#=GENOME_DIFF	1.0
#=CREATED	13:18:06 19 Dec 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20241218run12/IH198_S7_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20241218run12/IH198_S7_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20241218run12/IH198_S7_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20241218run12/IH198_S7_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20241218run12/IH198_S7_L001_R2_001.fastq.gz
#=CONVERTED-BASES	197711913
#=CONVERTED-READS	804824
#=INPUT-BASES	197713567
#=INPUT-READS	804862
#=MAPPED-BASES	180963301
#=MAPPED-READS	739372
MOB	1	475,476	NC_000913	57276	IS2	1	5
SNP	2	134	NC_000913	71134	A
DEL	3	466,477	NC_000913	257908	776
SNP	4	135	NC_000913	400937	T
SNP	5	136	NC_000913	557635	T
MOB	6	486,487	NC_000913	568449	IS2	-1	5
SNP	7	204	NC_000913	631633	A
SNP	8	205	NC_000913	987152	T
MOB	9	482,488	NC_000913	1105376	IS2	-1	5
SNP	10	206	NC_000913	1196220	T
SNP	11	207	NC_000913	1196232	T
SNP	12	208	NC_000913	1196245	C
SNP	13	209	NC_000913	1196247	G
SNP	14	210	NC_000913	1196277	T
SNP	15	211	NC_000913	1196280	C
SNP	16	212	NC_000913	1196283	G
SNP	17	213	NC_000913	1196292	T
SNP	18	214	NC_000913	1196304	A
SNP	19	215	NC_000913	1196316	A
SNP	20	216	NC_000913	1196325	G
SNP	21	217	NC_000913	1196352	A
SNP	22	218	NC_000913	1290881	T
DEL	23	468,489	NC_000913	1294035	141
DEL	24	469,490	NC_000913	1299499	1199
DEL	25	491	NC_000913	1303073	12
SNP	26	219	NC_000913	1337394	G
SNP	27	220	NC_000913	1352193	A
SNP	28	221	NC_000913	1353758	A
SNP	29	222	NC_000913	1355904	T
SNP	30	223	NC_000913	1357473	T
SNP	31	224	NC_000913	1362803	T
SNP	32	225	NC_000913	1366985	T
SNP	33	226	NC_000913	1382845	T
SNP	34	344	NC_000913	1440381	A
DEL	35	345	NC_000913	1494388	1
SNP	36	346	NC_000913	1517508	T
SNP	37	347	NC_000913	1541357	T
SNP	38	348	NC_000913	1543636	T
SNP	39	349	NC_000913	1547154	T
SNP	40	350	NC_000913	1551766	T
SNP	41	351	NC_000913	1552228	A
SNP	42	352	NC_000913	1556181	T
SNP	43	353	NC_000913	1565918	A
SNP	44	354	NC_000913	1566497	A
SNP	45	355	NC_000913	1567076	A
SNP	46	356	NC_000913	1567651	A
SNP	47	357	NC_000913	1568442	A
SNP	48	358	NC_000913	1569555	A
SNP	49	359	NC_000913	1579410	A
SNP	50	360	NC_000913	1583650	A
SNP	51	361	NC_000913	1585196	A
SNP	52	362	NC_000913	1589830	C
SNP	53	389	NC_000913	1652331	C
DEL	54	390	NC_000913	1667887	1
DEL	55	391	NC_000913	1744751	1
MOB	56	493,494	NC_000913	1792772	IS2	-1	5
MOB	57	478,495	NC_000913	1907615	IS1	1	9
SNP	58	392	NC_000913	1978243	T
SNP	59	393	NC_000913	2003264	T
SNP	60	394	NC_000913	2032423	A
SNP	61	395	NC_000913	2095057	A
DEL	62	396,397	NC_000913	2173363	2
SNP	63	398	NC_000913	2242121	G
MOB	64	500,501	NC_000913	2269876	IS5	1	4
MOB	65	499,504	NC_000913	2319850	IS2	1	5
SNP	66	399	NC_000913	2342582	T
SNP	67	400	NC_000913	2397444	A
MOB	68	496,497	NC_000913	2406780	IS1	-1	8
DEL	69	471,505	NC_000913	2558699	6790
MOB	70	479,480	NC_000913	2666074	IS1	1	9
SNP	71	401	NC_000913	3102348	A
SNP	72	402	NC_000913	3199005	A
SNP	73	403	NC_000913	3247458	T
SNP	74	404	NC_000913	3268970	G
SNP	75	405	NC_000913	3308736	T
SNP	76	406	NC_000913	3324164	T
SNP	77	407	NC_000913	3355173	T
SNP	78	408	NC_000913	3410690	T
SNP	79	409	NC_000913	3450107	T
SNP	80	410	NC_000913	3486205	A
SNP	81	411	NC_000913	3491417	T
SNP	82	412	NC_000913	3496203	G
SNP	83	413	NC_000913	3524603	T
SNP	84	414	NC_000913	3528272	T
INS	85	415	NC_000913	3560455	G
SNP	86	416	NC_000913	3615427	T
SNP	87	417	NC_000913	3631349	T
SNP	88	418	NC_000913	3651423	T
SNP	89	419	NC_000913	3657207	T
SNP	90	420	NC_000913	3673046	T
DEL	91	473,509	NC_000913	3682261	34
SNP	92	421	NC_000913	3722654	T
MOB	93	507,510	NC_000913	3737137	IS2	1	5
SNP	94	422	NC_000913	3745917	T
SNP	95	423	NC_000913	3749174	T
SNP	96	424	NC_000913	3758605	T
SNP	97	425	NC_000913	3771296	T
SNP	98	427	NC_000913	3799622	T
SNP	99	428	NC_000913	3805424	T
SNP	100	430	NC_000913	3828128	T
SNP	101	431	NC_000913	3832051	T
SNP	102	432	NC_000913	3838773	T
SNP	103	433	NC_000913	3844413	T
SNP	104	434	NC_000913	3884712	T
SNP	105	435	NC_000913	3897890	T
SNP	106	436	NC_000913	3909886	A
SNP	107	437	NC_000913	3913050	A
SNP	108	438	NC_000913	3996126	A
SNP	109	439	NC_000913	3997278	A
SNP	110	440	NC_000913	4012789	A
SNP	111	441	NC_000913	4016990	A
SNP	112	442	NC_000913	4032219	A
SNP	113	443	NC_000913	4034217	A
SNP	114	444	NC_000913	4053512	A
SNP	115	445	NC_000913	4055224	A
SNP	116	446	NC_000913	4065293	A
SNP	117	447	NC_000913	4068287	A
SNP	118	448	NC_000913	4084595	A
SNP	119	449	NC_000913	4085928	A
SNP	120	450	NC_000913	4091821	A
SNP	121	451	NC_000913	4096215	A
SNP	122	452	NC_000913	4097175	A
SNP	123	453	NC_000913	4099805	T
SNP	124	454	NC_000913	4115968	A
MOB	125	511,512	NC_000913	4123923	IS2	-1	5
SNP	126	455	NC_000913	4132970	A
MOB	127	513,514	NC_000913	4135180	IS2	-1	5
INS	128	456	NC_000913	4146389	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	129	459	NC_000913	4163609	A
SNP	130	462	NC_000913	4295679	A
INS	131	463,464	NC_000913	4296381	GC
MOB	132	502,503	NC_000913	4536236	IS5	1	4
DEL	133	465	NC_000913	4542683	1
RA	134	.	NC_000913	71134	0	G	A	consensus_score=116.6	frequency=1	major_base=A	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	135	.	NC_000913	400937	0	C	T	consensus_score=136.0	frequency=1	major_base=T	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	136	.	NC_000913	557635	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=159.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999075	major_base=T	major_cov=20/26	major_frequency=9.787e-01	minor_base=G	minor_cov=0/1	new_cov=20/26	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	137	.	NC_000913	566173	0	C	G	bias_e_value=1495300	bias_p_value=0.322147	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.6	fisher_strand_p_value=0.137928	frequency=2.857e-01	ks_quality_p_value=0.699673	major_base=C	major_cov=23/17	major_frequency=7.143e-01	minor_base=G	minor_cov=5/11	new_cov=5/11	polymorphism_frequency=2.857e-01	polymorphism_score=50.0	prediction=polymorphism	ref_cov=23/17	total_cov=28/28
RA	138	.	NC_000913	566205	0	T	C	bias_e_value=1488660	bias_p_value=0.320718	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.6	fisher_strand_p_value=0.143165	frequency=2.667e-01	ks_quality_p_value=0.669812	major_base=T	major_cov=25/19	major_frequency=7.333e-01	minor_base=C	minor_cov=5/11	new_cov=5/11	polymorphism_frequency=2.667e-01	polymorphism_score=37.9	prediction=polymorphism	ref_cov=25/19	total_cov=30/30
RA	139	.	NC_000913	566245	0	G	A	bias_e_value=561746	bias_p_value=0.121023	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.1	fisher_strand_p_value=0.03877	frequency=2.239e-01	ks_quality_p_value=0.671553	major_base=G	major_cov=31/21	major_frequency=7.761e-01	minor_base=A	minor_cov=4/11	new_cov=4/11	polymorphism_frequency=2.239e-01	polymorphism_score=29.4	prediction=polymorphism	ref_cov=31/21	total_cov=36/32
RA	140	.	NC_000913	566277	0	C	T	bias_e_value=704684	bias_p_value=0.151818	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.7	fisher_strand_p_value=0.155152	frequency=2.254e-01	ks_quality_p_value=0.224592	major_base=C	major_cov=30/25	major_frequency=7.746e-01	minor_base=T	minor_cov=5/11	new_cov=5/11	polymorphism_frequency=2.254e-01	polymorphism_score=37.7	prediction=polymorphism	ref_cov=30/25	total_cov=35/36
RA	141	.	NC_000913	566492	0	G	T	bias_e_value=4472240	bias_p_value=0.963501	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.2	fisher_strand_p_value=0.773863	frequency=2.500e-01	ks_quality_p_value=0.959189	major_base=G	major_cov=21/27	major_frequency=7.500e-01	minor_base=T	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.500e-01	polymorphism_score=33.4	prediction=polymorphism	ref_cov=21/27	total_cov=27/37
RA	142	.	NC_000913	566493	0	G	A	bias_e_value=4506150	bias_p_value=0.970806	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.6	fisher_strand_p_value=0.776655	frequency=2.540e-01	ks_quality_p_value=0.989251	major_base=G	major_cov=20/27	major_frequency=7.460e-01	minor_base=A	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.540e-01	polymorphism_score=35.5	prediction=polymorphism	ref_cov=20/27	total_cov=27/37
RA	143	.	NC_000913	566498	0	C	T	bias_e_value=4447140	bias_p_value=0.958095	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.1	fisher_strand_p_value=1	frequency=2.344e-01	ks_quality_p_value=0.724835	major_base=C	major_cov=21/28	major_frequency=7.656e-01	minor_base=T	minor_cov=6/9	new_cov=6/9	polymorphism_frequency=2.344e-01	polymorphism_score=36.2	prediction=polymorphism	ref_cov=21/28	total_cov=27/38
RA	144	.	NC_000913	566510	0	G	C	bias_e_value=4622920	bias_p_value=0.995964	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.1	fisher_strand_p_value=1	frequency=2.419e-01	ks_quality_p_value=0.911507	major_base=G	major_cov=21/26	major_frequency=7.581e-01	minor_base=C	minor_cov=6/9	new_cov=6/9	polymorphism_frequency=2.419e-01	polymorphism_score=36.6	prediction=polymorphism	ref_cov=21/26	total_cov=27/36
RA	145	.	NC_000913	566513	0	C	T	bias_e_value=4412590	bias_p_value=0.95065	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.5	fisher_strand_p_value=0.771825	frequency=2.500e-01	ks_quality_p_value=0.91051	major_base=C	major_cov=22/26	major_frequency=7.500e-01	minor_base=T	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.500e-01	polymorphism_score=32.7	prediction=polymorphism	ref_cov=22/26	total_cov=28/36
RA	146	.	NC_000913	566519	0	T	C	bias_e_value=4513450	bias_p_value=0.97238	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.4	fisher_strand_p_value=0.774366	frequency=2.424e-01	ks_quality_p_value=1	major_base=T	major_cov=22/28	major_frequency=7.576e-01	minor_base=C	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.424e-01	polymorphism_score=31.9	prediction=polymorphism	ref_cov=22/28	total_cov=28/38
RA	147	.	NC_000913	566522	0	C	A	bias_e_value=4417700	bias_p_value=0.951751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.7	fisher_strand_p_value=0.772703	frequency=2.462e-01	ks_quality_p_value=0.913544	major_base=C	major_cov=22/27	major_frequency=7.538e-01	minor_base=A	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.462e-01	polymorphism_score=34.2	prediction=polymorphism	ref_cov=22/27	total_cov=28/37
RA	148	.	NC_000913	566528	0	A	G	bias_e_value=2205470	bias_p_value=0.475148	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.5	fisher_strand_p_value=0.771825	frequency=2.500e-01	ks_quality_p_value=0.22313	major_base=A	major_cov=22/26	major_frequency=7.500e-01	minor_base=G	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.500e-01	polymorphism_score=35.5	prediction=polymorphism	ref_cov=22/26	total_cov=28/36
RA	149	.	NC_000913	566530	1	.	T	bias_e_value=3224770	bias_p_value=0.694747	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.2	fisher_strand_p_value=0.775391	frequency=2.344e-01	ks_quality_p_value=0.424301	major_base=.	major_cov=22/27	major_frequency=7.656e-01	minor_base=T	minor_cov=6/9	new_cov=6/9	polymorphism_frequency=2.344e-01	polymorphism_score=70.7	prediction=polymorphism	ref_cov=22/27	total_cov=28/36
RA	150	.	NC_000913	566532	0	A	T	bias_e_value=3239980	bias_p_value=0.698024	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.1	fisher_strand_p_value=0.771825	frequency=2.500e-01	ks_quality_p_value=0.430095	major_base=A	major_cov=22/26	major_frequency=7.500e-01	minor_base=T	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.500e-01	polymorphism_score=39.6	prediction=polymorphism	ref_cov=22/26	total_cov=28/36
RA	151	.	NC_000913	566535	0	T	.	bias_e_value=3989410	bias_p_value=0.85948	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.1	fisher_strand_p_value=0.572173	frequency=2.540e-01	ks_quality_p_value=0.907316	major_base=T	major_cov=22/25	major_frequency=7.460e-01	minor_base=.	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.540e-01	polymorphism_score=56.3	prediction=polymorphism	ref_cov=22/25	total_cov=28/35
RA	152	.	NC_000913	566536	0	G	A	bias_e_value=3867750	bias_p_value=0.83327	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.7	fisher_strand_p_value=0.572173	frequency=2.540e-01	ks_quality_p_value=0.841209	major_base=G	major_cov=22/25	major_frequency=7.460e-01	minor_base=A	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.540e-01	polymorphism_score=36.2	prediction=polymorphism	ref_cov=22/25	total_cov=28/35
RA	153	.	NC_000913	566543	0	A	T	bias_e_value=4300660	bias_p_value=0.926535	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.8	fisher_strand_p_value=0.783356	frequency=2.698e-01	ks_quality_p_value=0.819615	major_base=A	major_cov=21/25	major_frequency=7.302e-01	minor_base=T	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=2.698e-01	polymorphism_score=45.8	prediction=polymorphism	ref_cov=21/25	total_cov=28/35
RA	154	.	NC_000913	566547	0	C	A	bias_e_value=753430	bias_p_value=0.162319	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.0	fisher_strand_p_value=0.783356	frequency=2.698e-01	ks_quality_p_value=0.0485299	major_base=C	major_cov=21/25	major_frequency=7.302e-01	minor_base=A	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=2.698e-01	polymorphism_score=41.7	prediction=polymorphism	ref_cov=21/25	total_cov=28/35
RA	155	.	NC_000913	566565	0	A	G	bias_e_value=4519080	bias_p_value=0.973593	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.8	fisher_strand_p_value=0.789819	frequency=2.879e-01	ks_quality_p_value=0.986518	major_base=A	major_cov=22/25	major_frequency=7.121e-01	minor_base=G	minor_cov=8/11	new_cov=8/11	polymorphism_frequency=2.879e-01	polymorphism_score=47.9	prediction=polymorphism	ref_cov=22/25	total_cov=30/37
RA	156	.	NC_000913	566570	0	A	C	bias_e_value=4534120	bias_p_value=0.976834	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.1	fisher_strand_p_value=0.792621	frequency=2.899e-01	ks_quality_p_value=1	major_base=A	major_cov=22/27	major_frequency=7.101e-01	minor_base=C	minor_cov=8/12	new_cov=8/12	polymorphism_frequency=2.899e-01	polymorphism_score=52.0	prediction=polymorphism	ref_cov=22/27	total_cov=30/39
RA	157	.	NC_000913	566597	0	T	C	bias_e_value=3105520	bias_p_value=0.669055	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.5	fisher_strand_p_value=0.311811	frequency=3.380e-01	ks_quality_p_value=0.98326	major_base=T	major_cov=23/24	major_frequency=6.620e-01	minor_base=C	minor_cov=8/16	new_cov=8/16	polymorphism_frequency=3.380e-01	polymorphism_score=67.0	prediction=polymorphism	ref_cov=23/24	total_cov=31/40
RA	158	.	NC_000913	566651	0	T	C	bias_e_value=4618240	bias_p_value=0.994955	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.9	fisher_strand_p_value=1	frequency=3.857e-01	ks_quality_p_value=0.901248	major_base=T	major_cov=20/23	major_frequency=6.143e-01	minor_base=C	minor_cov=13/14	new_cov=13/14	polymorphism_frequency=3.857e-01	polymorphism_score=80.0	prediction=polymorphism	ref_cov=20/23	total_cov=33/38
RA	159	.	NC_000913	566728	0	G	T	bias_e_value=1127940	bias_p_value=0.243004	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.3	fisher_strand_p_value=0.761038	frequency=2.800e-01	ks_quality_p_value=0.0855707	major_base=G	major_cov=20/16	major_frequency=7.200e-01	minor_base=T	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=2.800e-01	polymorphism_score=38.6	prediction=polymorphism	ref_cov=20/16	total_cov=27/23
RA	160	.	NC_000913	566740	0	A	G	bias_e_value=4034670	bias_p_value=0.869232	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.4	fisher_strand_p_value=0.534354	frequency=2.800e-01	ks_quality_p_value=1	major_base=A	major_cov=22/14	major_frequency=7.200e-01	minor_base=G	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=2.800e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=22/14	total_cov=29/21
RA	161	.	NC_000913	566742	0	A	C	bias_e_value=4034670	bias_p_value=0.869232	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.4	fisher_strand_p_value=0.534354	frequency=2.800e-01	ks_quality_p_value=1	major_base=A	major_cov=22/14	major_frequency=7.200e-01	minor_base=C	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=2.800e-01	polymorphism_score=29.4	prediction=polymorphism	ref_cov=22/14	total_cov=29/21
RA	162	.	NC_000913	566756	0	G	C	bias_e_value=4640910	bias_p_value=0.999841	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.4	fisher_strand_p_value=1	frequency=3.137e-01	ks_quality_p_value=0.982233	major_base=G	major_cov=20/15	major_frequency=6.863e-01	minor_base=C	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=3.137e-01	polymorphism_score=42.7	prediction=polymorphism	ref_cov=20/15	total_cov=29/22
RA	163	.	NC_000913	566770	0	C	A	bias_e_value=2607940	bias_p_value=0.561855	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.5	fisher_strand_p_value=0.516067	frequency=2.708e-01	ks_quality_p_value=0.437593	major_base=C	major_cov=21/14	major_frequency=7.292e-01	minor_base=A	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.708e-01	polymorphism_score=36.1	prediction=polymorphism	ref_cov=21/14	total_cov=27/21
RA	164	.	NC_000913	568052	0	T	C	bias_e_value=4291340	bias_p_value=0.924529	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.8	fisher_strand_p_value=1	frequency=2.791e-01	ks_quality_p_value=0.637556	major_base=T	major_cov=16/15	major_frequency=7.209e-01	minor_base=C	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=2.791e-01	polymorphism_score=26.9	prediction=polymorphism	ref_cov=16/15	total_cov=22/21
RA	165	.	NC_000913	578331	0	G	T	bias_e_value=4106270	bias_p_value=0.884658	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.4	fisher_strand_p_value=0.61123	frequency=3.636e-01	ks_quality_p_value=0.91607	major_base=G	major_cov=21/21	major_frequency=6.364e-01	minor_base=T	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=3.636e-01	polymorphism_score=56.5	prediction=polymorphism	ref_cov=21/21	total_cov=31/35
RA	166	.	NC_000913	578427	0	G	C	bias_e_value=2264870	bias_p_value=0.487945	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.7	fisher_strand_p_value=0.491886	frequency=5.333e-01	ks_quality_p_value=0.365087	major_base=C	major_cov=17/23	major_frequency=5.333e-01	minor_base=G	minor_cov=18/17	new_cov=17/23	polymorphism_frequency=5.333e-01	polymorphism_score=128.6	prediction=polymorphism	ref_cov=18/17	total_cov=35/40
RA	167	.	NC_000913	578571	0	C	T	bias_e_value=1505940	bias_p_value=0.32444	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.2	fisher_strand_p_value=0.544378	frequency=6.444e-01	ks_quality_p_value=0.17908	major_base=T	major_cov=15/14	major_frequency=6.444e-01	minor_base=C	minor_cov=10/6	new_cov=15/14	polymorphism_frequency=6.444e-01	polymorphism_score=44.4	prediction=polymorphism	ref_cov=10/6	total_cov=25/20
RA	168	.	NC_000913	578574	0	A	C	bias_e_value=4138960	bias_p_value=0.891699	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.1	fisher_strand_p_value=0.752969	frequency=6.364e-01	ks_quality_p_value=0.760066	major_base=C	major_cov=15/13	major_frequency=6.364e-01	minor_base=A	minor_cov=10/6	new_cov=15/13	polymorphism_frequency=6.364e-01	polymorphism_score=37.1	prediction=polymorphism	ref_cov=10/6	total_cov=25/20
RA	169	.	NC_000913	578605	0	T	G	bias_e_value=2849800	bias_p_value=0.613963	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.8	fisher_strand_p_value=0.533644	frequency=6.444e-01	ks_quality_p_value=0.492417	major_base=G	major_cov=18/11	major_frequency=6.444e-01	minor_base=T	minor_cov=8/8	new_cov=18/11	polymorphism_frequency=6.444e-01	polymorphism_score=43.0	prediction=polymorphism	ref_cov=8/8	total_cov=26/19
RA	170	.	NC_000913	578729	0	A	G	bias_e_value=111543	bias_p_value=0.0240309	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.5	fisher_strand_p_value=0.0173697	frequency=5.000e-01	ks_quality_p_value=0.209043	major_base=G	major_cov=16/7	major_frequency=5.000e-01	minor_base=A	minor_cov=7/16	new_cov=16/7	polymorphism_frequency=5.000e-01	polymorphism_score=64.3	prediction=polymorphism	ref_cov=7/16	total_cov=23/23
RA	171	.	NC_000913	578809	0	T	C	bias_e_value=1939640	bias_p_value=0.417877	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.9	fisher_strand_p_value=0.155113	frequency=4.600e-01	ks_quality_p_value=0.911183	major_base=T	major_cov=10/17	major_frequency=5.400e-01	minor_base=C	minor_cov=14/9	new_cov=14/9	polymorphism_frequency=4.600e-01	polymorphism_score=65.6	prediction=polymorphism	ref_cov=10/17	total_cov=24/26
RA	172	.	NC_000913	578811	0	T	G	bias_e_value=1397660	bias_p_value=0.301112	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.6	fisher_strand_p_value=0.0876856	frequency=4.490e-01	ks_quality_p_value=1	major_base=T	major_cov=10/17	major_frequency=5.510e-01	minor_base=G	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=4.490e-01	polymorphism_score=51.5	prediction=polymorphism	ref_cov=10/17	total_cov=24/25
RA	173	.	NC_000913	578831	0	T	C	bias_e_value=4105500	bias_p_value=0.884491	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.7	fisher_strand_p_value=0.559643	frequency=4.167e-01	ks_quality_p_value=1	major_base=T	major_cov=11/17	major_frequency=5.833e-01	minor_base=C	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=4.167e-01	polymorphism_score=54.8	prediction=polymorphism	ref_cov=11/17	total_cov=21/27
RA	174	.	NC_000913	579004	0	C	T	bias_e_value=1602990	bias_p_value=0.345349	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.8	fisher_strand_p_value=0.106648	frequency=5.818e-01	ks_quality_p_value=1	major_base=T	major_cov=12/20	major_frequency=5.818e-01	minor_base=C	minor_cov=14/9	new_cov=12/20	polymorphism_frequency=5.818e-01	polymorphism_score=60.9	prediction=polymorphism	ref_cov=14/9	total_cov=26/29
RA	175	.	NC_000913	579099	0	A	.	bias_e_value=158529	bias_p_value=0.0341537	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.0	fisher_strand_p_value=0.165527	frequency=5.849e-01	ks_quality_p_value=0.0332704	major_base=.	major_cov=13/18	major_frequency=5.849e-01	minor_base=A	minor_cov=14/8	new_cov=13/18	polymorphism_frequency=5.849e-01	polymorphism_score=111.2	prediction=polymorphism	ref_cov=14/8	total_cov=27/26
RA	176	.	NC_000913	579127	0	T	C	bias_e_value=1171620	bias_p_value=0.252414	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.7	fisher_strand_p_value=0.171674	frequency=5.370e-01	ks_quality_p_value=0.3996	major_base=C	major_cov=11/18	major_frequency=5.370e-01	minor_base=T	minor_cov=15/10	new_cov=11/18	polymorphism_frequency=5.370e-01	polymorphism_score=73.0	prediction=polymorphism	ref_cov=15/10	total_cov=26/28
RA	177	.	NC_000913	579134	0	T	C	bias_e_value=90616.6	bias_p_value=0.0195225	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.4	fisher_strand_p_value=0.172787	frequency=5.283e-01	ks_quality_p_value=0.0164649	major_base=C	major_cov=11/17	major_frequency=5.283e-01	minor_base=T	minor_cov=15/10	new_cov=11/17	polymorphism_frequency=5.283e-01	polymorphism_score=72.1	prediction=polymorphism	ref_cov=15/10	total_cov=26/27
RA	178	.	NC_000913	579146	0	A	G	bias_e_value=3209390	bias_p_value=0.691434	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.5	fisher_strand_p_value=0.385159	frequency=5.000e-01	ks_quality_p_value=0.846482	major_base=A	major_cov=13/11	major_frequency=5.000e-01	minor_base=G	minor_cov=9/15	new_cov=9/15	polymorphism_frequency=5.000e-01	polymorphism_score=62.2	prediction=polymorphism	ref_cov=13/11	total_cov=23/26
RA	179	.	NC_000913	579271	0	G	A	bias_e_value=4634750	bias_p_value=0.998513	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.8	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.945959	major_base=A	major_cov=8/10	major_frequency=5.000e-01	minor_base=G	minor_cov=7/11	new_cov=8/10	polymorphism_frequency=5.000e-01	polymorphism_score=48.9	prediction=polymorphism	ref_cov=7/11	total_cov=15/21
RA	180	.	NC_000913	579285	0	T	C	bias_e_value=4313560	bias_p_value=0.929315	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.2	fisher_strand_p_value=0.752708	frequency=4.524e-01	ks_quality_p_value=0.861416	major_base=T	major_cov=8/15	major_frequency=5.476e-01	minor_base=C	minor_cov=8/11	new_cov=8/11	polymorphism_frequency=4.524e-01	polymorphism_score=52.7	prediction=polymorphism	ref_cov=8/15	total_cov=16/26
RA	181	.	NC_000913	579385	0	A	G	bias_e_value=4492390	bias_p_value=0.967843	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.3	fisher_strand_p_value=0.757361	frequency=3.778e-01	ks_quality_p_value=1	major_base=A	major_cov=11/17	major_frequency=6.222e-01	minor_base=G	minor_cov=8/9	new_cov=8/9	polymorphism_frequency=3.778e-01	polymorphism_score=42.4	prediction=polymorphism	ref_cov=11/17	total_cov=19/26
RA	182	.	NC_000913	579457	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.7	fisher_strand_p_value=1	frequency=4.528e-01	ks_quality_p_value=1	major_base=A	major_cov=15/14	major_frequency=5.472e-01	minor_base=G	minor_cov=12/12	new_cov=12/12	polymorphism_frequency=4.528e-01	polymorphism_score=71.5	prediction=polymorphism	ref_cov=15/14	total_cov=27/26
RA	183	.	NC_000913	579502	0	A	G	bias_e_value=4076600	bias_p_value=0.878265	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.8	fisher_strand_p_value=0.55031	frequency=4.444e-01	ks_quality_p_value=0.99778	major_base=A	major_cov=12/13	major_frequency=5.556e-01	minor_base=G	minor_cov=12/8	new_cov=12/8	polymorphism_frequency=4.444e-01	polymorphism_score=53.3	prediction=polymorphism	ref_cov=12/13	total_cov=24/22
RA	184	.	NC_000913	579540	0	T	C	bias_e_value=3859780	bias_p_value=0.831554	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.4	fisher_strand_p_value=0.751186	frequency=5.000e-01	ks_quality_p_value=0.637628	major_base=C	major_cov=10/10	major_frequency=5.000e-01	minor_base=T	minor_cov=12/8	new_cov=10/10	polymorphism_frequency=5.000e-01	polymorphism_score=56.7	prediction=polymorphism	ref_cov=12/8	total_cov=22/18
RA	185	.	NC_000913	579651	0	C	T	bias_e_value=3959960	bias_p_value=0.853136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.7	fisher_strand_p_value=0.5096	frequency=5.588e-01	ks_quality_p_value=1	major_base=T	major_cov=9/10	major_frequency=5.588e-01	minor_base=C	minor_cov=9/6	new_cov=9/10	polymorphism_frequency=5.588e-01	polymorphism_score=36.0	prediction=polymorphism	ref_cov=9/6	total_cov=19/16
RA	186	.	NC_000913	579671	0	T	C	bias_e_value=3421910	bias_p_value=0.737219	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.8	fisher_strand_p_value=0.462137	frequency=5.517e-01	ks_quality_p_value=0.799205	major_base=C	major_cov=7/9	major_frequency=5.517e-01	minor_base=T	minor_cov=8/5	new_cov=7/9	polymorphism_frequency=5.517e-01	polymorphism_score=32.3	prediction=polymorphism	ref_cov=8/5	total_cov=15/15
RA	187	.	NC_000913	579717	0	A	C	bias_e_value=4372700	bias_p_value=0.942058	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.0	fisher_strand_p_value=0.710382	frequency=6.000e-01	ks_quality_p_value=0.956529	major_base=C	major_cov=10/8	major_frequency=6.000e-01	minor_base=A	minor_cov=5/7	new_cov=10/8	polymorphism_frequency=6.000e-01	polymorphism_score=27.4	prediction=polymorphism	ref_cov=5/7	total_cov=15/15
RA	188	.	NC_000913	579811	0	C	T	bias_e_value=4599820	bias_p_value=0.990988	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.2	fisher_strand_p_value=1	frequency=6.500e-01	ks_quality_p_value=0.868785	major_base=T	major_cov=16/10	major_frequency=6.500e-01	minor_base=C	minor_cov=9/5	new_cov=16/10	polymorphism_frequency=6.500e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=9/5	total_cov=25/15
RA	189	.	NC_000913	580020	0	G	A	bias_e_value=4163460	bias_p_value=0.896978	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.9	fisher_strand_p_value=0.593212	frequency=4.909e-01	ks_quality_p_value=0.980944	major_base=G	major_cov=15/13	major_frequency=5.091e-01	minor_base=A	minor_cov=12/15	new_cov=12/15	polymorphism_frequency=4.909e-01	polymorphism_score=73.1	prediction=polymorphism	ref_cov=15/13	total_cov=27/28
RA	190	.	NC_000913	580115	0	C	T	bias_e_value=2708630	bias_p_value=0.583549	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.6	fisher_strand_p_value=0.24866	frequency=4.375e-01	ks_quality_p_value=0.968112	major_base=C	major_cov=14/13	major_frequency=5.625e-01	minor_base=T	minor_cov=7/14	new_cov=7/14	polymorphism_frequency=4.375e-01	polymorphism_score=53.7	prediction=polymorphism	ref_cov=14/13	total_cov=21/27
RA	191	.	NC_000913	580119	0	A	G	bias_e_value=1597660	bias_p_value=0.344201	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.7	fisher_strand_p_value=0.231782	frequency=4.130e-01	ks_quality_p_value=0.45791	major_base=A	major_cov=14/13	major_frequency=5.870e-01	minor_base=G	minor_cov=6/13	new_cov=6/13	polymorphism_frequency=4.130e-01	polymorphism_score=52.4	prediction=polymorphism	ref_cov=14/13	total_cov=20/26
RA	192	.	NC_000913	580120	0	C	T	bias_e_value=3321320	bias_p_value=0.715546	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.5	fisher_strand_p_value=0.358674	frequency=4.000e-01	ks_quality_p_value=0.970805	major_base=C	major_cov=14/13	major_frequency=6.000e-01	minor_base=T	minor_cov=6/12	new_cov=6/12	polymorphism_frequency=4.000e-01	polymorphism_score=49.8	prediction=polymorphism	ref_cov=14/13	total_cov=20/26
RA	193	.	NC_000913	580302	0	C	T	bias_e_value=4271910	bias_p_value=0.920342	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.0	fisher_strand_p_value=0.798129	frequency=5.484e-01	ks_quality_p_value=0.787345	major_base=T	major_cov=20/14	major_frequency=5.484e-01	minor_base=C	minor_cov=15/13	new_cov=20/14	polymorphism_frequency=5.484e-01	polymorphism_score=79.1	prediction=polymorphism	ref_cov=15/13	total_cov=35/27
RA	194	.	NC_000913	580437	0	A	C	bias_e_value=4013800	bias_p_value=0.864735	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.1	fisher_strand_p_value=0.527254	frequency=4.615e-01	ks_quality_p_value=1	major_base=A	major_cov=9/12	major_frequency=5.385e-01	minor_base=C	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=4.615e-01	polymorphism_score=46.3	prediction=polymorphism	ref_cov=9/12	total_cov=19/20
RA	195	.	NC_000913	580830	0	T	A	bias_e_value=4373540	bias_p_value=0.942237	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.7	fisher_strand_p_value=1	frequency=4.286e-01	ks_quality_p_value=0.679965	major_base=T	major_cov=12/8	major_frequency=5.714e-01	minor_base=A	minor_cov=9/6	new_cov=9/6	polymorphism_frequency=4.286e-01	polymorphism_score=48.0	prediction=polymorphism	ref_cov=12/8	total_cov=21/14
RA	196	.	NC_000913	580831	0	G	A	bias_e_value=4637510	bias_p_value=0.999107	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.7	fisher_strand_p_value=1	frequency=4.286e-01	ks_quality_p_value=0.958048	major_base=G	major_cov=12/8	major_frequency=5.714e-01	minor_base=A	minor_cov=9/6	new_cov=9/6	polymorphism_frequency=4.286e-01	polymorphism_score=38.4	prediction=polymorphism	ref_cov=12/8	total_cov=21/14
RA	197	.	NC_000913	581042	0	T	G	bias_e_value=4248800	bias_p_value=0.915363	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.3	fisher_strand_p_value=0.771162	frequency=4.815e-01	ks_quality_p_value=0.801226	major_base=T	major_cov=20/8	major_frequency=5.185e-01	minor_base=G	minor_cov=17/9	new_cov=17/9	polymorphism_frequency=4.815e-01	polymorphism_score=78.9	prediction=polymorphism	ref_cov=20/8	total_cov=37/17
RA	198	.	NC_000913	581056	0	A	G	bias_e_value=4444460	bias_p_value=0.957517	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.4	fisher_strand_p_value=1	frequency=4.727e-01	ks_quality_p_value=0.723046	major_base=A	major_cov=19/10	major_frequency=5.273e-01	minor_base=G	minor_cov=17/9	new_cov=17/9	polymorphism_frequency=4.727e-01	polymorphism_score=73.9	prediction=polymorphism	ref_cov=19/10	total_cov=36/19
RA	199	.	NC_000913	581073	0	G	A	bias_e_value=3230320	bias_p_value=0.695941	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.0	fisher_strand_p_value=0.774075	frequency=4.464e-01	ks_quality_p_value=0.426412	major_base=G	major_cov=22/9	major_frequency=5.536e-01	minor_base=A	minor_cov=16/9	new_cov=16/9	polymorphism_frequency=4.464e-01	polymorphism_score=69.9	prediction=polymorphism	ref_cov=22/9	total_cov=38/18
RA	200	.	NC_000913	581118	0	T	C	bias_e_value=3167520	bias_p_value=0.682413	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.6	fisher_strand_p_value=0.76314	frequency=3.404e-01	ks_quality_p_value=0.41679	major_base=T	major_cov=19/12	major_frequency=6.596e-01	minor_base=C	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=3.404e-01	polymorphism_score=41.6	prediction=polymorphism	ref_cov=19/12	total_cov=28/19
RA	201	.	NC_000913	581127	0	G	A	bias_e_value=1832450	bias_p_value=0.394783	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.6	fisher_strand_p_value=0.538117	frequency=3.333e-01	ks_quality_p_value=0.241177	major_base=G	major_cov=19/11	major_frequency=6.667e-01	minor_base=A	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=3.333e-01	polymorphism_score=40.6	prediction=polymorphism	ref_cov=19/11	total_cov=27/18
RA	202	.	NC_000913	581133	0	A	G	bias_e_value=3522300	bias_p_value=0.758847	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.0	fisher_strand_p_value=0.757803	frequency=3.556e-01	ks_quality_p_value=0.516921	major_base=A	major_cov=18/11	major_frequency=6.444e-01	minor_base=G	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=3.556e-01	polymorphism_score=47.6	prediction=polymorphism	ref_cov=18/11	total_cov=27/18
RA	203	.	NC_000913	581227	0	A	C	bias_e_value=3656820	bias_p_value=0.787828	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.5	fisher_strand_p_value=0.569997	frequency=3.800e-01	ks_quality_p_value=0.743919	major_base=A	major_cov=19/12	major_frequency=6.200e-01	minor_base=C	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=3.800e-01	polymorphism_score=41.9	prediction=polymorphism	ref_cov=19/12	total_cov=29/22
RA	204	.	NC_000913	631633	0	G	A	bias_e_value=3436670	bias_p_value=0.740399	consensus_score=175.8	fisher_strand_p_value=0.372549	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/32	major_frequency=9.804e-01	minor_base=G	minor_cov=1/0	new_cov=18/32	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=20/32
RA	205	.	NC_000913	987152	0	G	T	consensus_score=51.2	frequency=1	major_base=T	major_cov=4/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/12
RA	206	.	NC_000913	1196220	0	C	T	consensus_score=54.6	frequency=1	major_base=T	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	207	.	NC_000913	1196232	0	C	T	consensus_score=46.6	frequency=1	major_base=T	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	208	.	NC_000913	1196245	0	T	C	consensus_score=46.6	frequency=1	major_base=C	major_cov=6/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/13
RA	209	.	NC_000913	1196247	0	A	G	consensus_score=42.9	frequency=1	major_base=G	major_cov=6/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/13
RA	210	.	NC_000913	1196277	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=26.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=5/9	major_frequency=9.333e-01	minor_base=A	minor_cov=0/1	new_cov=5/9	polymorphism_frequency=9.333e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	211	.	NC_000913	1196280	0	G	C	consensus_score=30.3	frequency=1	major_base=C	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	212	.	NC_000913	1196283	0	A	G	consensus_score=28.2	frequency=1	major_base=G	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	213	.	NC_000913	1196292	0	C	T	consensus_score=28.6	frequency=1	major_base=T	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	214	.	NC_000913	1196304	0	G	A	consensus_score=23.1	frequency=1	major_base=A	major_cov=5/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/8
RA	215	.	NC_000913	1196316	0	T	A	consensus_score=17.5	frequency=1	major_base=A	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	216	.	NC_000913	1196325	0	A	G	consensus_score=17.5	frequency=1	major_base=G	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	217	.	NC_000913	1196352	0	C	A	consensus_score=10.3	frequency=1	major_base=A	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	218	.	NC_000913	1290881	0	C	T	bias_e_value=4634750	bias_p_value=0.998513	consensus_score=46.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.945959	major_base=T	major_cov=7/9	major_frequency=8.889e-01	minor_base=C	minor_cov=1/1	new_cov=7/9	polymorphism_frequency=8.889e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/1	total_cov=8/10
RA	219	.	NC_000913	1337394	0	A	G	consensus_score=106.6	frequency=1	major_base=G	major_cov=13/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/20
RA	220	.	NC_000913	1352193	0	G	A	consensus_score=110.6	frequency=1	major_base=A	major_cov=12/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/21
RA	221	.	NC_000913	1353758	0	T	A	bias_e_value=2812140	bias_p_value=0.60585	consensus_score=99.9	fisher_strand_p_value=0.256757	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=19/15	major_frequency=9.189e-01	minor_base=C	minor_cov=3/0	new_cov=19/15	polymorphism_frequency=9.189e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/15
RA	222	.	NC_000913	1355904	0	C	T	consensus_score=113.1	frequency=1	major_base=T	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	223	.	NC_000913	1357473	0	C	T	consensus_score=101.1	frequency=1	major_base=T	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	224	.	NC_000913	1362803	0	C	T	consensus_score=92.8	frequency=1	major_base=T	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	225	.	NC_000913	1366985	0	C	T	consensus_score=85.6	frequency=1	major_base=T	major_cov=9/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/15
RA	226	.	NC_000913	1382845	0	C	T	consensus_score=105.0	frequency=1	major_base=T	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	227	.	NC_000913	1423272	0	C	T	bias_e_value=1988890	bias_p_value=0.428487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.4	fisher_strand_p_value=0.314098	frequency=2.444e-01	ks_quality_p_value=0.467411	major_base=C	major_cov=19/15	major_frequency=7.556e-01	minor_base=T	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=2.444e-01	polymorphism_score=24.4	prediction=polymorphism	ref_cov=19/15	total_cov=24/22
RA	228	.	NC_000913	1423273	0	G	A	bias_e_value=2185170	bias_p_value=0.470774	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.0	fisher_strand_p_value=0.298882	frequency=2.444e-01	ks_quality_p_value=0.56792	major_base=G	major_cov=20/14	major_frequency=7.556e-01	minor_base=A	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=2.444e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=20/14	total_cov=24/21
RA	229	.	NC_000913	1423283	0	A	C	bias_e_value=1563780	bias_p_value=0.336902	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.5	fisher_strand_p_value=0.106003	frequency=2.708e-01	ks_quality_p_value=0.970766	major_base=A	major_cov=21/14	major_frequency=7.292e-01	minor_base=C	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=2.708e-01	polymorphism_score=27.7	prediction=polymorphism	ref_cov=21/14	total_cov=25/23
RA	230	.	NC_000913	1423284	0	A	C	bias_e_value=1060150	bias_p_value=0.228399	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.9	fisher_strand_p_value=0.106003	frequency=2.708e-01	ks_quality_p_value=0.564666	major_base=A	major_cov=21/14	major_frequency=7.292e-01	minor_base=C	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=2.708e-01	polymorphism_score=24.2	prediction=polymorphism	ref_cov=21/14	total_cov=25/23
RA	231	.	NC_000913	1423338	0	G	C	bias_e_value=4056660	bias_p_value=0.87397	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.3	fisher_strand_p_value=0.542001	frequency=3.778e-01	ks_quality_p_value=1	major_base=G	major_cov=15/13	major_frequency=6.222e-01	minor_base=C	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=3.778e-01	polymorphism_score=49.5	prediction=polymorphism	ref_cov=15/13	total_cov=22/24
RA	232	.	NC_000913	1423404	0	G	T	bias_e_value=1018960	bias_p_value=0.219526	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.1	fisher_strand_p_value=0.378119	frequency=3.469e-01	ks_quality_p_value=0.150043	major_base=G	major_cov=16/16	major_frequency=6.531e-01	minor_base=T	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=3.469e-01	polymorphism_score=39.2	prediction=polymorphism	ref_cov=16/16	total_cov=22/27
RA	233	.	NC_000913	1428954	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.7	fisher_strand_p_value=1	frequency=2.143e-01	ks_quality_p_value=1	major_base=T	major_cov=10/23	major_frequency=7.857e-01	minor_base=A	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.143e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=10/23	total_cov=13/29
RA	234	.	NC_000913	1428963	0	G	T	bias_e_value=3191110	bias_p_value=0.687495	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.9	fisher_strand_p_value=1	frequency=2.273e-01	ks_quality_p_value=0.322533	major_base=G	major_cov=12/22	major_frequency=7.727e-01	minor_base=T	minor_cov=4/6	new_cov=4/6	polymorphism_frequency=2.273e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=12/22	total_cov=16/28
RA	235	.	NC_000913	1428966	0	T	G	bias_e_value=2851790	bias_p_value=0.614392	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.2	fisher_strand_p_value=1	frequency=2.444e-01	ks_quality_p_value=0.263096	major_base=T	major_cov=12/22	major_frequency=7.556e-01	minor_base=G	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=2.444e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=12/22	total_cov=16/29
RA	236	.	NC_000913	1428978	0	G	A	bias_e_value=2150250	bias_p_value=0.46325	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.3	fisher_strand_p_value=0.324099	frequency=2.549e-01	ks_quality_p_value=0.510734	major_base=G	major_cov=13/25	major_frequency=7.451e-01	minor_base=A	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.549e-01	polymorphism_score=30.7	prediction=polymorphism	ref_cov=13/25	total_cov=20/31
RA	237	.	NC_000913	1429021	0	T	A	bias_e_value=1300930	bias_p_value=0.280273	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.9	fisher_strand_p_value=0.225322	frequency=3.019e-01	ks_quality_p_value=0.351915	major_base=T	major_cov=13/24	major_frequency=6.981e-01	minor_base=A	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=3.019e-01	polymorphism_score=48.2	prediction=polymorphism	ref_cov=13/24	total_cov=22/31
RA	238	.	NC_000913	1429022	0	T	A	bias_e_value=2430410	bias_p_value=0.523609	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.2	fisher_strand_p_value=0.22882	frequency=3.077e-01	ks_quality_p_value=0.878734	major_base=T	major_cov=13/23	major_frequency=6.923e-01	minor_base=A	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=3.077e-01	polymorphism_score=45.8	prediction=polymorphism	ref_cov=13/23	total_cov=22/31
RA	239	.	NC_000913	1429024	0	A	C	bias_e_value=1777180	bias_p_value=0.382877	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.1	fisher_strand_p_value=0.132379	frequency=3.019e-01	ks_quality_p_value=0.936812	major_base=A	major_cov=12/25	major_frequency=6.981e-01	minor_base=C	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=3.019e-01	polymorphism_score=39.6	prediction=polymorphism	ref_cov=12/25	total_cov=21/32
RA	240	.	NC_000913	1429027	0	C	T	bias_e_value=1741700	bias_p_value=0.375232	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.7	fisher_strand_p_value=0.122453	frequency=3.077e-01	ks_quality_p_value=0.983051	major_base=C	major_cov=11/25	major_frequency=6.923e-01	minor_base=T	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=3.077e-01	polymorphism_score=37.1	prediction=polymorphism	ref_cov=11/25	total_cov=21/32
RA	241	.	NC_000913	1429069	0	T	A	bias_e_value=446310	bias_p_value=0.0961532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.3	fisher_strand_p_value=0.116314	frequency=3.443e-01	ks_quality_p_value=0.167376	major_base=T	major_cov=16/24	major_frequency=6.557e-01	minor_base=A	minor_cov=13/8	new_cov=13/8	polymorphism_frequency=3.443e-01	polymorphism_score=62.2	prediction=polymorphism	ref_cov=16/24	total_cov=29/33
RA	242	.	NC_000913	1429072	0	A	C	bias_e_value=1421930	bias_p_value=0.30634	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.5	fisher_strand_p_value=0.184138	frequency=3.281e-01	ks_quality_p_value=0.487918	major_base=A	major_cov=18/25	major_frequency=6.719e-01	minor_base=C	minor_cov=13/8	new_cov=13/8	polymorphism_frequency=3.281e-01	polymorphism_score=56.9	prediction=polymorphism	ref_cov=18/25	total_cov=31/33
RA	243	.	NC_000913	1429111	0	A	C	bias_e_value=130586	bias_p_value=0.0281336	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.6	fisher_strand_p_value=0.266298	frequency=4.096e-01	ks_quality_p_value=0.0164249	major_base=A	major_cov=22/27	major_frequency=5.904e-01	minor_base=C	minor_cov=20/14	new_cov=20/14	polymorphism_frequency=4.096e-01	polymorphism_score=112.0	prediction=polymorphism	ref_cov=22/27	total_cov=42/41
RA	244	.	NC_000913	1429114	0	C	T	bias_e_value=310689	bias_p_value=0.066935	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.4	fisher_strand_p_value=0.270401	frequency=4.146e-01	ks_quality_p_value=0.0459407	major_base=C	major_cov=22/26	major_frequency=5.854e-01	minor_base=T	minor_cov=20/14	new_cov=20/14	polymorphism_frequency=4.146e-01	polymorphism_score=98.0	prediction=polymorphism	ref_cov=22/26	total_cov=42/40
RA	245	.	NC_000913	1429126	0	A	C	bias_e_value=2787010	bias_p_value=0.600436	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.6	fisher_strand_p_value=0.525941	frequency=4.286e-01	ks_quality_p_value=0.480657	major_base=A	major_cov=25/27	major_frequency=5.714e-01	minor_base=C	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=4.286e-01	polymorphism_score=123.8	prediction=polymorphism	ref_cov=25/27	total_cov=47/44
RA	246	.	NC_000913	1429128	0	A	G	bias_e_value=530380	bias_p_value=0.114265	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.1	fisher_strand_p_value=0.525941	frequency=4.286e-01	ks_quality_p_value=0.0460165	major_base=A	major_cov=25/27	major_frequency=5.714e-01	minor_base=G	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=4.286e-01	polymorphism_score=122.6	prediction=polymorphism	ref_cov=25/27	total_cov=47/44
RA	247	.	NC_000913	1429160	0	C	G	bias_e_value=32360.4	bias_p_value=0.00697174	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.2	fisher_strand_p_value=0.670708	frequency=4.773e-01	ks_quality_p_value=0.00129097	major_base=C	major_cov=25/21	major_frequency=5.227e-01	minor_base=G	minor_cov=25/17	new_cov=25/17	polymorphism_frequency=4.773e-01	polymorphism_score=162.8	prediction=polymorphism	ref_cov=25/21	total_cov=50/38
RA	248	.	NC_000913	1429164	0	C	G	bias_e_value=564652	bias_p_value=0.121649	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.9	fisher_strand_p_value=0.664407	frequency=4.713e-01	ks_quality_p_value=0.0394455	major_base=C	major_cov=25/21	major_frequency=5.287e-01	minor_base=G	minor_cov=25/16	new_cov=25/16	polymorphism_frequency=4.713e-01	polymorphism_score=145.4	prediction=polymorphism	ref_cov=25/21	total_cov=50/38
RA	249	.	NC_000913	1429171	0	A	G	bias_e_value=3692600	bias_p_value=0.795535	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.7	fisher_strand_p_value=0.836269	frequency=4.891e-01	ks_quality_p_value=0.517928	major_base=A	major_cov=26/21	major_frequency=5.109e-01	minor_base=G	minor_cov=26/19	new_cov=26/19	polymorphism_frequency=4.891e-01	polymorphism_score=146.4	prediction=polymorphism	ref_cov=26/21	total_cov=52/40
RA	250	.	NC_000913	1429204	0	C	T	bias_e_value=332175	bias_p_value=0.071564	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.7	fisher_strand_p_value=0.66648	frequency=4.891e-01	ks_quality_p_value=0.0202367	major_base=C	major_cov=31/16	major_frequency=5.109e-01	minor_base=T	minor_cov=27/18	new_cov=27/18	polymorphism_frequency=4.891e-01	polymorphism_score=134.6	prediction=polymorphism	ref_cov=31/16	total_cov=58/35
RA	251	.	NC_000913	1429207	0	T	G	bias_e_value=267659	bias_p_value=0.0576647	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.8	fisher_strand_p_value=0.522942	frequency=4.894e-01	ks_quality_p_value=0.0197949	major_base=T	major_cov=32/16	major_frequency=5.106e-01	minor_base=G	minor_cov=27/19	new_cov=27/19	polymorphism_frequency=4.894e-01	polymorphism_score=143.6	prediction=polymorphism	ref_cov=32/16	total_cov=59/35
RA	252	.	NC_000913	1429225	0	C	T	bias_e_value=3464270	bias_p_value=0.746343	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.9	fisher_strand_p_value=0.378619	frequency=5.057e-01	ks_quality_p_value=1	major_base=T	major_cov=25/19	major_frequency=5.057e-01	minor_base=C	minor_cov=29/14	new_cov=25/19	polymorphism_frequency=5.057e-01	polymorphism_score=112.6	prediction=polymorphism	ref_cov=29/14	total_cov=55/33
RA	253	.	NC_000913	1429228	0	T	C	bias_e_value=1128.81	bias_p_value=0.00024319	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.8	fisher_strand_p_value=0.509717	frequency=4.886e-01	ks_quality_p_value=4.04713e-05	major_base=T	major_cov=30/15	major_frequency=5.114e-01	minor_base=C	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.886e-01	polymorphism_score=135.9	prediction=polymorphism	ref_cov=30/15	total_cov=55/33
RA	254	.	NC_000913	1429231	0	T	C	bias_e_value=557730	bias_p_value=0.120158	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.7	fisher_strand_p_value=0.509717	frequency=4.886e-01	ks_quality_p_value=0.0506149	major_base=T	major_cov=30/15	major_frequency=5.114e-01	minor_base=C	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.886e-01	polymorphism_score=137.0	prediction=polymorphism	ref_cov=30/15	total_cov=55/33
RA	255	.	NC_000913	1429235	0	T	C	bias_e_value=1574400	bias_p_value=0.339189	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.0	fisher_strand_p_value=0.376294	frequency=4.886e-01	ks_quality_p_value=0.276144	major_base=T	major_cov=31/14	major_frequency=5.114e-01	minor_base=C	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.886e-01	polymorphism_score=134.8	prediction=polymorphism	ref_cov=31/14	total_cov=56/33
RA	256	.	NC_000913	1429236	0	T	A	bias_e_value=440929	bias_p_value=0.094994	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.6	fisher_strand_p_value=0.275234	frequency=4.828e-01	ks_quality_p_value=0.0696662	major_base=T	major_cov=31/14	major_frequency=5.172e-01	minor_base=A	minor_cov=24/18	new_cov=24/18	polymorphism_frequency=4.828e-01	polymorphism_score=143.8	prediction=polymorphism	ref_cov=31/14	total_cov=56/33
RA	257	.	NC_000913	1429240	0	G	T	bias_e_value=237865	bias_p_value=0.0512457	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.3	fisher_strand_p_value=0.388769	frequency=4.831e-01	ks_quality_p_value=0.0230686	major_base=G	major_cov=31/15	major_frequency=5.169e-01	minor_base=T	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.831e-01	polymorphism_score=126.4	prediction=polymorphism	ref_cov=31/15	total_cov=56/33
RA	258	.	NC_000913	1429243	0	A	C	bias_e_value=332871	bias_p_value=0.0717139	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.5	fisher_strand_p_value=0.666382	frequency=4.725e-01	ks_quality_p_value=0.0202919	major_base=A	major_cov=31/17	major_frequency=5.275e-01	minor_base=C	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.725e-01	polymorphism_score=138.8	prediction=polymorphism	ref_cov=31/17	total_cov=56/35
RA	259	.	NC_000913	1429246	0	A	T	bias_e_value=3183480	bias_p_value=0.685851	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.5	fisher_strand_p_value=0.519991	frequency=4.831e-01	ks_quality_p_value=0.617478	major_base=A	major_cov=30/16	major_frequency=5.169e-01	minor_base=T	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.831e-01	polymorphism_score=135.0	prediction=polymorphism	ref_cov=30/16	total_cov=55/35
RA	260	.	NC_000913	1429249	0	C	T	bias_e_value=3402600	bias_p_value=0.733057	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.1	fisher_strand_p_value=0.6668	frequency=4.778e-01	ks_quality_p_value=0.547672	major_base=C	major_cov=30/17	major_frequency=5.222e-01	minor_base=T	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.778e-01	polymorphism_score=131.6	prediction=polymorphism	ref_cov=30/17	total_cov=55/35
RA	261	.	NC_000913	1429252	0	G	A	bias_e_value=711139	bias_p_value=0.153208	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.2	fisher_strand_p_value=0.669263	frequency=4.831e-01	ks_quality_p_value=0.0526863	major_base=G	major_cov=29/17	major_frequency=5.169e-01	minor_base=A	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.831e-01	polymorphism_score=128.1	prediction=polymorphism	ref_cov=29/17	total_cov=54/35
RA	262	.	NC_000913	1429255	0	G	A	bias_e_value=385456	bias_p_value=0.0830428	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.1	fisher_strand_p_value=0.511635	frequency=4.943e-01	ks_quality_p_value=0.0316889	major_base=G	major_cov=29/15	major_frequency=5.057e-01	minor_base=A	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.943e-01	polymorphism_score=126.2	prediction=polymorphism	ref_cov=29/15	total_cov=54/35
RA	263	.	NC_000913	1429258	0	A	G	bias_e_value=3365650	bias_p_value=0.725097	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.2	fisher_strand_p_value=0.669263	frequency=4.831e-01	ks_quality_p_value=0.533975	major_base=A	major_cov=29/17	major_frequency=5.169e-01	minor_base=G	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.831e-01	polymorphism_score=133.9	prediction=polymorphism	ref_cov=29/17	total_cov=54/35
RA	264	.	NC_000913	1429261	0	T	C	bias_e_value=4322050	bias_p_value=0.931144	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.6	fisher_strand_p_value=0.662107	frequency=4.886e-01	ks_quality_p_value=0.985715	major_base=T	major_cov=29/16	major_frequency=5.114e-01	minor_base=C	minor_cov=25/18	new_cov=25/18	polymorphism_frequency=4.886e-01	polymorphism_score=126.5	prediction=polymorphism	ref_cov=29/16	total_cov=54/35
RA	265	.	NC_000913	1429273	0	T	C	bias_e_value=3901500	bias_p_value=0.840542	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.9	fisher_strand_p_value=0.667883	frequency=5.055e-01	ks_quality_p_value=0.735766	major_base=C	major_cov=27/19	major_frequency=5.055e-01	minor_base=T	minor_cov=29/16	new_cov=27/19	polymorphism_frequency=5.055e-01	polymorphism_score=134.5	prediction=polymorphism	ref_cov=29/16	total_cov=56/35
RA	266	.	NC_000913	1429291	0	T	A	bias_e_value=2078730	bias_p_value=0.447844	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.3	fisher_strand_p_value=0.267953	frequency=4.884e-01	ks_quality_p_value=0.586239	major_base=T	major_cov=30/14	major_frequency=5.116e-01	minor_base=A	minor_cov=23/19	new_cov=23/19	polymorphism_frequency=4.884e-01	polymorphism_score=140.6	prediction=polymorphism	ref_cov=30/14	total_cov=53/33
RA	267	.	NC_000913	1429297	0	C	G	bias_e_value=2396210	bias_p_value=0.516241	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.3	fisher_strand_p_value=0.25524	frequency=4.625e-01	ks_quality_p_value=0.769906	major_base=C	major_cov=29/14	major_frequency=5.375e-01	minor_base=G	minor_cov=20/17	new_cov=20/17	polymorphism_frequency=4.625e-01	polymorphism_score=133.2	prediction=polymorphism	ref_cov=29/14	total_cov=50/31
RA	268	.	NC_000913	1429300	0	T	G	bias_e_value=2679320	bias_p_value=0.577235	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.6	fisher_strand_p_value=0.25524	frequency=4.625e-01	ks_quality_p_value=0.925894	major_base=T	major_cov=29/14	major_frequency=5.375e-01	minor_base=G	minor_cov=20/17	new_cov=20/17	polymorphism_frequency=4.625e-01	polymorphism_score=92.8	prediction=polymorphism	ref_cov=29/14	total_cov=49/31
RA	269	.	NC_000913	1429319	0	G	T	bias_e_value=889514	bias_p_value=0.191637	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.2	fisher_strand_p_value=0.497692	frequency=4.625e-01	ks_quality_p_value=0.0950475	major_base=G	major_cov=27/16	major_frequency=5.375e-01	minor_base=T	minor_cov=20/17	new_cov=20/17	polymorphism_frequency=4.625e-01	polymorphism_score=112.4	prediction=polymorphism	ref_cov=27/16	total_cov=47/33
RA	270	.	NC_000913	1429345	0	T	G	bias_e_value=3097990	bias_p_value=0.667432	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.7	fisher_strand_p_value=0.514041	frequency=4.333e-01	ks_quality_p_value=0.593768	major_base=T	major_cov=33/18	major_frequency=5.667e-01	minor_base=G	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=4.333e-01	polymorphism_score=95.5	prediction=polymorphism	ref_cov=33/18	total_cov=56/35
RA	271	.	NC_000913	1429353	0	C	T	bias_e_value=3727530	bias_p_value=0.803061	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.9	fisher_strand_p_value=0.654658	frequency=4.138e-01	ks_quality_p_value=0.675522	major_base=C	major_cov=33/18	major_frequency=5.862e-01	minor_base=T	minor_cov=21/15	new_cov=21/15	polymorphism_frequency=4.138e-01	polymorphism_score=90.7	prediction=polymorphism	ref_cov=33/18	total_cov=54/33
RA	272	.	NC_000913	1429354	0	A	G	bias_e_value=3424270	bias_p_value=0.737726	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.7	fisher_strand_p_value=0.654705	frequency=4.302e-01	ks_quality_p_value=0.564914	major_base=A	major_cov=32/17	major_frequency=5.698e-01	minor_base=G	minor_cov=22/15	new_cov=22/15	polymorphism_frequency=4.302e-01	polymorphism_score=105.6	prediction=polymorphism	ref_cov=32/17	total_cov=54/33
RA	273	.	NC_000913	1429360	0	C	T	bias_e_value=3783770	bias_p_value=0.815177	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.0	fisher_strand_p_value=0.662849	frequency=4.535e-01	ks_quality_p_value=0.690051	major_base=C	major_cov=30/17	major_frequency=5.465e-01	minor_base=T	minor_cov=23/16	new_cov=23/16	polymorphism_frequency=4.535e-01	polymorphism_score=112.2	prediction=polymorphism	ref_cov=30/17	total_cov=54/33
RA	274	.	NC_000913	1429364	0	T	C	bias_e_value=644445	bias_p_value=0.13884	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.9	fisher_strand_p_value=0.507504	frequency=4.483e-01	ks_quality_p_value=0.06117	major_base=T	major_cov=32/16	major_frequency=5.517e-01	minor_base=C	minor_cov=23/16	new_cov=23/16	polymorphism_frequency=4.483e-01	polymorphism_score=114.0	prediction=polymorphism	ref_cov=32/16	total_cov=55/32
RA	275	.	NC_000913	1429404	0	C	T	bias_e_value=3310590	bias_p_value=0.713235	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.1	fisher_strand_p_value=0.817697	frequency=4.186e-01	ks_quality_p_value=0.423162	major_base=C	major_cov=34/16	major_frequency=5.814e-01	minor_base=T	minor_cov=23/13	new_cov=23/13	polymorphism_frequency=4.186e-01	polymorphism_score=104.9	prediction=polymorphism	ref_cov=34/16	total_cov=57/29
RA	276	.	NC_000913	1429416	0	A	G	bias_e_value=1632310	bias_p_value=0.351666	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.3	fisher_strand_p_value=0.641239	frequency=3.855e-01	ks_quality_p_value=0.170742	major_base=A	major_cov=32/19	major_frequency=6.145e-01	minor_base=G	minor_cov=22/10	new_cov=22/10	polymorphism_frequency=3.855e-01	polymorphism_score=97.6	prediction=polymorphism	ref_cov=32/19	total_cov=54/29
RA	277	.	NC_000913	1429417	0	C	T	bias_e_value=3482280	bias_p_value=0.750225	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.1	fisher_strand_p_value=0.641239	frequency=3.855e-01	ks_quality_p_value=0.596715	major_base=C	major_cov=32/19	major_frequency=6.145e-01	minor_base=T	minor_cov=22/10	new_cov=22/10	polymorphism_frequency=3.855e-01	polymorphism_score=87.3	prediction=polymorphism	ref_cov=32/19	total_cov=54/29
RA	278	.	NC_000913	1429425	0	C	A	bias_e_value=1877830	bias_p_value=0.40456	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.8	fisher_strand_p_value=1	frequency=3.529e-01	ks_quality_p_value=0.134613	major_base=C	major_cov=35/20	major_frequency=6.471e-01	minor_base=A	minor_cov=19/11	new_cov=19/11	polymorphism_frequency=3.529e-01	polymorphism_score=83.8	prediction=polymorphism	ref_cov=35/20	total_cov=54/32
RA	279	.	NC_000913	1429435	0	G	A	bias_e_value=2551600	bias_p_value=0.549719	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.6	fisher_strand_p_value=0.477488	frequency=3.373e-01	ks_quality_p_value=0.456072	major_base=G	major_cov=32/23	major_frequency=6.627e-01	minor_base=A	minor_cov=19/9	new_cov=19/9	polymorphism_frequency=3.373e-01	polymorphism_score=78.3	prediction=polymorphism	ref_cov=32/23	total_cov=51/32
RA	280	.	NC_000913	1429442	0	A	G	bias_e_value=3583150	bias_p_value=0.771956	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.7	fisher_strand_p_value=0.473801	frequency=3.049e-01	ks_quality_p_value=0.856868	major_base=A	major_cov=31/26	major_frequency=6.951e-01	minor_base=G	minor_cov=16/9	new_cov=16/9	polymorphism_frequency=3.049e-01	polymorphism_score=65.3	prediction=polymorphism	ref_cov=31/26	total_cov=47/35
RA	281	.	NC_000913	1429444	0	T	C	bias_e_value=1793030	bias_p_value=0.386292	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.5	fisher_strand_p_value=0.472954	frequency=3.125e-01	ks_quality_p_value=0.265682	major_base=T	major_cov=30/25	major_frequency=6.875e-01	minor_base=C	minor_cov=16/9	new_cov=16/9	polymorphism_frequency=3.125e-01	polymorphism_score=68.8	prediction=polymorphism	ref_cov=30/25	total_cov=47/35
RA	282	.	NC_000913	1429453	0	C	T	bias_e_value=1533050	bias_p_value=0.330282	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.7	fisher_strand_p_value=0.619885	frequency=2.949e-01	ks_quality_p_value=0.161337	major_base=C	major_cov=29/26	major_frequency=7.051e-01	minor_base=T	minor_cov=14/9	new_cov=14/9	polymorphism_frequency=2.949e-01	polymorphism_score=58.0	prediction=polymorphism	ref_cov=29/26	total_cov=44/36
RA	283	.	NC_000913	1429454	0	A	G	bias_e_value=1148800	bias_p_value=0.247498	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.6	fisher_strand_p_value=0.453278	frequency=2.785e-01	ks_quality_p_value=0.147317	major_base=A	major_cov=30/27	major_frequency=7.215e-01	minor_base=G	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.785e-01	polymorphism_score=62.9	prediction=polymorphism	ref_cov=30/27	total_cov=44/36
RA	284	.	NC_000913	1429462	0	C	T	bias_e_value=190801	bias_p_value=0.0411062	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.7	fisher_strand_p_value=0.621325	frequency=2.875e-01	ks_quality_p_value=0.0110633	major_base=C	major_cov=30/27	major_frequency=7.125e-01	minor_base=T	minor_cov=14/9	new_cov=14/9	polymorphism_frequency=2.875e-01	polymorphism_score=60.7	prediction=polymorphism	ref_cov=30/27	total_cov=44/36
RA	285	.	NC_000913	1429463	0	C	G	bias_e_value=1008230	bias_p_value=0.217214	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.9	fisher_strand_p_value=0.327979	frequency=2.785e-01	ks_quality_p_value=0.170531	major_base=C	major_cov=29/28	major_frequency=7.215e-01	minor_base=G	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.785e-01	polymorphism_score=74.4	prediction=polymorphism	ref_cov=29/28	total_cov=44/36
RA	286	.	NC_000913	1429464	0	G	C	bias_e_value=15378.2	bias_p_value=0.00331308	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.2	fisher_strand_p_value=0.451572	frequency=2.750e-01	ks_quality_p_value=0.000824782	major_base=G	major_cov=30/28	major_frequency=7.250e-01	minor_base=C	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.750e-01	polymorphism_score=80.4	prediction=polymorphism	ref_cov=30/28	total_cov=44/36
RA	287	.	NC_000913	1429466	0	G	C	bias_e_value=408290	bias_p_value=0.0879623	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.9	fisher_strand_p_value=0.45345	frequency=2.683e-01	ks_quality_p_value=0.0384105	major_base=G	major_cov=31/29	major_frequency=7.317e-01	minor_base=C	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.683e-01	polymorphism_score=70.3	prediction=polymorphism	ref_cov=31/29	total_cov=45/37
RA	288	.	NC_000913	1429470	0	C	T	bias_e_value=1393840	bias_p_value=0.300289	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.0	fisher_strand_p_value=0.328881	frequency=2.716e-01	ks_quality_p_value=0.26559	major_base=C	major_cov=30/29	major_frequency=7.284e-01	minor_base=T	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.716e-01	polymorphism_score=57.5	prediction=polymorphism	ref_cov=30/29	total_cov=44/37
RA	289	.	NC_000913	1429471	0	G	C	bias_e_value=83111	bias_p_value=0.0179055	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.6	fisher_strand_p_value=0.328881	frequency=2.716e-01	ks_quality_p_value=0.00781865	major_base=G	major_cov=30/29	major_frequency=7.284e-01	minor_base=C	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.716e-01	polymorphism_score=78.3	prediction=polymorphism	ref_cov=30/29	total_cov=44/37
RA	290	.	NC_000913	1429474	0	A	G	bias_e_value=883663	bias_p_value=0.190377	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.4	fisher_strand_p_value=0.451572	frequency=2.750e-01	ks_quality_p_value=0.103841	major_base=A	major_cov=30/28	major_frequency=7.250e-01	minor_base=G	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.750e-01	polymorphism_score=57.5	prediction=polymorphism	ref_cov=30/28	total_cov=44/37
RA	291	.	NC_000913	1429475	0	A	G	bias_e_value=937858	bias_p_value=0.202053	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.3	fisher_strand_p_value=0.451572	frequency=2.750e-01	ks_quality_p_value=0.112404	major_base=A	major_cov=30/28	major_frequency=7.250e-01	minor_base=G	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.750e-01	polymorphism_score=57.4	prediction=polymorphism	ref_cov=30/28	total_cov=44/37
RA	292	.	NC_000913	1429479	0	A	T	bias_e_value=632761	bias_p_value=0.136322	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.8	fisher_strand_p_value=0.328881	frequency=2.716e-01	ks_quality_p_value=0.092196	major_base=A	major_cov=30/29	major_frequency=7.284e-01	minor_base=T	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.716e-01	polymorphism_score=63.7	prediction=polymorphism	ref_cov=30/29	total_cov=44/37
RA	293	.	NC_000913	1429482	0	C	T	bias_e_value=317302	bias_p_value=0.0683598	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.6	fisher_strand_p_value=0.322119	frequency=2.750e-01	ks_quality_p_value=0.0395755	major_base=C	major_cov=29/29	major_frequency=7.250e-01	minor_base=T	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.750e-01	polymorphism_score=52.8	prediction=polymorphism	ref_cov=29/29	total_cov=44/37
RA	294	.	NC_000913	1429484	0	G	A	bias_e_value=19209	bias_p_value=0.00413841	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.9	fisher_strand_p_value=0.328881	frequency=2.716e-01	ks_quality_p_value=0.00145567	major_base=G	major_cov=30/29	major_frequency=7.284e-01	minor_base=A	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.716e-01	polymorphism_score=56.8	prediction=polymorphism	ref_cov=30/29	total_cov=44/38
RA	295	.	NC_000913	1429492	0	T	A	bias_e_value=764741	bias_p_value=0.164756	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.9	fisher_strand_p_value=0.451572	frequency=2.750e-01	ks_quality_p_value=0.0858417	major_base=T	major_cov=30/28	major_frequency=7.250e-01	minor_base=A	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.750e-01	polymorphism_score=65.0	prediction=polymorphism	ref_cov=30/28	total_cov=45/36
RA	296	.	NC_000913	1429493	0	G	A	bias_e_value=2336510	bias_p_value=0.50338	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.1	fisher_strand_p_value=0.454634	frequency=2.716e-01	ks_quality_p_value=0.415065	major_base=G	major_cov=31/28	major_frequency=7.284e-01	minor_base=A	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.716e-01	polymorphism_score=51.0	prediction=polymorphism	ref_cov=31/28	total_cov=45/36
RA	297	.	NC_000913	1429495	0	G	T	bias_e_value=229695	bias_p_value=0.0494857	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.4	fisher_strand_p_value=0.459205	frequency=2.683e-01	ks_quality_p_value=0.0187208	major_base=G	major_cov=32/28	major_frequency=7.317e-01	minor_base=T	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.683e-01	polymorphism_score=62.7	prediction=polymorphism	ref_cov=32/28	total_cov=46/36
RA	298	.	NC_000913	1429510	0	A	C	bias_e_value=3027930	bias_p_value=0.65234	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.1	fisher_strand_p_value=0.668336	frequency=3.232e-01	ks_quality_p_value=0.437986	major_base=A	major_cov=36/31	major_frequency=6.768e-01	minor_base=C	minor_cov=19/13	new_cov=19/13	polymorphism_frequency=3.232e-01	polymorphism_score=79.0	prediction=polymorphism	ref_cov=36/31	total_cov=55/45
RA	299	.	NC_000913	1429522	0	A	C	bias_e_value=3670040	bias_p_value=0.790675	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.4	fisher_strand_p_value=0.675418	frequency=3.269e-01	ks_quality_p_value=0.632742	major_base=A	major_cov=37/33	major_frequency=6.731e-01	minor_base=C	minor_cov=20/14	new_cov=20/14	polymorphism_frequency=3.269e-01	polymorphism_score=85.2	prediction=polymorphism	ref_cov=37/33	total_cov=57/47
RA	300	.	NC_000913	1429534	0	C	T	bias_e_value=12255	bias_p_value=0.00264022	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.2	fisher_strand_p_value=0.298834	frequency=3.333e-01	ks_quality_p_value=0.000965507	major_base=C	major_cov=35/35	major_frequency=6.667e-01	minor_base=T	minor_cov=22/13	new_cov=22/13	polymorphism_frequency=3.333e-01	polymorphism_score=93.7	prediction=polymorphism	ref_cov=35/35	total_cov=58/48
RA	301	.	NC_000913	1429537	0	G	A	bias_e_value=51.1076	bias_p_value=1.10106e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.1	fisher_strand_p_value=0.296843	frequency=3.431e-01	ks_quality_p_value=2.45101e-06	major_base=G	major_cov=34/33	major_frequency=6.569e-01	minor_base=A	minor_cov=22/13	new_cov=22/13	polymorphism_frequency=3.431e-01	polymorphism_score=100.9	prediction=polymorphism	ref_cov=34/33	total_cov=56/47
RA	302	.	NC_000913	1429543	0	G	A	bias_e_value=440253	bias_p_value=0.0948484	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.5	fisher_strand_p_value=0.212134	frequency=3.398e-01	ks_quality_p_value=0.0902153	major_base=G	major_cov=33/35	major_frequency=6.602e-01	minor_base=A	minor_cov=22/13	new_cov=22/13	polymorphism_frequency=3.398e-01	polymorphism_score=94.6	prediction=polymorphism	ref_cov=33/35	total_cov=56/48
RA	303	.	NC_000913	1429550	0	T	G	bias_e_value=3558810	bias_p_value=0.766712	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.3	fisher_strand_p_value=0.417248	frequency=3.458e-01	ks_quality_p_value=0.959172	major_base=T	major_cov=35/35	major_frequency=6.542e-01	minor_base=G	minor_cov=22/15	new_cov=22/15	polymorphism_frequency=3.458e-01	polymorphism_score=95.0	prediction=polymorphism	ref_cov=35/35	total_cov=57/50
RA	304	.	NC_000913	1429551	0	C	A	bias_e_value=761448	bias_p_value=0.164047	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.0	fisher_strand_p_value=0.151854	frequency=3.364e-01	ks_quality_p_value=0.253834	major_base=C	major_cov=34/37	major_frequency=6.636e-01	minor_base=A	minor_cov=23/13	new_cov=23/13	polymorphism_frequency=3.364e-01	polymorphism_score=95.7	prediction=polymorphism	ref_cov=34/37	total_cov=57/50
RA	305	.	NC_000913	1429558	0	T	C	bias_e_value=1898950	bias_p_value=0.409111	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.4	fisher_strand_p_value=0.221894	frequency=3.364e-01	ks_quality_p_value=0.616927	major_base=T	major_cov=36/35	major_frequency=6.636e-01	minor_base=C	minor_cov=23/13	new_cov=23/13	polymorphism_frequency=3.364e-01	polymorphism_score=91.2	prediction=polymorphism	ref_cov=36/35	total_cov=60/49
RA	306	.	NC_000913	1429562	0	A	G	bias_e_value=1940500	bias_p_value=0.418061	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.3	fisher_strand_p_value=0.315043	frequency=3.394e-01	ks_quality_p_value=0.448925	major_base=A	major_cov=37/35	major_frequency=6.606e-01	minor_base=G	minor_cov=23/14	new_cov=23/14	polymorphism_frequency=3.394e-01	polymorphism_score=103.5	prediction=polymorphism	ref_cov=37/35	total_cov=60/49
RA	307	.	NC_000913	1429569	0	G	A	bias_e_value=4375960	bias_p_value=0.942759	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.7	fisher_strand_p_value=0.837442	frequency=3.396e-01	ks_quality_p_value=0.813573	major_base=G	major_cov=36/34	major_frequency=6.604e-01	minor_base=A	minor_cov=20/16	new_cov=20/16	polymorphism_frequency=3.396e-01	polymorphism_score=96.7	prediction=polymorphism	ref_cov=36/34	total_cov=56/50
RA	308	.	NC_000913	1429571	0	A	G	bias_e_value=3067530	bias_p_value=0.66087	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.3	fisher_strand_p_value=0.838202	frequency=3.364e-01	ks_quality_p_value=0.357591	major_base=A	major_cov=37/34	major_frequency=6.636e-01	minor_base=G	minor_cov=20/16	new_cov=20/16	polymorphism_frequency=3.364e-01	polymorphism_score=96.8	prediction=polymorphism	ref_cov=37/34	total_cov=57/50
RA	309	.	NC_000913	1429580	0	A	G	bias_e_value=4509420	bias_p_value=0.971511	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.5	fisher_strand_p_value=0.841854	frequency=3.670e-01	ks_quality_p_value=0.915834	major_base=A	major_cov=37/32	major_frequency=6.330e-01	minor_base=G	minor_cov=23/17	new_cov=23/17	polymorphism_frequency=3.670e-01	polymorphism_score=115.2	prediction=polymorphism	ref_cov=37/32	total_cov=60/49
RA	310	.	NC_000913	1429597	0	A	G	bias_e_value=4012120	bias_p_value=0.864373	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.4	fisher_strand_p_value=0.841336	frequency=3.774e-01	ks_quality_p_value=0.626014	major_base=A	major_cov=34/32	major_frequency=6.226e-01	minor_base=G	minor_cov=22/18	new_cov=22/18	polymorphism_frequency=3.774e-01	polymorphism_score=116.4	prediction=polymorphism	ref_cov=34/32	total_cov=56/50
RA	311	.	NC_000913	1429598	0	T	G	bias_e_value=3134430	bias_p_value=0.675284	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.6	fisher_strand_p_value=0.692618	frequency=3.810e-01	ks_quality_p_value=0.450318	major_base=T	major_cov=33/32	major_frequency=6.190e-01	minor_base=G	minor_cov=22/18	new_cov=22/18	polymorphism_frequency=3.810e-01	polymorphism_score=114.3	prediction=polymorphism	ref_cov=33/32	total_cov=55/50
RA	312	.	NC_000913	1429599	0	C	A	bias_e_value=4063320	bias_p_value=0.875404	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.3	fisher_strand_p_value=0.555564	frequency=3.905e-01	ks_quality_p_value=0.979816	major_base=C	major_cov=32/32	major_frequency=6.095e-01	minor_base=A	minor_cov=23/18	new_cov=23/18	polymorphism_frequency=3.905e-01	polymorphism_score=108.7	prediction=polymorphism	ref_cov=32/32	total_cov=55/50
RA	313	.	NC_000913	1429609	0	T	C	bias_e_value=2573790	bias_p_value=0.554498	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.2	fisher_strand_p_value=0.548787	frequency=3.786e-01	ks_quality_p_value=0.402559	major_base=T	major_cov=32/32	major_frequency=6.214e-01	minor_base=C	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.786e-01	polymorphism_score=107.4	prediction=polymorphism	ref_cov=32/32	total_cov=54/49
RA	314	.	NC_000913	1429612	0	C	A	bias_e_value=2092580	bias_p_value=0.450828	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.6	fisher_strand_p_value=0.541242	frequency=3.654e-01	ks_quality_p_value=0.293217	major_base=C	major_cov=33/33	major_frequency=6.346e-01	minor_base=A	minor_cov=22/16	new_cov=22/16	polymorphism_frequency=3.654e-01	polymorphism_score=97.9	prediction=polymorphism	ref_cov=33/33	total_cov=55/49
RA	315	.	NC_000913	1429615	0	T	C	bias_e_value=625923	bias_p_value=0.134849	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.2	fisher_strand_p_value=0.688159	frequency=3.714e-01	ks_quality_p_value=0.0434506	major_base=T	major_cov=34/32	major_frequency=6.286e-01	minor_base=C	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.714e-01	polymorphism_score=103.5	prediction=polymorphism	ref_cov=34/32	total_cov=56/49
RA	316	.	NC_000913	1429632	0	G	A	bias_e_value=4314520	bias_p_value=0.929523	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.7	fisher_strand_p_value=0.700245	frequency=4.167e-01	ks_quality_p_value=0.92664	major_base=G	major_cov=31/32	major_frequency=5.833e-01	minor_base=A	minor_cov=24/21	new_cov=24/21	polymorphism_frequency=4.167e-01	polymorphism_score=119.5	prediction=polymorphism	ref_cov=31/32	total_cov=55/54
RA	317	.	NC_000913	1429682	0	T	G	bias_e_value=4356840	bias_p_value=0.938641	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.0	fisher_strand_p_value=0.703137	frequency=4.587e-01	ks_quality_p_value=0.954013	major_base=T	major_cov=32/27	major_frequency=5.413e-01	minor_base=G	minor_cov=25/25	new_cov=25/25	polymorphism_frequency=4.587e-01	polymorphism_score=148.4	prediction=polymorphism	ref_cov=32/27	total_cov=57/52
RA	318	.	NC_000913	1429692	0	T	A	bias_e_value=3040590	bias_p_value=0.655066	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.4	fisher_strand_p_value=0.353247	frequency=4.783e-01	ks_quality_p_value=0.834962	major_base=T	major_cov=35/25	major_frequency=5.217e-01	minor_base=A	minor_cov=27/28	new_cov=27/28	polymorphism_frequency=4.783e-01	polymorphism_score=187.8	prediction=polymorphism	ref_cov=35/25	total_cov=62/53
RA	319	.	NC_000913	1429702	0	A	C	bias_e_value=679958	bias_p_value=0.14649	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.2	fisher_strand_p_value=0.356877	frequency=5.172e-01	ks_quality_p_value=0.0932247	major_base=C	major_cov=30/30	major_frequency=5.172e-01	minor_base=A	minor_cov=33/23	new_cov=30/30	polymorphism_frequency=5.172e-01	polymorphism_score=168.2	prediction=polymorphism	ref_cov=33/23	total_cov=63/53
RA	320	.	NC_000913	1429708	0	A	G	bias_e_value=880694	bias_p_value=0.189737	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.0	fisher_strand_p_value=0.359137	frequency=5.210e-01	ks_quality_p_value=0.129987	major_base=G	major_cov=30/32	major_frequency=5.210e-01	minor_base=A	minor_cov=33/24	new_cov=30/32	polymorphism_frequency=5.210e-01	polymorphism_score=172.9	prediction=polymorphism	ref_cov=33/24	total_cov=64/56
RA	321	.	NC_000913	1429714	0	A	C	bias_e_value=1197460	bias_p_value=0.257982	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.8	fisher_strand_p_value=0.581141	frequency=5.294e-01	ks_quality_p_value=0.121642	major_base=C	major_cov=32/31	major_frequency=5.294e-01	minor_base=A	minor_cov=32/24	new_cov=32/31	polymorphism_frequency=5.294e-01	polymorphism_score=168.4	prediction=polymorphism	ref_cov=32/24	total_cov=64/55
RA	322	.	NC_000913	1429724	0	A	G	bias_e_value=2723230	bias_p_value=0.586693	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.4	fisher_strand_p_value=0.474259	frequency=5.120e-01	ks_quality_p_value=0.512263	major_base=G	major_cov=32/32	major_frequency=5.120e-01	minor_base=A	minor_cov=35/26	new_cov=32/32	polymorphism_frequency=5.120e-01	polymorphism_score=172.6	prediction=polymorphism	ref_cov=35/26	total_cov=67/58
RA	323	.	NC_000913	1429732	0	G	A	bias_e_value=3121620	bias_p_value=0.672524	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.6	fisher_strand_p_value=0.368255	frequency=4.959e-01	ks_quality_p_value=0.84055	major_base=G	major_cov=36/26	major_frequency=5.041e-01	minor_base=A	minor_cov=30/31	new_cov=30/31	polymorphism_frequency=4.959e-01	polymorphism_score=174.8	prediction=polymorphism	ref_cov=36/26	total_cov=66/57
RA	324	.	NC_000913	1429735	0	A	G	bias_e_value=844614	bias_p_value=0.181964	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.9	fisher_strand_p_value=0.468097	frequency=5.000e-01	ks_quality_p_value=0.0943583	major_base=G	major_cov=30/31	major_frequency=5.000e-01	minor_base=A	minor_cov=35/26	new_cov=30/31	polymorphism_frequency=5.000e-01	polymorphism_score=181.4	prediction=polymorphism	ref_cov=35/26	total_cov=65/57
RA	325	.	NC_000913	1429741	0	A	G	bias_e_value=2109440	bias_p_value=0.454458	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.4	fisher_strand_p_value=0.574211	frequency=4.513e-01	ks_quality_p_value=0.279828	major_base=A	major_cov=34/28	major_frequency=5.487e-01	minor_base=G	minor_cov=25/26	new_cov=25/26	polymorphism_frequency=4.513e-01	polymorphism_score=152.0	prediction=polymorphism	ref_cov=34/28	total_cov=59/55
RA	326	.	NC_000913	1429744	0	T	C	bias_e_value=4135540	bias_p_value=0.890962	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.6	fisher_strand_p_value=0.570988	frequency=4.595e-01	ks_quality_p_value=1	major_base=T	major_cov=33/27	major_frequency=5.405e-01	minor_base=C	minor_cov=25/26	new_cov=25/26	polymorphism_frequency=4.595e-01	polymorphism_score=143.6	prediction=polymorphism	ref_cov=33/27	total_cov=58/55
RA	327	.	NC_000913	1429747	0	G	C	bias_e_value=3867980	bias_p_value=0.833319	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.1	fisher_strand_p_value=0.705249	frequency=4.685e-01	ks_quality_p_value=0.682574	major_base=G	major_cov=31/28	major_frequency=5.315e-01	minor_base=C	minor_cov=25/27	new_cov=25/27	polymorphism_frequency=4.685e-01	polymorphism_score=186.3	prediction=polymorphism	ref_cov=31/28	total_cov=57/55
RA	328	.	NC_000913	1429750	0	C	T	bias_e_value=900907	bias_p_value=0.194092	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.5	fisher_strand_p_value=0.848662	frequency=4.727e-01	ks_quality_p_value=0.0566906	major_base=C	major_cov=30/28	major_frequency=5.273e-01	minor_base=T	minor_cov=25/27	new_cov=25/27	polymorphism_frequency=4.727e-01	polymorphism_score=152.6	prediction=polymorphism	ref_cov=30/28	total_cov=55/55
RA	329	.	NC_000913	1429753	0	G	A	bias_e_value=184814	bias_p_value=0.0398163	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.7	fisher_strand_p_value=0.697843	frequency=4.952e-01	ks_quality_p_value=0.0094805	major_base=G	major_cov=28/25	major_frequency=5.048e-01	minor_base=A	minor_cov=25/27	new_cov=25/27	polymorphism_frequency=4.952e-01	polymorphism_score=161.6	prediction=polymorphism	ref_cov=28/25	total_cov=53/52
RA	330	.	NC_000913	1429756	0	C	A	bias_e_value=33538.1	bias_p_value=0.00722547	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.3	fisher_strand_p_value=0.697843	frequency=4.952e-01	ks_quality_p_value=0.00129248	major_base=C	major_cov=28/25	major_frequency=5.048e-01	minor_base=A	minor_cov=25/27	new_cov=25/27	polymorphism_frequency=4.952e-01	polymorphism_score=171.7	prediction=polymorphism	ref_cov=28/25	total_cov=53/52
RA	331	.	NC_000913	1429759	0	G	A	bias_e_value=429768	bias_p_value=0.0925895	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.8	fisher_strand_p_value=0.559935	frequency=4.906e-01	ks_quality_p_value=0.0331626	major_base=G	major_cov=30/24	major_frequency=5.094e-01	minor_base=A	minor_cov=25/27	new_cov=25/27	polymorphism_frequency=4.906e-01	polymorphism_score=159.1	prediction=polymorphism	ref_cov=30/24	total_cov=55/52
RA	332	.	NC_000913	1429767	0	C	T	bias_e_value=2847050	bias_p_value=0.613369	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.4	fisher_strand_p_value=0.847261	frequency=4.722e-01	ks_quality_p_value=0.309623	major_base=C	major_cov=30/27	major_frequency=5.278e-01	minor_base=T	minor_cov=25/26	new_cov=25/26	polymorphism_frequency=4.722e-01	polymorphism_score=135.5	prediction=polymorphism	ref_cov=30/27	total_cov=55/54
RA	333	.	NC_000913	1429780	0	A	G	bias_e_value=1338920	bias_p_value=0.288458	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.9	fisher_strand_p_value=0.437059	frequency=4.667e-01	ks_quality_p_value=0.188876	major_base=A	major_cov=31/25	major_frequency=5.333e-01	minor_base=G	minor_cov=23/26	new_cov=23/26	polymorphism_frequency=4.667e-01	polymorphism_score=155.4	prediction=polymorphism	ref_cov=31/25	total_cov=54/51
RA	334	.	NC_000913	1429783	0	G	A	bias_e_value=137447	bias_p_value=0.0296117	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.0	fisher_strand_p_value=0.441	frequency=4.579e-01	ks_quality_p_value=0.0105387	major_base=G	major_cov=32/26	major_frequency=5.421e-01	minor_base=A	minor_cov=23/26	new_cov=23/26	polymorphism_frequency=4.579e-01	polymorphism_score=146.5	prediction=polymorphism	ref_cov=32/26	total_cov=55/52
RA	335	.	NC_000913	1429816	0	C	T	bias_e_value=2327620	bias_p_value=0.501464	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.5	fisher_strand_p_value=0.298831	frequency=3.700e-01	ks_quality_p_value=0.627633	major_base=C	major_cov=37/26	major_frequency=6.300e-01	minor_base=T	minor_cov=17/20	new_cov=17/20	polymorphism_frequency=3.700e-01	polymorphism_score=103.5	prediction=polymorphism	ref_cov=37/26	total_cov=54/46
RA	336	.	NC_000913	1429820	0	A	G	bias_e_value=506868	bias_p_value=0.1092	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.4	fisher_strand_p_value=0.295008	frequency=3.646e-01	ks_quality_p_value=0.0774594	major_base=A	major_cov=35/26	major_frequency=6.354e-01	minor_base=G	minor_cov=16/19	new_cov=16/19	polymorphism_frequency=3.646e-01	polymorphism_score=102.5	prediction=polymorphism	ref_cov=35/26	total_cov=51/46
RA	337	.	NC_000913	1429823	0	A	C	bias_e_value=2650580	bias_p_value=0.571043	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.6	fisher_strand_p_value=0.528284	frequency=3.711e-01	ks_quality_p_value=0.439271	major_base=A	major_cov=34/27	major_frequency=6.289e-01	minor_base=C	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=3.711e-01	polymorphism_score=99.4	prediction=polymorphism	ref_cov=34/27	total_cov=51/46
RA	338	.	NC_000913	1429851	0	G	A	bias_e_value=1523.46	bias_p_value=0.000328216	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.2	fisher_strand_p_value=0.166969	frequency=2.921e-01	ks_quality_p_value=0.000171518	major_base=G	major_cov=35/28	major_frequency=7.079e-01	minor_base=A	minor_cov=10/16	new_cov=10/16	polymorphism_frequency=2.921e-01	polymorphism_score=72.0	prediction=polymorphism	ref_cov=35/28	total_cov=45/44
RA	339	.	NC_000913	1429858	0	C	T	bias_e_value=36220.5	bias_p_value=0.00780336	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.3	fisher_strand_p_value=0.210581	frequency=2.500e-01	ks_quality_p_value=0.00467709	major_base=C	major_cov=35/28	major_frequency=7.500e-01	minor_base=T	minor_cov=8/13	new_cov=8/13	polymorphism_frequency=2.500e-01	polymorphism_score=52.4	prediction=polymorphism	ref_cov=35/28	total_cov=43/41
RA	340	.	NC_000913	1429861	0	G	C	bias_e_value=736644	bias_p_value=0.158703	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.1	fisher_strand_p_value=0.141159	frequency=2.500e-01	ks_quality_p_value=0.261513	major_base=G	major_cov=36/27	major_frequency=7.500e-01	minor_base=C	minor_cov=8/13	new_cov=8/13	polymorphism_frequency=2.500e-01	polymorphism_score=67.0	prediction=polymorphism	ref_cov=36/27	total_cov=44/41
RA	341	.	NC_000913	1429863	0	A	G	bias_e_value=1594110	bias_p_value=0.343436	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.3	fisher_strand_p_value=0.216124	frequency=2.471e-01	ks_quality_p_value=0.489507	major_base=A	major_cov=35/29	major_frequency=7.529e-01	minor_base=G	minor_cov=8/13	new_cov=8/13	polymorphism_frequency=2.471e-01	polymorphism_score=49.1	prediction=polymorphism	ref_cov=35/29	total_cov=44/42
RA	342	.	NC_000913	1429888	0	C	T	bias_e_value=655859	bias_p_value=0.141299	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.7	fisher_strand_p_value=0.791582	frequency=2.118e-01	ks_quality_p_value=0.0401153	major_base=C	major_cov=34/33	major_frequency=7.882e-01	minor_base=T	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=2.118e-01	polymorphism_score=41.5	prediction=polymorphism	ref_cov=34/33	total_cov=43/43
RA	343	.	NC_000913	1431884	0	A	C	bias_e_value=1446900	bias_p_value=0.311721	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.5	fisher_strand_p_value=0.669319	frequency=2.069e-01	ks_quality_p_value=0.137586	major_base=A	major_cov=14/9	major_frequency=7.931e-01	minor_base=C	minor_cov=3/3	new_cov=3/3	polymorphism_frequency=2.069e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=14/9	total_cov=17/12
RA	344	.	NC_000913	1440381	0	G	A	bias_e_value=875696	bias_p_value=0.18866	consensus_score=98.2	fisher_strand_p_value=0.046332	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=19/14	major_frequency=8.919e-01	minor_base=C	minor_cov=0/4	new_cov=19/14	polymorphism_frequency=8.919e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/1	total_cov=20/19
RA	345	.	NC_000913	1494388	0	C	.	bias_e_value=3635050	bias_p_value=0.783137	consensus_score=192.8	fisher_strand_p_value=0.418605	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=17/25	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=17/25	polymorphism_frequency=9.767e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=18/25
RA	346	.	NC_000913	1517508	0	G	T	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=96.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99754	major_base=T	major_cov=18/10	major_frequency=9.655e-01	minor_base=G	minor_cov=1/0	new_cov=18/10	polymorphism_frequency=9.655e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=1/0	total_cov=19/10
RA	347	.	NC_000913	1541357	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=122.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/18	major_frequency=9.722e-01	minor_base=C	minor_cov=0/1	new_cov=17/18	polymorphism_frequency=9.722e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/1	total_cov=17/19
RA	348	.	NC_000913	1543636	0	C	T	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=107.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998108	major_base=T	major_cov=15/17	major_frequency=9.697e-01	minor_base=G	minor_cov=0/1	new_cov=15/17	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/18
RA	349	.	NC_000913	1547154	0	C	T	consensus_score=70.7	frequency=1	major_base=T	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	350	.	NC_000913	1551766	0	C	T	consensus_score=67.5	frequency=1	major_base=T	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	351	.	NC_000913	1552228	0	G	A	consensus_score=105.7	frequency=1	major_base=A	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	352	.	NC_000913	1556181	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=88.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/15	major_frequency=9.630e-01	minor_base=A	minor_cov=0/1	new_cov=11/15	polymorphism_frequency=9.630e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=11/16
RA	353	.	NC_000913	1565918	0	G	A	bias_e_value=3277710	bias_p_value=0.706153	consensus_score=57.6	fisher_strand_p_value=0.391304	frequency=1	ks_quality_p_value=0.867368	major_base=A	major_cov=14/8	major_frequency=9.565e-01	minor_base=C	minor_cov=0/1	new_cov=14/8	polymorphism_frequency=9.565e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/0	total_cov=14/9
RA	354	.	NC_000913	1566497	0	G	A	consensus_score=87.9	frequency=1	major_base=A	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	355	.	NC_000913	1567076	0	G	A	consensus_score=57.5	frequency=1	major_base=A	major_cov=10/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/10
RA	356	.	NC_000913	1567651	0	G	A	consensus_score=54.5	frequency=1	major_base=A	major_cov=5/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/13
RA	357	.	NC_000913	1568442	0	G	A	bias_e_value=3485830	bias_p_value=0.750989	consensus_score=81.6	fisher_strand_p_value=0.384615	frequency=1	ks_quality_p_value=0.996928	major_base=A	major_cov=9/16	major_frequency=9.615e-01	minor_base=C	minor_cov=1/0	new_cov=9/16	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/16
RA	358	.	NC_000913	1569555	0	G	A	bias_e_value=3085890	bias_p_value=0.664825	consensus_score=108.2	fisher_strand_p_value=0.30303	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=9/23	major_frequency=9.697e-01	minor_base=C	minor_cov=1/0	new_cov=9/23	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/23
RA	359	.	NC_000913	1579410	0	G	A	consensus_score=62.7	frequency=1	major_base=A	major_cov=11/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/8
RA	360	.	NC_000913	1583650	0	G	A	consensus_score=37.0	frequency=1	major_base=A	major_cov=7/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	361	.	NC_000913	1585196	0	G	A	consensus_score=131.0	frequency=1	major_base=A	major_cov=23/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/17
RA	362	.	NC_000913	1589830	0	T	C	consensus_score=77.9	frequency=1	major_base=C	major_cov=13/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/8
RA	363	.	NC_000913	1634482	0	T	C	bias_e_value=2992180	bias_p_value=0.644636	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.1	fisher_strand_p_value=1	frequency=4.444e-01	ks_quality_p_value=0.286505	major_base=T	major_cov=5/5	major_frequency=5.556e-01	minor_base=C	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=4.444e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=5/5	total_cov=9/9
RA	364	.	NC_000913	1634484	0	G	T	bias_e_value=4409350	bias_p_value=0.949952	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.2	fisher_strand_p_value=1	frequency=4.444e-01	ks_quality_p_value=0.700784	major_base=G	major_cov=5/5	major_frequency=5.556e-01	minor_base=T	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=4.444e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=5/5	total_cov=9/9
RA	365	.	NC_000913	1634569	0	A	T	bias_e_value=3867090	bias_p_value=0.833128	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.3	fisher_strand_p_value=0.768311	frequency=4.889e-01	ks_quality_p_value=0.626208	major_base=A	major_cov=12/11	major_frequency=5.111e-01	minor_base=T	minor_cov=10/12	new_cov=10/12	polymorphism_frequency=4.889e-01	polymorphism_score=75.3	prediction=polymorphism	ref_cov=12/11	total_cov=22/24
RA	366	.	NC_000913	1634571	0	C	T	bias_e_value=3484760	bias_p_value=0.750759	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.3	fisher_strand_p_value=0.768311	frequency=5.000e-01	ks_quality_p_value=0.498749	major_base=C	major_cov=12/11	major_frequency=5.000e-01	minor_base=T	minor_cov=10/13	new_cov=10/13	polymorphism_frequency=5.000e-01	polymorphism_score=68.3	prediction=polymorphism	ref_cov=12/11	total_cov=22/24
RA	367	.	NC_000913	1634578	0	T	C	bias_e_value=1253560	bias_p_value=0.270068	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.5	fisher_strand_p_value=0.396484	frequency=5.306e-01	ks_quality_p_value=0.18994	major_base=C	major_cov=10/16	major_frequency=5.306e-01	minor_base=T	minor_cov=12/11	new_cov=10/16	polymorphism_frequency=5.306e-01	polymorphism_score=62.8	prediction=polymorphism	ref_cov=12/11	total_cov=22/27
RA	368	.	NC_000913	1634597	0	C	A	bias_e_value=3275420	bias_p_value=0.705657	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.6	fisher_strand_p_value=0.414236	frequency=5.283e-01	ks_quality_p_value=0.818245	major_base=A	major_cov=12/16	major_frequency=5.283e-01	minor_base=C	minor_cov=14/11	new_cov=12/16	polymorphism_frequency=5.283e-01	polymorphism_score=81.6	prediction=polymorphism	ref_cov=14/11	total_cov=26/27
RA	369	.	NC_000913	1634658	0	A	G	bias_e_value=3931160	bias_p_value=0.846931	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.3	fisher_strand_p_value=0.605807	frequency=4.915e-01	ks_quality_p_value=0.826197	major_base=A	major_cov=17/13	major_frequency=5.085e-01	minor_base=G	minor_cov=14/15	new_cov=14/15	polymorphism_frequency=4.915e-01	polymorphism_score=77.1	prediction=polymorphism	ref_cov=17/13	total_cov=31/29
RA	370	.	NC_000913	1634661	0	C	G	bias_e_value=1244320	bias_p_value=0.268078	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.1	fisher_strand_p_value=0.793038	frequency=5.172e-01	ks_quality_p_value=0.0939933	major_base=G	major_cov=14/16	major_frequency=5.172e-01	minor_base=C	minor_cov=15/13	new_cov=14/16	polymorphism_frequency=5.172e-01	polymorphism_score=104.6	prediction=polymorphism	ref_cov=15/13	total_cov=31/29
RA	371	.	NC_000913	1634676	0	A	G	bias_e_value=2625620	bias_p_value=0.565665	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.4	fisher_strand_p_value=0.435721	frequency=5.179e-01	ks_quality_p_value=0.524184	major_base=G	major_cov=14/15	major_frequency=5.179e-01	minor_base=A	minor_cov=16/11	new_cov=14/15	polymorphism_frequency=5.179e-01	polymorphism_score=70.6	prediction=polymorphism	ref_cov=16/11	total_cov=30/26
RA	372	.	NC_000913	1634699	0	A	C	bias_e_value=1965550	bias_p_value=0.42346	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.8	fisher_strand_p_value=0.266831	frequency=5.000e-01	ks_quality_p_value=0.540433	major_base=A	major_cov=16/10	major_frequency=5.000e-01	minor_base=C	minor_cov=11/15	new_cov=11/15	polymorphism_frequency=5.000e-01	polymorphism_score=81.3	prediction=polymorphism	ref_cov=16/10	total_cov=27/25
RA	373	.	NC_000913	1634724	0	G	A	bias_e_value=3368070	bias_p_value=0.725619	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.1	fisher_strand_p_value=0.364044	frequency=5.349e-01	ks_quality_p_value=0.983057	major_base=A	major_cov=10/13	major_frequency=5.349e-01	minor_base=G	minor_cov=12/8	new_cov=10/13	polymorphism_frequency=5.349e-01	polymorphism_score=54.8	prediction=polymorphism	ref_cov=12/8	total_cov=22/21
RA	374	.	NC_000913	1634769	0	T	A	bias_e_value=1913690	bias_p_value=0.412287	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.1	fisher_strand_p_value=0.476451	frequency=4.688e-01	ks_quality_p_value=0.290678	major_base=T	major_cov=11/6	major_frequency=5.312e-01	minor_base=A	minor_cov=7/8	new_cov=7/8	polymorphism_frequency=4.688e-01	polymorphism_score=47.1	prediction=polymorphism	ref_cov=11/6	total_cov=18/14
RA	375	.	NC_000913	1634778	0	T	G	bias_e_value=4440690	bias_p_value=0.956704	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.1	fisher_strand_p_value=0.721266	frequency=4.375e-01	ks_quality_p_value=0.999008	major_base=T	major_cov=11/7	major_frequency=5.625e-01	minor_base=G	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=4.375e-01	polymorphism_score=31.7	prediction=polymorphism	ref_cov=11/7	total_cov=18/14
RA	376	.	NC_000913	1634799	0	A	G	bias_e_value=4428400	bias_p_value=0.954057	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.5	fisher_strand_p_value=1	frequency=3.200e-01	ks_quality_p_value=0.712608	major_base=A	major_cov=9/8	major_frequency=6.800e-01	minor_base=G	minor_cov=5/3	new_cov=5/3	polymorphism_frequency=3.200e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=9/8	total_cov=14/11
RA	377	.	NC_000913	1635974	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.0	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=1	major_base=G	major_cov=15/11	major_frequency=5.000e-01	minor_base=T	minor_cov=14/12	new_cov=15/11	polymorphism_frequency=5.000e-01	polymorphism_score=66.3	prediction=polymorphism	ref_cov=14/12	total_cov=29/23
RA	378	.	NC_000913	1636068	0	T	C	bias_e_value=3194160	bias_p_value=0.688151	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.3	fisher_strand_p_value=0.789073	frequency=5.000e-01	ks_quality_p_value=0.409484	major_base=T	major_cov=14/14	major_frequency=5.000e-01	minor_base=C	minor_cov=16/12	new_cov=16/12	polymorphism_frequency=5.000e-01	polymorphism_score=90.2	prediction=polymorphism	ref_cov=14/14	total_cov=30/26
RA	379	.	NC_000913	1636074	0	C	T	bias_e_value=4530260	bias_p_value=0.976002	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.3	fisher_strand_p_value=0.789073	frequency=5.091e-01	ks_quality_p_value=1	major_base=T	major_cov=16/12	major_frequency=5.091e-01	minor_base=C	minor_cov=14/13	new_cov=16/12	polymorphism_frequency=5.091e-01	polymorphism_score=74.7	prediction=polymorphism	ref_cov=14/13	total_cov=30/25
RA	380	.	NC_000913	1636128	0	C	T	bias_e_value=3741940	bias_p_value=0.806165	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.5	fisher_strand_p_value=0.554146	frequency=3.725e-01	ks_quality_p_value=0.804949	major_base=C	major_cov=18/14	major_frequency=6.275e-01	minor_base=T	minor_cov=13/6	new_cov=13/6	polymorphism_frequency=3.725e-01	polymorphism_score=46.5	prediction=polymorphism	ref_cov=18/14	total_cov=31/20
RA	381	.	NC_000913	1636145	0	T	C	bias_e_value=1497940	bias_p_value=0.322717	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.9	fisher_strand_p_value=0.105579	frequency=3.043e-01	ks_quality_p_value=0.916361	major_base=T	major_cov=16/16	major_frequency=6.957e-01	minor_base=C	minor_cov=11/3	new_cov=11/3	polymorphism_frequency=3.043e-01	polymorphism_score=33.6	prediction=polymorphism	ref_cov=16/16	total_cov=27/19
RA	382	.	NC_000913	1636173	0	T	C	bias_e_value=1554660	bias_p_value=0.334936	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.0	fisher_strand_p_value=0.103573	frequency=2.162e-01	ks_quality_p_value=0.985199	major_base=T	major_cov=14/15	major_frequency=7.838e-01	minor_base=C	minor_cov=7/1	new_cov=7/1	polymorphism_frequency=2.162e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=14/15	total_cov=21/17
RA	383	.	NC_000913	1636382	0	C	A	bias_e_value=3812740	bias_p_value=0.821419	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.6	fisher_strand_p_value=1	frequency=2.353e-01	ks_quality_p_value=0.465471	major_base=C	major_cov=12/14	major_frequency=7.647e-01	minor_base=A	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=2.353e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=12/14	total_cov=15/20
RA	384	.	NC_000913	1636413	0	C	A	bias_e_value=4604470	bias_p_value=0.991989	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.1	fisher_strand_p_value=1	frequency=3.158e-01	ks_quality_p_value=0.876119	major_base=C	major_cov=12/14	major_frequency=6.842e-01	minor_base=A	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=3.158e-01	polymorphism_score=28.7	prediction=polymorphism	ref_cov=12/14	total_cov=18/20
RA	385	.	NC_000913	1636423	0	T	C	bias_e_value=2325170	bias_p_value=0.500936	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.6	fisher_strand_p_value=1	frequency=3.478e-01	ks_quality_p_value=0.18724	major_base=T	major_cov=15/15	major_frequency=6.522e-01	minor_base=C	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=3.478e-01	polymorphism_score=40.5	prediction=polymorphism	ref_cov=15/15	total_cov=23/23
RA	386	.	NC_000913	1636455	0	G	A	bias_e_value=3383540	bias_p_value=0.728951	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.4	fisher_strand_p_value=1	frequency=3.673e-01	ks_quality_p_value=0.361134	major_base=G	major_cov=14/17	major_frequency=6.327e-01	minor_base=A	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=3.673e-01	polymorphism_score=49.1	prediction=polymorphism	ref_cov=14/17	total_cov=22/27
RA	387	.	NC_000913	1636484	0	C	T	bias_e_value=3804990	bias_p_value=0.81975	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.0	fisher_strand_p_value=0.572937	frequency=4.583e-01	ks_quality_p_value=0.808631	major_base=C	major_cov=13/13	major_frequency=5.417e-01	minor_base=T	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=4.583e-01	polymorphism_score=59.3	prediction=polymorphism	ref_cov=13/13	total_cov=22/26
RA	388	.	NC_000913	1636503	0	T	C	bias_e_value=3514480	bias_p_value=0.757162	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.6	fisher_strand_p_value=0.407429	frequency=4.400e-01	ks_quality_p_value=0.957053	major_base=T	major_cov=15/13	major_frequency=5.600e-01	minor_base=C	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=4.400e-01	polymorphism_score=60.9	prediction=polymorphism	ref_cov=15/13	total_cov=24/27
RA	389	.	NC_000913	1652331	0	T	C	consensus_score=62.9	frequency=1	major_base=C	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	390	.	NC_000913	1667887	0	C	.	consensus_score=139.5	frequency=1	major_base=.	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	391	.	NC_000913	1744751	0	C	.	consensus_score=128.1	frequency=1	major_base=.	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	392	.	NC_000913	1978243	0	G	T	consensus_score=80.4	frequency=1	major_base=T	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	393	.	NC_000913	2003264	0	C	T	consensus_score=85.7	frequency=1	major_base=T	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	394	.	NC_000913	2032423	0	G	A	bias_e_value=4640470	bias_p_value=0.999745	consensus_score=115.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.977497	major_base=A	major_cov=16/21	major_frequency=9.737e-01	minor_base=G	minor_cov=0/1	new_cov=16/21	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=16/22
RA	395	.	NC_000913	2095057	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=97.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=11/17	major_frequency=9.333e-01	minor_base=G	minor_cov=1/1	new_cov=11/17	polymorphism_frequency=9.333e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/1	total_cov=13/18
RA	396	.	NC_000913	2173363	0	C	.	bias_e_value=852483	bias_p_value=0.183659	consensus_score=91.4	fisher_strand_p_value=0.0689655	frequency=1	ks_quality_p_value=0.648344	major_base=.	major_cov=20/6	major_frequency=8.667e-01	minor_base=C	minor_cov=1/3	new_cov=20/6	polymorphism_frequency=8.667e-01	polymorphism_score=12.5	prediction=consensus	ref_cov=1/3	total_cov=21/9
RA	397	.	NC_000913	2173364	0	C	.	bias_e_value=1173950	bias_p_value=0.252917	consensus_score=93.9	fisher_strand_p_value=0.0689655	frequency=1	ks_quality_p_value=0.997439	major_base=.	major_cov=20/6	major_frequency=8.667e-01	minor_base=C	minor_cov=1/3	new_cov=20/6	polymorphism_frequency=8.667e-01	polymorphism_score=10.0	prediction=consensus	ref_cov=1/3	total_cov=21/9
RA	398	.	NC_000913	2242121	0	A	G	consensus_score=141.7	frequency=1	major_base=G	major_cov=25/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/16
RA	399	.	NC_000913	2342582	0	C	T	consensus_score=230.4	frequency=1	major_base=T	major_cov=37/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/31
RA	400	.	NC_000913	2397444	0	G	A	consensus_score=180.6	frequency=1	major_base=A	major_cov=29/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/22
RA	401	.	NC_000913	3102348	0	G	A	bias_e_value=4639320	bias_p_value=0.999497	consensus_score=121.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.968457	major_base=A	major_cov=25/14	major_frequency=9.750e-01	minor_base=C	minor_cov=1/0	new_cov=25/14	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/14
RA	402	.	NC_000913	3199005	0	G	A	consensus_score=182.9	frequency=1	major_base=A	major_cov=26/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/25
RA	403	.	NC_000913	3247458	0	C	T	consensus_score=89.9	frequency=1	major_base=T	major_cov=10/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/19
RA	404	.	NC_000913	3268970	0	A	G	bias_e_value=3732800	bias_p_value=0.804196	consensus_score=76.6	fisher_strand_p_value=0.458333	frequency=1	ks_quality_p_value=0.967917	major_base=G	major_cov=13/10	major_frequency=9.583e-01	minor_base=A	minor_cov=0/1	new_cov=13/10	polymorphism_frequency=9.583e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/1	total_cov=13/11
RA	405	.	NC_000913	3308736	0	C	T	consensus_score=107.6	frequency=1	major_base=T	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	406	.	NC_000913	3324164	0	C	T	consensus_score=124.9	frequency=1	major_base=T	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	407	.	NC_000913	3355173	0	C	T	consensus_score=157.2	frequency=1	major_base=T	major_cov=32/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/16
RA	408	.	NC_000913	3410690	0	C	T	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=178.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996868	major_base=T	major_cov=24/26	major_frequency=9.804e-01	minor_base=G	minor_cov=0/1	new_cov=24/26	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	409	.	NC_000913	3450107	0	C	T	consensus_score=159.3	frequency=1	major_base=T	major_cov=16/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/28
RA	410	.	NC_000913	3486205	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=143.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/22	major_frequency=9.773e-01	minor_base=C	minor_cov=1/0	new_cov=21/22	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=22/23
RA	411	.	NC_000913	3491417	0	C	T	consensus_score=119.3	frequency=1	major_base=T	major_cov=23/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/16
RA	412	.	NC_000913	3496203	0	A	G	consensus_score=203.1	frequency=1	major_base=G	major_cov=35/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/25
RA	413	.	NC_000913	3524603	0	C	T	bias_e_value=4510170	bias_p_value=0.971673	consensus_score=172.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.771623	major_base=T	major_cov=25/29	major_frequency=9.643e-01	minor_base=C	minor_cov=1/1	new_cov=25/29	polymorphism_frequency=9.643e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=1/1	total_cov=26/30
RA	414	.	NC_000913	3528272	0	C	T	consensus_score=169.0	frequency=1	major_base=T	major_cov=28/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/23
RA	415	.	NC_000913	3560455	1	.	G	consensus_score=152.8	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	416	.	NC_000913	3615427	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=180.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/21	major_frequency=9.661e-01	minor_base=C	minor_cov=1/1	new_cov=36/21	polymorphism_frequency=9.661e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=37/23
RA	417	.	NC_000913	3631349	0	C	T	consensus_score=59.1	frequency=1	major_base=T	major_cov=7/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/12
RA	418	.	NC_000913	3651423	0	C	T	consensus_score=100.3	frequency=1	major_base=T	major_cov=18/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	419	.	NC_000913	3657207	0	C	T	consensus_score=92.9	frequency=1	major_base=T	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	420	.	NC_000913	3673046	0	C	T	bias_e_value=3191360	bias_p_value=0.687549	consensus_score=95.9	fisher_strand_p_value=0.322581	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/9	major_frequency=9.677e-01	minor_base=C	minor_cov=0/1	new_cov=21/9	polymorphism_frequency=9.677e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/1	total_cov=21/10
RA	421	.	NC_000913	3722654	0	C	T	bias_e_value=1881500	bias_p_value=0.405352	consensus_score=198.6	fisher_strand_p_value=0.135009	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/20	major_frequency=9.661e-01	minor_base=G	minor_cov=0/2	new_cov=37/20	polymorphism_frequency=9.661e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/22
RA	422	.	NC_000913	3745917	0	C	T	consensus_score=73.2	frequency=1	major_base=T	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	423	.	NC_000913	3749174	0	C	T	bias_e_value=1782000	bias_p_value=0.383915	consensus_score=103.5	fisher_strand_p_value=0.125	frequency=1	ks_quality_p_value=0.996098	major_base=T	major_cov=10/21	major_frequency=9.394e-01	minor_base=C	minor_cov=2/0	new_cov=10/21	polymorphism_frequency=9.394e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=2/0	total_cov=12/21
RA	424	.	NC_000913	3758605	0	C	T	bias_e_value=4634200	bias_p_value=0.998395	consensus_score=273.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.943878	major_base=T	major_cov=38/38	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=38/38	polymorphism_frequency=9.870e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=39/38
RA	425	.	NC_000913	3771296	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=87.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/18	major_frequency=9.394e-01	minor_base=G	minor_cov=1/1	new_cov=13/18	polymorphism_frequency=9.394e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/19
RA	426	.	NC_000913	3782917	0	G	A	bias_e_value=24599.9	bias_p_value=0.00529982	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.1	fisher_strand_p_value=0.000633646	frequency=2.889e-01	ks_quality_p_value=1	major_base=G	major_cov=11/21	major_frequency=7.111e-01	minor_base=A	minor_cov=12/1	new_cov=12/1	polymorphism_frequency=2.889e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=11/21	total_cov=23/22
RA	427	.	NC_000913	3799622	0	C	T	consensus_score=61.4	frequency=1	major_base=T	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	428	.	NC_000913	3805424	0	C	T	bias_e_value=3060200	bias_p_value=0.659292	consensus_score=65.7	fisher_strand_p_value=0.3	frequency=1	ks_quality_p_value=0.994751	major_base=T	major_cov=14/5	major_frequency=9.500e-01	minor_base=A	minor_cov=0/1	new_cov=14/5	polymorphism_frequency=9.500e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	429	.	NC_000913	3821074	0	C	T	bias_e_value=2491.08	bias_p_value=0.000536679	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.0	fisher_strand_p_value=5.64874e-05	frequency=2.708e-01	ks_quality_p_value=0.869979	major_base=C	major_cov=13/22	major_frequency=7.292e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.708e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=13/22	total_cov=28/22
RA	430	.	NC_000913	3828128	0	C	T	bias_e_value=3618910	bias_p_value=0.779661	consensus_score=108.0	fisher_strand_p_value=0.414634	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/16	major_frequency=9.756e-01	minor_base=G	minor_cov=0/1	new_cov=24/16	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/17
RA	431	.	NC_000913	3832051	0	C	T	bias_e_value=3662790	bias_p_value=0.789113	consensus_score=152.3	fisher_strand_p_value=0.425532	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/19	major_frequency=9.787e-01	minor_base=G	minor_cov=0/1	new_cov=27/19	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=28/20
RA	432	.	NC_000913	3838773	0	C	T	consensus_score=104.4	frequency=1	major_base=T	major_cov=18/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/11
RA	433	.	NC_000913	3844413	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=99.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/15	major_frequency=9.677e-01	minor_base=A	minor_cov=1/0	new_cov=15/15	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	434	.	NC_000913	3884712	0	C	T	consensus_score=121.7	frequency=1	major_base=T	major_cov=17/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/17
RA	435	.	NC_000913	3897890	0	C	T	consensus_score=92.5	frequency=1	major_base=T	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	436	.	NC_000913	3909886	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=147.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/15	major_frequency=9.778e-01	minor_base=C	minor_cov=1/0	new_cov=29/15	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/15
RA	437	.	NC_000913	3913050	0	G	A	bias_e_value=4618380	bias_p_value=0.994986	consensus_score=216.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.901542	major_base=A	major_cov=38/23	major_frequency=9.839e-01	minor_base=G	minor_cov=1/0	new_cov=38/23	polymorphism_frequency=9.839e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=39/23
RA	438	.	NC_000913	3996126	0	G	A	bias_e_value=3666530	bias_p_value=0.78992	consensus_score=237.6	fisher_strand_p_value=0.439394	frequency=1	ks_quality_p_value=0.970604	major_base=A	major_cov=28/37	major_frequency=9.848e-01	minor_base=C	minor_cov=1/0	new_cov=28/37	polymorphism_frequency=9.848e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/1	total_cov=29/38
RA	439	.	NC_000913	3997278	0	G	A	bias_e_value=4641540	bias_p_value=0.999975	consensus_score=163.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992966	major_base=A	major_cov=34/16	major_frequency=9.804e-01	minor_base=C	minor_cov=1/0	new_cov=34/16	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=35/18
RA	440	.	NC_000913	4012789	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=97.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=11/20	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=11/20	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=11/21
RA	441	.	NC_000913	4016990	0	G	A	consensus_score=172.5	frequency=1	major_base=A	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	442	.	NC_000913	4032219	0	G	A	bias_e_value=3769810	bias_p_value=0.812169	consensus_score=199.7	fisher_strand_p_value=0.45614	frequency=1	ks_quality_p_value=0.994377	major_base=A	major_cov=25/31	major_frequency=9.825e-01	minor_base=C	minor_cov=1/0	new_cov=25/31	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	443	.	NC_000913	4034217	0	G	A	consensus_score=72.8	frequency=1	major_base=A	major_cov=2/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/21
RA	444	.	NC_000913	4053512	0	G	A	bias_e_value=4641400	bias_p_value=0.999946	consensus_score=143.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.989601	major_base=A	major_cov=21/20	major_frequency=9.762e-01	minor_base=G	minor_cov=0/1	new_cov=21/20	polymorphism_frequency=9.762e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/1	total_cov=21/21
RA	445	.	NC_000913	4055224	0	G	A	consensus_score=218.5	frequency=1	major_base=A	major_cov=24/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/40
RA	446	.	NC_000913	4065293	0	G	A	consensus_score=78.5	frequency=1	major_base=A	major_cov=8/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/17
RA	447	.	NC_000913	4068287	0	G	A	consensus_score=153.1	frequency=1	major_base=A	major_cov=20/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/25
RA	448	.	NC_000913	4084595	0	G	A	bias_e_value=4641320	bias_p_value=0.999928	consensus_score=210.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988053	major_base=A	major_cov=34/30	major_frequency=9.846e-01	minor_base=C	minor_cov=1/0	new_cov=34/30	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	449	.	NC_000913	4085928	0	G	A	bias_e_value=3570130	bias_p_value=0.76915	consensus_score=144.9	fisher_strand_p_value=0.404762	frequency=1	ks_quality_p_value=0.995365	major_base=A	major_cov=16/25	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=16/25	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	450	.	NC_000913	4091821	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=118.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/13	major_frequency=9.714e-01	minor_base=C	minor_cov=1/0	new_cov=21/13	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/13
RA	451	.	NC_000913	4096215	0	G	A	consensus_score=186.9	frequency=1	major_base=A	major_cov=21/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/32
RA	452	.	NC_000913	4097175	0	G	A	consensus_score=143.6	frequency=1	major_base=A	major_cov=19/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/22
RA	453	.	NC_000913	4099805	0	C	T	consensus_score=132.5	frequency=1	major_base=T	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	454	.	NC_000913	4115968	0	G	A	bias_e_value=4641150	bias_p_value=0.999892	consensus_score=159.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985308	major_base=A	major_cov=25/21	major_frequency=9.787e-01	minor_base=C	minor_cov=1/0	new_cov=25/21	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=27/21
RA	455	.	NC_000913	4132970	0	G	A	bias_e_value=3946380	bias_p_value=0.850209	consensus_score=139.1	fisher_strand_p_value=0.505285	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/18	major_frequency=9.545e-01	minor_base=C	minor_cov=2/0	new_cov=24/18	polymorphism_frequency=9.545e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/18
RA	456	.	NC_000913	4146389	1	.	T	bias_e_value=4641600	bias_p_value=0.99999	consensus_score=125.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995499	major_base=T	major_cov=18/17	major_frequency=9.211e-01	minor_base=.	minor_cov=1/2	new_cov=18/17	polymorphism_frequency=9.211e-01	polymorphism_score=3.1	prediction=consensus	ref_cov=1/2	total_cov=19/19
RA	457	.	NC_000913	4161142	0	C	A	bias_e_value=146.547	bias_p_value=3.15722e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.3	fisher_strand_p_value=2.25476e-06	frequency=3.250e-01	ks_quality_p_value=1	major_base=C	major_cov=21/6	major_frequency=6.750e-01	minor_base=A	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=3.250e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=21/6	total_cov=21/20
RA	458	.	NC_000913	4161148	0	G	A	bias_e_value=0.0182866	bias_p_value=3.93968e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.1	fisher_strand_p_value=1.67578e-10	frequency=4.500e-01	ks_quality_p_value=1	major_base=G	major_cov=21/1	major_frequency=5.500e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=4.500e-01	polymorphism_score=25.2	prediction=polymorphism	ref_cov=21/1	total_cov=21/19
RA	459	.	NC_000913	4163609	0	G	A	consensus_score=119.0	frequency=1	major_base=A	major_cov=23/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/16
RA	460	.	NC_000913	4256061	0	C	T	bias_e_value=34.9646	bias_p_value=7.5328e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.3	fisher_strand_p_value=4.84747e-07	frequency=3.043e-01	ks_quality_p_value=1	major_base=C	major_cov=7/25	major_frequency=6.957e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=3.043e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=7/25	total_cov=21/25
RA	461	.	NC_000913	4256069	0	G	C	bias_e_value=17.5471	bias_p_value=3.78035e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.0	fisher_strand_p_value=2.32275e-07	frequency=3.111e-01	ks_quality_p_value=1	major_base=G	major_cov=6/25	major_frequency=6.889e-01	minor_base=C	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=3.111e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=6/25	total_cov=20/25
RA	462	.	NC_000913	4295679	0	G	A	bias_e_value=4640620	bias_p_value=0.999777	consensus_score=161.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.978966	major_base=A	major_cov=26/22	major_frequency=9.796e-01	minor_base=C	minor_cov=1/0	new_cov=26/22	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	463	.	NC_000913	4296380	1	.	C	consensus_score=79.9	frequency=1	major_base=C	major_cov=6/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/22
RA	464	.	NC_000913	4296380	2	.	G	consensus_score=77.9	frequency=1	major_base=G	major_cov=6/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/22
RA	465	.	NC_000913	4542683	0	T	.	consensus_score=80.0	frequency=1	major_base=.	major_cov=6/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/13
MC	466	.	NC_000913	257908	258683	764	0	left_inside_cov=0	left_outside_cov=29	right_inside_cov=2	right_outside_cov=31
MC	467	.	NC_000913	1196365	1211435	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=4	right_outside_cov=5
MC	468	.	NC_000913	1294035	1294175	0	0	left_inside_cov=0	left_outside_cov=19	right_inside_cov=0	right_outside_cov=19
MC	469	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=19	right_inside_cov=0	right_outside_cov=19
MC	470	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=47	right_inside_cov=0	right_outside_cov=16
MC	471	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=43	right_inside_cov=1	right_outside_cov=44
MC	472	.	NC_000913	3423891	3424434	342	196	left_inside_cov=4	left_outside_cov=5	right_inside_cov=3	right_outside_cov=5
MC	473	.	NC_000913	3682261	3682294	0	0	left_inside_cov=0	left_outside_cov=40	right_inside_cov=0	right_outside_cov=40
JC	474	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=244	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=225	max_left_minus=162	max_left_plus=225	max_min_left=106	max_min_left_minus=91	max_min_left_plus=106	max_min_right=96	max_min_right_minus=96	max_min_right_plus=79	max_pos_hash_score=490	max_right=239	max_right_minus=233	max_right_plus=239	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.36	new_junction_read_count=14	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14
JC	475	.	NC_000913	57276	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__57276__1__NC_000913__382590__-1__0____251__251__0__1	max_left=249	max_left_minus=249	max_left_plus=246	max_min_left=107	max_min_left_minus=107	max_min_left_plus=75	max_min_right=95	max_min_right_minus=95	max_min_right_plus=88	max_pos_hash_score=490	max_right=244	max_right_minus=229	max_right_plus=244	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.01	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=39
JC	476	.	NC_000913	57280	-1	NC_000913	381260	1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__57280__-1__NC_000913__381260__1__0____251__251__0__1	max_left=241	max_left_minus=238	max_left_plus=241	max_min_left=121	max_min_left_minus=121	max_min_left_plus=118	max_min_right=121	max_min_right_minus=121	max_min_right_plus=111	max_pos_hash_score=490	max_right=225	max_right_minus=223	max_right_plus=225	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=45	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=43
JC	477	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=15	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=230	max_min_left=110	max_min_left_minus=78	max_min_left_plus=110	max_min_right=91	max_min_right_minus=91	max_min_right_plus=59	max_pos_hash_score=474	max_right=234	max_right_minus=234	max_right_plus=147	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.77	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28
JC	478	.	NC_000913	257908	1	NC_000913	1907615	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__257908__1__NC_000913__1907615__1__0____251__251__1__0	max_left=237	max_left_minus=237	max_left_plus=237	max_min_left=115	max_min_left_minus=115	max_min_left_plus=86	max_min_right=120	max_min_right_minus=114	max_min_right_plus=120	max_pos_hash_score=490	max_right=247	max_right_minus=247	max_right_plus=243	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	479	.	NC_000913	279163	1	NC_000913	2666074	1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__279163__1__NC_000913__2666074__1__0____251__251__1__0	max_left=242	max_left_minus=242	max_left_plus=242	max_min_left=125	max_min_left_minus=125	max_min_left_plus=103	max_min_right=121	max_min_right_minus=121	max_min_right_plus=120	max_pos_hash_score=490	max_right=242	max_right_minus=242	max_right_plus=230	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.08	new_junction_read_count=42	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42
JC	480	.	NC_000913	291401	-1	NC_000913	2666082	-1	0	alignment_overlap=1	coverage_minus=20	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__291402__-1__NC_000913__2666082__-1__1____251__251__1__0	max_left=247	max_left_minus=247	max_left_plus=244	max_min_left=120	max_min_left_minus=113	max_min_left_plus=120	max_min_right=123	max_min_right_minus=123	max_min_right_plus=73	max_pos_hash_score=488	max_right=241	max_right_minus=241	max_right_plus=227	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=44	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=43
JC	481	.	NC_000913	381260	1	NC_000913	382183	-1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=244	key=NC_000913__381260__1__NC_000913__382183__-1__0____251__251__1__1	max_left=237	max_left_minus=237	max_left_plus=235	max_min_left=121	max_min_left_minus=99	max_min_left_plus=121	max_min_right=122	max_min_right_minus=122	max_min_right_plus=115	max_pos_hash_score=490	max_right=241	max_right_minus=235	max_right_plus=241	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.47	new_junction_read_count=57	polymorphism_frequency=NA	pos_hash_score=56	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=56
JC	482	.	NC_000913	381260	1	NC_000913	1105376	1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__381260__1__NC_000913__1105375__1__1____251__251__1__0	max_left=238	max_left_minus=238	max_left_plus=196	max_min_left=116	max_min_left_minus=116	max_min_left_plus=116	max_min_right=91	max_min_right_minus=82	max_min_right_plus=91	max_pos_hash_score=488	max_right=228	max_right_minus=213	max_right_plus=228	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.49	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=18
JC	483	.	NC_000913	381368	1	NC_000913	381615	1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=240	key=NC_000913__381368__1__NC_000913__381611__1__4____251__251__1__1	max_left=74	max_left_minus=74	max_left_plus=69	max_min_left=74	max_min_left_minus=74	max_min_left_plus=69	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=482	max_right=246	max_right_minus=173	max_right_plus=246	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=4	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	484	.	NC_000913	382179	1	NC_000913	382590	-1	0	alignment_overlap=2	coverage_minus=14	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=242	key=NC_000913__382177__1__NC_000913__382590__-1__2____251__251__1__1	max_left=232	max_left_minus=232	max_left_plus=230	max_min_left=123	max_min_left_minus=123	max_min_left_plus=59	max_min_right=102	max_min_right_minus=102	max_min_right_plus=98	max_pos_hash_score=486	max_right=239	max_right_minus=239	max_right_plus=235	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.65	new_junction_read_count=25	polymorphism_frequency=NA	pos_hash_score=25	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=25
JC	485	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.805e-01	junction_possible_overlap_registers=242	key=NC_000913__566774__-1__NC_000913__568034__1__2____251__251__0__0	max_left=220	max_left_minus=220	max_left_plus=218	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=97	max_min_right_minus=97	max_min_right_plus=36	max_pos_hash_score=486	max_right=97	max_right_minus=97	max_right_plus=36	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.34	new_junction_read_count=13	polymorphism_frequency=2.805e-01	pos_hash_score=7	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=2	side_1_possible_overlap_registers=244	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=7
JC	486	.	NC_000913	568449	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__568449__1__NC_000913__1469240__-1__0____251__251__0__1	max_left=244	max_left_minus=244	max_left_plus=230	max_min_left=123	max_min_left_minus=110	max_min_left_plus=123	max_min_right=120	max_min_right_minus=120	max_min_right_plus=105	max_pos_hash_score=490	max_right=246	max_right_minus=246	max_right_plus=245	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.77	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=29
JC	487	.	NC_000913	568453	-1	NC_000913	1467910	1	0	alignment_overlap=1	coverage_minus=17	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__568454__-1__NC_000913__1467910__1__1____251__251__0__1	max_left=249	max_left_minus=231	max_left_plus=249	max_min_left=121	max_min_left_minus=121	max_min_left_plus=100	max_min_right=121	max_min_right_minus=121	max_min_right_plus=97	max_pos_hash_score=488	max_right=244	max_right_minus=228	max_right_plus=244	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=38	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=37
JC	488	.	NC_000913	1105380	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1105380__-1__NC_000913__1467910__1__0____251__251__0__1	max_left=219	max_left_minus=219	max_left_plus=197	max_min_left=102	max_min_left_minus=102	max_min_left_plus=78	max_min_right=124	max_min_right_minus=115	max_min_right_plus=124	max_pos_hash_score=490	max_right=235	max_right_minus=177	max_right_plus=235	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.59	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=22
JC	489	.	NC_000913	1294034	-1	NC_000913	1294176	1	0	alignment_overlap=10	coverage_minus=12	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__1294034__-1__NC_000913__1294166__1__10____251__251__0__0	max_left=237	max_left_minus=217	max_left_plus=237	max_min_left=117	max_min_left_minus=103	max_min_left_plus=117	max_min_right=109	max_min_right_minus=103	max_min_right_plus=109	max_pos_hash_score=470	max_right=236	max_right_minus=233	max_right_plus=236	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.51	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	490	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=9	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=240	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=232	max_left_minus=232	max_left_plus=223	max_min_left=120	max_min_left_minus=120	max_min_left_plus=90	max_min_right=67	max_min_right_minus=67	max_min_right_plus=67	max_pos_hash_score=482	max_right=245	max_right_minus=208	max_right_plus=245	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.50	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	491	.	NC_000913	1303072	-1	NC_000913	1303085	1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1303072__-1__NC_000913__1303084__1__1____251__251__0__0	max_left=245	max_left_minus=219	max_left_plus=245	max_min_left=113	max_min_left_minus=113	max_min_left_plus=90	max_min_right=98	max_min_right_minus=51	max_min_right_plus=98	max_pos_hash_score=488	max_right=227	max_right_minus=227	max_right_plus=196	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.54	new_junction_read_count=21	polymorphism_frequency=9.132e-01	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=1	side_1_possible_overlap_registers=244	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=21
JC	492	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____251__251__1__0	max_left=242	max_left_minus=242	max_left_plus=205	max_min_left=122	max_min_left_minus=122	max_min_left_plus=114	max_min_right=123	max_min_right_minus=104	max_min_right_plus=123	max_pos_hash_score=490	max_right=233	max_right_minus=233	max_right_plus=225	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42
JC	493	.	NC_000913	1469240	-1	NC_000913	1792772	1	0	alignment_overlap=2	coverage_minus=13	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1469240__-1__NC_000913__1792770__1__2____251__251__1__0	max_left=236	max_left_minus=226	max_left_plus=236	max_min_left=117	max_min_left_minus=117	max_min_left_plus=117	max_min_right=107	max_min_right_minus=107	max_min_right_plus=100	max_pos_hash_score=486	max_right=236	max_right_minus=236	max_right_plus=236	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.02	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=39
JC	494	.	NC_000913	1651548	-1	NC_000913	1792776	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1651548__-1__NC_000913__1792776__-1__0____251__251__1__0	max_left=232	max_left_minus=222	max_left_plus=232	max_min_left=122	max_min_left_minus=122	max_min_left_plus=109	max_min_right=120	max_min_right_minus=109	max_min_right_plus=120	max_pos_hash_score=490	max_right=226	max_right_minus=226	max_right_plus=213	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.80	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30
JC	495	.	NC_000913	1907623	-1	NC_000913	1979270	-1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1907623__-1__NC_000913__1979270__-1__0____251__251__0__1	max_left=244	max_left_minus=242	max_left_plus=244	max_min_left=124	max_min_left_minus=124	max_min_left_plus=118	max_min_right=122	max_min_right_minus=121	max_min_right_plus=122	max_pos_hash_score=490	max_right=249	max_right_minus=249	max_right_plus=241	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.98	new_junction_read_count=38	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=235	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=38
JC	496	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=18	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____251__251__1__0	max_left=226	max_left_minus=206	max_left_plus=226	max_min_left=115	max_min_left_minus=115	max_min_left_plus=111	max_min_right=122	max_min_right_minus=106	max_min_right_plus=122	max_pos_hash_score=488	max_right=249	max_right_minus=249	max_right_plus=237	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=42	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	497	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____251__251__1__0	max_left=243	max_left_minus=243	max_left_plus=232	max_min_left=124	max_min_left_minus=123	max_min_left_plus=124	max_min_right=95	max_min_right_minus=79	max_min_right_plus=95	max_pos_hash_score=490	max_right=235	max_right_minus=220	max_right_plus=235	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.88	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33
JC	498	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____251__251__0__1	max_left=244	max_left_minus=231	max_left_plus=244	max_min_left=115	max_min_left_minus=85	max_min_left_plus=115	max_min_right=104	max_min_right_minus=97	max_min_right_plus=104	max_pos_hash_score=490	max_right=230	max_right_minus=230	max_right_plus=135	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.41	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=15
JC	499	.	NC_000913	2068941	1	NC_000913	2319850	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2068941__1__NC_000913__2319850__1__0____251__251__1__0	max_left=246	max_left_minus=220	max_left_plus=246	max_min_left=108	max_min_left_minus=78	max_min_left_plus=108	max_min_right=122	max_min_right_minus=122	max_min_right_plus=122	max_pos_hash_score=490	max_right=250	max_right_minus=247	max_right_plus=250	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=45	polymorphism_frequency=9.778e-01	pos_hash_score=42	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=45
JC	500	.	NC_000913	2269876	1	NC_000913	2288919	1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__2269875__1__NC_000913__2288919__1__1____251__251__0__1	max_left=246	max_left_minus=241	max_left_plus=246	max_min_left=123	max_min_left_minus=90	max_min_left_plus=123	max_min_right=125	max_min_right_minus=75	max_min_right_plus=125	max_pos_hash_score=488	max_right=247	max_right_minus=247	max_right_plus=215	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.86	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=32
JC	501	.	NC_000913	2269879	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2269879__-1__NC_000913__2290113__-1__0____251__251__0__1	max_left=245	max_left_minus=245	max_left_plus=242	max_min_left=106	max_min_left_minus=106	max_min_left_plus=64	max_min_right=124	max_min_right_minus=123	max_min_right_plus=124	max_pos_hash_score=490	max_right=245	max_right_minus=240	max_right_plus=245	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.57	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=21
JC	502	.	NC_000913	2288919	1	NC_000913	4536236	1	0	alignment_overlap=1	coverage_minus=9	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__2288919__1__NC_000913__4536235__1__1____251__251__1__0	max_left=243	max_left_minus=198	max_left_plus=243	max_min_left=124	max_min_left_minus=81	max_min_left_plus=124	max_min_right=121	max_min_right_minus=121	max_min_right_plus=102	max_pos_hash_score=488	max_right=245	max_right_minus=242	max_right_plus=245	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.60	new_junction_read_count=23	polymorphism_frequency=9.577e-01	pos_hash_score=23	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=23
JC	503	.	NC_000913	2290113	-1	NC_000913	4536239	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2290113__-1__NC_000913__4536239__-1__0____251__251__1__0	max_left=231	max_left_minus=231	max_left_plus=205	max_min_left=89	max_min_left_minus=89	max_min_left_plus=45	max_min_right=120	max_min_right_minus=120	max_min_right_plus=44	max_pos_hash_score=490	max_right=232	max_right_minus=232	max_right_plus=204	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.36	new_junction_read_count=14	polymorphism_frequency=9.323e-01	pos_hash_score=13	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=13
JC	504	.	NC_000913	2319854	-1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2319854__-1__NC_000913__2997691__-1__0____251__251__0__1	max_left=241	max_left_minus=241	max_left_plus=235	max_min_left=125	max_min_left_minus=124	max_min_left_plus=125	max_min_right=119	max_min_right_minus=119	max_min_right_plus=119	max_pos_hash_score=490	max_right=227	max_right_minus=200	max_right_plus=227	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.85	new_junction_read_count=33	polymorphism_frequency=9.700e-01	pos_hash_score=30	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=31
JC	505	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=23	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=233	max_left_minus=227	max_left_plus=233	max_min_left=102	max_min_left_minus=95	max_min_left_plus=102	max_min_right=117	max_min_right_minus=117	max_min_right_plus=111	max_pos_hash_score=474	max_right=236	max_right_minus=236	max_right_plus=224	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.15	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	506	.	NC_000913	3113622	1	NC_000913	3584195	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.895e-02	junction_possible_overlap_registers=244	key=NC_000913__3113622__1__NC_000913__3584195__-1__0____251__251__0__1	max_left=159	max_left_minus=134	max_left_plus=159	max_min_left=86	max_min_left_minus=0	max_min_left_plus=86	max_min_right=117	max_min_right_minus=117	max_min_right_plus=91	max_pos_hash_score=490	max_right=165	max_right_minus=117	max_right_plus=165	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.895e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	507	.	NC_000913	3187426	-1	NC_000913	3737137	1	0	alignment_overlap=1	coverage_minus=13	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__3187426__-1__NC_000913__3737136__1__1____251__251__1__0	max_left=245	max_left_minus=245	max_left_plus=245	max_min_left=118	max_min_left_minus=68	max_min_left_plus=118	max_min_right=116	max_min_right_minus=116	max_min_right_plus=113	max_pos_hash_score=488	max_right=242	max_right_minus=242	max_right_plus=238	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.01	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=36
JC	508	.	NC_000913	3309172	-1	NC_000913	3309188	1	0	alignment_overlap=0	coverage_minus=25	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=7.769e-01	junction_possible_overlap_registers=244	key=NC_000913__3309172__-1__NC_000913__3309188__1__0____251__251__0__0	max_left=250	max_left_minus=250	max_left_plus=245	max_min_left=111	max_min_left_minus=96	max_min_left_plus=111	max_min_right=125	max_min_right_minus=125	max_min_right_plus=123	max_pos_hash_score=490	max_right=245	max_right_minus=245	max_right_plus=205	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=47	polymorphism_frequency=7.769e-01	pos_hash_score=44	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.36	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=13	side_2_redundant=0	total_non_overlap_reads=46
JC	509	.	NC_000913	3682260	-1	NC_000913	3682295	1	0	alignment_overlap=2	coverage_minus=20	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3682260__-1__NC_000913__3682293__1__2____251__251__0__0	max_left=230	max_left_minus=229	max_left_plus=230	max_min_left=112	max_min_left_minus=112	max_min_left_plus=75	max_min_right=122	max_min_right_minus=116	max_min_right_plus=122	max_pos_hash_score=486	max_right=246	max_right_minus=233	max_right_plus=246	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40
JC	510	.	NC_000913	3737141	-1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3737141__-1__NC_000913__4498181__1__0____251__251__0__1	max_left=246	max_left_minus=218	max_left_plus=246	max_min_left=123	max_min_left_minus=123	max_min_left_plus=115	max_min_right=121	max_min_right_minus=121	max_min_right_plus=112	max_pos_hash_score=490	max_right=246	max_right_minus=234	max_right_plus=246	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.96	new_junction_read_count=37	polymorphism_frequency=9.731e-01	pos_hash_score=35	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=36
JC	511	.	NC_000913	4123923	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=21	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__4123922__1__NC_000913__4498181__1__1____251__251__0__1	max_left=248	max_left_minus=241	max_left_plus=248	max_min_left=114	max_min_left_minus=114	max_min_left_plus=114	max_min_right=120	max_min_right_minus=120	max_min_right_plus=97	max_pos_hash_score=488	max_right=235	max_right_minus=215	max_right_plus=235	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=41	polymorphism_frequency=9.757e-01	pos_hash_score=38	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=40
JC	512	.	NC_000913	4123927	-1	NC_000913	4499511	-1	0	alignment_overlap=1	coverage_minus=17	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____251__251__0__1	max_left=247	max_left_minus=247	max_left_plus=235	max_min_left=117	max_min_left_minus=117	max_min_left_plus=115	max_min_right=115	max_min_right_minus=100	max_min_right_plus=115	max_pos_hash_score=488	max_right=239	max_right_minus=233	max_right_plus=239	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=37	polymorphism_frequency=9.477e-01	pos_hash_score=33	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=36
JC	513	.	NC_000913	4135180	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__4135180__1__NC_000913__4498181__1__0____251__251__0__1	max_left=248	max_left_minus=240	max_left_plus=248	max_min_left=113	max_min_left_minus=84	max_min_left_plus=113	max_min_right=121	max_min_right_minus=121	max_min_right_plus=108	max_pos_hash_score=490	max_right=238	max_right_minus=238	max_right_plus=235	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=38
JC	514	.	NC_000913	4135184	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__4135184__-1__NC_000913__4499511__-1__0____251__251__0__1	max_left=245	max_left_minus=244	max_left_plus=245	max_min_left=122	max_min_left_minus=50	max_min_left_plus=122	max_min_right=93	max_min_right_minus=93	max_min_right_plus=78	max_pos_hash_score=490	max_right=235	max_right_minus=235	max_right_plus=234	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=41
UN	515	.	NC_000913	15527	15527
UN	516	.	NC_000913	15534	15534
UN	517	.	NC_000913	15540	15540
UN	518	.	NC_000913	15542	15542
UN	519	.	NC_000913	15545	15546
UN	520	.	NC_000913	15548	15554
UN	521	.	NC_000913	15556	15557
UN	522	.	NC_000913	15559	15564
UN	523	.	NC_000913	15566	16541
UN	524	.	NC_000913	16543	16543
UN	525	.	NC_000913	16545	16545
UN	526	.	NC_000913	19980	19981
UN	527	.	NC_000913	19983	19983
UN	528	.	NC_000913	19985	20347
UN	529	.	NC_000913	20350	20350
UN	530	.	NC_000913	223886	223886
UN	531	.	NC_000913	223893	224546
UN	532	.	NC_000913	224548	224549
UN	533	.	NC_000913	224559	224559
UN	534	.	NC_000913	224564	224564
UN	535	.	NC_000913	225068	225068
UN	536	.	NC_000913	225070	225070
UN	537	.	NC_000913	225074	225391
UN	538	.	NC_000913	227211	228452
UN	539	.	NC_000913	257908	258683
UN	540	.	NC_000913	270699	270699
UN	541	.	NC_000913	270701	270701
UN	542	.	NC_000913	270703	270705
UN	543	.	NC_000913	270708	270709
UN	544	.	NC_000913	270711	270711
UN	545	.	NC_000913	270715	270717
UN	546	.	NC_000913	270723	270723
UN	547	.	NC_000913	270725	270727
UN	548	.	NC_000913	270730	270730
UN	549	.	NC_000913	270732	270732
UN	550	.	NC_000913	270736	270736
UN	551	.	NC_000913	270739	270741
UN	552	.	NC_000913	270743	270743
UN	553	.	NC_000913	270745	270746
UN	554	.	NC_000913	270748	270748
UN	555	.	NC_000913	270750	270751
UN	556	.	NC_000913	270753	271123
UN	557	.	NC_000913	271134	271134
UN	558	.	NC_000913	274180	274927
UN	559	.	NC_000913	279374	279374
UN	560	.	NC_000913	279382	279727
UN	561	.	NC_000913	279729	279738
UN	562	.	NC_000913	279742	279742
UN	563	.	NC_000913	290843	290843
UN	564	.	NC_000913	290847	290847
UN	565	.	NC_000913	290859	291187
UN	566	.	NC_000913	315447	315447
UN	567	.	NC_000913	315451	315454
UN	568	.	NC_000913	315456	316261
UN	569	.	NC_000913	357855	357855
UN	570	.	NC_000913	357858	357860
UN	571	.	NC_000913	357868	357868
UN	572	.	NC_000913	357873	357875
UN	573	.	NC_000913	357881	357881
UN	574	.	NC_000913	357883	357884
UN	575	.	NC_000913	357886	357887
UN	576	.	NC_000913	357890	357890
UN	577	.	NC_000913	357909	357911
UN	578	.	NC_000913	357914	357914
UN	579	.	NC_000913	381473	381473
UN	580	.	NC_000913	381475	382399
UN	581	.	NC_000913	382401	382402
UN	582	.	NC_000913	391881	391881
UN	583	.	NC_000913	391885	391885
UN	584	.	NC_000913	391889	391889
UN	585	.	NC_000913	391896	391896
UN	586	.	NC_000913	391900	391901
UN	587	.	NC_000913	391904	391906
UN	588	.	NC_000913	391908	391909
UN	589	.	NC_000913	391911	392755
UN	590	.	NC_000913	526081	526081
UN	591	.	NC_000913	526083	526488
UN	592	.	NC_000913	566947	566948
UN	593	.	NC_000913	566960	566960
UN	594	.	NC_000913	566962	567835
UN	595	.	NC_000913	567837	567839
UN	596	.	NC_000913	567843	567843
UN	597	.	NC_000913	574816	575600
UN	598	.	NC_000913	575605	575605
UN	599	.	NC_000913	578427	578427
UN	600	.	NC_000913	578729	578729
UN	601	.	NC_000913	578809	578809
UN	602	.	NC_000913	579099	579099
UN	603	.	NC_000913	579127	579127
UN	604	.	NC_000913	579134	579134
UN	605	.	NC_000913	579146	579146
UN	606	.	NC_000913	579271	579271
UN	607	.	NC_000913	579540	579540
UN	608	.	NC_000913	579671	579671
UN	609	.	NC_000913	580020	580020
UN	610	.	NC_000913	596494	596494
UN	611	.	NC_000913	596496	596496
UN	612	.	NC_000913	596499	596499
UN	613	.	NC_000913	596507	596507
UN	614	.	NC_000913	608204	608207
UN	615	.	NC_000913	608209	608209
UN	616	.	NC_000913	608211	608212
UN	617	.	NC_000913	608219	609145
UN	618	.	NC_000913	609147	609147
UN	619	.	NC_000913	618036	618036
UN	620	.	NC_000913	618064	618064
UN	621	.	NC_000913	618072	618079
UN	622	.	NC_000913	618082	618088
UN	623	.	NC_000913	686037	686037
UN	624	.	NC_000913	686064	686064
UN	625	.	NC_000913	687993	688842
UN	626	.	NC_000913	688850	688850
UN	627	.	NC_000913	752862	752866
UN	628	.	NC_000913	752870	752870
UN	629	.	NC_000913	752873	752873
UN	630	.	NC_000913	752875	752875
UN	631	.	NC_000913	752878	752879
UN	632	.	NC_000913	752894	752897
UN	633	.	NC_000913	753047	753047
UN	634	.	NC_000913	753114	753114
UN	635	.	NC_000913	766691	766691
UN	636	.	NC_000913	770897	770899
UN	637	.	NC_000913	770902	770904
UN	638	.	NC_000913	770906	770907
UN	639	.	NC_000913	770909	770909
UN	640	.	NC_000913	770912	770917
UN	641	.	NC_000913	770920	770920
UN	642	.	NC_000913	770924	770924
UN	643	.	NC_000913	770929	770933
UN	644	.	NC_000913	770935	770936
UN	645	.	NC_000913	770949	770949
UN	646	.	NC_000913	770951	770951
UN	647	.	NC_000913	770960	770960
UN	648	.	NC_000913	770973	770974
UN	649	.	NC_000913	770986	770986
UN	650	.	NC_000913	807325	807328
UN	651	.	NC_000913	820570	820571
UN	652	.	NC_000913	820573	820580
UN	653	.	NC_000913	820582	820601
UN	654	.	NC_000913	820604	820607
UN	655	.	NC_000913	820612	820681
UN	656	.	NC_000913	987484	987484
UN	657	.	NC_000913	987486	987486
UN	658	.	NC_000913	987488	987488
UN	659	.	NC_000913	987490	987494
UN	660	.	NC_000913	987496	987496
UN	661	.	NC_000913	987498	987580
UN	662	.	NC_000913	987586	987586
UN	663	.	NC_000913	987592	987592
UN	664	.	NC_000913	987608	987608
UN	665	.	NC_000913	987618	987619
UN	666	.	NC_000913	987624	987624
UN	667	.	NC_000913	987628	987628
UN	668	.	NC_000913	987637	987637
UN	669	.	NC_000913	1094461	1095307
UN	670	.	NC_000913	1095311	1095311
UN	671	.	NC_000913	1095313	1095313
UN	672	.	NC_000913	1095315	1095315
UN	673	.	NC_000913	1095318	1095318
UN	674	.	NC_000913	1095331	1095331
UN	675	.	NC_000913	1196344	1196344
UN	676	.	NC_000913	1196347	1196348
UN	677	.	NC_000913	1196350	1196351
UN	678	.	NC_000913	1196353	1196353
UN	679	.	NC_000913	1196355	1211436
UN	680	.	NC_000913	1211440	1211440
UN	681	.	NC_000913	1271894	1271894
UN	682	.	NC_000913	1294035	1294175
UN	683	.	NC_000913	1299499	1300697
UN	684	.	NC_000913	1303073	1303084
UN	685	.	NC_000913	1311163	1311215
UN	686	.	NC_000913	1311217	1311249
UN	687	.	NC_000913	1311251	1311258
UN	688	.	NC_000913	1311263	1311263
UN	689	.	NC_000913	1311268	1311268
UN	690	.	NC_000913	1311275	1311275
UN	691	.	NC_000913	1311277	1311277
UN	692	.	NC_000913	1311279	1311280
UN	693	.	NC_000913	1396186	1397023
UN	694	.	NC_000913	1429160	1429160
UN	695	.	NC_000913	1429164	1429164
UN	696	.	NC_000913	1429171	1429171
UN	697	.	NC_000913	1429204	1429204
UN	698	.	NC_000913	1429207	1429207
UN	699	.	NC_000913	1429231	1429231
UN	700	.	NC_000913	1429235	1429236
UN	701	.	NC_000913	1429240	1429240
UN	702	.	NC_000913	1429246	1429246
UN	703	.	NC_000913	1429249	1429249
UN	704	.	NC_000913	1429252	1429252
UN	705	.	NC_000913	1429255	1429255
UN	706	.	NC_000913	1429258	1429258
UN	707	.	NC_000913	1429261	1429261
UN	708	.	NC_000913	1429273	1429273
UN	709	.	NC_000913	1429291	1429291
UN	710	.	NC_000913	1429702	1429702
UN	711	.	NC_000913	1429708	1429708
UN	712	.	NC_000913	1429724	1429724
UN	713	.	NC_000913	1429732	1429732
UN	714	.	NC_000913	1429735	1429735
UN	715	.	NC_000913	1429753	1429753
UN	716	.	NC_000913	1429759	1429759
UN	717	.	NC_000913	1429780	1429780
UN	718	.	NC_000913	1432806	1433034
UN	719	.	NC_000913	1433041	1433041
UN	720	.	NC_000913	1433044	1433044
UN	721	.	NC_000913	1433764	1433833
UN	722	.	NC_000913	1433835	1433839
UN	723	.	NC_000913	1441039	1441039
UN	724	.	NC_000913	1441059	1441059
UN	725	.	NC_000913	1468072	1469032
UN	726	.	NC_000913	1469476	1469476
UN	727	.	NC_000913	1469479	1469479
UN	728	.	NC_000913	1469482	1470331
UN	729	.	NC_000913	1470335	1470336
UN	730	.	NC_000913	1528539	1528540
UN	731	.	NC_000913	1528542	1528963
UN	732	.	NC_000913	1528965	1528965
UN	733	.	NC_000913	1528968	1528968
UN	734	.	NC_000913	1530178	1530178
UN	735	.	NC_000913	1530187	1530190
UN	736	.	NC_000913	1530194	1530195
UN	737	.	NC_000913	1530198	1530200
UN	738	.	NC_000913	1530202	1530204
UN	739	.	NC_000913	1530206	1530209
UN	740	.	NC_000913	1530222	1530222
UN	741	.	NC_000913	1530229	1530229
UN	742	.	NC_000913	1530241	1530241
UN	743	.	NC_000913	1530266	1530273
UN	744	.	NC_000913	1530275	1530275
UN	745	.	NC_000913	1571075	1571133
UN	746	.	NC_000913	1571661	1571661
UN	747	.	NC_000913	1633451	1633451
UN	748	.	NC_000913	1633453	1633453
UN	749	.	NC_000913	1634278	1634427
UN	750	.	NC_000913	1634482	1634482
UN	751	.	NC_000913	1634484	1634484
UN	752	.	NC_000913	1634724	1634724
UN	753	.	NC_000913	1635974	1635974
UN	754	.	NC_000913	1636068	1636068
UN	755	.	NC_000913	1636074	1636074
UN	756	.	NC_000913	1640511	1640511
UN	757	.	NC_000913	1640514	1640514
UN	758	.	NC_000913	1640523	1640523
UN	759	.	NC_000913	1640962	1640964
UN	760	.	NC_000913	1640973	1641028
UN	761	.	NC_000913	1641030	1641030
UN	762	.	NC_000913	1641032	1641033
UN	763	.	NC_000913	1641036	1641041
UN	764	.	NC_000913	1641045	1641045
UN	765	.	NC_000913	1651028	1651028
UN	766	.	NC_000913	1651034	1651034
UN	767	.	NC_000913	1651036	1651325
UN	768	.	NC_000913	1651333	1651333
UN	769	.	NC_000913	1651335	1651335
UN	770	.	NC_000913	1739665	1739665
UN	771	.	NC_000913	1842914	1842915
UN	772	.	NC_000913	1842919	1842919
UN	773	.	NC_000913	1858723	1858723
UN	774	.	NC_000913	1877680	1877680
UN	775	.	NC_000913	1877686	1877686
UN	776	.	NC_000913	1877696	1877696
UN	777	.	NC_000913	1978495	1979270
UN	778	.	NC_000913	2058211	2058216
UN	779	.	NC_000913	2058220	2058222
UN	780	.	NC_000913	2058227	2058227
UN	781	.	NC_000913	2058231	2058232
UN	782	.	NC_000913	2058252	2058252
UN	783	.	NC_000913	2058255	2058256
UN	784	.	NC_000913	2066955	2066955
UN	785	.	NC_000913	2066957	2066957
UN	786	.	NC_000913	2066959	2066959
UN	787	.	NC_000913	2066961	2067120
UN	788	.	NC_000913	2069133	2070105
UN	789	.	NC_000913	2070108	2070108
UN	790	.	NC_000913	2101980	2102778
UN	791	.	NC_000913	2102781	2102782
UN	792	.	NC_000913	2102785	2102785
UN	793	.	NC_000913	2102788	2102790
UN	794	.	NC_000913	2102794	2102795
UN	795	.	NC_000913	2102797	2102798
UN	796	.	NC_000913	2102802	2102802
UN	797	.	NC_000913	2102808	2102809
UN	798	.	NC_000913	2102823	2102823
UN	799	.	NC_000913	2102839	2102839
UN	800	.	NC_000913	2102843	2102843
UN	801	.	NC_000913	2151547	2151547
UN	802	.	NC_000913	2151620	2151620
UN	803	.	NC_000913	2151676	2151676
UN	804	.	NC_000913	2151679	2151679
UN	805	.	NC_000913	2151681	2151683
UN	806	.	NC_000913	2151685	2151687
UN	807	.	NC_000913	2151689	2151689
UN	808	.	NC_000913	2151691	2151691
UN	809	.	NC_000913	2151694	2151695
UN	810	.	NC_000913	2151697	2151697
UN	811	.	NC_000913	2151699	2151699
UN	812	.	NC_000913	2151702	2151702
UN	813	.	NC_000913	2151728	2151728
UN	814	.	NC_000913	2170351	2171205
UN	815	.	NC_000913	2191175	2191175
UN	816	.	NC_000913	2191237	2191237
UN	817	.	NC_000913	2191245	2191245
UN	818	.	NC_000913	2191250	2191250
UN	819	.	NC_000913	2191270	2191270
UN	820	.	NC_000913	2191272	2191272
UN	821	.	NC_000913	2229176	2229176
UN	822	.	NC_000913	2229178	2229178
UN	823	.	NC_000913	2229192	2229192
UN	824	.	NC_000913	2229196	2229196
UN	825	.	NC_000913	2229198	2229198
UN	826	.	NC_000913	2229205	2229205
UN	827	.	NC_000913	2229207	2229210
UN	828	.	NC_000913	2229213	2229213
UN	829	.	NC_000913	2229215	2229216
UN	830	.	NC_000913	2229218	2229219
UN	831	.	NC_000913	2229221	2229222
UN	832	.	NC_000913	2229224	2229224
UN	833	.	NC_000913	2229231	2229231
UN	834	.	NC_000913	2229236	2229236
UN	835	.	NC_000913	2289071	2289071
UN	836	.	NC_000913	2289073	2289073
UN	837	.	NC_000913	2289075	2289075
UN	838	.	NC_000913	2289085	2289085
UN	839	.	NC_000913	2289089	2289890
UN	840	.	NC_000913	2289898	2289899
UN	841	.	NC_000913	2289906	2289906
UN	842	.	NC_000913	2367367	2367367
UN	843	.	NC_000913	2514481	2515403
UN	844	.	NC_000913	2515407	2515407
UN	845	.	NC_000913	2515409	2515413
UN	846	.	NC_000913	2515417	2515419
UN	847	.	NC_000913	2515423	2515423
UN	848	.	NC_000913	2515426	2515427
UN	849	.	NC_000913	2558699	2565488
UN	850	.	NC_000913	2726281	2729074
UN	851	.	NC_000913	2729076	2729079
UN	852	.	NC_000913	2729081	2729081
UN	853	.	NC_000913	2729753	2730754
UN	854	.	NC_000913	2903737	2903737
UN	855	.	NC_000913	2903745	2903745
UN	856	.	NC_000913	2906563	2906563
UN	857	.	NC_000913	2996571	2996571
UN	858	.	NC_000913	2996573	2996574
UN	859	.	NC_000913	2996586	2997506
UN	860	.	NC_000913	2997513	2997517
UN	861	.	NC_000913	3130360	3131123
UN	862	.	NC_000913	3186299	3187215
UN	863	.	NC_000913	3187217	3187217
UN	864	.	NC_000913	3206440	3206440
UN	865	.	NC_000913	3239628	3239628
UN	866	.	NC_000913	3365769	3366537
UN	867	.	NC_000913	3366539	3366541
UN	868	.	NC_000913	3366543	3366545
UN	869	.	NC_000913	3366552	3366552
UN	870	.	NC_000913	3366555	3366555
UN	871	.	NC_000913	3366558	3366558
UN	872	.	NC_000913	3423876	3423878
UN	873	.	NC_000913	3423880	3423881
UN	874	.	NC_000913	3423886	3424446
UN	875	.	NC_000913	3424860	3424860
UN	876	.	NC_000913	3424862	3426642
UN	877	.	NC_000913	3426644	3426644
UN	878	.	NC_000913	3426646	3426647
UN	879	.	NC_000913	3426649	3426650
UN	880	.	NC_000913	3426652	3426654
UN	881	.	NC_000913	3426656	3426658
UN	882	.	NC_000913	3427011	3427016
UN	883	.	NC_000913	3427022	3427023
UN	884	.	NC_000913	3427025	3427025
UN	885	.	NC_000913	3427027	3427027
UN	886	.	NC_000913	3427029	3428345
UN	887	.	NC_000913	3470369	3470370
UN	888	.	NC_000913	3470376	3470528
UN	889	.	NC_000913	3470530	3470534
UN	890	.	NC_000913	3470536	3470536
UN	891	.	NC_000913	3583655	3583655
UN	892	.	NC_000913	3583660	3583661
UN	893	.	NC_000913	3583663	3583972
UN	894	.	NC_000913	3583984	3583984
UN	895	.	NC_000913	3619474	3619474
UN	896	.	NC_000913	3619484	3619484
UN	897	.	NC_000913	3619486	3619486
UN	898	.	NC_000913	3619490	3620857
UN	899	.	NC_000913	3621308	3622081
UN	900	.	NC_000913	3622083	3622083
UN	901	.	NC_000913	3652252	3653010
UN	902	.	NC_000913	3666601	3666663
UN	903	.	NC_000913	3666665	3666665
UN	904	.	NC_000913	3666667	3666667
UN	905	.	NC_000913	3666669	3666671
UN	906	.	NC_000913	3682261	3682294
UN	907	.	NC_000913	3762448	3762448
UN	908	.	NC_000913	3762455	3762455
UN	909	.	NC_000913	3762457	3762457
UN	910	.	NC_000913	3762461	3762461
UN	911	.	NC_000913	3762463	3762463
UN	912	.	NC_000913	3762466	3762466
UN	913	.	NC_000913	3762473	3762473
UN	914	.	NC_000913	3762482	3763870
UN	915	.	NC_000913	3763872	3763872
UN	916	.	NC_000913	3764291	3765071
UN	917	.	NC_000913	3765073	3765073
UN	918	.	NC_000913	3765076	3765076
UN	919	.	NC_000913	3792895	3792895
UN	920	.	NC_000913	3862661	3862661
UN	921	.	NC_000913	3942242	3942242
UN	922	.	NC_000913	3942244	3942250
UN	923	.	NC_000913	3942252	3943191
UN	924	.	NC_000913	3943762	3943762
UN	925	.	NC_000913	3943828	3943830
UN	926	.	NC_000913	3943832	3943833
UN	927	.	NC_000913	3943836	3943836
UN	928	.	NC_000913	3944259	3944259
UN	929	.	NC_000913	3944269	3944272
UN	930	.	NC_000913	3944274	3945347
UN	931	.	NC_000913	3945349	3945349
UN	932	.	NC_000913	3945355	3945355
UN	933	.	NC_000913	4035322	4035323
UN	934	.	NC_000913	4035325	4035325
UN	935	.	NC_000913	4035330	4035522
UN	936	.	NC_000913	4035524	4035524
UN	937	.	NC_000913	4035942	4035942
UN	938	.	NC_000913	4035948	4036901
UN	939	.	NC_000913	4036903	4036904
UN	940	.	NC_000913	4036907	4036917
UN	941	.	NC_000913	4037575	4037575
UN	942	.	NC_000913	4037578	4037629
UN	943	.	NC_000913	4037641	4037641
UN	944	.	NC_000913	4037971	4037971
UN	945	.	NC_000913	4037985	4038461
UN	946	.	NC_000913	4038933	4039184
UN	947	.	NC_000913	4039589	4039590
UN	948	.	NC_000913	4039594	4039596
UN	949	.	NC_000913	4039599	4039601
UN	950	.	NC_000913	4039603	4039607
UN	951	.	NC_000913	4039609	4039611
UN	952	.	NC_000913	4039613	4039613
UN	953	.	NC_000913	4039615	4040417
UN	954	.	NC_000913	4040422	4040422
UN	955	.	NC_000913	4040429	4040429
UN	956	.	NC_000913	4166482	4166482
UN	957	.	NC_000913	4166501	4168011
UN	958	.	NC_000913	4168788	4168789
UN	959	.	NC_000913	4168791	4171435
UN	960	.	NC_000913	4176775	4176890
UN	961	.	NC_000913	4176892	4176898
UN	962	.	NC_000913	4208330	4209530
UN	963	.	NC_000913	4209543	4209543
UN	964	.	NC_000913	4210212	4212950
UN	965	.	NC_000913	4212957	4212957
UN	966	.	NC_000913	4296268	4296268
UN	967	.	NC_000913	4498365	4498368
UN	968	.	NC_000913	4498370	4498370
UN	969	.	NC_000913	4498372	4499301
UN	970	.	NC_000913	4499305	4499305
UN	971	.	NC_000913	4507647	4508476
UN	972	.	NC_000913	4508479	4508479
UN	973	.	NC_000913	4508481	4508481
UN	974	.	NC_000913	4508483	4508484
UN	975	.	NC_000913	4508487	4508490
UN	976	.	NC_000913	4508495	4508495