value=0.831266 consensus_reject=FREQUENCY_CUTOFF consensus_score=89.2 fisher_strand_p_value=0.487849 frequency=3.373e-01 ks_quality_p_value=0.981015 major_base=A major_cov=29/26 major_frequency=6.627e-01 minor_base=C minor_cov=12/16 new_cov=12/16 polymorphism_frequency=3.373e-01 polymorphism_score=78.4 prediction=polymorphism ref_cov=29/26 total_cov=41/42 RA 313 . NC_000913 566756 0 G C bias_e_value=3060610 bias_p_value=0.659379 consensus_reject=FREQUENCY_CUTOFF consensus_score=113.9 fisher_strand_p_value=0.495165 frequency=3.256e-01 ks_quality_p_value=0.602825 major_base=G major_cov=30/28 major_frequency=6.744e-01 minor_base=C minor_cov=12/16 new_cov=12/16 polymorphism_frequency=3.256e-01 polymorphism_score=100.0 prediction=polymorphism ref_cov=30/28 total_cov=42/44 RA 314 . NC_000913 566770 0 C A bias_e_value=2816290 bias_p_value=0.606743 consensus_reject=FREQUENCY_CUTOFF consensus_score=114.2 fisher_strand_p_value=0.814687 frequency=3.023e-01 ks_quality_p_value=0.315967 major_base=C major_cov=31/29 major_frequency=6.977e-01 minor_base=A minor_cov=12/14 new_cov=12/14 polymorphism_frequency=3.023e-01 polymorphism_score=71.8 prediction=polymorphism ref_cov=31/29 total_cov=43/43 RA 315 . NC_000913 568052 0 T C bias_e_value=274110 bias_p_value=0.0590545 consensus_reject=FREQUENCY_CUTOFF consensus_score=94.7 fisher_strand_p_value=0.799225 frequency=2.917e-01 ks_quality_p_value=0.0133337 major_base=T major_cov=24/27 major_frequency=7.083e-01 minor_base=C minor_cov=9/12 new_cov=9/12 polymorphism_frequency=2.917e-01 polymorphism_score=52.6 prediction=polymorphism ref_cov=24/27 total_cov=35/39 RA 316 . NC_000913 568067 0 G A bias_e_value=575467 bias_p_value=0.123979 consensus_reject=FREQUENCY_CUTOFF consensus_score=130.5 fisher_strand_p_value=0.372486 frequency=2.059e-01 ks_quality_p_value=0.0720827 major_base=G major_cov=28/26 major_frequency=7.941e-01 minor_base=A minor_cov=5/9 new_cov=5/9 polymorphism_frequency=2.059e-01 polymorphism_score=28.4 prediction=polymorphism ref_cov=28/26 total_cov=33/35 RA 317 . NC_000913 568079 0 C T bias_e_value=848520 bias_p_value=0.182806 consensus_reject=FREQUENCY_CUTOFF consensus_score=129.9 fisher_strand_p_value=0.537228 frequency=2.000e-01 ks_quality_p_value=0.0827189 major_base=C major_cov=27/25 major_frequency=8.000e-01 minor_base=T minor_cov=5/8 new_cov=5/8 polymorphism_frequency=2.000e-01 polymorphism_score=24.4 prediction=polymorphism ref_cov=27/25 total_cov=33/33 RA 318 . NC_000913 568085 0 C T bias_e_value=1037980 bias_p_value=0.223624 consensus_reject=FREQUENCY_CUTOFF consensus_score=124.8 fisher_strand_p_value=0.537228 frequency=2.000e-01 ks_quality_p_value=0.108275 major_base=C major_cov=27/25 major_frequency=8.000e-01 minor_base=T minor_cov=5/8 new_cov=5/8 polymorphism_frequency=2.000e-01 polymorphism_score=25.8 prediction=polymorphism ref_cov=27/25 total_cov=32/33 RA 319 . NC_000913 568086 0 G A bias_e_value=619441 bias_p_value=0.133453 consensus_reject=FREQUENCY_CUTOFF consensus_score=118.7 fisher_strand_p_value=0.535641 frequency=2.031e-01 ks_quality_p_value=0.0550813 major_base=G major_cov=27/24 major_frequency=7.969e-01 minor_base=A minor_cov=5/8 new_cov=5/8 polymorphism_frequency=2.031e-01 polymorphism_score=26.9 prediction=polymorphism ref_cov=27/24 total_cov=32/32 RA 320 . NC_000913 568088 0 T C bias_e_value=2654850 bias_p_value=0.571963 consensus_reject=FREQUENCY_CUTOFF consensus_score=115.1 fisher_strand_p_value=0.535641 frequency=2.031e-01 ks_quality_p_value=0.434414 major_base=T major_cov=27/24 major_frequency=7.969e-01 minor_base=C minor_cov=5/8 new_cov=5/8 polymorphism_frequency=2.031e-01 polymorphism_score=27.2 prediction=polymorphism ref_cov=27/24 total_cov=32/32 RA 321 . NC_000913 568091 0 T A bias_e_value=3222560 bias_p_value=0.69427 consensus_reject=FREQUENCY_CUTOFF consensus_score=134.4 fisher_strand_p_value=0.756032 frequency=2.000e-01 ks_quality_p_value=0.434598 major_base=T major_cov=23/25 major_frequency=8.000e-01 minor_base=A minor_cov=5/7 new_cov=5/7 polymorphism_frequency=2.000e-01 polymorphism_score=31.8 prediction=polymorphism ref_cov=23/25 total_cov=31/32 RA 322 . NC_000913 578118 0 A C bias_e_value=1162960 bias_p_value=0.250549 consensus_reject=FREQUENCY_CUTOFF consensus_score=118.6 fisher_strand_p_value=0.0791479 frequency=2.623e-01 ks_quality_p_value=0.857969 major_base=A major_cov=27/18 major_frequency=7.377e-01 minor_base=C minor_cov=5/11 new_cov=5/11 polymorphism_frequency=2.623e-01 polymorphism_score=36.6 prediction=polymorphism ref_cov=27/18 total_cov=32/29 RA 323 . NC_000913 578130 0 A C bias_e_value=1360040 bias_p_value=0.293007 consensus_reject=FREQUENCY_CUTOFF consensus_score=104.7 fisher_strand_p_value=0.152195 frequency=2.787e-01 ks_quality_p_value=0.554431 major_base=A major_cov=26/18 major_frequency=7.213e-01 minor_base=C minor_cov=6/11 new_cov=6/11 polymorphism_frequency=2.787e-01 polymorphism_score=39.0 prediction=polymorphism ref_cov=26/18 total_cov=32/29 RA 324 . NC_000913 578140 0 A G bias_e_value=160551 bias_p_value=0.0345892 consensus_reject=FREQUENCY_CUTOFF consensus_score=117.0 fisher_strand_p_value=0.138693 frequency=2.500e-01 ks_quality_p_value=0.0403118 major_base=A major_cov=26/19 major_frequency=7.500e-01 minor_base=G minor_cov=5/10 new_cov=5/10 polymorphism_frequency=2.500e-01 polymorphism_score=40.7 prediction=polymorphism ref_cov=26/19 total_cov=31/30 RA 325 . NC_000913 578158 0 A T bias_e_value=373741 bias_p_value=0.0805191 consensus_reject=FREQUENCY_CUTOFF consensus_score=103.6 fisher_strand_p_value=0.0892252 frequency=3.091e-01 ks_quality_p_value=0.17488 major_base=A major_cov=21/17 major_frequency=6.909e-01 minor_base=T minor_cov=5/12 new_cov=5/12 polymorphism_frequency=3.091e-01 polymorphism_score=53.7 prediction=polymorphism ref_cov=21/17 total_cov=26/29 RA 326 . NC_000913 578172 0 G T bias_e_value=29656.4 bias_p_value=0.00638918 consensus_reject=FREQUENCY_CUTOFF consensus_score=93.6 fisher_strand_p_value=0.138862 frequency=3.269e-01 ks_quality_p_value=0.00564462 major_base=G major_cov=19/16 major_frequency=6.731e-01 minor_base=T minor_cov=5/12 new_cov=5/12 polymorphism_frequency=3.269e-01 polymorphism_score=47.7 prediction=polymorphism ref_cov=19/16 total_cov=24/28 RA 327 . NC_000913 578175 0 C T bias_e_value=56638.1 bias_p_value=0.0122021 consensus_reject=FREQUENCY_CUTOFF consensus_score=80.0 fisher_strand_p_value=0.135735 frequency=3.333e-01 ks_quality_p_value=0.0121337 major_base=C major_cov=19/15 major_frequency=6.667e-01 minor_base=T minor_cov=5/12 new_cov=5/12 polymorphism_frequency=3.333e-01 polymorphism_score=42.9 prediction=polymorphism ref_cov=19/15 total_cov=24/27 RA 328 . NC_000913 578196 0 A C bias_e_value=1117030 bias_p_value=0.240653 consensus_reject=FREQUENCY_CUTOFF consensus_score=86.4 fisher_strand_p_value=0.556527 frequency=3.400e-01 ks_quality_p_value=0.115473 major_base=A major_cov=15/18 major_frequency=6.600e-01 minor_base=C minor_cov=6/11 new_cov=6/11 polymorphism_frequency=3.400e-01 polymorphism_score=54.6 prediction=polymorphism ref_cov=15/18 total_cov=21/29 RA 329 . NC_000913 578199 0 C T bias_e_value=353219 bias_p_value=0.0760977 consensus_reject=FREQUENCY_CUTOFF consensus_score=81.0 fisher_strand_p_value=0.374749 frequency=3.265e-01 ks_quality_p_value=0.0388252 major_base=C major_cov=15/18 major_frequency=6.735e-01 minor_base=T minor_cov=5/11 new_cov=5/11 polymorphism_frequency=3.265e-01 polymorphism_score=37.5 prediction=polymorphism ref_cov=15/18 total_cov=21/29 RA 330 . NC_000913 578200 0 G A bias_e_value=1679880 bias_p_value=0.361914 consensus_reject=FREQUENCY_CUTOFF consensus_score=79.3 fisher_strand_p_value=0.374749 frequency=3.265e-01 ks_quality_p_value=0.304641 major_base=G major_cov=15/18 major_frequency=6.735e-01 minor_base=A minor_cov=5/11 new_cov=5/11 polymorphism_frequency=3.265e-01 polymorphism_score=39.2 prediction=polymorphism ref_cov=15/18 total_cov=21/29 RA 331 . NC_000913 578210 0 T C bias_e_value=358638 bias_p_value=0.0772651 consensus_reject=FREQUENCY_CUTOFF consensus_score=66.8 fisher_strand_p_value=0.358529 frequency=3.265e-01 ks_quality_p_value=0.0413532 major_base=T major_cov=16/17 major_frequency=6.735e-01 minor_base=C minor_cov=5/11 new_cov=5/11 polymorphism_frequency=3.265e-01 polymorphism_score=43.1 prediction=polymorphism ref_cov=16/17 total_cov=21/28 RA 332 . NC_000913 578244 0 A G bias_e_value=963274 bias_p_value=0.207528 consensus_reject=FREQUENCY_CUTOFF consensus_score=78.6 fisher_strand_p_value=0.229295 frequency=3.265e-01 ks_quality_p_value=0.229427 major_base=A major_cov=17/16 major_frequency=6.735e-01 minor_base=G minor_cov=5/11 new_cov=5/11 polymorphism_frequency=3.265e-01 polymorphism_score=40.7 prediction=polymorphism ref_cov=17/16 total_cov=22/28 RA 333 . NC_000913 578331 0 G T bias_e_value=910270 bias_p_value=0.196109 consensus_reject=FREQUENCY_CUTOFF consensus_score=49.8 fisher_strand_p_value=0.204185 frequency=4.831e-01 ks_quality_p_value=0.238888 major_base=G major_cov=17/29 major_frequency=5.169e-01 minor_base=T minor_cov=22/21 new_cov=22/21 polymorphism_frequency=4.831e-01 polymorphism_score=121.6 prediction=polymorphism ref_cov=17/29 total_cov=39/50 RA 334 . NC_000913 578427 0 G C bias_e_value=3036030 bias_p_value=0.654084 consensus_reject=FREQUENCY_CUTOFF consensus_score=17.1 fisher_strand_p_value=0.34224 frequency=5.370e-01 ks_quality_p_value=0.859467 major_base=C major_cov=31/27 major_frequency=5.370e-01 minor_base=G minor_cov=22/28 new_cov=31/27 polymorphism_frequency=5.370e-01 polymorphism_score=179.7 prediction=polymorphism ref_cov=22/28 total_cov=54/56 RA 335 . NC_000913 578571 0 C T bias_e_value=74108.9 bias_p_value=0.0159661 consensus_reject=FREQUENCY_CUTOFF consensus_score=51.7 fisher_strand_p_value=0.684465 frequency=5.980e-01 ks_quality_p_value=0.00328681 major_base=T major_cov=25/36 major_frequency=5.980e-01 minor_base=C minor_cov=19/22 new_cov=25/36 polymorphism_frequency=5.980e-01 polymorphism_score=120.1 prediction=polymorphism ref_cov=19/22 total_cov=44/60 RA 336 . NC_000913 578574 0 A C bias_e_value=2989060 bias_p_value=0.643965 consensus_reject=FREQUENCY_CUTOFF consensus_score=67.8 fisher_strand_p_value=0.839355 frequency=5.882e-01 ks_quality_p_value=0.340701 major_base=C major_cov=25/35 major_frequency=5.882e-01 minor_base=A minor_cov=19/23 new_cov=25/35 polymorphism_frequency=5.882e-01 polymorphism_score=115.6 prediction=polymorphism ref_cov=19/23 total_cov=44/59 RA 337 . NC_000913 578605 0 T G bias_e_value=4375320 bias_p_value=0.942622 consensus_reject=FREQUENCY_CUTOFF consensus_score=77.1 fisher_strand_p_value=0.834627 frequency=5.876e-01 ks_quality_p_value=0.815893 major_base=G major_cov=23/34 major_frequency=5.876e-01 minor_base=T minor_cov=15/25 new_cov=23/34 polymorphism_frequency=5.876e-01 polymorphism_score=111.4 prediction=polymorphism ref_cov=15/25 total_cov=38/59 RA 338 . NC_000913 578729 0 A G bias_e_value=531965 bias_p_value=0.114607 consensus_reject=FREQUENCY_CUTOFF consensus_score=69.7 fisher_strand_p_value=0.30413 frequency=5.918e-01 ks_quality_p_value=0.0798796 major_base=G major_cov=26/32 major_frequency=5.918e-01 minor_base=A minor_cov=23/17 new_cov=26/32 polymorphism_frequency=5.918e-01 polymorphism_score=109.7 prediction=polymorphism ref_cov=23/17 total_cov=49/49 RA 339 . NC_000913 578809 0 T C bias_e_value=122884 bias_p_value=0.0264741 consensus_reject=FREQUENCY_CUTOFF consensus_score=50.3 fisher_strand_p_value=0.218541 frequency=5.773e-01 ks_quality_p_value=0.0186255 major_base=C major_cov=28/28 major_frequency=5.773e-01 minor_base=T minor_cov=26/15 new_cov=28/28 polymorphism_frequency=5.773e-01 polymorphism_score=111.2 prediction=polymorphism ref_cov=26/15 total_cov=54/43 RA 340 . NC_000913 578811 0 T G bias_e_value=18414.2 bias_p_value=0.00396717 consensus_reject=FREQUENCY_CUTOFF consensus_score=22.8 fisher_strand_p_value=0.410198 frequency=5.579e-01 ks_quality_p_value=0.00111266 major_base=G major_cov=28/25 major_frequency=5.579e-01 minor_base=T minor_cov=26/16 new_cov=28/25 polymorphism_frequency=5.579e-01 polymorphism_score=128.6 prediction=polymorphism ref_cov=26/16 total_cov=54/42 RA 341 . NC_000913 578831 0 T C bias_e_value=7922.53 bias_p_value=0.00170683 consensus_reject=FREQUENCY_CUTOFF consensus_score=50.2 fisher_strand_p_value=0.151234 frequency=5.714e-01 ks_quality_p_value=0.00117088 major_base=C major_cov=27/29 major_frequency=5.714e-01 minor_base=T minor_cov=27/15 new_cov=27/29 polymorphism_frequency=5.714e-01 polymorphism_score=116.5 prediction=polymorphism ref_cov=27/15 total_cov=54/44 RA 342 . NC_000913 579004 0 C T bias_e_value=1523410 bias_p_value=0.328204 consensus_reject=FREQUENCY_CUTOFF consensus_score=22.0 fisher_strand_p_value=0.100101 frequency=5.521e-01 ks_quality_p_value=0.990094 major_base=T major_cov=22/31 major_frequency=5.521e-01 minor_base=C minor_cov=26/17 new_cov=22/31 polymorphism_frequency=5.521e-01 polymorphism_score=122.9 prediction=polymorphism ref_cov=26/17 total_cov=49/51 RA 343 . NC_000913 579099 0 A . bias_e_value=114932 bias_p_value=0.024761 consensus_reject=FREQUENCY_CUTOFF consensus_score=163.7 fisher_strand_p_value=0.844261 frequency=5.534e-01 ks_quality_p_value=0.00445523 major_base=. major_cov=27/30 major_frequency=5.534e-01 minor_base=A minor_cov=23/23 new_cov=27/30 polymorphism_frequency=5.534e-01 polymorphism_score=236.7 prediction=polymorphism ref_cov=23/23 total_cov=50/53 RA 344 . NC_000913 579127 0 T C bias_e_value=4241360 bias_p_value=0.913762 consensus_reject=FREQUENCY_CUTOFF consensus_score=95.6 fisher_strand_p_value=0.691018 frequency=5.962e-01 ks_quality_p_value=0.889367 major_base=C major_cov=28/34 major_frequency=5.962e-01 minor_base=T minor_cov=21/21 new_cov=28/34 polymorphism_frequency=5.962e-01 polymorphism_score=99.0 prediction=polymorphism ref_cov=21/21 total_cov=49/56 RA 345 . NC_000913 579134 0 T C bias_e_value=4354060 bias_p_value=0.938041 consensus_reject=FREQUENCY_CUTOFF consensus_score=86.6 fisher_strand_p_value=0.687341 frequency=6.019e-01 ks_quality_p_value=0.97376 major_base=C major_cov=27/35 major_frequency=6.019e-01 minor_base=T minor_cov=20/21 new_cov=27/35 polymorphism_frequency=6.019e-01 polymorphism_score=108.4 prediction=polymorphism ref_cov=20/21 total_cov=48/56 RA 346 . NC_000913 579146 0 A G bias_e_value=4082240 bias_p_value=0.87948 consensus_reject=FREQUENCY_CUTOFF consensus_score=71.4 fisher_strand_p_value=0.552442 frequency=5.962e-01 ks_quality_p_value=0.99761 major_base=G major_cov=27/35 major_frequency=5.962e-01 minor_base=A minor_cov=21/21 new_cov=27/35 polymorphism_frequency=5.962e-01 polymorphism_score=107.9 prediction=polymorphism ref_cov=21/21 total_cov=48/56 RA 347 . NC_000913 579271 0 G A bias_e_value=669789 bias_p_value=0.1443 consensus_reject=FREQUENCY_CUTOFF consensus_score=53.0 fisher_strand_p_value=0.0357283 frequency=6.296e-01 ks_quality_p_value=0.913221 major_base=A major_cov=27/24 major_frequency=6.296e-01 minor_base=G minor_cov=8/22 new_cov=27/24 polymorphism_frequency=6.296e-01 polymorphism_score=87.1 prediction=polymorphism ref_cov=8/22 total_cov=35/46 RA 348 . NC_000913 579285 0 T C bias_e_value=964732 bias_p_value=0.207842 consensus_reject=FREQUENCY_CUTOFF consensus_score=88.4 fisher_strand_p_value=0.0595026 frequency=6.500e-01 ks_quality_p_value=0.885898 major_base=C major_cov=27/25 major_frequency=6.500e-01 minor_base=T minor_cov=8/20 new_cov=27/25 polymorphism_frequency=6.500e-01 polymorphism_score=66.4 prediction=polymorphism ref_cov=8/20 total_cov=35/45 RA 349 . NC_000913 579385 0 A G bias_e_value=779664 bias_p_value=0.167971 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-5.4 fisher_strand_p_value=0.0397568 frequency=4.872e-01 ks_quality_p_value=1 major_base=A major_cov=13/27 major_frequency=5.128e-01 minor_base=G minor_cov=22/16 new_cov=22/16 polymorphism_frequency=4.872e-01 polymorphism_score=111.9 prediction=polymorphism ref_cov=13/27 total_cov=35/43 RA 350 . NC_000913 579457 0 A G bias_e_value=761094 bias_p_value=0.16397 consensus_reject=FREQUENCY_CUTOFF consensus_score=19.0 fisher_strand_p_value=0.386494 frequency=5.294e-01 ks_quality_p_value=0.0996708 major_base=G major_cov=24/21 major_frequency=5.294e-01 minor_base=A minor_cov=17/23 new_cov=24/21 polymorphism_frequency=5.294e-01 polymorphism_score=113.3 prediction=polymorphism ref_cov=17/23 total_cov=41/44 RA 351 . NC_000913 579502 0 A G bias_e_value=7824.05 bias_p_value=0.00168562 consensus_reject=FREQUENCY_CUTOFF consensus_score=42.3 fisher_strand_p_value=0.831923 frequency=5.714e-01 ks_quality_p_value=0.000209903 major_base=G major_cov=25/27 major_frequency=5.714e-01 minor_base=A minor_cov=17/22 new_cov=25/27 polymorphism_frequency=5.714e-01 polymorphism_score=108.5 prediction=polymorphism ref_cov=17/22 total_cov=42/49 RA 352 . NC_000913 579540 0 T C bias_e_value=4229760 bias_p_value=0.911262 consensus_reject=FREQUENCY_CUTOFF consensus_score=18.0 fisher_strand_p_value=1 frequency=5.181e-01 ks_quality_p_value=0.609478 major_base=C major_cov=20/23 major_frequency=5.181e-01 minor_base=T minor_cov=19/21 new_cov=20/23 polymorphism_frequency=5.181e-01 polymorphism_score=110.7 prediction=polymorphism ref_cov=19/21 total_cov=39/44 RA 353 . NC_000913 579651 0 C T bias_e_value=1703280 bias_p_value=0.366955 consensus_reject=FREQUENCY_CUTOFF consensus_score=44.6 fisher_strand_p_value=0.116498 frequency=5.976e-01 ks_quality_p_value=1 major_base=T major_cov=19/30 major_frequency=5.976e-01 minor_base=C minor_cov=19/14 new_cov=19/30 polymorphism_frequency=5.976e-01 polymorphism_score=92.9 prediction=polymorphism ref_cov=19/14 total_cov=38/44 RA 354 . NC_000913 579671 0 T C bias_e_value=1358160 bias_p_value=0.292603 consensus_reject=FREQUENCY_CUTOFF consensus_score=78.7 fisher_strand_p_value=0.103036 frequency=6.250e-01 ks_quality_p_value=0.817367 major_base=C major_cov=18/32 major_frequency=6.250e-01 minor_base=T minor_cov=17/13 new_cov=18/32 polymorphism_frequency=6.250e-01 polymorphism_score=80.7 prediction=polymorphism ref_cov=17/13 total_cov=35/46 RA 355 . NC_000913 579717 0 A C bias_e_value=1457520 bias_p_value=0.314009 consensus_reject=FREQUENCY_CUTOFF consensus_score=69.1 fisher_strand_p_value=0.103986 frequency=6.000e-01 ks_quality_p_value=0.894839 major_base=C major_cov=18/27 major_frequency=6.000e-01 minor_base=A minor_cov=18/12 new_cov=18/27 polymorphism_frequency=6.000e-01 polymorphism_score=87.2 prediction=polymorphism ref_cov=18/12 total_cov=36/39 RA 356 . NC_000913 579811 0 C T bias_e_value=1416500 bias_p_value=0.305171 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-6.0 fisher_strand_p_value=0.349795 frequency=5.342e-01 ks_quality_p_value=0.255463 major_base=T major_cov=18/21 major_frequency=5.342e-01 minor_base=C minor_cov=20/14 new_cov=18/21 polymorphism_frequency=5.342e-01 polymorphism_score=107.7 prediction=polymorphism ref_cov=20/14 total_cov=38/37 RA 357 . NC_000913 580020 0 G A bias_e_value=1492660 bias_p_value=0.321578 consensus_reject=FREQUENCY_CUTOFF consensus_score=14.7 fisher_strand_p_value=0.682856 frequency=4.842e-01 ks_quality_p_value=0.140968 major_base=G major_cov=28/21 major_frequency=5.158e-01 minor_base=A minor_cov=24/22 new_cov=24/22 polymorphism_frequency=4.842e-01 polymorphism_score=129.0 prediction=polymorphism ref_cov=28/21 total_cov=52/43 RA 358 . NC_000913 580115 0 C T bias_e_value=1828790 bias_p_value=0.393995 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=1.5 fisher_strand_p_value=0.844688 frequency=5.294e-01 ks_quality_p_value=0.153188 major_base=T major_cov=28/26 major_frequency=5.294e-01 minor_base=C minor_cov=26/22 new_cov=28/26 polymorphism_frequency=5.294e-01 polymorphism_score=159.7 prediction=polymorphism ref_cov=26/22 total_cov=54/48 RA 359 . NC_000913 580119 0 A G bias_e_value=4439670 bias_p_value=0.956486 consensus_reject=FREQUENCY_CUTOFF consensus_score=16.2 fisher_strand_p_value=0.846673 frequency=5.096e-01 ks_quality_p_value=0.850254 major_base=G major_cov=28/25 major_frequency=5.096e-01 minor_base=A minor_cov=28/23 new_cov=28/25 polymorphism_frequency=5.096e-01 polymorphism_score=143.7 prediction=polymorphism ref_cov=28/23 total_cov=56/48 RA 360 . NC_000913 580120 0 C T bias_e_value=3518110 bias_p_value=0.757943 consensus_reject=FREQUENCY_CUTOFF consensus_score=14.3 fisher_strand_p_value=0.69376 frequency=5.049e-01 ks_quality_p_value=0.56325 major_base=T major_cov=27/25 major_frequency=5.049e-01 minor_base=C minor_cov=29/22 new_cov=27/25 polymorphism_frequency=5.049e-01 polymorphism_score=166.5 prediction=polymorphism ref_cov=29/22 total_cov=57/47 RA 361 . NC_000913 580302 0 C T bias_e_value=1688240 bias_p_value=0.363715 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=1.9 fisher_strand_p_value=0.409035 frequency=5.161e-01 ks_quality_p_value=0.281139 major_base=T major_cov=26/22 major_frequency=5.161e-01 minor_base=C minor_cov=20/25 new_cov=26/22 polymorphism_frequency=5.161e-01 polymorphism_score=139.7 prediction=polymorphism ref_cov=20/25 total_cov=47/47 RA 362 . NC_000913 580437 0 A C bias_e_value=2042980 bias_p_value=0.44014 consensus_reject=FREQUENCY_CUTOFF consensus_score=88.0 fisher_strand_p_value=0.185598 frequency=2.714e-01 ks_quality_p_value=0.824108 major_base=A major_cov=20/31 major_frequency=7.286e-01 minor_base=C minor_cov=11/8 new_cov=11/8 polymorphism_frequency=2.714e-01 polymorphism_score=48.7 prediction=polymorphism ref_cov=20/31 total_cov=31/40 RA 363 . NC_000913 580830 0 T A bias_e_value=4635470 bias_p_value=0.998667 consensus_reject=FREQUENCY_CUTOFF consensus_score=95.4 fisher_strand_p_value=1 frequency=4.302e-01 ks_quality_p_value=0.948816 major_base=T major_cov=31/18 major_frequency=5.698e-01 minor_base=A minor_cov=23/14 new_cov=23/14 polymorphism_frequency=4.302e-01 polymorphism_score=119.3 prediction=polymorphism ref_cov=31/18 total_cov=54/32 RA 364 . NC_000913 580831 0 G A bias_e_value=4351150 bias_p_value=0.937415 consensus_reject=FREQUENCY_CUTOFF consensus_score=86.7 fisher_strand_p_value=1 frequency=4.235e-01 ks_quality_p_value=0.66775 major_base=G major_cov=31/18 major_frequency=5.765e-01 minor_base=A minor_cov=22/14 new_cov=22/14 polymorphism_frequency=4.235e-01 polymorphism_score=95.4 prediction=polymorphism ref_cov=31/18 total_cov=54/32 RA 365 . NC_000913 581042 0 T G bias_e_value=4140640 bias_p_value=0.892061 consensus_reject=FREQUENCY_CUTOFF consensus_score=95.5 fisher_strand_p_value=0.709098 frequency=4.310e-01 ks_quality_p_value=0.808005 major_base=T major_cov=29/37 major_frequency=5.690e-01 minor_base=G minor_cov=24/26 new_cov=24/26 polymorphism_frequency=4.310e-01 polymorphism_score=172.3 prediction=polymorphism ref_cov=29/37 total_cov=53/63 RA 366 . NC_000913 581056 0 A G bias_e_value=1219220 bias_p_value=0.26267 consensus_reject=FREQUENCY_CUTOFF consensus_score=93.2 fisher_strand_p_value=1 frequency=4.107e-01 ks_quality_p_value=0.0724687 major_base=A major_cov=29/37 major_frequency=5.893e-01 minor_base=G minor_cov=21/25 new_cov=21/25 polymorphism_frequency=4.107e-01 polymorphism_score=137.0 prediction=polymorphism ref_cov=29/37 total_cov=50/62 RA 367 . NC_000913 581073 0 G A bias_e_value=4022040 bias_p_value=0.866511 consensus_reject=FREQUENCY_CUTOFF consensus_score=110.4 fisher_strand_p_value=0.847183 frequency=3.964e-01 ks_quality_p_value=0.62565 major_base=G major_cov=29/38 major_frequency=6.036e-01 minor_base=A minor_cov=20/24 new_cov=20/24 polymorphism_frequency=3.964e-01 polymorphism_score=120.3 prediction=polymorphism ref_cov=29/38 total_cov=49/62 RA 368 . NC_000913 581118 0 T C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=128.3 fisher_strand_p_value=1 frequency=3.265e-01 ks_quality_p_value=1 major_base=T major_cov=28/38 major_frequency=6.735e-01 minor_base=C minor_cov=13/19 new_cov=13/19 polymorphism_frequency=3.265e-01 polymorphism_score=80.7 prediction=polymorphism ref_cov=28/38 total_cov=41/57 RA 369 . NC_000913 581127 0 G A bias_e_value=3381450 bias_p_value=0.728501 consensus_reject=FREQUENCY_CUTOFF consensus_score=133.9 fisher_strand_p_value=0.503625 frequency=3.196e-01 ks_quality_p_value=0.716192 major_base=G major_cov=27/39 major_frequency=6.804e-01 minor_base=A minor_cov=10/21 new_cov=10/21 polymorphism_frequency=3.196e-01 polymorphism_score=74.0 prediction=polymorphism ref_cov=27/39 total_cov=37/60 RA 370 . NC_000913 581133 0 A G bias_e_value=4303050 bias_p_value=0.927051 consensus_reject=FREQUENCY_CUTOFF consensus_score=106.7 fisher_strand_p_value=0.826405 frequency=3.299e-01 ks_quality_p_value=0.77833 major_base=A major_cov=27/38 major_frequency=6.701e-01 minor_base=G minor_cov=12/20 new_cov=12/20 polymorphism_frequency=3.299e-01 polymorphism_score=94.1 prediction=polymorphism ref_cov=27/38 total_cov=39/59 RA 371 . NC_000913 581227 0 A C bias_e_value=1014760 bias_p_value=0.21862 consensus_reject=FREQUENCY_CUTOFF consensus_score=65.7 fisher_strand_p_value=0.129998 frequency=3.708e-01 ks_quality_p_value=0.433996 major_base=A major_cov=26/30 major_frequency=6.292e-01 minor_base=C minor_cov=21/12 new_cov=21/12 polymorphism_frequency=3.708e-01 polymorphism_score=80.5 prediction=polymorphism ref_cov=26/30 total_cov=47/43 RA 372 . NC_000913 631633 0 G A bias_e_value=3776750 bias_p_value=0.813666 consensus_score=228.5 fisher_strand_p_value=0.458333 frequency=1 ks_quality_p_value=0.99376 major_base=A major_cov=32/39 major_frequency=9.861e-01 minor_base=C minor_cov=1/0 new_cov=32/39 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/39 RA 373 . NC_000913 727115 0 C T bias_e_value=1133920 bias_p_value=0.244293 consensus_score=181.7 fisher_strand_p_value=0.065595 frequency=1 ks_quality_p_value=1 major_base=T major_cov=21/34 major_frequency=9.483e-01 minor_base=G minor_cov=3/0 new_cov=21/34 polymorphism_frequency=9.483e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/34 RA 374 . NC_000913 727117 0 C T bias_e_value=3683430 bias_p_value=0.79356 consensus_score=194.9 fisher_strand_p_value=0.431034 frequency=1 ks_quality_p_value=0.999395 major_base=T major_cov=24/33 major_frequency=9.828e-01 minor_base=C minor_cov=1/0 new_cov=24/33 polymorphism_frequency=9.828e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=25/34 RA 375 . NC_000913 728330 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=162.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=21/31 major_frequency=9.455e-01 minor_base=C minor_cov=1/2 new_cov=21/31 polymorphism_frequency=9.455e-01 polymorphism_score=-6.2 prediction=consensus ref_cov=1/2 total_cov=22/33 RA 376 . NC_000913 749268 0 C T bias_e_value=3746830 bias_p_value=0.807219 consensus_score=123.3 fisher_strand_p_value=0.447368 frequency=1 ks_quality_p_value=1 major_base=T major_cov=21/16 major_frequency=9.737e-01 minor_base=G minor_cov=0/1 new_cov=21/16 polymorphism_frequency=9.737e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/17 RA 377 . NC_000913 750845 0 C T bias_e_value=3757730 bias_p_value=0.809568 consensus_score=246.4 fisher_strand_p_value=0.460526 frequency=1 ks_quality_p_value=0.977794 major_base=T major_cov=34/41 major_frequency=9.868e-01 minor_base=A minor_cov=1/0 new_cov=34/41 polymorphism_frequency=9.868e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/41 RA 378 . NC_000913 750858 0 C T bias_e_value=4641460 bias_p_value=0.99996 consensus_score=252.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.991031 major_base=T major_cov=34/40 major_frequency=9.867e-01 minor_base=G minor_cov=0/1 new_cov=34/40 polymorphism_frequency=9.867e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/41 RA 379 . NC_000913 759426 0 G A bias_e_value=2153640 bias_p_value=0.463981 consensus_score=213.1 fisher_strand_p_value=0.165935 frequency=1 ks_quality_p_value=1 major_base=A major_cov=40/26 major_frequency=9.706e-01 minor_base=G minor_cov=0/2 new_cov=40/26 polymorphism_frequency=9.706e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=0/2 total_cov=40/28 RA 380 . NC_000913 759576 0 G A bias_e_value=3770100 bias_p_value=0.812233 consensus_score=285.4 fisher_strand_p_value=0.47619 frequency=1 ks_quality_p_value=0.952677 major_base=A major_cov=44/39 major_frequency=9.881e-01 minor_base=G minor_cov=0/1 new_cov=44/39 polymorphism_frequency=9.881e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=44/40 RA 381 . NC_000913 784462 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=204.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=33/32 major_frequency=9.848e-01 minor_base=G minor_cov=0/1 new_cov=33/32 polymorphism_frequency=9.848e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/33 RA 382 . NC_000913 787273 0 C T consensus_score=297.5 frequency=1 major_base=T major_cov=39/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/52 RA 383 . NC_000913 790185 0 C T consensus_score=263.7 frequency=1 major_base=T major_cov=38/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/40 RA 384 . NC_000913 793306 0 C T bias_e_value=4641650 bias_p_value=0.999999 consensus_score=340.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998493 major_base=T major_cov=41/61 major_frequency=9.808e-01 minor_base=G minor_cov=1/1 new_cov=41/61 polymorphism_frequency=9.808e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/62 RA 385 . NC_000913 797186 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=276.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=46/35 major_frequency=9.759e-01 minor_base=G minor_cov=1/1 new_cov=46/35 polymorphism_frequency=9.759e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/36 RA 386 . NC_000913 802526 0 C T bias_e_value=1764760 bias_p_value=0.3802 consensus_score=175.7 fisher_strand_p_value=0.122735 frequency=1 ks_quality_p_value=1 major_base=T major_cov=19/38 major_frequency=9.661e-01 minor_base=C minor_cov=2/0 new_cov=19/38 polymorphism_frequency=9.661e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=21/38 RA 387 . NC_000913 811317 0 C T bias_e_value=3923150 bias_p_value=0.845205 consensus_score=425.4 fisher_strand_p_value=0.498031 frequency=1 ks_quality_p_value=1 major_base=T major_cov=66/60 major_frequency=9.844e-01 minor_base=G minor_cov=2/0 new_cov=66/60 polymorphism_frequency=9.844e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/60 RA 388 . NC_000913 811721 0 T G bias_e_value=2.09181e-07 bias_p_value=4.5066e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=178.2 fisher_strand_p_value=1.27686e-15 frequency=3.043e-01 ks_quality_p_value=1 major_base=T major_cov=20/60 major_frequency=6.957e-01 minor_base=G minor_cov=35/0 new_cov=35/0 polymorphism_frequency=3.043e-01 polymorphism_score=10.8 prediction=polymorphism ref_cov=20/60 total_cov=58/61 RA 389 . NC_000913 812699 0 C T bias_e_value=2487070 bias_p_value=0.535816 consensus_score=248.5 fisher_strand_p_value=0.208772 frequency=1 ks_quality_p_value=1 major_base=T major_cov=41/33 major_frequency=9.737e-01 minor_base=G minor_cov=0/2 new_cov=41/33 polymorphism_frequency=9.737e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/35 RA 390 . NC_000913 816122 0 C T consensus_score=209.2 frequency=1 major_base=T major_cov=35/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/30 RA 391 . NC_000913 831431 0 C T bias_e_value=4641550 bias_p_value=0.999977 consensus_score=173.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.993236 major_base=T major_cov=26/25 major_frequency=9.808e-01 minor_base=C minor_cov=0/1 new_cov=26/25 polymorphism_frequency=9.808e-01 polymorphism_score=-6.3 prediction=consensus ref_cov=0/1 total_cov=26/26 RA 392 . NC_000913 850617 0 C T consensus_score=176.2 frequency=1 major_base=T major_cov=28/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/28 RA 393 . NC_000913 869690 0 G A consensus_score=134.5 frequency=1 major_base=A major_cov=18/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/23 RA 394 . NC_000913 874129 0 C T bias_e_value=3757520 bias_p_value=0.809521 consensus_score=141.2 fisher_strand_p_value=0.454545 frequency=1 ks_quality_p_value=0.990531 major_base=T major_cov=19/24 major_frequency=9.773e-01 minor_base=A minor_cov=1/0 new_cov=19/24 polymorphism_frequency=9.773e-01 polymorphism_score=-6.7 prediction=consensus ref_cov=0/0 total_cov=20/24 RA 395 . NC_000913 884712 0 G A bias_e_value=4641600 bias_p_value=0.999988 consensus_score=128.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.995134 major_base=A major_cov=17/23 major_frequency=9.756e-01 minor_base=G minor_cov=0/1 new_cov=17/23 polymorphism_frequency=9.756e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=17/24 RA 396 . NC_000913 885116 0 G A consensus_score=175.8 frequency=1 major_base=A major_cov=26/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/25 RA 397 . NC_000913 889829 0 C T consensus_score=142.9 frequency=1 major_base=T major_cov=26/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/17 RA 398 . NC_000913 890342 0 C T consensus_score=123.9 frequency=1 major_base=T major_cov=23/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/14 RA 399 . NC_000913 891909 0 C T bias_e_value=3850220 bias_p_value=0.829494 consensus_score=195.0 fisher_strand_p_value=0.47619 frequency=1 ks_quality_p_value=1 major_base=T major_cov=33/29 major_frequency=9.841e-01 minor_base=G minor_cov=0/1 new_cov=33/29 polymorphism_frequency=9.841e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/30 RA 400 . NC_000913 896433 0 C T consensus_score=231.9 frequency=1 major_base=T major_cov=30/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/39 RA 401 . NC_000913 904702 0 C T consensus_score=198.8 frequency=1 major_base=T major_cov=36/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/23 RA 402 . NC_000913 908889 0 C T bias_e_value=3905750 bias_p_value=0.841456 consensus_score=198.6 fisher_strand_p_value=0.492694 frequency=1 ks_quality_p_value=1 major_base=T major_cov=28/29 major_frequency=9.661e-01 minor_base=G minor_cov=0/2 new_cov=28/29 polymorphism_frequency=9.661e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/31 RA 403 . NC_000913 910080 0 C T consensus_score=202.3 frequency=1 major_base=T major_cov=34/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/26 RA 404 . NC_000913 915852 0 C T consensus_score=206.9 frequency=1 major_base=T major_cov=26/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/35 RA 405 . NC_000913 917753 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=207.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=34/30 major_frequency=9.846e-01 minor_base=A minor_cov=1/0 new_cov=34/30 polymorphism_frequency=9.846e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/30 RA 406 . NC_000913 921399 0 C T consensus_score=168.5 frequency=1 major_base=T major_cov=24/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/29 RA 407 . NC_000913 921756 0 C T consensus_score=151.8 frequency=1 major_base=T major_cov=25/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/22 RA 408 . NC_000913 937458 0 C T bias_e_value=4641190 bias_p_value=0.9999 consensus_score=151.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.985916 major_base=T major_cov=30/17 major_frequency=9.792e-01 minor_base=G minor_cov=1/0 new_cov=30/17 polymorphism_frequency=9.792e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/17 RA 409 . NC_000913 943967 0 C T consensus_score=222.1 frequency=1 major_base=T major_cov=33/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/36 RA 410 . NC_000913 969683 0 C T consensus_score=192.8 frequency=1 major_base=T major_cov=28/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/29 RA 411 . NC_000913 972831 0 G A consensus_score=184.5 frequency=1 major_base=A major_cov=22/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/33 RA 412 . NC_000913 987152 0 G T consensus_score=63.0 frequency=1 major_base=T major_cov=6/13 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=6/13 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=6/13 RA 413 . NC_000913 1041693 0 C T consensus_score=162.0 frequency=1 major_base=T major_cov=20/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/30 RA 414 . NC_000913 1057826 0 C T consensus_score=196.7 frequency=1 major_base=T major_cov=29/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/30 RA 415 . NC_000913 1069024 0 C T bias_e_value=3543170 bias_p_value=0.763342 consensus_score=174.7 fisher_strand_p_value=0.396552 frequency=1 ks_quality_p_value=1 major_base=T major_cov=35/22 major_frequency=9.828e-01 minor_base=C minor_cov=0/1 new_cov=35/22 polymorphism_frequency=9.828e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=35/23 RA 416 . NC_000913 1072484 0 C T bias_e_value=3863270 bias_p_value=0.832305 consensus_score=165.4 fisher_strand_p_value=0.48 frequency=1 ks_quality_p_value=1 major_base=T major_cov=26/23 major_frequency=9.800e-01 minor_base=C minor_cov=0/1 new_cov=26/23 polymorphism_frequency=9.800e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=26/25 RA 417 . NC_000913 1076800 0 C T bias_e_value=3745280 bias_p_value=0.806884 consensus_score=207.6 fisher_strand_p_value=0.447761 frequency=1 ks_quality_p_value=0.998192 major_base=T major_cov=29/37 major_frequency=9.851e-01 minor_base=A minor_cov=1/0 new_cov=29/37 polymorphism_frequency=9.851e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/37 RA 418 . NC_000913 1077916 0 C T bias_e_value=3863270 bias_p_value=0.832305 consensus_score=242.4 fisher_strand_p_value=0.48 frequency=1 ks_quality_p_value=1 major_base=T major_cov=35/39 major_frequency=9.867e-01 minor_base=C minor_cov=1/0 new_cov=35/39 polymorphism_frequency=9.867e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=36/39 RA 419 . NC_000913 1078308 0 C T consensus_score=262.2 frequency=1 major_base=T major_cov=30/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/46 RA 420 . NC_000913 1086382 0 C T bias_e_value=3649600 bias_p_value=0.786272 consensus_score=145.8 fisher_strand_p_value=0.422222 frequency=1 ks_quality_p_value=1 major_base=T major_cov=18/26 major_frequency=9.778e-01 minor_base=G minor_cov=1/0 new_cov=18/26 polymorphism_frequency=9.778e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/26 RA 421 . NC_000913 1095379 0 C T bias_e_value=4460110 bias_p_value=0.960889 consensus_score=94.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.733684 major_base=T major_cov=14/16 major_frequency=9.677e-01 minor_base=C minor_cov=0/1 new_cov=14/16 polymorphism_frequency=9.677e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=0/1 total_cov=14/17 RA 422 . NC_000913 1098239 0 C T consensus_score=156.2 frequency=1 major_base=T major_cov=20/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/26 RA 423 . NC_000913 1111819 0 C T bias_e_value=3762590 bias_p_value=0.810613 consensus_score=205.7 fisher_strand_p_value=0.451613 frequency=1 ks_quality_p_value=1 major_base=T major_cov=34/27 major_frequency=9.839e-01 minor_base=G minor_cov=0/1 new_cov=34/27 polymorphism_frequency=9.839e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/28 RA 424 . NC_000913 1115639 0 C T consensus_score=109.5 frequency=1 major_base=T major_cov=16/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/17 RA 425 . NC_000913 1116975 0 C T bias_e_value=4641000 bias_p_value=0.999859 consensus_score=140.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.983229 major_base=T major_cov=25/18 major_frequency=9.773e-01 minor_base=G minor_cov=1/0 new_cov=25/18 polymorphism_frequency=9.773e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/18 RA 426 . NC_000913 1121634 0 C T bias_e_value=3455270 bias_p_value=0.744406 consensus_score=119.9 fisher_strand_p_value=0.447368 frequency=1 ks_quality_p_value=0.841879 major_base=T major_cov=21/16 major_frequency=9.737e-01 minor_base=C minor_cov=0/1 new_cov=21/16 polymorphism_frequency=9.737e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=0/1 total_cov=21/18 RA 427 . NC_000913 1125203 0 C T consensus_score=161.6 frequency=1 major_base=T major_cov=21/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/30 RA 428 . NC_000913 1125597 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=168.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=26/24 major_frequency=9.804e-01 minor_base=C minor_cov=1/0 new_cov=26/24 polymorphism_frequency=9.804e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=28/24 RA 429 . NC_000913 1128392 0 C T bias_e_value=4630800 bias_p_value=0.997663 consensus_score=229.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.932413 major_base=T major_cov=30/39 major_frequency=9.857e-01 minor_base=G minor_cov=0/1 new_cov=30/39 polymorphism_frequency=9.857e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=0/0 total_cov=30/40 RA 430 . NC_000913 1134882 0 C T consensus_score=160.4 frequency=1 major_base=T major_cov=29/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/18 RA 431 . NC_000913 1135255 0 C T bias_e_value=3775850 bias_p_value=0.813472 consensus_score=236.1 fisher_strand_p_value=0.459459 frequency=1 ks_quality_p_value=0.990787 major_base=T major_cov=40/33 major_frequency=9.865e-01 minor_base=G minor_cov=0/1 new_cov=40/33 polymorphism_frequency=9.865e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/34 RA 432 . NC_000913 1135448 0 C T consensus_score=230.3 frequency=1 major_base=T major_cov=32/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/37 RA 433 . NC_000913 1164563 0 G A bias_e_value=3735870 bias_p_value=0.804858 consensus_score=206.9 fisher_strand_p_value=0.444444 frequency=1 ks_quality_p_value=1 major_base=A major_cov=35/27 major_frequency=9.841e-01 minor_base=C minor_cov=0/1 new_cov=35/27 polymorphism_frequency=9.841e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/28 RA 434 . NC_000913 1167940 0 C T bias_e_value=4633940 bias_p_value=0.998339 consensus_score=155.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.942913 major_base=T major_cov=27/25 major_frequency=9.811e-01 minor_base=C minor_cov=1/0 new_cov=27/25 polymorphism_frequency=9.811e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=28/25 RA 435 . NC_000913 1174626 0 G A bias_e_value=40.5599 bias_p_value=8.73825e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=78.2 fisher_strand_p_value=6.62982e-07 frequency=2.917e-01 ks_quality_p_value=0.856919 major_base=G major_cov=26/8 major_frequency=7.083e-01 minor_base=A minor_cov=0/14 new_cov=0/14 polymorphism_frequency=2.917e-01 polymorphism_score=13.9 prediction=polymorphism ref_cov=26/8 total_cov=26/22 RA 436 . NC_000913 1196220 0 C T consensus_score=43.8 frequency=1 major_base=T major_cov=7/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/9 RA 437 . NC_000913 1196232 0 C T consensus_score=37.0 frequency=1 major_base=T major_cov=7/7 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/7 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/7 RA 438 . NC_000913 1196245 0 T C consensus_score=32.6 frequency=1 major_base=C major_cov=6/6 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=6/6 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=6/6 RA 439 . NC_000913 1196247 0 A G consensus_score=22.4 frequency=1 major_base=G major_cov=5/6 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=5/6 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=5/6 RA 440 . NC_000913 1196277 0 C T consensus_score=11.1 deleted=1 frequency=1 major_base=T major_cov=4/3 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=4/3 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=4/3 RA 441 . NC_000913 1196280 0 G C consensus_score=13.7 deleted=1 frequency=1 major_base=C major_cov=4/3 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=4/3 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=4/3 RA 442 . NC_000913 1196283 0 A G consensus_score=13.1 deleted=1 frequency=1 major_base=G major_cov=4/3 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=4/3 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=4/3 RA 443 . NC_000913 1196292 0 C T consensus_score=13.2 deleted=1 frequency=1 major_base=T major_cov=4/3 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=4/3 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=4/3 RA 444 . NC_000913 1255644 0 G A consensus_score=108.9 frequency=1 major_base=A major_cov=12/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/21 RA 445 . NC_000913 1290881 0 C T consensus_score=88.6 frequency=1 major_base=T major_cov=17/10 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=17/10 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/10 RA 446 . NC_000913 1337394 0 A G bias_e_value=3847010 bias_p_value=0.828802 consensus_score=148.8 fisher_strand_p_value=0.477273 frequency=1 ks_quality_p_value=0.995781 major_base=G major_cov=20/23 major_frequency=9.773e-01 minor_base=A minor_cov=1/0 new_cov=20/23 polymorphism_frequency=9.773e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=21/23 RA 447 . NC_000913 1353758 0 T A bias_e_value=4641520 bias_p_value=0.999971 consensus_score=223.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.992337 major_base=A major_cov=39/25 major_frequency=9.846e-01 minor_base=C minor_cov=1/0 new_cov=39/25 polymorphism_frequency=9.846e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/25 RA 448 . NC_000913 1423272 0 C T bias_e_value=493367 bias_p_value=0.106291 consensus_reject=FREQUENCY_CUTOFF consensus_score=187.2 fisher_strand_p_value=0.475299 frequency=2.609e-01 ks_quality_p_value=0.0464651 major_base=C major_cov=33/35 major_frequency=7.391e-01 minor_base=T minor_cov=9/15 new_cov=9/15 polymorphism_frequency=2.609e-01 polymorphism_score=57.9 prediction=polymorphism ref_cov=33/35 total_cov=42/50 RA 449 . NC_000913 1423273 0 G A bias_e_value=3456270 bias_p_value=0.744621 consensus_reject=FREQUENCY_CUTOFF consensus_score=192.9 fisher_strand_p_value=0.475299 frequency=2.609e-01 ks_quality_p_value=0.792869 major_base=G major_cov=33/35 major_frequency=7.391e-01 minor_base=A minor_cov=9/15 new_cov=9/15 polymorphism_frequency=2.609e-01 polymorphism_score=50.5 prediction=polymorphism ref_cov=33/35 total_cov=42/50 RA 450 . NC_000913 1423283 0 A C bias_e_value=3331880 bias_p_value=0.717822 consensus_reject=FREQUENCY_CUTOFF consensus_score=194.5 fisher_strand_p_value=0.350366 frequency=2.637e-01 ks_quality_p_value=1 major_base=A major_cov=33/34 major_frequency=7.363e-01 minor_base=C minor_cov=9/15 new_cov=9/15 polymorphism_frequency=2.637e-01 polymorphism_score=63.4 prediction=polymorphism ref_cov=33/34 total_cov=42/49 RA 451 . NC_000913 1423284 0 A C bias_e_value=2019010 bias_p_value=0.434976 consensus_reject=FREQUENCY_CUTOFF consensus_score=201.8 fisher_strand_p_value=0.234465 frequency=2.527e-01 ks_quality_p_value=0.640672 major_base=A major_cov=34/34 major_frequency=7.473e-01 minor_base=C minor_cov=8/15 new_cov=8/15 polymorphism_frequency=2.527e-01 polymorphism_score=57.4 prediction=polymorphism ref_cov=34/34 total_cov=42/49 RA 452 . NC_000913 1423338 0 G C bias_e_value=2585290 bias_p_value=0.556977 consensus_reject=FREQUENCY_CUTOFF consensus_score=219.4 fisher_strand_p_value=0.655116 frequency=2.857e-01 ks_quality_p_value=0.339734 major_base=G major_cov=35/35 major_frequency=7.143e-01 minor_base=C minor_cov=12/16 new_cov=12/16 polymorphism_frequency=2.857e-01 polymorphism_score=99.0 prediction=polymorphism ref_cov=35/35 total_cov=47/52 RA 453 . NC_000913 1423404 0 G T bias_e_value=1587550 bias_p_value=0.342023 consensus_reject=FREQUENCY_CUTOFF consensus_score=184.9 fisher_strand_p_value=1 frequency=2.913e-01 ks_quality_p_value=0.105166 major_base=G major_cov=31/42 major_frequency=7.087e-01 minor_base=T minor_cov=12/18 new_cov=12/18 polymorphism_frequency=2.913e-01 polymorphism_score=79.6 prediction=polymorphism ref_cov=31/42 total_cov=43/60 RA 454 . NC_000913 1428925 0 C T bias_e_value=3121480 bias_p_value=0.672493 consensus_reject=FREQUENCY_CUTOFF consensus_score=143.3 fisher_strand_p_value=0.30951 frequency=2.532e-01 ks_quality_p_value=1 major_base=C major_cov=27/32 major_frequency=7.468e-01 minor_base=T minor_cov=12/8 new_cov=12/8 polymorphism_frequency=2.532e-01 polymorphism_score=36.9 prediction=polymorphism ref_cov=27/32 total_cov=39/41 RA 455 . NC_000913 1428945 0 C T bias_e_value=1988790 bias_p_value=0.428466 consensus_reject=FREQUENCY_CUTOFF consensus_score=134.9 fisher_strand_p_value=0.170966 frequency=3.000e-01 ks_quality_p_value=0.858661 major_base=C major_cov=29/34 major_frequency=7.000e-01 minor_base=T minor_cov=17/10 new_cov=17/10 polymorphism_frequency=3.000e-01 polymorphism_score=57.8 prediction=polymorphism ref_cov=29/34 total_cov=47/44 RA 456 . NC_000913 1428954 0 T A bias_e_value=3143290 bias_p_value=0.677192 consensus_reject=FREQUENCY_CUTOFF consensus_score=127.5 fisher_strand_p_value=0.369595 frequency=3.187e-01 ks_quality_p_value=0.848334 major_base=T major_cov=29/33 major_frequency=6.813e-01 minor_base=A minor_cov=17/12 new_cov=17/12 polymorphism_frequency=3.187e-01 polymorphism_score=79.4 prediction=polymorphism ref_cov=29/33 total_cov=48/45 RA 457 . NC_000913 1428963 0 G T bias_e_value=707261 bias_p_value=0.152373 consensus_reject=FREQUENCY_CUTOFF consensus_score=91.5 fisher_strand_p_value=0.118952 frequency=3.409e-01 ks_quality_p_value=0.294334 major_base=G major_cov=26/32 major_frequency=6.591e-01 minor_base=T minor_cov=19/11 new_cov=19/11 polymorphism_frequency=3.409e-01 polymorphism_score=80.1 prediction=polymorphism ref_cov=26/32 total_cov=45/44 RA 458 . NC_000913 1428966 0 T G bias_e_value=1705810 bias_p_value=0.367501 consensus_reject=FREQUENCY_CUTOFF consensus_score=68.4 fisher_strand_p_value=0.181684 frequency=3.678e-01 ks_quality_p_value=0.642611 major_base=T major_cov=25/30 major_frequency=6.322e-01 minor_base=G minor_cov=20/12 new_cov=20/12 polymorphism_frequency=3.678e-01 polymorphism_score=77.2 prediction=polymorphism ref_cov=25/30 total_cov=45/42 RA 459 . NC_000913 1428978 0 G A bias_e_value=927216 bias_p_value=0.19976 consensus_reject=FREQUENCY_CUTOFF consensus_score=85.0 fisher_strand_p_value=0.138073 frequency=3.846e-01 ks_quality_p_value=0.362064 major_base=G major_cov=26/30 major_frequency=6.154e-01 minor_base=A minor_cov=22/13 new_cov=22/13 polymorphism_frequency=3.846e-01 polymorphism_score=92.9 prediction=polymorphism ref_cov=26/30 total_cov=49/43 RA 460 . NC_000913 1429021 0 T A bias_e_value=951000 bias_p_value=0.204884 consensus_reject=FREQUENCY_CUTOFF consensus_score=26.2 fisher_strand_p_value=0.147822 frequency=4.526e-01 ks_quality_p_value=0.349821 major_base=T major_cov=24/28 major_frequency=5.474e-01 minor_base=A minor_cov=27/16 new_cov=27/16 polymorphism_frequency=4.526e-01 polymorphism_score=138.8 prediction=polymorphism ref_cov=24/28 total_cov=51/44 RA 461 . NC_000913 1429022 0 T A bias_e_value=1857590 bias_p_value=0.4002 consensus_reject=FREQUENCY_CUTOFF consensus_score=40.0 fisher_strand_p_value=0.147822 frequency=4.526e-01 ks_quality_p_value=0.895995 major_base=T major_cov=24/28 major_frequency=5.474e-01 minor_base=A minor_cov=27/16 new_cov=27/16 polymorphism_frequency=4.526e-01 polymorphism_score=125.4 prediction=polymorphism ref_cov=24/28 total_cov=51/44 RA 462 . NC_000913 1429024 0 A C bias_e_value=1943310 bias_p_value=0.418667 consensus_reject=FREQUENCY_CUTOFF consensus_score=34.7 fisher_strand_p_value=0.144386 frequency=4.624e-01 ks_quality_p_value=0.981675 major_base=A major_cov=23/27 major_frequency=5.376e-01 minor_base=C minor_cov=27/16 new_cov=27/16 polymorphism_frequency=4.624e-01 polymorphism_score=121.8 prediction=polymorphism ref_cov=23/27 total_cov=50/43 RA 463 . NC_000913 1429027 0 C T bias_e_value=1671560 bias_p_value=0.360121 consensus_reject=FREQUENCY_CUTOFF consensus_score=39.9 fisher_strand_p_value=0.205923 frequency=4.505e-01 ks_quality_p_value=0.550397 major_base=C major_cov=23/27 major_frequency=5.495e-01 minor_base=T minor_cov=25/16 new_cov=25/16 polymorphism_frequency=4.505e-01 polymorphism_score=103.1 prediction=polymorphism ref_cov=23/27 total_cov=50/43 RA 464 . NC_000913 1429069 0 T A bias_e_value=1200840 bias_p_value=0.25871 consensus_reject=FREQUENCY_CUTOFF consensus_score=75.5 fisher_strand_p_value=0.0726765 frequency=5.865e-01 ks_quality_p_value=0.976461 major_base=A major_cov=36/25 major_frequency=5.865e-01 minor_base=T minor_cov=17/26 new_cov=36/25 polymorphism_frequency=5.865e-01 polymorphism_score=119.0 prediction=polymorphism ref_cov=17/26 total_cov=55/51 RA 465 . NC_000913 1429072 0 A C bias_e_value=2769050 bias_p_value=0.596566 consensus_reject=FREQUENCY_CUTOFF consensus_score=66.4 fisher_strand_p_value=0.249994 frequency=5.545e-01 ks_quality_p_value=1 major_base=C major_cov=36/25 major_frequency=5.545e-01 minor_base=A minor_cov=23/26 new_cov=36/25 polymorphism_frequency=5.545e-01 polymorphism_score=119.5 prediction=polymorphism ref_cov=23/26 total_cov=59/51 RA 466 . NC_000913 1429111 0 A C bias_e_value=2548130 bias_p_value=0.548971 consensus_reject=FREQUENCY_CUTOFF consensus_score=98.1 fisher_strand_p_value=0.72714 frequency=5.896e-01 ks_quality_p_value=0.298813 major_base=C major_cov=43/36 major_frequency=5.896e-01 minor_base=A minor_cov=28/27 new_cov=43/36 polymorphism_frequency=5.896e-01 polymorphism_score=161.3 prediction=polymorphism ref_cov=28/27 total_cov=71/63 RA 467 . NC_000913 1429114 0 C T bias_e_value=4430630 bias_p_value=0.954537 consensus_reject=FREQUENCY_CUTOFF consensus_score=29.2 fisher_strand_p_value=1 frequency=5.563e-01 ks_quality_p_value=0.714029 major_base=T major_cov=43/36 major_frequency=5.563e-01 minor_base=C minor_cov=35/28 new_cov=43/36 polymorphism_frequency=5.563e-01 polymorphism_score=184.5 prediction=polymorphism ref_cov=35/28 total_cov=78/64 RA 468 . NC_000913 1429126 0 A C bias_e_value=1528930 bias_p_value=0.329393 consensus_reject=FREQUENCY_CUTOFF consensus_score=69.8 fisher_strand_p_value=1 frequency=5.743e-01 ks_quality_p_value=0.0996245 major_base=C major_cov=47/38 major_frequency=5.743e-01 minor_base=A minor_cov=35/28 new_cov=47/38 polymorphism_frequency=5.743e-01 polymorphism_score=191.0 prediction=polymorphism ref_cov=35/28 total_cov=82/66 RA 469 . NC_000913 1429128 0 A G bias_e_value=758213 bias_p_value=0.16335 consensus_reject=FREQUENCY_CUTOFF consensus_score=51.3 fisher_strand_p_value=0.867767 frequency=5.608e-01 ks_quality_p_value=0.0441728 major_base=G major_cov=45/38 major_frequency=5.608e-01 minor_base=A minor_cov=37/28 new_cov=45/38 polymorphism_frequency=5.608e-01 polymorphism_score=177.6 prediction=polymorphism ref_cov=37/28 total_cov=82/66 RA 470 . NC_000913 1429160 0 C G bias_e_value=2749120 bias_p_value=0.592272 consensus_reject=FREQUENCY_CUTOFF consensus_score=63.3 fisher_strand_p_value=0.517384 frequency=5.359e-01 ks_quality_p_value=0.477229 major_base=G major_cov=44/38 major_frequency=5.359e-01 minor_base=C minor_cov=42/29 new_cov=44/38 polymorphism_frequency=5.359e-01 polymorphism_score=241.4 prediction=polymorphism ref_cov=42/29 total_cov=86/68 RA 471 . NC_000913 1429164 0 C G bias_e_value=3315510 bias_p_value=0.714295 consensus_reject=FREQUENCY_CUTOFF consensus_score=18.4 fisher_strand_p_value=0.741737 frequency=5.270e-01 ks_quality_p_value=0.467845 major_base=G major_cov=42/36 major_frequency=5.270e-01 minor_base=C minor_cov=40/30 new_cov=42/36 polymorphism_frequency=5.270e-01 polymorphism_score=250.6 prediction=polymorphism ref_cov=40/30 total_cov=84/66 RA 472 . NC_000913 1429171 0 A G bias_e_value=3887530 bias_p_value=0.837531 consensus_reject=FREQUENCY_CUTOFF consensus_score=51.9 fisher_strand_p_value=0.625159 frequency=5.298e-01 ks_quality_p_value=0.779311 major_base=G major_cov=44/36 major_frequency=5.298e-01 minor_base=A minor_cov=42/29 new_cov=44/36 polymorphism_frequency=5.298e-01 polymorphism_score=206.8 prediction=polymorphism ref_cov=42/29 total_cov=87/65 RA 473 . NC_000913 1429204 0 C T bias_e_value=3825030 bias_p_value=0.824067 consensus_reject=FREQUENCY_CUTOFF consensus_score=13.6 fisher_strand_p_value=0.526816 frequency=5.125e-01 ks_quality_p_value=0.89016 major_base=T major_cov=44/38 major_frequency=5.125e-01 minor_base=C minor_cov=46/32 new_cov=44/38 polymorphism_frequency=5.125e-01 polymorphism_score=212.6 prediction=polymorphism ref_cov=46/32 total_cov=91/70 RA 474 . NC_000913 1429207 0 T G bias_e_value=3680830 bias_p_value=0.793 consensus_reject=FREQUENCY_CUTOFF consensus_score=51.7 fisher_strand_p_value=0.430111 frequency=5.062e-01 ks_quality_p_value=1 major_base=G major_cov=43/38 major_frequency=5.062e-01 minor_base=T minor_cov=47/32 new_cov=43/38 polymorphism_frequency=5.062e-01 polymorphism_score=214.9 prediction=polymorphism ref_cov=47/32 total_cov=91/71 RA 475 . NC_000913 1429225 0 C T bias_e_value=1658.05 bias_p_value=0.000357212 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=6.0 fisher_strand_p_value=0.2593 frequency=4.744e-01 ks_quality_p_value=0.000121183 major_base=C major_cov=50/32 major_frequency=5.256e-01 minor_base=T minor_cov=38/36 new_cov=38/36 polymorphism_frequency=4.744e-01 polymorphism_score=210.9 prediction=polymorphism ref_cov=50/32 total_cov=88/69 RA 476 . NC_000913 1429228 0 T C bias_e_value=1488.95 bias_p_value=0.00032078 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=9.5 fisher_strand_p_value=0.42137 frequency=4.744e-01 ks_quality_p_value=6.62795e-05 major_base=T major_cov=48/34 major_frequency=5.256e-01 minor_base=C minor_cov=38/36 new_cov=38/36 polymorphism_frequency=4.744e-01 polymorphism_score=236.1 prediction=polymorphism ref_cov=48/34 total_cov=87/70 RA 477 . NC_000913 1429231 0 T C bias_e_value=213388 bias_p_value=0.0459725 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-3.9 fisher_strand_p_value=0.26191 frequency=4.747e-01 ks_quality_p_value=0.0300286 major_base=T major_cov=51/32 major_frequency=5.253e-01 minor_base=C minor_cov=39/36 new_cov=39/36 polymorphism_frequency=4.747e-01 polymorphism_score=228.4 prediction=polymorphism ref_cov=51/32 total_cov=90/68 RA 478 . NC_000913 1429235 0 T C bias_e_value=28696.9 bias_p_value=0.00618248 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-5.4 fisher_strand_p_value=0.26191 frequency=4.747e-01 ks_quality_p_value=0.00288264 major_base=T major_cov=51/32 major_frequency=5.253e-01 minor_base=C minor_cov=39/36 new_cov=39/36 polymorphism_frequency=4.747e-01 polymorphism_score=242.5 prediction=polymorphism ref_cov=51/32 total_cov=90/68 RA 479 . NC_000913 1429236 0 T A bias_e_value=1884540 bias_p_value=0.406007 consensus_reject=FREQUENCY_CUTOFF consensus_score=30.4 fisher_strand_p_value=0.135336 frequency=5.000e-01 ks_quality_p_value=1 major_base=A major_cov=39/36 major_frequency=5.000e-01 minor_base=T minor_cov=49/26 new_cov=39/36 polymorphism_frequency=5.000e-01 polymorphism_score=229.3 prediction=polymorphism ref_cov=49/26 total_cov=88/67 RA 480 . NC_000913 1429240 0 G T bias_e_value=123253 bias_p_value=0.0265537 consensus_reject=FREQUENCY_CUTOFF consensus_score=19.3 fisher_strand_p_value=0.260434 frequency=4.839e-01 ks_quality_p_value=0.0156849 major_base=G major_cov=49/31 major_frequency=5.161e-01 minor_base=T minor_cov=39/36 new_cov=39/36 polymorphism_frequency=4.839e-01 polymorphism_score=218.5 prediction=polymorphism ref_cov=49/31 total_cov=88/67 RA 481 . NC_000913 1429243 0 A C bias_e_value=101698 bias_p_value=0.0219098 consensus_reject=FREQUENCY_CUTOFF consensus_score=10.0 fisher_strand_p_value=0.336326 frequency=4.717e-01 ks_quality_p_value=0.00968411 major_base=A major_cov=51/33 major_frequency=5.283e-01 minor_base=C minor_cov=39/36 new_cov=39/36 polymorphism_frequency=4.717e-01 polymorphism_score=246.0 prediction=polymorphism ref_cov=51/33 total_cov=90/69 RA 482 . NC_000913 1429246 0 A T bias_e_value=74409 bias_p_value=0.0160307 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-4.2 fisher_strand_p_value=0.20037 frequency=4.684e-01 ks_quality_p_value=0.0112807 major_base=A major_cov=52/32 major_frequency=5.316e-01 minor_base=T minor_cov=38/36 new_cov=38/36 polymorphism_frequency=4.684e-01 polymorphism_score=256.2 prediction=polymorphism ref_cov=52/32 total_cov=91/69 RA 483 . NC_000913 1429249 0 C T bias_e_value=471727 bias_p_value=0.101629 consensus_reject=FREQUENCY_CUTOFF consensus_score=16.3 fisher_strand_p_value=0.329267 frequency=4.774e-01 ks_quality_p_value=0.0633862 major_base=C major_cov=50/31 major_frequency=5.226e-01 minor_base=T minor_cov=39/35 new_cov=39/35 polymorphism_frequency=4.774e-01 polymorphism_score=211.6 prediction=polymorphism ref_cov=50/31 total_cov=89/68 RA 484 . NC_000913 1429252 0 G A bias_e_value=1435.07 bias_p_value=0.000309173 consensus_reject=FREQUENCY_CUTOFF consensus_score=50.9 fisher_strand_p_value=0.42003 frequency=4.713e-01 ks_quality_p_value=6.38608e-05 major_base=G major_cov=50/33 major_frequency=5.287e-01 minor_base=A minor_cov=39/35 new_cov=39/35 polymorphism_frequency=4.713e-01 polymorphism_score=199.3 prediction=polymorphism ref_cov=50/33 total_cov=89/68 RA 485 . NC_000913 1429255 0 G A bias_e_value=26323.8 bias_p_value=0.00567122 consensus_reject=FREQUENCY_CUTOFF consensus_score=38.0 fisher_strand_p_value=0.264754 frequency=4.777e-01 ks_quality_p_value=0.00258485 major_base=G major_cov=50/32 major_frequency=5.223e-01 minor_base=A minor_cov=39/36 new_cov=39/36 polymorphism_frequency=4.777e-01 polymorphism_score=214.6 prediction=polymorphism ref_cov=50/32 total_cov=89/68 RA 486 . NC_000913 1429258 0 A G bias_e_value=2780820 bias_p_value=0.599102 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=1.0 fisher_strand_p_value=0.254627 frequency=4.870e-01 ks_quality_p_value=0.989011 major_base=A major_cov=49/30 major_frequency=5.130e-01 minor_base=G minor_cov=39/36 new_cov=39/36 polymorphism_frequency=4.870e-01 polymorphism_score=227.5 prediction=polymorphism ref_cov=49/30 total_cov=88/66 RA 487 . NC_000913 1429261 0 T C bias_e_value=2676100 bias_p_value=0.57654 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=0.1 fisher_strand_p_value=0.258593 frequency=4.903e-01 ks_quality_p_value=0.912026 major_base=T major_cov=49/30 major_frequency=5.097e-01 minor_base=C minor_cov=40/36 new_cov=40/36 polymorphism_frequency=4.903e-01 polymorphism_score=228.6 prediction=polymorphism ref_cov=49/30 total_cov=89/66 RA 488 . NC_000913 1429273 0 T C bias_e_value=1541140 bias_p_value=0.332023 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=0.0 fisher_strand_p_value=0.197794 frequency=4.839e-01 ks_quality_p_value=0.509458 major_base=T major_cov=50/30 major_frequency=5.161e-01 minor_base=C minor_cov=39/36 new_cov=39/36 polymorphism_frequency=4.839e-01 polymorphism_score=228.2 prediction=polymorphism ref_cov=50/30 total_cov=89/66 RA 489 . NC_000913 1429291 0 T A bias_e_value=2404760 bias_p_value=0.518082 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=9.6 fisher_strand_p_value=0.197644 frequency=4.968e-01 ks_quality_p_value=1 major_base=T major_cov=50/29 major_frequency=5.032e-01 minor_base=A minor_cov=41/37 new_cov=41/37 polymorphism_frequency=4.968e-01 polymorphism_score=257.2 prediction=polymorphism ref_cov=50/29 total_cov=91/66 RA 490 . NC_000913 1429297 0 C G bias_e_value=852980 bias_p_value=0.183767 consensus_reject=FREQUENCY_CUTOFF consensus_score=37.1 fisher_strand_p_value=0.145731 frequency=4.679e-01 ks_quality_p_value=0.307059 major_base=C major_cov=54/29 major_frequency=5.321e-01 minor_base=G minor_cov=39/34 new_cov=39/34 polymorphism_frequency=4.679e-01 polymorphism_score=284.3 prediction=polymorphism ref_cov=54/29 total_cov=93/63 RA 491 . NC_000913 1429300 0 T G bias_e_value=1023520 bias_p_value=0.220508 consensus_reject=FREQUENCY_CUTOFF consensus_score=45.3 fisher_strand_p_value=0.139934 frequency=4.710e-01 ks_quality_p_value=0.407885 major_base=T major_cov=54/28 major_frequency=5.290e-01 minor_base=G minor_cov=39/34 new_cov=39/34 polymorphism_frequency=4.710e-01 polymorphism_score=202.3 prediction=polymorphism ref_cov=54/28 total_cov=93/62 RA 492 . NC_000913 1429319 0 G T bias_e_value=2398140 bias_p_value=0.516657 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=5.4 fisher_strand_p_value=0.196766 frequency=5.127e-01 ks_quality_p_value=1 major_base=T major_cov=44/37 major_frequency=5.127e-01 minor_base=G minor_cov=50/27 new_cov=44/37 polymorphism_frequency=5.127e-01 polymorphism_score=247.4 prediction=polymorphism ref_cov=50/27 total_cov=95/64 RA 493 . NC_000913 1429345 0 T G bias_e_value=1102450 bias_p_value=0.237512 consensus_reject=FREQUENCY_CUTOFF consensus_score=17.9 fisher_strand_p_value=0.160683 frequency=5.202e-01 ks_quality_p_value=0.392845 major_base=G major_cov=51/39 major_frequency=5.202e-01 minor_base=T minor_cov=56/27 new_cov=51/39 polymorphism_frequency=5.202e-01 polymorphism_score=238.2 prediction=polymorphism ref_cov=56/27 total_cov=107/66 RA 494 . NC_000913 1429353 0 C T bias_e_value=11831.9 bias_p_value=0.00254906 consensus_reject=FREQUENCY_CUTOFF consensus_score=11.0 fisher_strand_p_value=0.158086 frequency=5.207e-01 ks_quality_p_value=0.00175454 major_base=T major_cov=49/39 major_frequency=5.207e-01 minor_base=C minor_cov=54/27 new_cov=49/39 polymorphism_frequency=5.207e-01 polymorphism_score=254.6 prediction=polymorphism ref_cov=54/27 total_cov=103/66 RA 495 . NC_000913 1429354 0 A G bias_e_value=98254.8 bias_p_value=0.0211681 consensus_reject=FREQUENCY_CUTOFF consensus_score=22.1 fisher_strand_p_value=0.207911 frequency=5.266e-01 ks_quality_p_value=0.0150447 major_base=G major_cov=50/39 major_frequency=5.266e-01 minor_base=A minor_cov=53/27 new_cov=50/39 polymorphism_frequency=5.266e-01 polymorphism_score=233.5 prediction=polymorphism ref_cov=53/27 total_cov=103/66 RA 496 . NC_000913 1429360 0 C T bias_e_value=1367410 bias_p_value=0.294595 consensus_reject=FREQUENCY_CUTOFF consensus_score=27.8 fisher_strand_p_value=0.429312 frequency=5.449e-01 ks_quality_p_value=0.198049 major_base=T major_cov=51/40 major_frequency=5.449e-01 minor_base=C minor_cov=48/28 new_cov=51/40 polymorphism_frequency=5.449e-01 polymorphism_score=228.8 prediction=polymorphism ref_cov=48/28 total_cov=100/69 RA 497 . NC_000913 1429364 0 T C bias_e_value=2994020 bias_p_value=0.645032 consensus_reject=FREQUENCY_CUTOFF consensus_score=61.6 fisher_strand_p_value=0.440744 frequency=5.407e-01 ks_quality_p_value=0.650768 major_base=C major_cov=52/41 major_frequency=5.407e-01 minor_base=T minor_cov=49/30 new_cov=52/41 polymorphism_frequency=5.407e-01 polymorphism_score=224.8 prediction=polymorphism ref_cov=49/30 total_cov=101/72 RA 498 . NC_000913 1429404 0 C T bias_e_value=1664980 bias_p_value=0.358704 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-3.3 fisher_strand_p_value=0.521277 frequency=5.000e-01 ks_quality_p_value=0.21618 major_base=C major_cov=47/32 major_frequency=5.000e-01 minor_base=T minor_cov=42/37 new_cov=42/37 polymorphism_frequency=5.000e-01 polymorphism_score=226.0 prediction=polymorphism ref_cov=47/32 total_cov=89/69 RA 499 . NC_000913 1429416 0 A G bias_e_value=3197150 bias_p_value=0.688796 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-0.4 fisher_strand_p_value=0.749528 frequency=4.841e-01 ks_quality_p_value=0.431851 major_base=A major_cov=47/34 major_frequency=5.159e-01 minor_base=G minor_cov=42/34 new_cov=42/34 polymorphism_frequency=4.841e-01 polymorphism_score=244.2 prediction=polymorphism ref_cov=47/34 total_cov=89/68 RA 500 . NC_000913 1429417 0 C T bias_e_value=4232820 bias_p_value=0.91192 consensus_reject=FREQUENCY_CUTOFF consensus_score=29.7 fisher_strand_p_value=0.747164 frequency=4.808e-01 ks_quality_p_value=0.817503 major_base=C major_cov=47/34 major_frequency=5.192e-01 minor_base=T minor_cov=41/34 new_cov=41/34 polymorphism_frequency=4.808e-01 polymorphism_score=208.3 prediction=polymorphism ref_cov=47/34 total_cov=89/68 RA 501 . NC_000913 1429425 0 C A bias_e_value=4372920 bias_p_value=0.942104 consensus_reject=FREQUENCY_CUTOFF consensus_score=48.6 fisher_strand_p_value=0.872359 frequency=4.591e-01 ks_quality_p_value=0.77906 major_base=C major_cov=51/35 major_frequency=5.409e-01 minor_base=A minor_cov=42/31 new_cov=42/31 polymorphism_frequency=4.591e-01 polymorphism_score=200.5 prediction=polymorphism ref_cov=51/35 total_cov=93/66 RA 502 . NC_000913 1429435 0 G A bias_e_value=2170370 bias_p_value=0.467586 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.6 fisher_strand_p_value=0.869197 frequency=4.570e-01 ks_quality_p_value=0.193223 major_base=G major_cov=48/34 major_frequency=5.430e-01 minor_base=A minor_cov=39/30 new_cov=39/30 polymorphism_frequency=4.570e-01 polymorphism_score=194.6 prediction=polymorphism ref_cov=48/34 total_cov=87/64 RA 503 . NC_000913 1429442 0 A G bias_e_value=3830220 bias_p_value=0.825185 consensus_reject=FREQUENCY_CUTOFF consensus_score=48.8 fisher_strand_p_value=0.739617 frequency=4.305e-01 ks_quality_p_value=0.636046 major_base=A major_cov=51/35 major_frequency=5.695e-01 minor_base=G minor_cov=36/29 new_cov=36/29 polymorphism_frequency=4.305e-01 polymorphism_score=190.6 prediction=polymorphism ref_cov=51/35 total_cov=87/64 RA 504 . NC_000913 1429444 0 T C bias_e_value=417495 bias_p_value=0.0899454 consensus_reject=FREQUENCY_CUTOFF consensus_score=45.0 fisher_strand_p_value=0.617607 frequency=4.238e-01 ks_quality_p_value=0.0289967 major_base=T major_cov=52/35 major_frequency=5.762e-01 minor_base=C minor_cov=35/29 new_cov=35/29 polymorphism_frequency=4.238e-01 polymorphism_score=188.9 prediction=polymorphism ref_cov=52/35 total_cov=87/64 RA 505 . NC_000913 1429453 0 C T bias_e_value=806817 bias_p_value=0.173821 consensus_reject=FREQUENCY_CUTOFF consensus_score=86.6 fisher_strand_p_value=0.735959 frequency=4.218e-01 ks_quality_p_value=0.0565024 major_base=C major_cov=50/35 major_frequency=5.782e-01 minor_base=T minor_cov=34/28 new_cov=34/28 polymorphism_frequency=4.218e-01 polymorphism_score=163.0 prediction=polymorphism ref_cov=50/35 total_cov=84/63 RA 506 . NC_000913 1429454 0 A G bias_e_value=1775640 bias_p_value=0.382544 consensus_reject=FREQUENCY_CUTOFF consensus_score=60.4 fisher_strand_p_value=0.613629 frequency=4.247e-01 ks_quality_p_value=0.20184 major_base=A major_cov=50/34 major_frequency=5.753e-01 minor_base=G minor_cov=34/28 new_cov=34/28 polymorphism_frequency=4.247e-01 polymorphism_score=177.7 prediction=polymorphism ref_cov=50/34 total_cov=84/63 RA 507 . NC_000913 1429462 0 C T bias_e_value=773119 bias_p_value=0.166561 consensus_reject=FREQUENCY_CUTOFF consensus_score=92.7 fisher_strand_p_value=0.609199 frequency=4.110e-01 ks_quality_p_value=0.0645442 major_base=C major_cov=52/34 major_frequency=5.890e-01 minor_base=T minor_cov=33/27 new_cov=33/27 polymorphism_frequency=4.110e-01 polymorphism_score=168.2 prediction=polymorphism ref_cov=52/34 total_cov=85/62 RA 508 . NC_000913 1429463 0 C G bias_e_value=83125.2 bias_p_value=0.0179085 consensus_reject=FREQUENCY_CUTOFF consensus_score=108.1 fisher_strand_p_value=0.612204 frequency=4.082e-01 ks_quality_p_value=0.00420108 major_base=C major_cov=52/35 major_frequency=5.918e-01 minor_base=G minor_cov=33/27 new_cov=33/27 polymorphism_frequency=4.082e-01 polymorphism_score=223.7 prediction=polymorphism ref_cov=52/35 total_cov=85/62 RA 509 . NC_000913 1429464 0 G C bias_e_value=28143 bias_p_value=0.00606315 consensus_reject=FREQUENCY_CUTOFF consensus_score=105.3 fisher_strand_p_value=0.613375 frequency=4.000e-01 ks_quality_p_value=0.00120386 major_base=G major_cov=54/36 major_frequency=6.000e-01 minor_base=C minor_cov=33/27 new_cov=33/27 polymorphism_frequency=4.000e-01 polymorphism_score=224.3 prediction=polymorphism ref_cov=54/36 total_cov=87/63 RA 510 . NC_000913 1429466 0 G C bias_e_value=108.611 bias_p_value=2.33993e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=82.4 fisher_strand_p_value=0.614523 frequency=4.133e-01 ks_quality_p_value=2.65813e-06 major_base=G major_cov=53/35 major_frequency=5.867e-01 minor_base=C minor_cov=34/28 new_cov=34/28 polymorphism_frequency=4.133e-01 polymorphism_score=238.9 prediction=polymorphism ref_cov=53/35 total_cov=87/63 RA 511 . NC_000913 1429470 0 C T bias_e_value=2613510 bias_p_value=0.563056 consensus_reject=FREQUENCY_CUTOFF consensus_score=97.9 fisher_strand_p_value=0.315053 frequency=4.027e-01 ks_quality_p_value=0.719357 major_base=C major_cov=55/34 major_frequency=5.973e-01 minor_base=T minor_cov=32/28 new_cov=32/28 polymorphism_frequency=4.027e-01 polymorphism_score=158.8 prediction=polymorphism ref_cov=55/34 total_cov=87/62 RA 512 . NC_000913 1429471 0 G C bias_e_value=225919 bias_p_value=0.0486721 consensus_reject=FREQUENCY_CUTOFF consensus_score=71.0 fisher_strand_p_value=0.396907 frequency=4.122e-01 ks_quality_p_value=0.0212291 major_base=G major_cov=54/33 major_frequency=5.878e-01 minor_base=C minor_cov=33/28 new_cov=33/28 polymorphism_frequency=4.122e-01 polymorphism_score=227.5 prediction=polymorphism ref_cov=54/33 total_cov=87/62 RA 513 . NC_000913 1429474 0 A G bias_e_value=1253870 bias_p_value=0.270134 consensus_reject=FREQUENCY_CUTOFF consensus_score=99.9 fisher_strand_p_value=0.406346 frequency=3.961e-01 ks_quality_p_value=0.185393 major_base=A major_cov=57/36 major_frequency=6.039e-01 minor_base=G minor_cov=33/28 new_cov=33/28 polymorphism_frequency=3.961e-01 polymorphism_score=175.3 prediction=polymorphism ref_cov=57/36 total_cov=90/65 RA 514 . NC_000913 1429475 0 A G bias_e_value=817956 bias_p_value=0.176221 consensus_reject=FREQUENCY_CUTOFF consensus_score=105.0 fisher_strand_p_value=0.402541 frequency=3.947e-01 ks_quality_p_value=0.105182 major_base=A major_cov=56/36 major_frequency=6.053e-01 minor_base=G minor_cov=32/28 new_cov=32/28 polymorphism_frequency=3.947e-01 polymorphism_score=168.0 prediction=polymorphism ref_cov=56/36 total_cov=90/65 RA 515 . NC_000913 1429479 0 A T bias_e_value=641897 bias_p_value=0.138291 consensus_reject=FREQUENCY_CUTOFF consensus_score=97.9 fisher_strand_p_value=0.502065 frequency=4.094e-01 ks_quality_p_value=0.061518 major_base=A major_cov=53/35 major_frequency=5.906e-01 minor_base=T minor_cov=33/28 new_cov=33/28 polymorphism_frequency=4.094e-01 polymorphism_score=203.1 prediction=polymorphism ref_cov=53/35 total_cov=88/64 RA 516 . NC_000913 1429482 0 C T bias_e_value=441736 bias_p_value=0.0951679 consensus_reject=FREQUENCY_CUTOFF consensus_score=110.1 fisher_strand_p_value=0.505053 frequency=4.040e-01 ks_quality_p_value=0.0380525 major_base=C major_cov=54/36 major_frequency=5.960e-01 minor_base=T minor_cov=33/28 new_cov=33/28 polymorphism_frequency=4.040e-01 polymorphism_score=164.4 prediction=polymorphism ref_cov=54/36 total_cov=88/64 RA 517 . NC_000913 1429484 0 G A bias_e_value=1530040 bias_p_value=0.329632 consensus_reject=FREQUENCY_CUTOFF consensus_score=102.4 fisher_strand_p_value=0.505053 frequency=4.040e-01 ks_quality_p_value=0.197461 major_base=G major_cov=54/36 major_frequency=5.960e-01 minor_base=A minor_cov=33/28 new_cov=33/28 polymorphism_frequency=4.040e-01 polymorphism_score=165.6 prediction=polymorphism ref_cov=54/36 total_cov=87/64 RA 518 . NC_000913 1429492 0 T A bias_e_value=11579.1 bias_p_value=0.00249462 consensus_reject=FREQUENCY_CUTOFF consensus_score=74.1 fisher_strand_p_value=0.398263 frequency=4.150e-01 ks_quality_p_value=0.000679778 major_base=T major_cov=53/33 major_frequency=5.850e-01 minor_base=A minor_cov=33/28 new_cov=33/28 polymorphism_frequency=4.150e-01 polymorphism_score=203.0 prediction=polymorphism ref_cov=53/33 total_cov=86/63 RA 519 . NC_000913 1429493 0 G A bias_e_value=2685940 bias_p_value=0.578661 consensus_reject=FREQUENCY_CUTOFF consensus_score=119.8 fisher_strand_p_value=0.611245 frequency=4.054e-01 ks_quality_p_value=0.388248 major_base=G major_cov=53/35 major_frequency=5.946e-01 minor_base=A minor_cov=33/27 new_cov=33/27 polymorphism_frequency=4.054e-01 polymorphism_score=159.8 prediction=polymorphism ref_cov=53/35 total_cov=86/63 RA 520 . NC_000913 1429495 0 G T bias_e_value=489379 bias_p_value=0.105432 consensus_reject=FREQUENCY_CUTOFF consensus_score=88.3 fisher_strand_p_value=0.736902 frequency=4.027e-01 ks_quality_p_value=0.0296644 major_base=G major_cov=52/37 major_frequency=5.973e-01 minor_base=T minor_cov=33/27 new_cov=33/27 polymorphism_frequency=4.027e-01 polymorphism_score=185.8 prediction=polymorphism ref_cov=52/37 total_cov=86/64 RA 521 . NC_000913 1429510 0 A C bias_e_value=4602290 bias_p_value=0.99152 consensus_reject=FREQUENCY_CUTOFF consensus_score=51.1 fisher_strand_p_value=0.872626 frequency=4.500e-01 ks_quality_p_value=1 major_base=A major_cov=51/37 major_frequency=5.500e-01 minor_base=C minor_cov=40/32 new_cov=40/32 polymorphism_frequency=4.500e-01 polymorphism_score=195.7 prediction=polymorphism ref_cov=51/37 total_cov=91/70 RA 522 . NC_000913 1429522 0 A C bias_e_value=4205250 bias_p_value=0.90598 consensus_reject=FREQUENCY_CUTOFF consensus_score=58.7 fisher_strand_p_value=0.754823 frequency=4.491e-01 ks_quality_p_value=0.793554 major_base=A major_cov=53/39 major_frequency=5.509e-01 minor_base=C minor_cov=41/34 new_cov=41/34 polymorphism_frequency=4.491e-01 polymorphism_score=212.7 prediction=polymorphism ref_cov=53/39 total_cov=94/74 RA 523 . NC_000913 1429534 0 C T bias_e_value=825412 bias_p_value=0.177827 consensus_reject=FREQUENCY_CUTOFF consensus_score=94.9 fisher_strand_p_value=0.875287 frequency=4.182e-01 ks_quality_p_value=0.0489545 major_base=C major_cov=53/43 major_frequency=5.818e-01 minor_base=T minor_cov=39/30 new_cov=39/30 polymorphism_frequency=4.182e-01 polymorphism_score=181.5 prediction=polymorphism ref_cov=53/43 total_cov=92/73 RA 524 . NC_000913 1429537 0 G A bias_e_value=996381 bias_p_value=0.214661 consensus_reject=FREQUENCY_CUTOFF consensus_score=100.6 fisher_strand_p_value=0.871742 frequency=4.151e-01 ks_quality_p_value=0.0631465 major_base=G major_cov=50/43 major_frequency=5.849e-01 minor_base=A minor_cov=37/29 new_cov=37/29 polymorphism_frequency=4.151e-01 polymorphism_score=168.2 prediction=polymorphism ref_cov=50/43 total_cov=88/72 RA 525 . NC_000913 1429543 0 G A bias_e_value=1628710 bias_p_value=0.35089 consensus_reject=FREQUENCY_CUTOFF consensus_score=90.9 fisher_strand_p_value=0.748425 frequency=4.161e-01 ks_quality_p_value=0.145821 major_base=G major_cov=50/44 major_frequency=5.839e-01 minor_base=A minor_cov=38/29 new_cov=38/29 polymorphism_frequency=4.161e-01 polymorphism_score=180.3 prediction=polymorphism ref_cov=50/44 total_cov=88/73 RA 526 . NC_000913 1429550 0 T G bias_e_value=4408920 bias_p_value=0.949859 consensus_reject=FREQUENCY_CUTOFF consensus_score=88.2 fisher_strand_p_value=0.872177 frequency=4.076e-01 ks_quality_p_value=0.803191 major_base=T major_cov=48/45 major_frequency=5.924e-01 minor_base=G minor_cov=34/30 new_cov=34/30 polymorphism_frequency=4.076e-01 polymorphism_score=184.4 prediction=polymorphism ref_cov=48/45 total_cov=84/76 RA 527 . NC_000913 1429551 0 C A bias_e_value=4593210 bias_p_value=0.989564 consensus_reject=FREQUENCY_CUTOFF consensus_score=108.8 fisher_strand_p_value=0.872813 frequency=4.187e-01 ks_quality_p_value=0.984235 major_base=C major_cov=48/45 major_frequency=5.813e-01 minor_base=A minor_cov=36/31 new_cov=36/31 polymorphism_frequency=4.187e-01 polymorphism_score=185.1 prediction=polymorphism ref_cov=48/45 total_cov=84/76 RA 528 . NC_000913 1429558 0 T C bias_e_value=3999710 bias_p_value=0.8617 consensus_reject=FREQUENCY_CUTOFF consensus_score=103.9 fisher_strand_p_value=0.522545 frequency=4.049e-01 ks_quality_p_value=1 major_base=T major_cov=50/47 major_frequency=5.951e-01 minor_base=C minor_cov=38/28 new_cov=38/28 polymorphism_frequency=4.049e-01 polymorphism_score=170.0 prediction=polymorphism ref_cov=50/47 total_cov=88/75 RA 529 . NC_000913 1429562 0 A G bias_e_value=3917430 bias_p_value=0.843974 consensus_reject=FREQUENCY_CUTOFF consensus_score=94.7 fisher_strand_p_value=0.633692 frequency=4.000e-01 ks_quality_p_value=0.783139 major_base=A major_cov=51/48 major_frequency=6.000e-01 minor_base=G minor_cov=37/29 new_cov=37/29 polymorphism_frequency=4.000e-01 polymorphism_score=184.4 prediction=polymorphism ref_cov=51/48 total_cov=90/77 RA 530 . NC_000913 1429569 0 G A bias_e_value=3030990 bias_p_value=0.652999 consensus_reject=FREQUENCY_CUTOFF consensus_score=140.2 fisher_strand_p_value=0.521031 frequency=3.818e-01 ks_quality_p_value=0.562842 major_base=G major_cov=52/50 major_frequency=6.182e-01 minor_base=A minor_cov=36/27 new_cov=36/27 polymorphism_frequency=3.818e-01 polymorphism_score=176.8 prediction=polymorphism ref_cov=52/50 total_cov=88/77 RA 531 . NC_000913 1429571 0 A G bias_e_value=2982960 bias_p_value=0.642651 consensus_reject=FREQUENCY_CUTOFF consensus_score=113.6 fisher_strand_p_value=0.338792 frequency=3.818e-01 ks_quality_p_value=0.840989 major_base=A major_cov=50/52 major_frequency=6.182e-01 minor_base=G minor_cov=36/27 new_cov=36/27 polymorphism_frequency=3.818e-01 polymorphism_score=179.2 prediction=polymorphism ref_cov=50/52 total_cov=87/79 RA 532 . NC_000913 1429580 0 A G bias_e_value=3988500 bias_p_value=0.859285 consensus_reject=FREQUENCY_CUTOFF consensus_score=122.8 fisher_strand_p_value=0.520966 frequency=3.780e-01 ks_quality_p_value=0.995928 major_base=A major_cov=50/52 major_frequency=6.220e-01 minor_base=G minor_cov=34/28 new_cov=34/28 polymorphism_frequency=3.780e-01 polymorphism_score=173.4 prediction=polymorphism ref_cov=50/52 total_cov=85/80 RA 533 . NC_000913 1429590 0 C T bias_e_value=2392080 bias_p_value=0.515352 consensus_reject=FREQUENCY_CUTOFF consensus_score=189.3 fisher_strand_p_value=0.629607 frequency=3.593e-01 ks_quality_p_value=0.311249 major_base=C major_cov=54/53 major_frequency=6.407e-01 minor_base=T minor_cov=33/27 new_cov=33/27 polymorphism_frequency=3.593e-01 polymorphism_score=152.9 prediction=polymorphism ref_cov=54/53 total_cov=87/80 RA 534 . NC_000913 1429597 0 A G bias_e_value=3942390 bias_p_value=0.84935 consensus_reject=FREQUENCY_CUTOFF consensus_score=166.5 fisher_strand_p_value=0.504469 frequency=3.375e-01 ks_quality_p_value=0.999127 major_base=A major_cov=52/54 major_frequency=6.625e-01 minor_base=G minor_cov=30/24 new_cov=30/24 polymorphism_frequency=3.375e-01 polymorphism_score=143.5 prediction=polymorphism ref_cov=52/54 total_cov=82/78 RA 535 . NC_000913 1429598 0 T G bias_e_value=4342720 bias_p_value=0.935597 consensus_reject=FREQUENCY_CUTOFF consensus_score=173.0 fisher_strand_p_value=0.739983 frequency=3.522e-01 ks_quality_p_value=0.896352 major_base=T major_cov=51/52 major_frequency=6.478e-01 minor_base=G minor_cov=30/26 new_cov=30/26 polymorphism_frequency=3.522e-01 polymorphism_score=147.2 prediction=polymorphism ref_cov=51/52 total_cov=82/78 RA 536 . NC_000913 1429599 0 C A bias_e_value=2339730 bias_p_value=0.504073 consensus_reject=FREQUENCY_CUTOFF consensus_score=180.8 fisher_strand_p_value=0.505921 frequency=3.396e-01 ks_quality_p_value=0.37381 major_base=C major_cov=52/53 major_frequency=6.604e-01 minor_base=A minor_cov=30/24 new_cov=30/24 polymorphism_frequency=3.396e-01 polymorphism_score=148.2 prediction=polymorphism ref_cov=52/53 total_cov=82/77 RA 537 . NC_000913 1429609 0 T C bias_e_value=515649 bias_p_value=0.111092 consensus_reject=FREQUENCY_CUTOFF consensus_score=173.6 fisher_strand_p_value=0.739504 frequency=3.396e-01 ks_quality_p_value=0.0315795 major_base=T major_cov=53/52 major_frequency=6.604e-01 minor_base=C minor_cov=29/25 new_cov=29/25 polymorphism_frequency=3.396e-01 polymorphism_score=136.6 prediction=polymorphism ref_cov=53/52 total_cov=83/77 RA 538 . NC_000913 1429612 0 C A bias_e_value=2455670 bias_p_value=0.52905 consensus_reject=FREQUENCY_CUTOFF consensus_score=208.8 fisher_strand_p_value=0.619235 frequency=3.313e-01 ks_quality_p_value=0.330216 major_base=C major_cov=54/53 major_frequency=6.687e-01 minor_base=A minor_cov=29/24 new_cov=29/24 polymorphism_frequency=3.313e-01 polymorphism_score=140.4 prediction=polymorphism ref_cov=54/53 total_cov=83/78 RA 539 . NC_000913 1429615 0 T C bias_e_value=1857370 bias_p_value=0.400154 consensus_reject=FREQUENCY_CUTOFF consensus_score=166.9 fisher_strand_p_value=0.618252 frequency=3.375e-01 ks_quality_p_value=0.214192 major_base=T major_cov=54/52 major_frequency=6.625e-01 minor_base=C minor_cov=30/24 new_cov=30/24 polymorphism_frequency=3.375e-01 polymorphism_score=137.8 prediction=polymorphism ref_cov=54/52 total_cov=84/78 RA 540 . NC_000913 1429632 0 G A bias_e_value=4603090 bias_p_value=0.991693 consensus_reject=FREQUENCY_CUTOFF consensus_score=187.0 fisher_strand_p_value=0.873903 frequency=3.605e-01 ks_quality_p_value=1 major_base=G major_cov=56/54 major_frequency=6.395e-01 minor_base=A minor_cov=30/32 new_cov=30/32 polymorphism_frequency=3.605e-01 polymorphism_score=151.9 prediction=polymorphism ref_cov=56/54 total_cov=86/86 RA 541 . NC_000913 1429682 0 T G bias_e_value=4609040 bias_p_value=0.992974 consensus_reject=FREQUENCY_CUTOFF consensus_score=113.6 fisher_strand_p_value=0.883821 frequency=4.062e-01 ks_quality_p_value=1 major_base=T major_cov=60/54 major_frequency=5.938e-01 minor_base=G minor_cov=40/38 new_cov=40/38 polymorphism_frequency=4.062e-01 polymorphism_score=223.0 prediction=polymorphism ref_cov=60/54 total_cov=101/92 RA 542 . NC_000913 1429692 0 T A bias_e_value=4032410 bias_p_value=0.868745 consensus_reject=FREQUENCY_CUTOFF consensus_score=108.4 fisher_strand_p_value=0.565835 frequency=4.308e-01 ks_quality_p_value=0.942992 major_base=T major_cov=59/52 major_frequency=5.692e-01 minor_base=A minor_cov=41/43 new_cov=41/43 polymorphism_frequency=4.308e-01 polymorphism_score=275.3 prediction=polymorphism ref_cov=59/52 total_cov=100/95 RA 543 . NC_000913 1429702 0 A C bias_e_value=3543130 bias_p_value=0.763334 consensus_reject=FREQUENCY_CUTOFF consensus_score=97.8 fisher_strand_p_value=0.396543 frequency=4.455e-01 ks_quality_p_value=1 major_base=A major_cov=62/50 major_frequency=5.545e-01 minor_base=C minor_cov=44/46 new_cov=44/46 polymorphism_frequency=4.455e-01 polymorphism_score=243.3 prediction=polymorphism ref_cov=62/50 total_cov=106/96 RA 544 . NC_000913 1429708 0 A G bias_e_value=2159250 bias_p_value=0.46519 consensus_reject=FREQUENCY_CUTOFF consensus_score=54.8 fisher_strand_p_value=0.576356 frequency=4.341e-01 ks_quality_p_value=0.289074 major_base=A major_cov=62/54 major_frequency=5.659e-01 minor_base=G minor_cov=44/45 new_cov=44/45 polymorphism_frequency=4.341e-01 polymorphism_score=265.9 prediction=polymorphism ref_cov=62/54 total_cov=106/100 RA 545 . NC_000913 1429714 0 A C bias_e_value=3891140 bias_p_value=0.838308 consensus_reject=FREQUENCY_CUTOFF consensus_score=93.7 fisher_strand_p_value=0.488275 frequency=4.354e-01 ks_quality_p_value=1 major_base=A major_cov=63/55 major_frequency=5.646e-01 minor_base=C minor_cov=44/47 new_cov=44/47 polymorphism_frequency=4.354e-01 polymorphism_score=260.3 prediction=polymorphism ref_cov=63/55 total_cov=107/102 RA 546 . NC_000913 1429724 0 A G bias_e_value=4009580 bias_p_value=0.863825 consensus_reject=FREQUENCY_CUTOFF consensus_score=65.8 fisher_strand_p_value=0.671181 frequency=4.478e-01 ks_quality_p_value=0.783448 major_base=A major_cov=57/54 major_frequency=5.522e-01 minor_base=G minor_cov=43/47 new_cov=43/47 polymorphism_frequency=4.478e-01 polymorphism_score=246.1 prediction=polymorphism ref_cov=57/54 total_cov=100/103 RA 547 . NC_000913 1429732 0 G A bias_e_value=4514190 bias_p_value=0.97254 consensus_reject=FREQUENCY_CUTOFF consensus_score=116.8 fisher_strand_p_value=0.774994 frequency=4.322e-01 ks_quality_p_value=1 major_base=G major_cov=57/56 major_frequency=5.678e-01 minor_base=A minor_cov=41/45 new_cov=41/45 polymorphism_frequency=4.322e-01 polymorphism_score=227.6 prediction=polymorphism ref_cov=57/56 total_cov=98/102 RA 548 . NC_000913 1429735 0 A G bias_e_value=4227960 bias_p_value=0.910873 consensus_reject=FREQUENCY_CUTOFF consensus_score=79.0 fisher_strand_p_value=0.669465 frequency=4.250e-01 ks_quality_p_value=0.909222 major_base=A major_cov=58/57 major_frequency=5.750e-01 minor_base=G minor_cov=40/45 new_cov=40/45 polymorphism_frequency=4.250e-01 polymorphism_score=247.2 prediction=polymorphism ref_cov=58/57 total_cov=98/102 RA 549 . NC_000913 1429741 0 A G bias_e_value=3098930 bias_p_value=0.667634 consensus_reject=FREQUENCY_CUTOFF consensus_score=99.6 fisher_strand_p_value=0.305428 frequency=4.105e-01 ks_quality_p_value=0.99988 major_base=A major_cov=59/53 major_frequency=5.895e-01 minor_base=G minor_cov=35/43 new_cov=35/43 polymorphism_frequency=4.105e-01 polymorphism_score=231.4 prediction=polymorphism ref_cov=59/53 total_cov=94/98 RA 550 . NC_000913 1429744 0 T C bias_e_value=3100630 bias_p_value=0.668002 consensus_reject=FREQUENCY_CUTOFF consensus_score=119.7 fisher_strand_p_value=0.305701 frequency=4.093e-01 ks_quality_p_value=1 major_base=T major_cov=60/54 major_frequency=5.907e-01 minor_base=C minor_cov=35/44 new_cov=35/44 polymorphism_frequency=4.093e-01 polymorphism_score=224.6 prediction=polymorphism ref_cov=60/54 total_cov=95/99 RA 551 . NC_000913 1429747 0 G C bias_e_value=1403460 bias_p_value=0.302362 consensus_reject=FREQUENCY_CUTOFF consensus_score=137.5 fisher_strand_p_value=0.38146 frequency=4.072e-01 ks_quality_p_value=0.231216 major_base=G major_cov=59/56 major_frequency=5.928e-01 minor_base=C minor_cov=35/44 new_cov=35/44 polymorphism_frequency=4.072e-01 polymorphism_score=283.9 prediction=polymorphism ref_cov=59/56 total_cov=94/101 RA 552 . NC_000913 1429750 0 C T bias_e_value=624.26 bias_p_value=0.000134491 consensus_reject=FREQUENCY_CUTOFF consensus_score=131.7 fisher_strand_p_value=0.464817 frequency=4.000e-01 ks_quality_p_value=2.32693e-05 major_base=C major_cov=60/57 major_frequency=6.000e-01 minor_base=T minor_cov=35/43 new_cov=35/43 polymorphism_frequency=4.000e-01 polymorphism_score=214.5 prediction=polymorphism ref_cov=60/57 total_cov=95/101 RA 553 . NC_000913 1429753 0 G A bias_e_value=43012.8 bias_p_value=0.00926671 consensus_reject=FREQUENCY_CUTOFF consensus_score=124.9 fisher_strand_p_value=0.382996 frequency=4.010e-01 ks_quality_p_value=0.00313171 major_base=G major_cov=61/57 major_frequency=5.990e-01 minor_base=A minor_cov=35/44 new_cov=35/44 polymorphism_frequency=4.010e-01 polymorphism_score=220.3 prediction=polymorphism ref_cov=61/57 total_cov=96/103 RA 554 . NC_000913 1429756 0 C A bias_e_value=668.891 bias_p_value=0.000144106 consensus_reject=FREQUENCY_CUTOFF consensus_score=84.6 fisher_strand_p_value=0.469749 frequency=4.040e-01 ks_quality_p_value=2.48211e-05 major_base=C major_cov=60/58 major_frequency=5.960e-01 minor_base=A minor_cov=36/44 new_cov=36/44 polymorphism_frequency=4.040e-01 polymorphism_score=243.1 prediction=polymorphism ref_cov=60/58 total_cov=96/102 RA 555 . NC_000913 1429759 0 G A bias_e_value=277529 bias_p_value=0.059791 consensus_reject=FREQUENCY_CUTOFF consensus_score=149.5 fisher_strand_p_value=0.471299 frequency=3.930e-01 ks_quality_p_value=0.0229559 major_base=G major_cov=61/61 major_frequency=6.070e-01 minor_base=A minor_cov=35/44 new_cov=35/44 polymorphism_frequency=3.930e-01 polymorphism_score=219.4 prediction=polymorphism ref_cov=61/61 total_cov=97/105 RA 556 . NC_000913 1429767 0 C T bias_e_value=230581 bias_p_value=0.0496764 consensus_reject=FREQUENCY_CUTOFF consensus_score=167.1 fisher_strand_p_value=0.307188 frequency=3.889e-01 ks_quality_p_value=0.0281157 major_base=C major_cov=62/59 major_frequency=6.111e-01 minor_base=T minor_cov=33/44 new_cov=33/44 polymorphism_frequency=3.889e-01 polymorphism_score=199.2 prediction=polymorphism ref_cov=62/59 total_cov=96/105 RA 557 . NC_000913 1429780 0 A G bias_e_value=865167 bias_p_value=0.186392 consensus_reject=FREQUENCY_CUTOFF consensus_score=130.1 fisher_strand_p_value=0.29535 frequency=3.789e-01 ks_quality_p_value=0.154378 major_base=A major_cov=61/57 major_frequency=6.211e-01 minor_base=G minor_cov=31/41 new_cov=31/41 polymorphism_frequency=3.789e-01 polymorphism_score=208.2 prediction=polymorphism ref_cov=61/57 total_cov=93/98 RA 558 . NC_000913 1429783 0 G A bias_e_value=1842180 bias_p_value=0.39688 consensus_reject=FREQUENCY_CUTOFF consensus_score=186.3 fisher_strand_p_value=0.298251 frequency=3.711e-01 ks_quality_p_value=0.438593 major_base=G major_cov=63/59 major_frequency=6.289e-01 minor_base=A minor_cov=31/41 new_cov=31/41 polymorphism_frequency=3.711e-01 polymorphism_score=194.6 prediction=polymorphism ref_cov=63/59 total_cov=94/100 RA 559 . NC_000913 1429816 0 C T bias_e_value=1297510 bias_p_value=0.279537 consensus_reject=FREQUENCY_CUTOFF consensus_score=268.3 fisher_strand_p_value=0.0790042 frequency=3.077e-01 ks_quality_p_value=1 major_base=C major_cov=70/56 major_frequency=6.923e-01 minor_base=T minor_cov=23/33 new_cov=23/33 polymorphism_frequency=3.077e-01 polymorphism_score=137.9 prediction=polymorphism ref_cov=70/56 total_cov=95/90 RA 560 . NC_000913 1429820 0 A G bias_e_value=284732 bias_p_value=0.0613428 consensus_reject=FREQUENCY_CUTOFF consensus_score=237.8 fisher_strand_p_value=0.0490229 frequency=2.971e-01 ks_quality_p_value=0.227712 major_base=A major_cov=70/53 major_frequency=7.029e-01 minor_base=G minor_cov=21/31 new_cov=21/31 polymorphism_frequency=2.971e-01 polymorphism_score=136.4 prediction=polymorphism ref_cov=70/53 total_cov=92/84 RA 561 . NC_000913 1429823 0 A C bias_e_value=839731 bias_p_value=0.180912 consensus_reject=FREQUENCY_CUTOFF consensus_score=236.7 fisher_strand_p_value=0.0478846 frequency=2.955e-01 ks_quality_p_value=0.915369 major_base=A major_cov=71/53 major_frequency=7.045e-01 minor_base=C minor_cov=21/31 new_cov=21/31 polymorphism_frequency=2.955e-01 polymorphism_score=137.9 prediction=polymorphism ref_cov=71/53 total_cov=92/84 RA 562 . NC_000913 1429851 0 G A bias_e_value=109589 bias_p_value=0.0236099 consensus_reject=FREQUENCY_CUTOFF consensus_score=267.3 fisher_strand_p_value=0.0834398 frequency=2.754e-01 ks_quality_p_value=0.0426201 major_base=G major_cov=69/52 major_frequency=7.246e-01 minor_base=A minor_cov=19/27 new_cov=19/27 polymorphism_frequency=2.754e-01 polymorphism_score=117.5 prediction=polymorphism ref_cov=69/52 total_cov=88/81 RA 563 . NC_000913 1429858 0 C T bias_e_value=1148630 bias_p_value=0.247462 consensus_reject=FREQUENCY_CUTOFF consensus_score=306.5 fisher_strand_p_value=0.139315 frequency=2.420e-01 ks_quality_p_value=0.479218 major_base=C major_cov=67/52 major_frequency=7.580e-01 minor_base=T minor_cov=16/22 new_cov=16/22 polymorphism_frequency=2.420e-01 polymorphism_score=84.0 prediction=polymorphism ref_cov=67/52 total_cov=86/75 RA 564 . NC_000913 1429861 0 G C bias_e_value=1676180 bias_p_value=0.361117 consensus_reject=FREQUENCY_CUTOFF consensus_score=329.6 fisher_strand_p_value=0.273082 frequency=2.484e-01 ks_quality_p_value=0.416714 major_base=G major_cov=68/53 major_frequency=7.516e-01 minor_base=C minor_cov=18/22 new_cov=18/22 polymorphism_frequency=2.484e-01 polymorphism_score=126.1 prediction=polymorphism ref_cov=68/53 total_cov=86/75 RA 565 . NC_000913 1429863 0 A G bias_e_value=2173110 bias_p_value=0.468175 consensus_reject=FREQUENCY_CUTOFF consensus_score=270.7 fisher_strand_p_value=0.209236 frequency=2.515e-01 ks_quality_p_value=0.804257 major_base=A major_cov=68/54 major_frequency=7.485e-01 minor_base=G minor_cov=18/23 new_cov=18/23 polymorphism_frequency=2.515e-01 polymorphism_score=94.5 prediction=polymorphism ref_cov=68/54 total_cov=86/77 RA 566 . NC_000913 1494388 0 C . consensus_score=256.0 frequency=1 major_base=. major_cov=22/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/33 RA 567 . NC_000913 1517508 0 G T bias_e_value=4641650 bias_p_value=0.999999 consensus_score=114.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998321 major_base=T major_cov=17/17 major_frequency=9.714e-01 minor_base=A minor_cov=0/1 new_cov=17/17 polymorphism_frequency=9.714e-01 polymorphism_score=-6.0 prediction=consensus ref_cov=0/0 total_cov=17/18 RA 568 . NC_000913 1564294 0 C T consensus_score=188.0 frequency=1 major_base=T major_cov=29/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/28 RA 569 . NC_000913 1580143 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=113.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=18/17 major_frequency=9.459e-01 minor_base=C minor_cov=1/1 new_cov=18/17 polymorphism_frequency=9.459e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=1/1 total_cov=19/18 RA 570 . NC_000913 1591418 0 C T consensus_score=188.7 frequency=1 major_base=T major_cov=28/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/28 RA 571 . NC_000913 1593422 0 C T consensus_score=275.9 frequency=1 major_base=T major_cov=39/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/42 RA 572 . NC_000913 1598229 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=74.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=11/11 major_frequency=9.565e-01 minor_base=G minor_cov=0/1 new_cov=11/11 polymorphism_frequency=9.565e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/12 RA 573 . NC_000913 1605649 0 C T consensus_score=153.6 frequency=1 major_base=T major_cov=23/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/23 RA 574 . NC_000913 1627000 0 C T consensus_score=123.7 frequency=1 major_base=T major_cov=20/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/18 RA 575 . NC_000913 1628875 0 C T consensus_score=176.9 frequency=1 major_base=T major_cov=28/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/23 RA 576 . NC_000913 1634482 0 T C bias_e_value=4641640 bias_p_value=0.999997 consensus_reject=FREQUENCY_CUTOFF consensus_score=10.9 fisher_strand_p_value=1 frequency=4.839e-01 ks_quality_p_value=0.997584 major_base=T major_cov=9/7 major_frequency=5.161e-01 minor_base=C minor_cov=9/6 new_cov=9/6 polymorphism_frequency=4.839e-01 polymorphism_score=37.6 prediction=polymorphism ref_cov=9/7 total_cov=18/13 RA 577 . NC_000913 1634484 0 G T bias_e_value=4550560 bias_p_value=0.980375 consensus_reject=FREQUENCY_CUTOFF consensus_score=12.4 fisher_strand_p_value=1 frequency=4.516e-01 ks_quality_p_value=0.808541 major_base=G major_cov=10/7 major_frequency=5.484e-01 minor_base=T minor_cov=8/6 new_cov=8/6 polymorphism_frequency=4.516e-01 polymorphism_score=37.0 prediction=polymorphism ref_cov=10/7 total_cov=18/13 RA 578 . NC_000913 1634569 0 A T bias_e_value=3067430 bias_p_value=0.660849 consensus_reject=FREQUENCY_CUTOFF consensus_score=47.4 fisher_strand_p_value=0.330183 frequency=4.478e-01 ks_quality_p_value=0.907726 major_base=A major_cov=21/16 major_frequency=5.522e-01 minor_base=T minor_cov=13/17 new_cov=13/17 polymorphism_frequency=4.478e-01 polymorphism_score=94.8 prediction=polymorphism ref_cov=21/16 total_cov=34/33 RA 579 . NC_000913 1634571 0 C T bias_e_value=3652370 bias_p_value=0.786868 consensus_reject=FREQUENCY_CUTOFF consensus_score=44.6 fisher_strand_p_value=0.464076 frequency=4.412e-01 ks_quality_p_value=0.911304 major_base=C major_cov=21/17 major_frequency=5.588e-01 minor_base=T minor_cov=13/17 new_cov=13/17 polymorphism_frequency=4.412e-01 polymorphism_score=79.7 prediction=polymorphism ref_cov=21/17 total_cov=34/34 RA 580 . NC_000913 1634578 0 T C bias_e_value=1613110 bias_p_value=0.34753 consensus_reject=FREQUENCY_CUTOFF consensus_score=41.1 fisher_strand_p_value=0.464076 frequency=4.412e-01 ks_quality_p_value=0.231911 major_base=T major_cov=21/17 major_frequency=5.588e-01 minor_base=C minor_cov=13/17 new_cov=13/17 polymorphism_frequency=4.412e-01 polymorphism_score=87.1 prediction=polymorphism ref_cov=21/17 total_cov=34/34 RA 581 . NC_000913 1634597 0 C A bias_e_value=2029670 bias_p_value=0.437274 consensus_reject=FREQUENCY_CUTOFF consensus_score=53.5 fisher_strand_p_value=0.248582 frequency=4.474e-01 ks_quality_p_value=0.609174 major_base=C major_cov=24/18 major_frequency=5.526e-01 minor_base=A minor_cov=14/20 new_cov=14/20 polymorphism_frequency=4.474e-01 polymorphism_score=106.1 prediction=polymorphism ref_cov=24/18 total_cov=38/38 RA 582 . NC_000913 1634658 0 A G bias_e_value=3570640 bias_p_value=0.769261 consensus_reject=FREQUENCY_CUTOFF consensus_score=46.5 fisher_strand_p_value=0.408155 frequency=4.889e-01 ks_quality_p_value=0.987388 major_base=A major_cov=24/22 major_frequency=5.111e-01 minor_base=G minor_cov=19/25 new_cov=19/25 polymorphism_frequency=4.889e-01 polymorphism_score=132.3 prediction=polymorphism ref_cov=24/22 total_cov=43/47 RA 583 . NC_000913 1634661 0 C G bias_e_value=3707970 bias_p_value=0.798846 consensus_reject=FREQUENCY_CUTOFF consensus_score=51.5 fisher_strand_p_value=0.526434 frequency=4.944e-01 ks_quality_p_value=0.830316 major_base=C major_cov=23/22 major_frequency=5.056e-01 minor_base=G minor_cov=19/25 new_cov=19/25 polymorphism_frequency=4.944e-01 polymorphism_score=164.1 prediction=polymorphism ref_cov=23/22 total_cov=43/47 RA 584 . NC_000913 1634676 0 A G bias_e_value=3495400 bias_p_value=0.75305 consensus_reject=FREQUENCY_CUTOFF consensus_score=54.2 fisher_strand_p_value=0.391062 frequency=4.713e-01 ks_quality_p_value=0.986008 major_base=A major_cov=24/22 major_frequency=5.287e-01 minor_base=G minor_cov=17/24 new_cov=17/24 polymorphism_frequency=4.713e-01 polymorphism_score=115.3 prediction=polymorphism ref_cov=24/22 total_cov=41/46 RA 585 . NC_000913 1634699 0 A C bias_e_value=3785870 bias_p_value=0.815629 consensus_reject=FREQUENCY_CUTOFF consensus_score=51.0 fisher_strand_p_value=0.491249 frequency=4.545e-01 ks_quality_p_value=0.932273 major_base=A major_cov=21/21 major_frequency=5.455e-01 minor_base=C minor_cov=14/21 new_cov=14/21 polymorphism_frequency=4.545e-01 polymorphism_score=106.2 prediction=polymorphism ref_cov=21/21 total_cov=35/43 RA 586 . NC_000913 1634724 0 G A bias_e_value=192325 bias_p_value=0.0414347 consensus_reject=FREQUENCY_CUTOFF consensus_score=41.8 fisher_strand_p_value=0.460141 frequency=4.688e-01 ks_quality_p_value=0.0150822 major_base=G major_cov=17/17 major_frequency=5.312e-01 minor_base=A minor_cov=12/18 new_cov=12/18 polymorphism_frequency=4.688e-01 polymorphism_score=82.3 prediction=polymorphism ref_cov=17/17 total_cov=29/35 RA 587 . NC_000913 1634769 0 T A bias_e_value=3782910 bias_p_value=0.814993 consensus_reject=FREQUENCY_CUTOFF consensus_score=25.8 fisher_strand_p_value=0.537781 frequency=4.750e-01 ks_quality_p_value=0.850096 major_base=T major_cov=10/11 major_frequency=5.250e-01 minor_base=A minor_cov=7/12 new_cov=7/12 polymorphism_frequency=4.750e-01 polymorphism_score=63.4 prediction=polymorphism ref_cov=10/11 total_cov=18/23 RA 588 . NC_000913 1634778 0 T G bias_e_value=3717780 bias_p_value=0.800961 consensus_reject=FREQUENCY_CUTOFF consensus_score=27.5 fisher_strand_p_value=0.751186 frequency=4.872e-01 ks_quality_p_value=0.585302 major_base=T major_cov=10/10 major_frequency=5.128e-01 minor_base=G minor_cov=8/11 new_cov=8/11 polymorphism_frequency=4.872e-01 polymorphism_score=52.2 prediction=polymorphism ref_cov=10/10 total_cov=18/21 RA 589 . NC_000913 1634799 0 A G bias_e_value=4405110 bias_p_value=0.949039 consensus_reject=FREQUENCY_CUTOFF consensus_score=35.6 fisher_strand_p_value=1 frequency=4.250e-01 ks_quality_p_value=0.69823 major_base=A major_cov=10/13 major_frequency=5.750e-01 minor_base=G minor_cov=8/9 new_cov=8/9 polymorphism_frequency=4.250e-01 polymorphism_score=47.0 prediction=polymorphism ref_cov=10/13 total_cov=18/22 RA 590 . NC_000913 1635974 0 T G bias_e_value=253286 bias_p_value=0.0545681 consensus_reject=FREQUENCY_CUTOFF consensus_score=36.4 fisher_strand_p_value=0.0929988 frequency=4.659e-01 ks_quality_p_value=0.104076 major_base=T major_cov=27/20 major_frequency=5.341e-01 minor_base=G minor_cov=16/25 new_cov=16/25 polymorphism_frequency=4.659e-01 polymorphism_score=102.9 prediction=polymorphism ref_cov=27/20 total_cov=43/46 RA 591 . NC_000913 1636068 0 T C bias_e_value=1852520 bias_p_value=0.399109 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-3.8 fisher_strand_p_value=0.137292 frequency=5.556e-01 ks_quality_p_value=0.960789 major_base=C major_cov=19/31 major_frequency=5.556e-01 minor_base=T minor_cov=22/18 new_cov=19/31 polymorphism_frequency=5.556e-01 polymorphism_score=112.0 prediction=polymorphism ref_cov=22/18 total_cov=42/50 RA 592 . NC_000913 1636074 0 C T bias_e_value=3090340 bias_p_value=0.665784 consensus_reject=FREQUENCY_CUTOFF consensus_score=24.5 fisher_strand_p_value=0.303835 frequency=5.208e-01 ks_quality_p_value=1 major_base=T major_cov=19/31 major_frequency=5.208e-01 minor_base=C minor_cov=23/23 new_cov=19/31 polymorphism_frequency=5.208e-01 polymorphism_score=136.7 prediction=polymorphism ref_cov=23/23 total_cov=42/54 RA 593 . NC_000913 1636128 0 C T bias_e_value=1655780 bias_p_value=0.356722 consensus_reject=FREQUENCY_CUTOFF consensus_score=42.1 fisher_strand_p_value=0.374947 frequency=4.691e-01 ks_quality_p_value=0.29813 major_base=C major_cov=23/20 major_frequency=5.309e-01 minor_base=T minor_cov=16/22 new_cov=16/22 polymorphism_frequency=4.691e-01 polymorphism_score=101.2 prediction=polymorphism ref_cov=23/20 total_cov=39/45 RA 594 . NC_000913 1636145 0 T C bias_e_value=317487 bias_p_value=0.0683995 consensus_reject=FREQUENCY_CUTOFF consensus_score=30.5 fisher_strand_p_value=0.375824 frequency=4.625e-01 ks_quality_p_value=0.0339445 major_base=T major_cov=22/21 major_frequency=5.375e-01 minor_base=C minor_cov=15/22 new_cov=15/22 polymorphism_frequency=4.625e-01 polymorphism_score=112.8 prediction=polymorphism ref_cov=22/21 total_cov=37/43 RA 595 . NC_000913 1636173 0 T C bias_e_value=1257810 bias_p_value=0.270982 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.7 fisher_strand_p_value=0.594338 frequency=3.492e-01 ks_quality_p_value=0.127305 major_base=T major_cov=19/22 major_frequency=6.508e-01 minor_base=C minor_cov=8/14 new_cov=8/14 polymorphism_frequency=3.492e-01 polymorphism_score=64.2 prediction=polymorphism ref_cov=19/22 total_cov=28/36 RA 596 . NC_000913 1636413 0 C A bias_e_value=4340140 bias_p_value=0.935043 consensus_reject=FREQUENCY_CUTOFF consensus_score=128.3 fisher_strand_p_value=0.75458 frequency=2.167e-01 ks_quality_p_value=0.877229 major_base=C major_cov=21/26 major_frequency=7.833e-01 minor_base=A minor_cov=7/6 new_cov=7/6 polymorphism_frequency=2.167e-01 polymorphism_score=26.7 prediction=polymorphism ref_cov=21/26 total_cov=28/33 RA 597 . NC_000913 1636423 0 T C bias_e_value=4481120 bias_p_value=0.965415 consensus_reject=FREQUENCY_CUTOFF consensus_score=77.3 fisher_strand_p_value=1 frequency=2.857e-01 ks_quality_p_value=0.748798 major_base=T major_cov=16/24 major_frequency=7.143e-01 minor_base=C minor_cov=7/9 new_cov=7/9 polymorphism_frequency=2.857e-01 polymorphism_score=36.7 prediction=polymorphism ref_cov=16/24 total_cov=24/33 RA 598 . NC_000913 1636455 0 G A bias_e_value=2624500 bias_p_value=0.565424 consensus_reject=FREQUENCY_CUTOFF consensus_score=79.8 fisher_strand_p_value=1 frequency=3.582e-01 ks_quality_p_value=0.228235 major_base=G major_cov=17/26 major_frequency=6.418e-01 minor_base=A minor_cov=10/14 new_cov=10/14 polymorphism_frequency=3.582e-01 polymorphism_score=62.2 prediction=polymorphism ref_cov=17/26 total_cov=29/41 RA 599 . NC_000913 1636484 0 C T bias_e_value=2614310 bias_p_value=0.563228 consensus_reject=FREQUENCY_CUTOFF consensus_score=73.8 fisher_strand_p_value=1 frequency=3.902e-01 ks_quality_p_value=0.226751 major_base=C major_cov=23/27 major_frequency=6.098e-01 minor_base=T minor_cov=15/17 new_cov=15/17 polymorphism_frequency=3.902e-01 polymorphism_score=82.0 prediction=polymorphism ref_cov=23/27 total_cov=38/44 RA 600 . NC_000913 1636503 0 T C bias_e_value=3270460 bias_p_value=0.704589 consensus_reject=FREQUENCY_CUTOFF consensus_score=34.6 fisher_strand_p_value=0.52371 frequency=4.333e-01 ks_quality_p_value=0.64532 major_base=T major_cov=23/28 major_frequency=5.667e-01 minor_base=C minor_cov=21/18 new_cov=21/18 polymorphism_frequency=4.333e-01 polymorphism_score=117.6 prediction=polymorphism ref_cov=23/28 total_cov=44/46 RA 601 . NC_000913 1637739 0 G A bias_e_value=3709480 bias_p_value=0.799172 consensus_score=43.7 fisher_strand_p_value=0.4375 frequency=1 ks_quality_p_value=1 major_base=A major_cov=6/9 major_frequency=9.375e-01 minor_base=C minor_cov=1/0 new_cov=6/9 polymorphism_frequency=9.375e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/9 RA 602 . NC_000913 1652331 0 T C bias_e_value=4612670 bias_p_value=0.993755 consensus_score=139.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.890347 major_base=C major_cov=20/21 major_frequency=9.762e-01 minor_base=T minor_cov=1/0 new_cov=20/21 polymorphism_frequency=9.762e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=1/0 total_cov=21/21 RA 603 . NC_000913 1667887 0 C . bias_e_value=1981830 bias_p_value=0.426967 consensus_score=313.7 fisher_strand_p_value=0.147887 frequency=1 ks_quality_p_value=0.987382 major_base=. major_cov=26/44 major_frequency=9.722e-01 minor_base=C minor_cov=2/0 new_cov=26/44 polymorphism_frequency=9.722e-01 polymorphism_score=-1.6 prediction=consensus ref_cov=2/0 total_cov=28/44 RA 604 . NC_000913 1674116 0 G T bias_e_value=5.92391 bias_p_value=1.27625e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=85.5 fisher_strand_p_value=7.32225e-08 frequency=3.462e-01 ks_quality_p_value=1 major_base=G major_cov=8/26 major_frequency=6.538e-01 minor_base=T minor_cov=18/0 new_cov=18/0 polymorphism_frequency=3.462e-01 polymorphism_score=16.4 prediction=polymorphism ref_cov=8/26 total_cov=27/26 RA 605 . NC_000913 1693035 0 G A consensus_score=107.0 frequency=1 major_base=A major_cov=20/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/14 RA 606 . NC_000913 1716110 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=166.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999301 major_base=A major_cov=31/22 major_frequency=9.815e-01 minor_base=C minor_cov=1/0 new_cov=31/22 polymorphism_frequency=9.815e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/22 RA 607 . NC_000913 1723394 0 T C consensus_score=193.8 frequency=1 major_base=C major_cov=24/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/30 RA 608 . NC_000913 1744751 0 C . bias_e_value=4641420 bias_p_value=0.999951 consensus_score=187.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.990083 major_base=. major_cov=23/19 major_frequency=9.767e-01 minor_base=C minor_cov=1/0 new_cov=23/19 polymorphism_frequency=9.767e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/0 total_cov=24/19 RA 609 . NC_000913 1784535 0 G A bias_e_value=4598920 bias_p_value=0.990793 consensus_score=122.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.867407 major_base=A major_cov=19/18 major_frequency=9.737e-01 minor_base=G minor_cov=1/0 new_cov=19/18 polymorphism_frequency=9.737e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/0 total_cov=21/18 RA 610 . NC_000913 1789888 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=124.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=24/15 major_frequency=9.750e-01 minor_base=G minor_cov=1/0 new_cov=24/15 polymorphism_frequency=9.750e-01 polymorphism_score=-7.1 prediction=consensus ref_cov=1/0 total_cov=26/15 RA 611 . NC_000913 1792138 0 G A consensus_score=60.0 frequency=1 major_base=A major_cov=7/13 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/13 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/13 RA 612 . NC_000913 1814697 0 C T consensus_score=207.6 frequency=1 major_base=T major_cov=32/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/30 RA 613 . NC_000913 1834800 0 G A consensus_score=139.4 frequency=1 major_base=A major_cov=24/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/18 RA 614 . NC_000913 1841889 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=113.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=16/19 major_frequency=9.722e-01 minor_base=C minor_cov=0/1 new_cov=16/19 polymorphism_frequency=9.722e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/20 RA 615 . NC_000913 1844327 0 G A bias_e_value=3940130 bias_p_value=0.848863 consensus_score=163.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.503319 major_base=A major_cov=24/25 major_frequency=9.800e-01 minor_base=G minor_cov=0/1 new_cov=24/25 polymorphism_frequency=9.800e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/1 total_cov=24/26 RA 616 . NC_000913 1890220 0 G A consensus_score=136.8 frequency=1 major_base=A major_cov=18/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/23 RA 617 . NC_000913 1911287 0 G A bias_e_value=4030780 bias_p_value=0.868393 consensus_score=183.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.533018 major_base=A major_cov=29/28 major_frequency=9.661e-01 minor_base=G minor_cov=1/1 new_cov=29/28 polymorphism_frequency=9.661e-01 polymorphism_score=-1.4 prediction=consensus ref_cov=1/1 total_cov=30/30 RA 618 . NC_000913 1914184 0 G A bias_e_value=2811830 bias_p_value=0.605783 consensus_score=186.5 fisher_strand_p_value=0.481481 frequency=1 ks_quality_p_value=0.533162 major_base=A major_cov=25/28 major_frequency=9.815e-01 minor_base=. minor_cov=1/0 new_cov=25/28 polymorphism_frequency=9.815e-01 polymorphism_score=-2.8 prediction=consensus ref_cov=0/0 total_cov=26/28 RA 619 . NC_000913 1918760 0 G A consensus_score=263.2 frequency=1 major_base=A major_cov=36/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/41 RA 620 . NC_000913 1944191 0 G A bias_e_value=4609680 bias_p_value=0.993112 consensus_score=134.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.884952 major_base=A major_cov=13/31 major_frequency=9.778e-01 minor_base=C minor_cov=0/1 new_cov=13/31 polymorphism_frequency=9.778e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=0/0 total_cov=13/32 RA 621 . NC_000913 1953879 0 C T bias_e_value=2314180 bias_p_value=0.498568 consensus_score=186.2 fisher_strand_p_value=0.213559 frequency=1 ks_quality_p_value=0.870158 major_base=T major_cov=32/26 major_frequency=9.667e-01 minor_base=G minor_cov=0/2 new_cov=32/26 polymorphism_frequency=9.667e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/28 RA 622 . NC_000913 1954628 0 C T consensus_score=117.3 frequency=1 major_base=T major_cov=17/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=17/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/22 RA 623 . NC_000913 1959513 0 C T consensus_score=198.8 frequency=1 major_base=T major_cov=30/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/31 RA 624 . NC_000913 1962183 0 C T consensus_score=104.4 frequency=1 major_base=T major_cov=18/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/15 RA 625 . NC_000913 1964451 0 C T bias_e_value=3829180 bias_p_value=0.824962 consensus_score=209.9 fisher_strand_p_value=0.47619 frequency=1 ks_quality_p_value=0.987281 major_base=T major_cov=29/33 major_frequency=9.841e-01 minor_base=A minor_cov=1/0 new_cov=29/33 polymorphism_frequency=9.841e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/33 RA 626 . NC_000913 1969912 0 C T consensus_score=222.3 frequency=1 major_base=T major_cov=40/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/28 RA 627 . NC_000913 1970990 0 C T consensus_score=190.4 frequency=1 major_base=T major_cov=31/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/24 RA 628 . NC_000913 1973377 0 C T bias_e_value=3526570 bias_p_value=0.759765 consensus_score=190.6 fisher_strand_p_value=0.474576 frequency=1 ks_quality_p_value=0.827486 major_base=T major_cov=27/31 major_frequency=9.831e-01 minor_base=C minor_cov=1/0 new_cov=27/31 polymorphism_frequency=9.831e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/0 total_cov=28/31 RA 629 . NC_000913 1978243 0 G T bias_e_value=3850220 bias_p_value=0.829494 consensus_score=140.5 fisher_strand_p_value=0.47619 frequency=1 ks_quality_p_value=1 major_base=T major_cov=22/19 major_frequency=9.762e-01 minor_base=G minor_cov=0/1 new_cov=22/19 polymorphism_frequency=9.762e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=22/20 RA 630 . NC_000913 2003264 0 C T consensus_score=163.4 frequency=1 major_base=T major_cov=23/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/24 RA 631 . NC_000913 2032423 0 G A consensus_score=178.0 frequency=1 major_base=A major_cov=31/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/25 RA 632 . NC_000913 2173363 0 C . bias_e_value=458174 bias_p_value=0.0987093 consensus_score=168.8 fisher_strand_p_value=0.0225413 frequency=1 ks_quality_p_value=0.892582 major_base=. major_cov=26/14 major_frequency=9.091e-01 minor_base=C minor_cov=0/4 new_cov=26/14 polymorphism_frequency=9.091e-01 polymorphism_score=11.0 prediction=consensus ref_cov=0/4 total_cov=26/18 RA 633 . NC_000913 2173364 0 C . bias_e_value=373638 bias_p_value=0.0804968 consensus_score=168.8 fisher_strand_p_value=0.0225413 frequency=1 ks_quality_p_value=0.691991 major_base=. major_cov=26/14 major_frequency=9.091e-01 minor_base=C minor_cov=0/4 new_cov=26/14 polymorphism_frequency=9.091e-01 polymorphism_score=11.0 prediction=consensus ref_cov=0/4 total_cov=26/18 RA 634 . NC_000913 2242121 0 A G bias_e_value=3878080 bias_p_value=0.835496 consensus_score=206.3 fisher_strand_p_value=0.484375 frequency=1 ks_quality_p_value=1 major_base=G major_cov=33/30 major_frequency=9.844e-01 minor_base=T minor_cov=0/1 new_cov=33/30 polymorphism_frequency=9.844e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/31 RA 635 . NC_000913 2377835 0 G A bias_e_value=5.90632 bias_p_value=1.27246e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=110.3 fisher_strand_p_value=8.05674e-08 frequency=2.414e-01 ks_quality_p_value=0.905973 major_base=G major_cov=35/9 major_frequency=7.586e-01 minor_base=A minor_cov=0/14 new_cov=0/14 polymorphism_frequency=2.414e-01 polymorphism_score=10.4 prediction=polymorphism ref_cov=35/9 total_cov=35/26 RA 636 . NC_000913 2397444 0 G A consensus_score=365.9 frequency=1 major_base=A major_cov=63/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=63/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=63/42 RA 637 . NC_000913 2713696 0 G A bias_e_value=3741510 bias_p_value=0.806073 consensus_score=246.7 fisher_strand_p_value=0.445946 frequency=1 ks_quality_p_value=1 major_base=A major_cov=41/32 major_frequency=9.865e-01 minor_base=G minor_cov=0/1 new_cov=41/32 polymorphism_frequency=9.865e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=42/33 RA 638 . NC_000913 2745089 0 A C bias_e_value=0.00025742 bias_p_value=5.54587e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=109.9 fisher_strand_p_value=1.98452e-12 frequency=3.380e-01 ks_quality_p_value=1 major_base=A major_cov=39/8 major_frequency=6.620e-01 minor_base=C minor_cov=0/24 new_cov=0/24 polymorphism_frequency=3.380e-01 polymorphism_score=13.4 prediction=polymorphism ref_cov=39/8 total_cov=39/36 RA 639 . NC_000913 2821231 0 G A consensus_score=335.5 frequency=1 major_base=A major_cov=62/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/35 RA 640 . NC_000913 2846683 0 G T bias_e_value=587.067 bias_p_value=0.000126478 consensus_reject=FREQUENCY_CUTOFF consensus_score=99.1 fisher_strand_p_value=1.18654e-05 frequency=2.241e-01 ks_quality_p_value=0.852666 major_base=G major_cov=15/30 major_frequency=7.759e-01 minor_base=T minor_cov=13/0 new_cov=13/0 polymorphism_frequency=2.241e-01 polymorphism_score=10.9 prediction=polymorphism ref_cov=15/30 total_cov=29/30 RA 641 . NC_000913 2846705 0 G C bias_e_value=427.344 bias_p_value=9.20672e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=117.3 fisher_strand_p_value=7.16698e-06 frequency=2.364e-01 ks_quality_p_value=1 major_base=G major_cov=13/29 major_frequency=7.636e-01 minor_base=C minor_cov=13/0 new_cov=13/0 polymorphism_frequency=2.364e-01 polymorphism_score=12.2 prediction=polymorphism ref_cov=13/29 total_cov=27/29 RA 642 . NC_000913 2930026 0 A T bias_e_value=103.33 bias_p_value=2.22615e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=128.6 fisher_strand_p_value=1.62068e-06 frequency=2.188e-01 ks_quality_p_value=0.955315 major_base=A major_cov=15/35 major_frequency=7.812e-01 minor_base=T minor_cov=14/0 new_cov=14/0 polymorphism_frequency=2.188e-01 polymorphism_score=10.4 prediction=polymorphism ref_cov=15/35 total_cov=29/36 RA 643 . NC_000913 2930047 0 G T bias_e_value=0.516634 bias_p_value=1.11304e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=118.2 fisher_strand_p_value=6.26469e-09 frequency=2.969e-01 ks_quality_p_value=0.88803 major_base=G major_cov=11/34 major_frequency=7.031e-01 minor_base=T minor_cov=19/0 new_cov=19/0 polymorphism_frequency=2.969e-01 polymorphism_score=16.5 prediction=polymorphism ref_cov=11/34 total_cov=30/34 RA 644 . NC_000913 3018330 0 C T bias_e_value=3839600 bias_p_value=0.827205 consensus_score=304.3 fisher_strand_p_value=0.473118 frequency=1 ks_quality_p_value=1 major_base=T major_cov=49/43 major_frequency=9.892e-01 minor_base=G minor_cov=0/1 new_cov=49/43 polymorphism_frequency=9.892e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/44 RA 645 . NC_000913 3021885 0 C T bias_e_value=3638080 bias_p_value=0.78379 consensus_score=204.5 fisher_strand_p_value=0.419355 frequency=1 ks_quality_p_value=1 major_base=T major_cov=25/36 major_frequency=9.839e-01 minor_base=G minor_cov=1/0 new_cov=25/36 polymorphism_frequency=9.839e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/36 RA 646 . NC_000913 3022725 0 C T bias_e_value=3019100 bias_p_value=0.650436 consensus_score=239.8 fisher_strand_p_value=0.452055 frequency=1 ks_quality_p_value=0.644115 major_base=T major_cov=40/32 major_frequency=9.863e-01 minor_base=C minor_cov=0/1 new_cov=40/32 polymorphism_frequency=9.863e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=40/33 RA 647 . NC_000913 3022890 0 C T bias_e_value=4641640 bias_p_value=0.999998 consensus_score=318.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997943 major_base=T major_cov=49/44 major_frequency=9.894e-01 minor_base=G minor_cov=1/0 new_cov=49/44 polymorphism_frequency=9.894e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/44 RA 648 . NC_000913 3023453 0 C T consensus_score=362.1 frequency=1 major_base=T major_cov=52/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/51 RA 649 . NC_000913 3025706 0 G A consensus_score=99.4 frequency=1 major_base=A major_cov=18/16 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/16 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/16 RA 650 . NC_000913 3036530 0 C T consensus_score=310.8 frequency=1 major_base=T major_cov=58/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/34 RA 651 . NC_000913 3037220 0 C T bias_e_value=3642940 bias_p_value=0.784836 consensus_score=354.3 fisher_strand_p_value=0.420561 frequency=1 ks_quality_p_value=1 major_base=T major_cov=62/44 major_frequency=9.907e-01 minor_base=A minor_cov=0/1 new_cov=62/44 polymorphism_frequency=9.907e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/46 RA 652 . NC_000913 3045508 0 C T consensus_score=206.3 frequency=1 major_base=T major_cov=27/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/36 RA 653 . NC_000913 3047801 0 C T bias_e_value=2718770 bias_p_value=0.585734 consensus_score=331.4 fisher_strand_p_value=0.242268 frequency=1 ks_quality_p_value=1 major_base=T major_cov=49/46 major_frequency=9.694e-01 minor_base=G minor_cov=0/3 new_cov=49/46 polymorphism_frequency=9.694e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=49/50 RA 654 . NC_000913 3054549 0 C T bias_e_value=4641650 bias_p_value=0.999999 consensus_score=255.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998597 major_base=T major_cov=42/33 major_frequency=9.868e-01 minor_base=G minor_cov=1/0 new_cov=42/33 polymorphism_frequency=9.868e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/33 RA 655 . NC_000913 3061743 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=291.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999739 major_base=T major_cov=47/40 major_frequency=9.886e-01 minor_base=A minor_cov=1/0 new_cov=47/40 polymorphism_frequency=9.886e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/40 RA 656 . NC_000913 3062669 0 C T bias_e_value=2703590 bias_p_value=0.582463 consensus_score=403.3 fisher_strand_p_value=0.239969 frequency=1 ks_quality_p_value=1 major_base=T major_cov=59/63 major_frequency=9.839e-01 minor_base=G minor_cov=2/0 new_cov=59/63 polymorphism_frequency=9.839e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/63 RA 657 . NC_000913 3079623 0 C T consensus_score=192.1 frequency=1 major_base=T major_cov=34/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/21 RA 658 . NC_000913 3080682 0 A G bias_e_value=1085.17 bias_p_value=0.000233789 consensus_reject=FREQUENCY_CUTOFF consensus_score=113.8 fisher_strand_p_value=1.97592e-05 frequency=2.333e-01 ks_quality_p_value=1 major_base=A major_cov=17/29 major_frequency=7.667e-01 minor_base=G minor_cov=14/0 new_cov=14/0 polymorphism_frequency=2.333e-01 polymorphism_score=11.2 prediction=polymorphism ref_cov=17/29 total_cov=31/29 RA 659 . NC_000913 3080748 0 C T bias_e_value=2210.58 bias_p_value=0.000476248 consensus_reject=FREQUENCY_CUTOFF consensus_score=146.1 fisher_strand_p_value=4.30907e-05 frequency=2.239e-01 ks_quality_p_value=1 major_base=C major_cov=22/30 major_frequency=7.761e-01 minor_base=T minor_cov=15/0 new_cov=15/0 polymorphism_frequency=2.239e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=22/30 total_cov=37/30 RA 660 . NC_000913 3083186 0 C T bias_e_value=4553470 bias_p_value=0.981003 consensus_score=403.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.811518 major_base=T major_cov=52/62 major_frequency=9.913e-01 minor_base=C minor_cov=0/1 new_cov=52/62 polymorphism_frequency=9.913e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/1 total_cov=52/63 RA 661 . NC_000913 3088390 0 T C consensus_score=187.2 frequency=1 major_base=C major_cov=30/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/22 RA 662 . NC_000913 3099793 0 G A bias_e_value=2264380 bias_p_value=0.48784 consensus_score=229.1 fisher_strand_p_value=0.180124 frequency=1 ks_quality_p_value=0.996644 major_base=A major_cov=40/28 major_frequency=9.714e-01 minor_base=T minor_cov=0/2 new_cov=40/28 polymorphism_frequency=9.714e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=41/31 RA 663 . NC_000913 3099992 0 G A bias_e_value=4641520 bias_p_value=0.999973 consensus_score=333.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.992606 major_base=A major_cov=49/49 major_frequency=9.899e-01 minor_base=G minor_cov=1/0 new_cov=49/49 polymorphism_frequency=9.899e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=51/49 RA 664 . NC_000913 3100526 0 G A consensus_score=182.7 frequency=1 major_base=A major_cov=26/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/35 RA 665 . NC_000913 3113731 0 C T consensus_score=133.2 frequency=1 major_base=T major_cov=28/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/12 RA 666 . NC_000913 3115541 0 G A bias_e_value=3846120 bias_p_value=0.828609 consensus_score=272.5 fisher_strand_p_value=0.475 frequency=1 ks_quality_p_value=1 major_base=A major_cov=37/42 major_frequency=9.875e-01 minor_base=C minor_cov=1/0 new_cov=37/42 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/42 RA 667 . NC_000913 3115607 0 G A bias_e_value=4641630 bias_p_value=0.999995 consensus_score=255.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996847 major_base=A major_cov=38/37 major_frequency=9.868e-01 minor_base=C minor_cov=1/0 new_cov=38/37 polymorphism_frequency=9.868e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/37 RA 668 . NC_000913 3116497 0 G A consensus_score=238.7 frequency=1 major_base=A major_cov=27/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/44 RA 669 . NC_000913 3117082 0 G A consensus_score=229.7 frequency=1 major_base=A major_cov=34/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/34 RA 670 . NC_000913 3118246 0 G A consensus_score=256.4 frequency=1 major_base=A major_cov=44/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/34 RA 671 . NC_000913 3120989 0 G A bias_e_value=3203030 bias_p_value=0.690062 consensus_score=171.0 fisher_strand_p_value=0.324809 frequency=1 ks_quality_p_value=1 major_base=A major_cov=32/25 major_frequency=9.344e-01 minor_base=C minor_cov=1/3 new_cov=32/25 polymorphism_frequency=9.344e-01 polymorphism_score=-6.3 prediction=consensus ref_cov=0/1 total_cov=33/32 RA 672 . NC_000913 3123938 0 G A bias_e_value=1814330 bias_p_value=0.39088 consensus_score=219.8 fisher_strand_p_value=0.127877 frequency=1 ks_quality_p_value=1 major_base=A major_cov=44/23 major_frequency=9.710e-01 minor_base=C minor_cov=0/2 new_cov=44/23 polymorphism_frequency=9.710e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/26 RA 673 . NC_000913 3124449 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=269.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=41/39 major_frequency=9.756e-01 minor_base=C minor_cov=1/1 new_cov=41/39 polymorphism_frequency=9.756e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/41 RA 674 . NC_000913 3125051 0 G A bias_e_value=4176440 bias_p_value=0.899775 consensus_score=235.6 fisher_strand_p_value=0.587116 frequency=1 ks_quality_p_value=1 major_base=A major_cov=40/32 major_frequency=9.600e-01 minor_base=C minor_cov=1/2 new_cov=40/32 polymorphism_frequency=9.600e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/34 RA 675 . NC_000913 3126605 0 G A bias_e_value=3835340 bias_p_value=0.826288 consensus_score=368.7 fisher_strand_p_value=0.472222 frequency=1 ks_quality_p_value=0.999308 major_base=A major_cov=57/50 major_frequency=9.907e-01 minor_base=G minor_cov=0/1 new_cov=57/50 polymorphism_frequency=9.907e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=57/51 RA 676 . NC_000913 3127230 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=294.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=45/44 major_frequency=9.780e-01 minor_base=A minor_cov=1/1 new_cov=45/44 polymorphism_frequency=9.780e-01 polymorphism_score=-6.7 prediction=consensus ref_cov=0/0 total_cov=46/45 RA 677 . NC_000913 3133041 0 G A bias_e_value=4641130 bias_p_value=0.999887 consensus_score=262.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.98499 major_base=A major_cov=42/38 major_frequency=9.877e-01 minor_base=C minor_cov=1/0 new_cov=42/38 polymorphism_frequency=9.877e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/39 RA 678 . NC_000913 3135565 0 G A consensus_score=266.5 frequency=1 major_base=A major_cov=32/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/44 RA 679 . NC_000913 3173797 0 C T consensus_score=280.3 frequency=1 major_base=T major_cov=53/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/30 RA 680 . NC_000913 3191118 0 C T bias_e_value=2698500 bias_p_value=0.581367 consensus_score=67.6 fisher_strand_p_value=0.24 frequency=1 ks_quality_p_value=0.996672 major_base=T major_cov=5/19 major_frequency=9.600e-01 minor_base=G minor_cov=1/0 new_cov=5/19 polymorphism_frequency=9.600e-01 polymorphism_score=-6.0 prediction=consensus ref_cov=0/0 total_cov=6/19 RA 681 . NC_000913 3227310 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=135.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=30/13 major_frequency=9.556e-01 minor_base=C minor_cov=2/0 new_cov=30/13 polymorphism_frequency=9.556e-01 polymorphism_score=-6.3 prediction=consensus ref_cov=0/0 total_cov=32/13 RA 682 . NC_000913 3239627 0 G A bias_e_value=4638910 bias_p_value=0.999409 consensus_score=144.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.965815 major_base=A major_cov=22/23 major_frequency=9.783e-01 minor_base=T minor_cov=1/0 new_cov=22/23 polymorphism_frequency=9.783e-01 polymorphism_score=-6.5 prediction=consensus ref_cov=0/0 total_cov=23/23 RA 683 . NC_000913 3268970 0 A G consensus_score=113.8 frequency=1 major_base=G major_cov=15/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/15 RA 684 . NC_000913 3338426 0 G A bias_e_value=4640950 bias_p_value=0.999849 consensus_score=166.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.982681 major_base=A major_cov=27/26 major_frequency=9.815e-01 minor_base=C minor_cov=1/0 new_cov=27/26 polymorphism_frequency=9.815e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/26 RA 685 . NC_000913 3390054 0 G A bias_e_value=194.238 bias_p_value=4.18467e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=115.8 fisher_strand_p_value=3.05477e-06 frequency=2.131e-01 ks_quality_p_value=1 major_base=G major_cov=34/14 major_frequency=7.869e-01 minor_base=A minor_cov=0/13 new_cov=0/13 polymorphism_frequency=2.131e-01 polymorphism_score=10.2 prediction=polymorphism ref_cov=34/14 total_cov=34/27 RA 686 . NC_000913 3395215 0 G A consensus_score=248.7 frequency=1 major_base=A major_cov=42/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/35 RA 687 . NC_000913 3458698 0 C A bias_e_value=860.337 bias_p_value=0.000185351 consensus_reject=FREQUENCY_CUTOFF consensus_score=98.8 fisher_strand_p_value=1.5337e-05 frequency=2.593e-01 ks_quality_p_value=1 major_base=C major_cov=26/14 major_frequency=7.407e-01 minor_base=A minor_cov=0/14 new_cov=0/14 polymorphism_frequency=2.593e-01 polymorphism_score=10.7 prediction=polymorphism ref_cov=26/14 total_cov=26/28 RA 688 . NC_000913 3486205 0 C A consensus_score=192.5 frequency=1 major_base=A major_cov=27/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/31 RA 689 . NC_000913 3560455 1 . G bias_e_value=4641000 bias_p_value=0.99986 consensus_score=195.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.983306 major_base=G major_cov=27/27 major_frequency=9.818e-01 minor_base=. minor_cov=0/1 new_cov=27/27 polymorphism_frequency=9.818e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/1 total_cov=27/28 RA 690 . NC_000913 3673089 0 G A bias_e_value=0.122422 bias_p_value=2.63747e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=168.8 fisher_strand_p_value=1.2256e-09 frequency=2.346e-01 ks_quality_p_value=1 major_base=G major_cov=47/15 major_frequency=7.654e-01 minor_base=A minor_cov=0/19 new_cov=0/19 polymorphism_frequency=2.346e-01 polymorphism_score=16.8 prediction=polymorphism ref_cov=47/15 total_cov=47/35 RA 691 . NC_000913 3675431 0 C T bias_e_value=0.476818 bias_p_value=1.02726e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=157.8 fisher_strand_p_value=5.1129e-09 frequency=2.308e-01 ks_quality_p_value=1 major_base=C major_cov=11/49 major_frequency=7.692e-01 minor_base=T minor_cov=17/1 new_cov=17/1 polymorphism_frequency=2.308e-01 polymorphism_score=16.1 prediction=polymorphism ref_cov=11/49 total_cov=28/51 RA 692 . NC_000913 3759192 0 G T bias_e_value=0.0414755 bias_p_value=8.9355e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=188.0 fisher_strand_p_value=3.94441e-10 frequency=2.292e-01 ks_quality_p_value=1 major_base=G major_cov=21/53 major_frequency=7.708e-01 minor_base=T minor_cov=22/0 new_cov=22/0 polymorphism_frequency=2.292e-01 polymorphism_score=17.0 prediction=polymorphism ref_cov=21/53 total_cov=45/53 RA 693 . NC_000913 3782932 0 C T bias_e_value=508117 bias_p_value=0.109469 consensus_score=125.6 fisher_strand_p_value=0.0229224 frequency=1 ks_quality_p_value=1 major_base=T major_cov=21/27 major_frequency=9.057e-01 minor_base=G minor_cov=5/0 new_cov=21/27 polymorphism_frequency=9.057e-01 polymorphism_score=-6.2 prediction=consensus ref_cov=4/0 total_cov=30/28 RA 694 . NC_000913 3809561 0 C T consensus_score=286.7 frequency=1 major_base=T major_cov=35/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/51 RA 695 . NC_000913 3813272 0 C T bias_e_value=2206.9 bias_p_value=0.000475456 consensus_reject=FREQUENCY_CUTOFF consensus_score=101.7 fisher_strand_p_value=4.3012e-05 frequency=2.241e-01 ks_quality_p_value=1 major_base=C major_cov=16/29 major_frequency=7.759e-01 minor_base=T minor_cov=13/0 new_cov=13/0 polymorphism_frequency=2.241e-01 polymorphism_score=11.5 prediction=polymorphism ref_cov=16/29 total_cov=30/30 RA 696 . NC_000913 3849102 0 C T consensus_score=414.4 frequency=1 major_base=T major_cov=63/57 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=63/57 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=63/57 RA 697 . NC_000913 3861543 0 C T bias_e_value=2711580 bias_p_value=0.584184 consensus_score=285.9 fisher_strand_p_value=0.241176 frequency=1 ks_quality_p_value=1 major_base=T major_cov=43/40 major_frequency=9.765e-01 minor_base=G minor_cov=0/2 new_cov=43/40 polymorphism_frequency=9.765e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/42 RA 698 . NC_000913 3862227 0 C T consensus_score=243.9 frequency=1 major_base=T major_cov=34/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/38 RA 699 . NC_000913 3865439 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=273.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=35/43 major_frequency=9.873e-01 minor_base=G minor_cov=0/1 new_cov=35/43 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/44 RA 700 . NC_000913 3884604 0 C T consensus_score=202.2 frequency=1 major_base=T major_cov=29/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/30 RA 701 . NC_000913 3884734 0 C T bias_e_value=3854370 bias_p_value=0.830387 consensus_score=219.7 fisher_strand_p_value=0.477612 frequency=1 ks_quality_p_value=0.999548 major_base=T major_cov=35/31 major_frequency=9.851e-01 minor_base=G minor_cov=0/1 new_cov=35/31 polymorphism_frequency=9.851e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/32 RA 702 . NC_000913 3892044 0 C T consensus_score=237.2 frequency=1 major_base=T major_cov=34/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/41 RA 703 . NC_000913 3900687 0 C T consensus_score=113.9 frequency=1 major_base=T major_cov=17/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=17/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/17 RA 704 . NC_000913 3914523 0 C T bias_e_value=2.38964 bias_p_value=5.14825e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=148.6 fisher_strand_p_value=2.88313e-08 frequency=2.029e-01 ks_quality_p_value=0.970919 major_base=C major_cov=11/44 major_frequency=7.971e-01 minor_base=T minor_cov=14/0 new_cov=14/0 polymorphism_frequency=2.029e-01 polymorphism_score=10.1 prediction=polymorphism ref_cov=11/44 total_cov=25/44 RA 705 . NC_000913 3921759 0 C T bias_e_value=3865040 bias_p_value=0.832686 consensus_score=254.5 fisher_strand_p_value=0.480519 frequency=1 ks_quality_p_value=1 major_base=T major_cov=40/36 major_frequency=9.870e-01 minor_base=G minor_cov=0/1 new_cov=40/36 polymorphism_frequency=9.870e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/37 RA 706 . NC_000913 3923235 0 C T bias_e_value=4480350 bias_p_value=0.96525 consensus_score=162.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.748228 major_base=T major_cov=31/20 major_frequency=9.623e-01 minor_base=C minor_cov=1/1 new_cov=31/20 polymorphism_frequency=9.623e-01 polymorphism_score=-1.5 prediction=consensus ref_cov=1/1 total_cov=32/22 RA 707 . NC_000913 3928607 0 C T bias_e_value=3021910 bias_p_value=0.651042 consensus_score=252.3 fisher_strand_p_value=0.291667 frequency=1 ks_quality_p_value=1 major_base=T major_cov=48/30 major_frequency=9.630e-01 minor_base=C minor_cov=3/0 new_cov=48/30 polymorphism_frequency=9.630e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=3/0 total_cov=51/31 RA 708 . NC_000913 3929881 0 C T consensus_score=214.4 frequency=1 major_base=T major_cov=27/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/35 RA 709 . NC_000913 3943846 0 C T bias_e_value=4402780 bias_p_value=0.948537 consensus_score=28.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.696837 major_base=T major_cov=12/11 major_frequency=8.846e-01 minor_base=C minor_cov=1/2 new_cov=12/11 polymorphism_frequency=8.846e-01 polymorphism_score=1.7 prediction=consensus ref_cov=1/2 total_cov=13/13 RA 710 . NC_000913 3950830 0 C T bias_e_value=3420360 bias_p_value=0.736885 consensus_score=358.5 fisher_strand_p_value=0.401786 frequency=1 ks_quality_p_value=0.918418 major_base=T major_cov=67/44 major_frequency=9.911e-01 minor_base=G minor_cov=0/1 new_cov=67/44 polymorphism_frequency=9.911e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=67/45 RA 711 . NC_000913 3958585 0 C T bias_e_value=4641640 bias_p_value=0.999998 consensus_score=313.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998152 major_base=T major_cov=52/40 major_frequency=9.787e-01 minor_base=G minor_cov=1/1 new_cov=52/40 polymorphism_frequency=9.787e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/41 RA 712 . NC_000913 3985672 0 G A bias_e_value=3798710 bias_p_value=0.818395 consensus_score=234.0 fisher_strand_p_value=0.461538 frequency=1 ks_quality_p_value=1 major_base=A major_cov=35/42 major_frequency=9.872e-01 minor_base=G minor_cov=1/0 new_cov=35/42 polymorphism_frequency=9.872e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=36/42 RA 713 . NC_000913 4004371 0 C T consensus_score=90.9 frequency=1 major_base=T major_cov=9/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=9/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=9/21 RA 714 . NC_000913 4012224 0 C T consensus_score=315.3 frequency=1 major_base=T major_cov=41/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/51 RA 715 . NC_000913 4017393 0 C T bias_e_value=3753940 bias_p_value=0.808752 consensus_score=214.3 fisher_strand_p_value=0.454545 frequency=1 ks_quality_p_value=0.988413 major_base=T major_cov=36/29 major_frequency=9.848e-01 minor_base=G minor_cov=0/1 new_cov=36/29 polymorphism_frequency=9.848e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/30 RA 716 . NC_000913 4042505 0 C T bias_e_value=3567020 bias_p_value=0.76848 consensus_score=250.9 fisher_strand_p_value=0.487179 frequency=1 ks_quality_p_value=0.825465 major_base=T major_cov=37/40 major_frequency=9.872e-01 minor_base=. minor_cov=1/0 new_cov=37/40 polymorphism_frequency=9.872e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=0/0 total_cov=38/40 RA 717 . NC_000913 4048632 0 C T consensus_score=210.4 frequency=1 major_base=T major_cov=29/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/35 RA 718 . NC_000913 4056115 0 A C bias_e_value=0.775676 bias_p_value=1.67112e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=122.9 fisher_strand_p_value=8.53524e-09 frequency=2.576e-01 ks_quality_p_value=1 major_base=A major_cov=38/11 major_frequency=7.424e-01 minor_base=C minor_cov=0/17 new_cov=0/17 polymorphism_frequency=2.576e-01 polymorphism_score=11.8 prediction=polymorphism ref_cov=38/11 total_cov=38/30 RA 719 . NC_000913 4060522 0 C T consensus_score=123.7 frequency=1 major_base=T major_cov=20/16 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/16 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/16 RA 720 . NC_000913 4078229 0 C T bias_e_value=3626630 bias_p_value=0.781323 consensus_score=270.9 fisher_strand_p_value=0.419753 frequency=1 ks_quality_p_value=0.992314 major_base=T major_cov=33/47 major_frequency=9.877e-01 minor_base=G minor_cov=1/0 new_cov=33/47 polymorphism_frequency=9.877e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/47 RA 721 . NC_000913 4099855 0 C T bias_e_value=4623420 bias_p_value=0.996071 consensus_score=207.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.912675 major_base=T major_cov=37/28 major_frequency=9.848e-01 minor_base=A minor_cov=1/0 new_cov=37/28 polymorphism_frequency=9.848e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/28 RA 722 . NC_000913 4100529 0 C T bias_e_value=4641620 bias_p_value=0.999994 consensus_score=159.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99646 major_base=T major_cov=18/29 major_frequency=9.792e-01 minor_base=G minor_cov=0/1 new_cov=18/29 polymorphism_frequency=9.792e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/30 RA 723 . NC_000913 4102105 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=142.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=28/18 major_frequency=9.787e-01 minor_base=C minor_cov=1/0 new_cov=28/18 polymorphism_frequency=9.787e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=29/20 RA 724 . NC_000913 4129874 0 C T bias_e_value=4608480 bias_p_value=0.992854 consensus_score=211.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.882855 major_base=T major_cov=29/38 major_frequency=9.710e-01 minor_base=C minor_cov=1/1 new_cov=29/38 polymorphism_frequency=9.710e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=1/1 total_cov=30/39 RA 725 . NC_000913 4146389 1 . T bias_e_value=4641650 bias_p_value=1 consensus_score=264.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99964 major_base=T major_cov=29/45 major_frequency=9.867e-01 minor_base=. minor_cov=0/1 new_cov=29/45 polymorphism_frequency=9.867e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=29/46 RA 726 . NC_000913 4163984 0 C T bias_e_value=4641420 bias_p_value=0.999951 consensus_score=120.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.990083 major_base=T major_cov=16/26 major_frequency=9.767e-01 minor_base=G minor_cov=0/1 new_cov=16/26 polymorphism_frequency=9.767e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/27 RA 727 . NC_000913 4176115 0 G A bias_e_value=1229.87 bias_p_value=0.000264964 consensus_reject=FREQUENCY_CUTOFF consensus_score=123.3 fisher_strand_p_value=2.2656e-05 frequency=2.083e-01 ks_quality_p_value=1 major_base=G major_cov=24/33 major_frequency=7.917e-01 minor_base=A minor_cov=15/0 new_cov=15/0 polymorphism_frequency=2.083e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=24/33 total_cov=40/33 RA 728 . NC_000913 4187918 0 C T consensus_score=382.7 frequency=1 major_base=T major_cov=49/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/59 RA 729 . NC_000913 4192374 0 C T consensus_score=283.7 frequency=1 major_base=T major_cov=51/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/32 RA 730 . NC_000913 4199021 0 C T bias_e_value=4640910 bias_p_value=0.99984 consensus_score=364.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.982191 major_base=T major_cov=49/56 major_frequency=9.906e-01 minor_base=G minor_cov=0/1 new_cov=49/56 polymorphism_frequency=9.906e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/57 RA 731 . NC_000913 4231162 0 G A bias_e_value=3365760 bias_p_value=0.725122 consensus_score=230.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.357393 major_base=A major_cov=34/38 major_frequency=9.863e-01 minor_base=G minor_cov=0/1 new_cov=34/38 polymorphism_frequency=9.863e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=0/1 total_cov=34/41 RA 732 . NC_000913 4232133 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=177.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=30/22 major_frequency=9.811e-01 minor_base=G minor_cov=1/0 new_cov=30/22 polymorphism_frequency=9.811e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/22 RA 733 . NC_000913 4232947 0 G A bias_e_value=4619020 bias_p_value=0.995125 consensus_score=304.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.902899 major_base=A major_cov=28/60 major_frequency=9.888e-01 minor_base=G minor_cov=0/1 new_cov=28/60 polymorphism_frequency=9.888e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=0/1 total_cov=29/61 RA 734 . NC_000913 4233152 0 G A consensus_score=225.5 frequency=1 major_base=A major_cov=30/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/36 RA 735 . NC_000913 4245238 0 G A consensus_score=220.7 frequency=1 major_base=A major_cov=35/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/27 RA 736 . NC_000913 4254504 0 G A bias_e_value=3813510 bias_p_value=0.821585 consensus_score=463.5 fisher_strand_p_value=0.466165 frequency=1 ks_quality_p_value=0.998975 major_base=A major_cov=61/71 major_frequency=9.925e-01 minor_base=C minor_cov=1/0 new_cov=61/71 polymorphism_frequency=9.925e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/71 RA 737 . NC_000913 4256061 0 C T bias_e_value=0.883952 bias_p_value=1.90439e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=72.0 fisher_strand_p_value=9.79557e-09 frequency=3.167e-01 ks_quality_p_value=1 major_base=C major_cov=10/31 major_frequency=6.833e-01 minor_base=T minor_cov=19/0 new_cov=19/0 polymorphism_frequency=3.167e-01 polymorphism_score=20.2 prediction=polymorphism ref_cov=10/31 total_cov=29/31 RA 738 . NC_000913 4264068 0 G A consensus_score=128.9 frequency=1 major_base=A major_cov=3/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=3/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=3/34 RA 739 . NC_000913 4267804 0 G A bias_e_value=4621090 bias_p_value=0.995569 consensus_score=208.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.907354 major_base=A major_cov=38/25 major_frequency=9.844e-01 minor_base=G minor_cov=1/0 new_cov=38/25 polymorphism_frequency=9.844e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=39/25 RA 740 . NC_000913 4269058 0 G A bias_e_value=3420050 bias_p_value=0.736818 consensus_score=114.8 fisher_strand_p_value=0.371429 frequency=1 ks_quality_p_value=0.9933 major_base=A major_cov=12/22 major_frequency=9.714e-01 minor_base=C minor_cov=1/0 new_cov=12/22 polymorphism_frequency=9.714e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/22 RA 741 . NC_000913 4269459 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=96.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=16/15 major_frequency=9.688e-01 minor_base=G minor_cov=0/1 new_cov=16/15 polymorphism_frequency=9.688e-01 polymorphism_score=-6.3 prediction=consensus ref_cov=0/1 total_cov=16/17 RA 742 . NC_000913 4296380 1 . C bias_e_value=3816650 bias_p_value=0.822261 consensus_score=234.5 fisher_strand_p_value=0.471429 frequency=1 ks_quality_p_value=0.989701 major_base=C major_cov=32/37 major_frequency=9.857e-01 minor_base=. minor_cov=1/0 new_cov=32/37 polymorphism_frequency=9.857e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=33/37 RA 743 . NC_000913 4296380 2 . G bias_e_value=3816650 bias_p_value=0.822261 consensus_score=232.6 fisher_strand_p_value=0.471429 frequency=1 ks_quality_p_value=0.989701 major_base=G major_cov=32/37 major_frequency=9.857e-01 minor_base=. minor_cov=1/0 new_cov=32/37 polymorphism_frequency=9.857e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=33/37 RA 744 . NC_000913 4332791 0 A C bias_e_value=8.97349e-05 bias_p_value=1.93325e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=110.6 fisher_strand_p_value=6.65771e-13 frequency=3.143e-01 ks_quality_p_value=1 major_base=A major_cov=44/4 major_frequency=6.857e-01 minor_base=C minor_cov=1/21 new_cov=1/21 polymorphism_frequency=3.143e-01 polymorphism_score=19.5 prediction=polymorphism ref_cov=44/4 total_cov=45/25 RA 745 . NC_000913 4345404 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=243.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=34/40 major_frequency=9.867e-01 minor_base=C minor_cov=0/1 new_cov=34/40 polymorphism_frequency=9.867e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/41 RA 746 . NC_000913 4346287 0 G A consensus_score=290.1 frequency=1 major_base=A major_cov=46/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/39 RA 747 . NC_000913 4349573 0 G A consensus_score=201.0 frequency=1 major_base=A major_cov=31/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/28 RA 748 . NC_000913 4356135 0 C T consensus_score=169.3 frequency=1 major_base=T major_cov=21/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/30 RA 749 . NC_000913 4362225 0 G A bias_e_value=3723510 bias_p_value=0.802196 consensus_score=147.7 fisher_strand_p_value=0.468085 frequency=1 ks_quality_p_value=0.942514 major_base=A major_cov=25/21 major_frequency=9.787e-01 minor_base=T minor_cov=0/1 new_cov=25/21 polymorphism_frequency=9.787e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/0 total_cov=25/22 RA 750 . NC_000913 4363123 0 G A consensus_score=272.2 frequency=1 major_base=A major_cov=36/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/45 RA 751 . NC_000913 4364860 0 G A bias_e_value=3666510 bias_p_value=0.789914 consensus_score=237.7 fisher_strand_p_value=0.426471 frequency=1 ks_quality_p_value=1 major_base=A major_cov=28/39 major_frequency=9.853e-01 minor_base=C minor_cov=1/0 new_cov=28/39 polymorphism_frequency=9.853e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/39 RA 752 . NC_000913 4365662 0 G A consensus_score=242.2 frequency=1 major_base=A major_cov=29/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/40 RA 753 . NC_000913 4367038 0 G A bias_e_value=3777630 bias_p_value=0.813855 consensus_score=239.1 fisher_strand_p_value=0.464789 frequency=1 ks_quality_p_value=0.980475 major_base=A major_cov=38/32 major_frequency=9.859e-01 minor_base=. minor_cov=0/1 new_cov=38/32 polymorphism_frequency=9.859e-01 polymorphism_score=-3.2 prediction=consensus ref_cov=0/0 total_cov=38/33 RA 754 . NC_000913 4372336 0 G A consensus_score=272.4 frequency=1 major_base=A major_cov=41/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/40 RA 755 . NC_000913 4372474 0 G A consensus_score=247.9 frequency=1 major_base=A major_cov=28/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/45 RA 756 . NC_000913 4381728 0 A C bias_e_value=0.000963964 bias_p_value=2.07677e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=138.7 fisher_strand_p_value=7.81475e-12 frequency=2.405e-01 ks_quality_p_value=1 major_base=A major_cov=51/9 major_frequency=7.595e-01 minor_base=C minor_cov=0/19 new_cov=0/19 polymorphism_frequency=2.405e-01 polymorphism_score=11.4 prediction=polymorphism ref_cov=51/9 total_cov=51/29 RA 757 . NC_000913 4395899 0 C T bias_e_value=4122820 bias_p_value=0.888223 consensus_score=226.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.566136 major_base=T major_cov=32/35 major_frequency=9.853e-01 minor_base=G minor_cov=0/1 new_cov=32/35 polymorphism_frequency=9.853e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/0 total_cov=32/36 RA 758 . NC_000913 4397434 0 C T consensus_score=312.2 frequency=1 major_base=T major_cov=54/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/39 RA 759 . NC_000913 4397478 0 C T consensus_score=327.7 frequency=1 major_base=T major_cov=52/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/44 RA 760 . NC_000913 4405925 0 C T consensus_score=227.4 frequency=1 major_base=T major_cov=23/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/45 RA 761 . NC_000913 4417140 0 C T consensus_score=230.0 frequency=1 major_base=T major_cov=35/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/31 RA 762 . NC_000913 4442824 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=176.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999301 major_base=T major_cov=18/35 major_frequency=9.815e-01 minor_base=C minor_cov=0/1 new_cov=18/35 polymorphism_frequency=9.815e-01 polymorphism_score=-6.0 prediction=consensus ref_cov=0/1 total_cov=18/36 RA 763 . NC_000913 4445219 0 C T bias_e_value=3235740 bias_p_value=0.697111 consensus_score=307.2 fisher_strand_p_value=0.340426 frequency=1 ks_quality_p_value=0.972697 major_base=T major_cov=31/62 major_frequency=9.894e-01 minor_base=C minor_cov=1/0 new_cov=31/62 polymorphism_frequency=9.894e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=33/62 RA 764 . NC_000913 4447409 0 C T consensus_score=304.4 frequency=1 major_base=T major_cov=47/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/42 RA 765 . NC_000913 4454328 0 C T bias_e_value=2708230 bias_p_value=0.583462 consensus_score=105.7 fisher_strand_p_value=0.240669 frequency=1 ks_quality_p_value=1 major_base=T major_cov=10/24 major_frequency=9.189e-01 minor_base=G minor_cov=2/1 new_cov=10/24 polymorphism_frequency=9.189e-01 polymorphism_score=-5.9 prediction=consensus ref_cov=1/1 total_cov=13/26 RA 766 . NC_000913 4456542 0 C T bias_e_value=3913770 bias_p_value=0.843185 consensus_score=342.7 fisher_strand_p_value=0.495146 frequency=1 ks_quality_p_value=1 major_base=T major_cov=52/50 major_frequency=9.903e-01 minor_base=G minor_cov=0/1 new_cov=52/50 polymorphism_frequency=9.903e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/51 RA 767 . NC_000913 4472059 0 C T bias_e_value=4633940 bias_p_value=0.998339 consensus_score=298.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.942917 major_base=T major_cov=34/53 major_frequency=9.886e-01 minor_base=C minor_cov=0/1 new_cov=34/53 polymorphism_frequency=9.886e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=35/54 RA 768 . NC_000913 4486822 0 C T consensus_score=329.9 frequency=1 major_base=T major_cov=46/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/49 RA 769 . NC_000913 4492537 0 C T bias_e_value=4640930 bias_p_value=0.999845 consensus_score=141.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.982437 major_base=T major_cov=21/21 major_frequency=9.767e-01 minor_base=. minor_cov=1/0 new_cov=21/21 polymorphism_frequency=9.767e-01 polymorphism_score=-3.0 prediction=consensus ref_cov=0/0 total_cov=22/21 RA 770 . NC_000913 4493716 0 C T bias_e_value=3734700 bias_p_value=0.804606 consensus_score=180.2 fisher_strand_p_value=0.444444 frequency=1 ks_quality_p_value=0.999301 major_base=T major_cov=30/23 major_frequency=9.815e-01 minor_base=G minor_cov=0/1 new_cov=30/23 polymorphism_frequency=9.815e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/24 RA 771 . NC_000913 4509072 0 C T consensus_score=211.6 frequency=1 major_base=T major_cov=36/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/28 RA 772 . NC_000913 4510361 0 C T consensus_score=157.1 frequency=1 major_base=T major_cov=24/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/27 RA 773 . NC_000913 4510711 0 C T consensus_score=176.6 frequency=1 major_base=T major_cov=25/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/27 RA 774 . NC_000913 4515901 0 C T consensus_score=427.7 frequency=1 major_base=T major_cov=77/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=77/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=77/48 RA 775 . NC_000913 4517868 0 C T consensus_score=271.0 frequency=1 major_base=T major_cov=38/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/42 RA 776 . NC_000913 4519033 0 C T bias_e_value=4641520 bias_p_value=0.999972 consensus_score=217.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.992569 major_base=T major_cov=25/40 major_frequency=9.848e-01 minor_base=C minor_cov=0/1 new_cov=25/40 polymorphism_frequency=9.848e-01 polymorphism_score=-6.5 prediction=consensus ref_cov=0/1 total_cov=25/41 RA 777 . NC_000913 4521873 0 C T bias_e_value=3905050 bias_p_value=0.841305 consensus_score=185.3 fisher_strand_p_value=0.492481 frequency=1 ks_quality_p_value=1 major_base=T major_cov=27/28 major_frequency=9.649e-01 minor_base=G minor_cov=0/2 new_cov=27/28 polymorphism_frequency=9.649e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/30 RA 778 . NC_000913 4524922 0 G A consensus_score=166.2 frequency=1 major_base=A major_cov=20/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/30 RA 779 . NC_000913 4525090 0 G A consensus_score=143.9 frequency=1 major_base=A major_cov=24/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/20 RA 780 . NC_000913 4529317 0 C T consensus_score=215.9 frequency=1 major_base=T major_cov=31/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/32 RA 781 . NC_000913 4542683 0 T . bias_e_value=3334110 bias_p_value=0.718302 consensus_score=160.8 fisher_strand_p_value=0.351351 frequency=1 ks_quality_p_value=0.9985 major_base=. major_cov=24/12 major_frequency=9.730e-01 minor_base=T minor_cov=0/1 new_cov=24/12 polymorphism_frequency=9.730e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/1 total_cov=24/13 RA 782 . NC_000913 4552055 0 C T consensus_score=287.3 frequency=1 major_base=T major_cov=45/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/40 RA 783 . NC_000913 4552344 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=291.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=40/43 major_frequency=9.881e-01 minor_base=G minor_cov=0/1 new_cov=40/43 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/44 RA 784 . NC_000913 4560376 0 C T consensus_score=203.8 frequency=1 major_base=T major_cov=30/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/33 RA 785 . NC_000913 4566967 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=231.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=34/34 major_frequency=9.855e-01 minor_base=G minor_cov=0/1 new_cov=34/34 polymorphism_frequency=9.855e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/35 RA 786 . NC_000913 4574257 0 G A consensus_score=140.2 frequency=1 major_base=A major_cov=23/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/18 RA 787 . NC_000913 4579530 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=92.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=22/10 major_frequency=9.412e-01 minor_base=C minor_cov=1/1 new_cov=22/10 polymorphism_frequency=9.412e-01 polymorphism_score=-2.9 prediction=consensus ref_cov=1/1 total_cov=23/11 RA 788 . NC_000913 4604344 0 C T bias_e_value=7.44066 bias_p_value=1.60302e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=65.8 fisher_strand_p_value=9.32648e-08 frequency=3.095e-01 ks_quality_p_value=1 major_base=C major_cov=4/25 major_frequency=6.905e-01 minor_base=T minor_cov=13/0 new_cov=13/0 polymorphism_frequency=3.095e-01 polymorphism_score=10.9 prediction=polymorphism ref_cov=4/25 total_cov=18/25 RA 789 . NC_000913 4604350 0 C T bias_e_value=1.14458 bias_p_value=2.4659e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=57.3 fisher_strand_p_value=1.28641e-08 frequency=3.333e-01 ks_quality_p_value=1 major_base=C major_cov=3/25 major_frequency=6.667e-01 minor_base=T minor_cov=14/0 new_cov=14/0 polymorphism_frequency=3.333e-01 polymorphism_score=12.9 prediction=polymorphism ref_cov=3/25 total_cov=18/25 MC 790 . NC_000913 257908 258683 767 0 left_inside_cov=0 left_outside_cov=41 right_inside_cov=3 right_outside_cov=44 MC 791 . NC_000913 1196259 1211514 0 0 left_inside_cov=8 left_outside_cov=9 right_inside_cov=8 right_outside_cov=9 MC 792 . NC_000913 1294035 1294175 0 0 left_inside_cov=0 left_outside_cov=48 right_inside_cov=2 right_outside_cov=50 MC 793 . NC_000913 1299499 1300697 1198 0 left_inside_cov=0 left_outside_cov=20 right_inside_cov=0 right_outside_cov=20 MC 794 . NC_000913 1978495 1979270 0 767 left_inside_cov=0 left_outside_cov=45 right_inside_cov=0 right_outside_cov=34 MC 795 . NC_000913 2558699 2565488 0 0 left_inside_cov=0 left_outside_cov=80 right_inside_cov=6 right_outside_cov=86 MC 796 . NC_000913 3682261 3682294 0 0 left_inside_cov=0 left_outside_cov=59 right_inside_cov=0 right_outside_cov=57 MC 797 . NC_000913 4549192 4549230 0 0 left_inside_cov=0 left_outside_cov=56 right_inside_cov=3 right_outside_cov=58 JC 798 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 coverage_minus=11 coverage_plus=13 flanking_left=251 flanking_right=251 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=241 key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0 max_left=244 max_left_minus=244 max_left_plus=240 max_min_left=100 max_min_left_minus=73 max_min_left_plus=100 max_min_right=124 max_min_right_minus=115 max_min_right_plus=124 max_pos_hash_score=484 max_right=237 max_right_minus=227 max_right_plus=237 neg_log10_pos_hash_p_value=1.5 new_junction_coverage=0.39 new_junction_read_count=25 polymorphism_frequency=1.000e+00 pos_hash_score=24 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=241 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=241 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=24 JC 799 . NC_000913 57276 1 NC_000913 382590 -1 0 alignment_overlap=0 coverage_minus=22 coverage_plus=24 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__57276__1__NC_000913__382590__-1__0____251__251__0__1 max_left=249 max_left_minus=249 max_left_plus=227 max_min_left=125 max_min_left_minus=113 max_min_left_plus=125 max_min_right=122 max_min_right_minus=108 max_min_right_plus=122 max_pos_hash_score=484 max_right=239 max_right_minus=239 max_right_plus=239 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.76 new_junction_read_count=48 polymorphism_frequency=1.000e+00 pos_hash_score=46 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=236 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=46 JC 800 . NC_000913 57280 -1 NC_000913 381260 1 0 alignment_overlap=0 coverage_minus=33 coverage_plus=21 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__57280__-1__NC_000913__381260__1__0____251__251__0__1 max_left=247 max_left_minus=247 max_left_plus=239 max_min_left=116 max_min_left_minus=116 max_min_left_plus=116 max_min_right=106 max_min_right_minus=106 max_min_right_plus=104 max_pos_hash_score=484 max_right=248 max_right_minus=248 max_right_plus=247 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.88 new_junction_read_count=56 polymorphism_frequency=1.000e+00 pos_hash_score=54 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=236 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=54 JC 801 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=23 coverage_plus=18 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=233 key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0 max_left=238 max_left_minus=232 max_left_plus=238 max_min_left=120 max_min_left_minus=120 max_min_left_plus=112 max_min_right=118 max_min_right_minus=112 max_min_right_plus=118 max_pos_hash_score=468 max_right=241 max_right_minus=223 max_right_plus=241 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.67 new_junction_read_count=41 polymorphism_frequency=1.000e+00 pos_hash_score=39 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=241 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=233 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=41 JC 802 . NC_000913 279163 1 NC_000913 2666074 1 0 alignment_overlap=0 coverage_minus=39 coverage_plus=44 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__279163__1__NC_000913__2666074__1__0____251__251__1__0 max_left=245 max_left_minus=245 max_left_plus=238 max_min_left=118 max_min_left_minus=105 max_min_left_plus=118 max_min_right=121 max_min_right_minus=121 max_min_right_plus=121 max_pos_hash_score=484 max_right=250 max_right_minus=246 max_right_plus=250 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.34 new_junction_read_count=85 polymorphism_frequency=1.000e+00 pos_hash_score=76 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=232 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=83 JC 803 . NC_000913 291401 -1 NC_000913 2666082 -1 0 alignment_overlap=1 coverage_minus=39 coverage_plus=27 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__291402__-1__NC_000913__2666082__-1__1____251__251__1__0 max_left=249 max_left_minus=241 max_left_plus=249 max_min_left=118 max_min_left_minus=113 max_min_left_plus=118 max_min_right=123 max_min_right_minus=123 max_min_right_plus=116 max_pos_hash_score=482 max_right=241 max_right_minus=241 max_right_plus=240 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.04 new_junction_read_count=66 polymorphism_frequency=1.000e+00 pos_hash_score=59 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=1 side_2_possible_overlap_registers=232 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=66 JC 804 . NC_000913 381260 1 NC_000913 382183 -1 0 alignment_overlap=0 coverage_minus=36 coverage_plus=32 flanking_left=251 flanking_right=251 frequency=NA junction_possible_overlap_registers=241 key=NC_000913__381260__1__NC_000913__382183__-1__0____251__251__1__1 max_left=248 max_left_minus=248 max_left_plus=240 max_min_left=122 max_min_left_minus=122 max_min_left_plus=119 max_min_right=122 max_min_right_minus=122 max_min_right_plus=122 max_pos_hash_score=484 max_right=250 max_right_minus=245 max_right_plus=250 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.09 new_junction_read_count=69 polymorphism_frequency=NA pos_hash_score=61 prediction=unknown side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=68 JC 805 . NC_000913 381260 1 NC_000913 1105376 1 0 alignment_overlap=1 coverage_minus=8 coverage_plus=27 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__381260__1__NC_000913__1105375__1__1____251__251__1__0 max_left=240 max_left_minus=240 max_left_plus=236 max_min_left=120 max_min_left_minus=99 max_min_left_plus=120 max_min_right=124 max_min_right_minus=85 max_min_right_plus=124 max_pos_hash_score=482 max_right=226 max_right_minus=170 max_right_plus=226 neg_log10_pos_hash_p_value=0.9 new_junction_coverage=0.57 new_junction_read_count=36 polymorphism_frequency=1.000e+00 pos_hash_score=33 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=235 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=35 JC 806 . NC_000913 382179 1 NC_000913 382590 -1 0 alignment_overlap=2 coverage_minus=28 coverage_plus=29 flanking_left=251 flanking_right=251 frequency=NA junction_possible_overlap_registers=239 key=NC_000913__382177__1__NC_000913__382590__-1__2____251__251__1__1 max_left=242 max_left_minus=242 max_left_plus=242 max_min_left=115 max_min_left_minus=115 max_min_left_plus=101 max_min_right=113 max_min_right_minus=113 max_min_right_plus=98 max_pos_hash_score=480 max_right=246 max_right_minus=246 max_right_plus=229 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.92 new_junction_read_count=58 polymorphism_frequency=NA pos_hash_score=51 prediction=unknown side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=2 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=57 JC 807 . NC_000913 566774 -1 NC_000913 568036 1 0 alignment_overlap=2 coverage_minus=10 coverage_plus=6 flanking_left=251 flanking_right=251 frequency=3.096e-01 junction_possible_overlap_registers=239 key=NC_000913__566774__-1__NC_000913__568034__1__2____251__251__0__0 max_left=234 max_left_minus=234 max_left_plus=225 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=114 max_min_right_minus=114 max_min_right_plus=111 max_pos_hash_score=480 max_right=114 max_right_minus=114 max_right_plus=111 neg_log10_pos_hash_p_value=2.2 new_junction_coverage=0.40 new_junction_read_count=25 polymorphism_frequency=3.096e-01 pos_hash_score=16 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.91 side_1_overlap=2 side_1_possible_overlap_registers=241 side_1_read_count=58 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.86 side_2_overlap=0 side_2_possible_overlap_registers=239 side_2_read_count=54 side_2_redundant=0 total_non_overlap_reads=16 JC 808 . NC_000913 568449 1 NC_000913 1469240 -1 0 alignment_overlap=0 coverage_minus=36 coverage_plus=18 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__568449__1__NC_000913__1469240__-1__0____251__251__0__1 max_left=246 max_left_minus=246 max_left_plus=218 max_min_left=121 max_min_left_minus=121 max_min_left_plus=113 max_min_right=113 max_min_right_minus=100 max_min_right_plus=113 max_pos_hash_score=484 max_right=248 max_right_minus=248 max_right_plus=240 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.91 new_junction_read_count=58 polymorphism_frequency=1.000e+00 pos_hash_score=52 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=236 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=54 JC 809 . NC_000913 568453 -1 NC_000913 1467910 1 0 alignment_overlap=1 coverage_minus=28 coverage_plus=29 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__568454__-1__NC_000913__1467910__1__1____251__251__0__1 max_left=239 max_left_minus=238 max_left_plus=239 max_min_left=123 max_min_left_minus=123 max_min_left_plus=119 max_min_right=115 max_min_right_minus=115 max_min_right_plus=112 max_pos_hash_score=482 max_right=245 max_right_minus=245 max_right_plus=235 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.92 new_junction_read_count=58 polymorphism_frequency=1.000e+00 pos_hash_score=55 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=235 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=57 JC 810 . NC_000913 1105380 -1 NC_000913 1467910 1 0 alignment_overlap=0 coverage_minus=23 coverage_plus=14 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__1105380__-1__NC_000913__1467910__1__0____251__251__0__1 max_left=249 max_left_minus=242 max_left_plus=249 max_min_left=116 max_min_left_minus=113 max_min_left_plus=116 max_min_right=125 max_min_right_minus=112 max_min_right_plus=125 max_pos_hash_score=484 max_right=234 max_right_minus=234 max_right_plus=225 neg_log10_pos_hash_p_value=0.7 new_junction_coverage=0.61 new_junction_read_count=39 polymorphism_frequency=1.000e+00 pos_hash_score=37 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=236 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=37 JC 811 . NC_000913 1294034 -1 NC_000913 1294176 1 0 alignment_overlap=10 coverage_minus=24 coverage_plus=22 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=231 key=NC_000913__1294034__-1__NC_000913__1294166__1__10____251__251__0__0 max_left=240 max_left_minus=220 max_left_plus=240 max_min_left=114 max_min_left_minus=114 max_min_left_plus=113 max_min_right=111 max_min_right_minus=111 max_min_right_plus=71 max_pos_hash_score=464 max_right=229 max_right_minus=228 max_right_plus=229 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.79 new_junction_read_count=48 polymorphism_frequency=1.000e+00 pos_hash_score=41 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=10 side_1_possible_overlap_registers=241 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=231 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=46 JC 812 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=10 coverage_plus=10 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=237 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0 max_left=242 max_left_minus=242 max_left_plus=241 max_min_left=119 max_min_left_minus=119 max_min_left_plus=111 max_min_right=112 max_min_right_minus=80 max_min_right_plus=112 max_pos_hash_score=476 max_right=246 max_right_minus=215 max_right_plus=246 neg_log10_pos_hash_p_value=1.8 new_junction_coverage=0.32 new_junction_read_count=20 polymorphism_frequency=1.000e+00 pos_hash_score=20 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=241 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=237 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=20 JC 813 . NC_000913 1303072 -1 NC_000913 1303085 1 0 alignment_overlap=1 coverage_minus=12 coverage_plus=23 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__1303072__-1__NC_000913__1303084__1__1____251__251__0__0 max_left=246 max_left_minus=158 max_left_plus=246 max_min_left=114 max_min_left_minus=113 max_min_left_plus=114 max_min_right=120 max_min_right_minus=120 max_min_right_plus=113 max_pos_hash_score=482 max_right=237 max_right_minus=234 max_right_plus=237 neg_log10_pos_hash_p_value=0.9 new_junction_coverage=0.57 new_junction_read_count=36 polymorphism_frequency=9.730e-01 pos_hash_score=34 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=1 side_1_possible_overlap_registers=241 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=35 JC 814 . NC_000913 1397238 -1 NC_000913 1978494 -1 0 alignment_overlap=0 coverage_minus=23 coverage_plus=21 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____251__251__1__0 max_left=230 max_left_minus=230 max_left_plus=227 max_min_left=125 max_min_left_minus=117 max_min_left_plus=125 max_min_right=102 max_min_right_minus=102 max_min_right_plus=102 max_pos_hash_score=484 max_right=232 max_right_minus=232 max_right_plus=220 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.71 new_junction_read_count=45 polymorphism_frequency=1.000e+00 pos_hash_score=40 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=241 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=44 JC 815 . NC_000913 1438363 1 NC_000913 1438856 1 0 alignment_overlap=9 coverage_minus=2 coverage_plus=1 flanking_left=251 flanking_right=251 frequency=5.084e-02 junction_possible_overlap_registers=232 key=NC_000913__1438363__1__NC_000913__1438847__1__9____251__251__0__0 max_left=241 max_left_minus=241 max_left_plus=121 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=39 max_min_right_minus=39 max_min_right_plus=39 max_pos_hash_score=466 max_right=39 max_right_minus=39 max_right_plus=39 neg_log10_pos_hash_p_value=5.0 new_junction_coverage=0.05 new_junction_read_count=3 polymorphism_frequency=5.084e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.83 side_1_overlap=9 side_1_possible_overlap_registers=241 side_1_read_count=53 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.00 side_2_overlap=0 side_2_possible_overlap_registers=232 side_2_read_count=61 side_2_redundant=0 total_non_overlap_reads=3 JC 816 . NC_000913 1469240 -1 NC_000913 1792772 1 0 alignment_overlap=2 coverage_minus=32 coverage_plus=18 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=239 key=NC_000913__1469240__-1__NC_000913__1792770__1__2____251__251__1__0 max_left=242 max_left_minus=242 max_left_plus=230 max_min_left=116 max_min_left_minus=116 max_min_left_plus=114 max_min_right=120 max_min_right_minus=110 max_min_right_plus=120 max_pos_hash_score=480 max_right=247 max_right_minus=247 max_right_plus=201 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.79 new_junction_read_count=50 polymorphism_frequency=1.000e+00 pos_hash_score=50 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=234 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=50 JC 817 . NC_000913 1651548 -1 NC_000913 1792776 -1 0 alignment_overlap=0 coverage_minus=13 coverage_plus=21 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__1651548__-1__NC_000913__1792776__-1__0____251__251__1__0 max_left=245 max_left_minus=245 max_left_plus=241 max_min_left=121 max_min_left_minus=46 max_min_left_plus=121 max_min_right=122 max_min_right_minus=97 max_min_right_plus=122 max_pos_hash_score=484 max_right=248 max_right_minus=248 max_right_plus=233 neg_log10_pos_hash_p_value=0.9 new_junction_coverage=0.55 new_junction_read_count=35 polymorphism_frequency=1.000e+00 pos_hash_score=33 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=236 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=34 JC 818 . NC_000913 1978503 1 NC_000913 2406787 -1 0 alignment_overlap=1 coverage_minus=25 coverage_plus=34 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__1978503__1__NC_000913__2406788__-1__1____251__251__1__0 max_left=245 max_left_minus=229 max_left_plus=245 max_min_left=123 max_min_left_minus=117 max_min_left_plus=123 max_min_right=124 max_min_right_minus=124 max_min_right_plus=117 max_pos_hash_score=482 max_right=248 max_right_minus=248 max_right_plus=231 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.96 new_junction_read_count=61 polymorphism_frequency=1.000e+00 pos_hash_score=57 prediction=consensus read_count_offset=8 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=232 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=59 JC 819 . NC_000913 1979270 -1 NC_000913 2406780 1 0 alignment_overlap=0 coverage_minus=15 coverage_plus=34 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__1979270__-1__NC_000913__2406780__1__0____251__251__1__0 max_left=249 max_left_minus=244 max_left_plus=249 max_min_left=124 max_min_left_minus=120 max_min_left_plus=124 max_min_right=122 max_min_right_minus=93 max_min_right_plus=122 max_pos_hash_score=484 max_right=247 max_right_minus=244 max_right_plus=247 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.79 new_junction_read_count=50 polymorphism_frequency=1.000e+00 pos_hash_score=46 prediction=consensus read_count_offset=8 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=233 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=49 JC 820 . NC_000913 1979271 1 NC_000913 2102947 -1 0 alignment_overlap=0 coverage_minus=17 coverage_plus=16 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__1979271__1__NC_000913__2102947__-1__0____251__251__0__1 max_left=247 max_left_minus=247 max_left_plus=194 max_min_left=109 max_min_left_minus=100 max_min_left_plus=109 max_min_right=112 max_min_right_minus=81 max_min_right_plus=112 max_pos_hash_score=484 max_right=241 max_right_minus=241 max_right_plus=234 neg_log10_pos_hash_p_value=1.0 new_junction_coverage=0.53 new_junction_read_count=34 polymorphism_frequency=1.000e+00 pos_hash_score=31 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=241 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=33 JC 821 . NC_000913 2068941 1 NC_000913 2319850 1 0 alignment_overlap=0 coverage_minus=33 coverage_plus=43 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__2068941__1__NC_000913__2319850__1__0____251__251__1__0 max_left=250 max_left_minus=245 max_left_plus=250 max_min_left=121 max_min_left_minus=121 max_min_left_plus=106 max_min_right=125 max_min_right_minus=113 max_min_right_plus=125 max_pos_hash_score=484 max_right=247 max_right_minus=247 max_right_plus=244 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.20 new_junction_read_count=76 polymorphism_frequency=9.867e-01 pos_hash_score=70 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=236 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=76 JC 822 . NC_000913 2269876 1 NC_000913 2288919 1 0 alignment_overlap=1 coverage_minus=25 coverage_plus=24 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__2269875__1__NC_000913__2288919__1__1____251__251__0__1 max_left=249 max_left_minus=226 max_left_plus=249 max_min_left=114 max_min_left_minus=114 max_min_left_plus=109 max_min_right=119 max_min_right_minus=119 max_min_right_plus=101 max_pos_hash_score=482 max_right=245 max_right_minus=245 max_right_plus=225 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.81 new_junction_read_count=51 polymorphism_frequency=1.000e+00 pos_hash_score=46 prediction=consensus read_count_offset=4 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=236 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=49 JC 823 . NC_000913 2269879 -1 NC_000913 2290113 -1 0 alignment_overlap=0 coverage_minus=22 coverage_plus=11 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__2269879__-1__NC_000913__2290113__-1__0____251__251__0__1 max_left=244 max_left_minus=197 max_left_plus=244 max_min_left=124 max_min_left_minus=119 max_min_left_plus=124 max_min_right=109 max_min_right_minus=89 max_min_right_plus=109 max_pos_hash_score=484 max_right=249 max_right_minus=249 max_right_plus=243 neg_log10_pos_hash_p_value=1.0 new_junction_coverage=0.55 new_junction_read_count=35 polymorphism_frequency=1.000e+00 pos_hash_score=31 prediction=consensus read_count_offset=4 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=237 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=33 JC 824 . NC_000913 2288919 1 NC_000913 4536236 1 0 alignment_overlap=1 coverage_minus=15 coverage_plus=24 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__2288919__1__NC_000913__4536235__1__1____251__251__1__0 max_left=241 max_left_minus=241 max_left_plus=240 max_min_left=120 max_min_left_minus=120 max_min_left_plus=106 max_min_right=125 max_min_right_minus=114 max_min_right_plus=125 max_pos_hash_score=482 max_right=245 max_right_minus=243 max_right_plus=245 neg_log10_pos_hash_p_value=0.7 new_junction_coverage=0.62 new_junction_read_count=39 polymorphism_frequency=1.000e+00 pos_hash_score=37 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=236 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=39 JC 825 . NC_000913 2290113 -1 NC_000913 4536239 -1 0 alignment_overlap=0 coverage_minus=12 coverage_plus=13 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__2290113__-1__NC_000913__4536239__-1__0____251__251__1__0 max_left=240 max_left_minus=202 max_left_plus=240 max_min_left=121 max_min_left_minus=121 max_min_left_plus=0 max_min_right=110 max_min_right_minus=110 max_min_right_plus=49 max_pos_hash_score=484 max_right=227 max_right_minus=227 max_right_plus=49 neg_log10_pos_hash_p_value=1.7 new_junction_coverage=0.41 new_junction_read_count=26 polymorphism_frequency=1.000e+00 pos_hash_score=21 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=237 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=25 JC 826 . NC_000913 2319854 -1 NC_000913 2997691 -1 0 alignment_overlap=0 coverage_minus=31 coverage_plus=26 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__2319854__-1__NC_000913__2997691__-1__0____251__251__0__1 max_left=244 max_left_minus=244 max_left_plus=229 max_min_left=124 max_min_left_minus=124 max_min_left_plus=115 max_min_right=121 max_min_right_minus=121 max_min_right_plus=90 max_pos_hash_score=484 max_right=238 max_right_minus=238 max_right_plus=238 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.90 new_junction_read_count=57 polymorphism_frequency=9.824e-01 pos_hash_score=52 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=236 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=57 JC 827 . NC_000913 2558698 -1 NC_000913 2565489 1 0 alignment_overlap=8 coverage_minus=48 coverage_plus=27 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=233 key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0 max_left=241 max_left_minus=241 max_left_plus=223 max_min_left=119 max_min_left_minus=119 max_min_left_plus=117 max_min_right=121 max_min_right_minus=121 max_min_right_plus=88 max_pos_hash_score=468 max_right=235 max_right_minus=233 max_right_plus=235 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.29 new_junction_read_count=79 polymorphism_frequency=1.000e+00 pos_hash_score=71 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=241 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=233 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=75 JC 828 . NC_000913 3187426 -1 NC_000913 3737137 1 0 alignment_overlap=1 coverage_minus=33 coverage_plus=43 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__3187426__-1__NC_000913__3737136__1__1____251__251__1__0 max_left=244 max_left_minus=244 max_left_plus=233 max_min_left=121 max_min_left_minus=115 max_min_left_plus=121 max_min_right=123 max_min_right_minus=123 max_min_right_plus=122 max_pos_hash_score=482 max_right=238 max_right_minus=238 max_right_plus=232 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.22 new_junction_read_count=77 polymorphism_frequency=1.000e+00 pos_hash_score=76 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=235 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=76 JC 829 . NC_000913 3682260 -1 NC_000913 3682295 1 0 alignment_overlap=2 coverage_minus=31 coverage_plus=25 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=239 key=NC_000913__3682260__-1__NC_000913__3682293__1__2____251__251__0__0 max_left=246 max_left_minus=246 max_left_plus=223 max_min_left=124 max_min_left_minus=124 max_min_left_plus=90 max_min_right=122 max_min_right_minus=108 max_min_right_plus=122 max_pos_hash_score=480 max_right=244 max_right_minus=244 max_right_plus=244 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.90 new_junction_read_count=57 polymorphism_frequency=1.000e+00 pos_hash_score=55 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=2 side_1_possible_overlap_registers=241 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=239 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=56 JC 830 . NC_000913 3737141 -1 NC_000913 4498181 1 0 alignment_overlap=0 coverage_minus=34 coverage_plus=25 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__3737141__-1__NC_000913__4498181__1__0____251__251__0__1 max_left=249 max_left_minus=240 max_left_plus=249 max_min_left=118 max_min_left_minus=117 max_min_left_plus=118 max_min_right=113 max_min_right_minus=113 max_min_right_plus=92 max_pos_hash_score=484 max_right=244 max_right_minus=234 max_right_plus=244 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.96 new_junction_read_count=61 polymorphism_frequency=9.676e-01 pos_hash_score=54 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.03 side_1_overlap=0 side_1_possible_overlap_registers=236 side_1_read_count=2 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=59 JC 831 . NC_000913 4123923 1 NC_000913 4498181 1 0 alignment_overlap=1 coverage_minus=37 coverage_plus=34 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__4123922__1__NC_000913__4498181__1__1____251__251__0__1 max_left=239 max_left_minus=239 max_left_plus=225 max_min_left=118 max_min_left_minus=117 max_min_left_plus=118 max_min_right=118 max_min_right_minus=104 max_min_right_plus=118 max_pos_hash_score=482 max_right=245 max_right_minus=241 max_right_plus=245 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.14 new_junction_read_count=72 polymorphism_frequency=1.000e+00 pos_hash_score=69 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=235 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=71 JC 832 . NC_000913 4123927 -1 NC_000913 4499511 -1 0 alignment_overlap=1 coverage_minus=27 coverage_plus=33 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____251__251__0__1 max_left=243 max_left_minus=233 max_left_plus=243 max_min_left=118 max_min_left_minus=118 max_min_left_plus=108 max_min_right=117 max_min_right_minus=96 max_min_right_plus=117 max_pos_hash_score=482 max_right=241 max_right_minus=241 max_right_plus=238 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.95 new_junction_read_count=60 polymorphism_frequency=9.671e-01 pos_hash_score=58 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.03 side_1_overlap=0 side_1_possible_overlap_registers=235 side_1_read_count=2 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=60 JC 833 . NC_000913 4135180 1 NC_000913 4498181 1 0 alignment_overlap=0 coverage_minus=37 coverage_plus=37 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__4135180__1__NC_000913__4498181__1__0____251__251__0__1 max_left=250 max_left_minus=245 max_left_plus=250 max_min_left=125 max_min_left_minus=114 max_min_left_plus=125 max_min_right=121 max_min_right_minus=121 max_min_right_plus=102 max_pos_hash_score=484 max_right=249 max_right_minus=232 max_right_plus=249 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.20 new_junction_read_count=76 polymorphism_frequency=1.000e+00 pos_hash_score=70 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=236 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=74 JC 834 . NC_000913 4135184 -1 NC_000913 4499511 -1 0 alignment_overlap=0 coverage_minus=36 coverage_plus=32 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=241 key=NC_000913__4135184__-1__NC_000913__4499511__-1__0____251__251__0__1 max_left=246 max_left_minus=242 max_left_plus=246 max_min_left=118 max_min_left_minus=113 max_min_left_plus=118 max_min_right=125 max_min_right_minus=108 max_min_right_plus=125 max_pos_hash_score=484 max_right=246 max_right_minus=246 max_right_plus=244 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.07 new_junction_read_count=68 polymorphism_frequency=1.000e+00 pos_hash_score=67 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=236 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=68 JC 835 . NC_000913 4542682 1 NC_000913 4542996 1 0 alignment_overlap=9 coverage_minus=2 coverage_plus=2 flanking_left=251 flanking_right=251 frequency=8.938e-02 junction_possible_overlap_registers=232 key=NC_000913__4542682__1__NC_000913__4542987__1__9____251__251__0__0 max_left=144 max_left_minus=144 max_left_plus=126 max_min_left=53 max_min_left_minus=16 max_min_left_plus=53 max_min_right=116 max_min_right_minus=97 max_min_right_plus=116 max_pos_hash_score=466 max_right=225 max_right_minus=225 max_right_plus=188 neg_log10_pos_hash_p_value=4.6 new_junction_coverage=0.07 new_junction_read_count=4 polymorphism_frequency=8.938e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.63 side_1_overlap=9 side_1_possible_overlap_registers=241 side_1_read_count=40 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.70 side_2_overlap=0 side_2_possible_overlap_registers=232 side_2_read_count=43 side_2_redundant=0 total_non_overlap_reads=4 JC 836 . NC_000913 4549191 -1 NC_000913 4549231 1 0 alignment_overlap=2 coverage_minus=27 coverage_plus=26 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=239 key=NC_000913__4549191__-1__NC_000913__4549229__1__2____251__251__0__0 max_left=247 max_left_minus=228 max_left_plus=247 max_min_left=123 max_min_left_minus=95 max_min_left_plus=123 max_min_right=124 max_min_right_minus=124 max_min_right_plus=113 max_pos_hash_score=480 max_right=245 max_right_minus=245 max_right_plus=243 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.87 new_junction_read_count=55 polymorphism_frequency=1.000e+00 pos_hash_score=52 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=2 side_1_possible_overlap_registers=241 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=239 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=53 UN 837 . 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