#=GENOME_DIFF	1.0
#=CREATED	13:12:26 19 Dec 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20241218run12/IH197_S6_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20241218run12/IH197_S6_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20241218run12/IH197_S6_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20241218run12/IH197_S6_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20241218run12/IH197_S6_L001_R2_001.fastq.gz
#=CONVERTED-BASES	224270318
#=CONVERTED-READS	917672
#=INPUT-BASES	224272676
#=INPUT-READS	917732
#=MAPPED-BASES	206963543
#=MAPPED-READS	850098
MOB	1	680,681	NC_000913	57276	IS2	1	5
SNP	2	231	NC_000913	71134	A
DEL	3	670,682	NC_000913	257908	776
SNP	4	232	NC_000913	383203	G
SNP	5	233	NC_000913	434848	A
SNP	6	234	NC_000913	442290	A
SNP	7	235	NC_000913	446036	T
SNP	8	236	NC_000913	448621	A
SNP	9	237	NC_000913	452197	A
SNP	10	238	NC_000913	454918	A
SNP	11	239	NC_000913	460678	A
SNP	12	240	NC_000913	463581	A
SNP	13	241	NC_000913	464699	A
SNP	14	242	NC_000913	464872	A
SNP	15	243	NC_000913	469384	A
SNP	16	244	NC_000913	469435	A
SNP	17	245	NC_000913	474597	A
SNP	18	246	NC_000913	477894	A
SNP	19	247	NC_000913	481484	A
SNP	20	248	NC_000913	485018	A
SNP	21	249	NC_000913	488839	A
SNP	22	250	NC_000913	492872	A
SNP	23	251	NC_000913	495221	A
SNP	24	252	NC_000913	500604	A
SNP	25	253	NC_000913	501813	A
SNP	26	254	NC_000913	503911	A
SNP	27	255	NC_000913	518281	A
SNP	28	256	NC_000913	531251	T
SNP	29	257	NC_000913	536970	A
SNP	30	259	NC_000913	557635	T
MOB	31	691,692	NC_000913	568449	IS2	-1	5
SNP	32	344	NC_000913	615913	A
SNP	33	345	NC_000913	617063	A
SNP	34	346	NC_000913	618034	A
SNP	35	347	NC_000913	620518	A
SNP	36	348	NC_000913	628164	C
SNP	37	349	NC_000913	628713	A
SNP	38	350	NC_000913	631633	A
SNP	39	351	NC_000913	636492	A
SNP	40	352	NC_000913	640256	A
SNP	41	353	NC_000913	646502	A
SNP	42	354	NC_000913	650230	A
SNP	43	355	NC_000913	661069	A
SNP	44	356	NC_000913	663759	A
SNP	45	357	NC_000913	664542	A
SNP	46	358	NC_000913	664907	A
SNP	47	359	NC_000913	670395	A
SNP	48	360	NC_000913	675064	A
SNP	49	361	NC_000913	677674	A
SNP	50	362	NC_000913	690238	A
SNP	51	363	NC_000913	694176	A
SNP	52	364	NC_000913	702720	A
SNP	53	365	NC_000913	703258	A
SNP	54	366	NC_000913	705375	A
SNP	55	367	NC_000913	705414	A
SNP	56	368	NC_000913	711853	A
SNP	57	369	NC_000913	715516	A
SNP	58	370	NC_000913	740865	A
SNP	59	371	NC_000913	769601	A
SNP	60	372	NC_000913	770032	A
SNP	61	373	NC_000913	775011	A
SNP	62	374	NC_000913	776164	A
SNP	63	375	NC_000913	776311	A
SNP	64	376	NC_000913	808428	A
SNP	65	377	NC_000913	808808	A
SNP	66	378	NC_000913	811134	A
SNP	67	379	NC_000913	817484	A
SNP	68	380	NC_000913	821009	A
SNP	69	381	NC_000913	826038	A
SNP	70	382	NC_000913	832937	A
SNP	71	383	NC_000913	833336	A
SNP	72	384	NC_000913	834278	A
SNP	73	385	NC_000913	854523	A
SNP	74	386	NC_000913	856923	A
SNP	75	387	NC_000913	857458	A
SNP	76	388	NC_000913	858892	T
SNP	77	389	NC_000913	860260	A
SNP	78	390	NC_000913	865295	A
SNP	79	391	NC_000913	871607	A
SNP	80	392	NC_000913	884298	A
SNP	81	393	NC_000913	895123	A
SNP	82	394	NC_000913	896177	A
SNP	83	395	NC_000913	910295	T
SNP	84	396	NC_000913	911117	A
SNP	85	397	NC_000913	918891	A
SNP	86	398	NC_000913	924859	C
SNP	87	399	NC_000913	930390	A
SNP	88	400	NC_000913	935214	A
SNP	89	401	NC_000913	946875	A
SNP	90	402	NC_000913	957294	A
SNP	91	403	NC_000913	969254	A
SNP	92	404	NC_000913	975438	A
SNP	93	405	NC_000913	976458	A
SNP	94	406	NC_000913	981576	A
SNP	95	407	NC_000913	987152	T
SNP	96	408	NC_000913	988841	A
SNP	97	409	NC_000913	996646	C
SNP	98	410	NC_000913	1001272	A
SNP	99	411	NC_000913	1001463	A
SNP	100	412	NC_000913	1013246	A
SNP	101	413	NC_000913	1015156	A
SNP	102	414	NC_000913	1016983	A
SNP	103	415	NC_000913	1019827	C
SNP	104	416	NC_000913	1026673	A
SNP	105	417	NC_000913	1036834	A
SNP	106	418	NC_000913	1054126	A
SNP	107	419	NC_000913	1056263	A
SNP	108	420	NC_000913	1069858	A
SNP	109	421	NC_000913	1079999	A
SNP	110	422	NC_000913	1085802	A
SNP	111	423	NC_000913	1095879	A
SNP	112	424	NC_000913	1099700	A
SNP	113	425	NC_000913	1105328	A
MOB	114	688,693	NC_000913	1105376	IS2	-1	5
SNP	115	426	NC_000913	1111994	A
SNP	116	427	NC_000913	1119585	A
SNP	117	428	NC_000913	1120661	A
SNP	118	429	NC_000913	1122452	A
SNP	119	430	NC_000913	1124889	A
SNP	120	431	NC_000913	1126492	A
SNP	121	432	NC_000913	1151298	A
SNP	122	433	NC_000913	1169127	A
SNP	123	434	NC_000913	1175952	A
SNP	124	435	NC_000913	1193350	A
SNP	125	436	NC_000913	1196220	T
SNP	126	437	NC_000913	1196232	T
SNP	127	438	NC_000913	1196245	C
SNP	128	439	NC_000913	1196247	G
SNP	129	440	NC_000913	1196277	T
SNP	130	441	NC_000913	1196280	C
SNP	131	442	NC_000913	1196283	G
SNP	132	443	NC_000913	1196292	T
SNP	133	444	NC_000913	1196304	A
SNP	134	445	NC_000913	1196316	A
SNP	135	446	NC_000913	1196325	G
SNP	136	447	NC_000913	1212851	A
SNP	137	448	NC_000913	1214646	A
SNP	138	449	NC_000913	1223271	A
SNP	139	450	NC_000913	1253655	A
SNP	140	451	NC_000913	1290881	T
DEL	141	672,694	NC_000913	1294035	141
DEL	142	673,695	NC_000913	1299499	1199
DEL	143	674,696	NC_000913	1303073	12
SNP	144	452	NC_000913	1310045	A
SNP	145	453	NC_000913	1337394	G
SNP	146	454	NC_000913	1353758	A
SNP	147	455	NC_000913	1401887	T
SNP	148	456	NC_000913	1403108	T
SNP	149	457	NC_000913	1404682	T
SNP	150	458	NC_000913	1410605	T
DEL	151	575	NC_000913	1494388	1
SNP	152	576	NC_000913	1508106	A
SNP	153	577	NC_000913	1517508	T
SNP	154	578	NC_000913	1538387	T
SNP	155	579	NC_000913	1538412	T
SNP	156	580	NC_000913	1539710	T
SNP	157	605	NC_000913	1652331	C
DEL	158	606	NC_000913	1667887	1
SNP	159	607	NC_000913	1697484	T
DEL	160	608	NC_000913	1744751	1
SNP	161	609	NC_000913	1766994	A
MOB	162	698,700	NC_000913	1792772	IS2	-1	5
SNP	163	610	NC_000913	1792977	A
SNP	164	611	NC_000913	1795752	A
SNP	165	612	NC_000913	1834806	A
SNP	166	613	NC_000913	1837658	A
SNP	167	614	NC_000913	1846553	A
SNP	168	615	NC_000913	1962881	G
SNP	169	616	NC_000913	1978243	T
SNP	170	617	NC_000913	2003264	T
SNP	171	618	NC_000913	2032423	A
SNP	172	619	NC_000913	2038955	T
SNP	173	620	NC_000913	2112861	T
SNP	174	621	NC_000913	2129008	T
SNP	175	622	NC_000913	2146847	T
SNP	176	623	NC_000913	2152816	T
SNP	177	624	NC_000913	2154726	T
DEL	178	625,626	NC_000913	2173363	2
SNP	179	627	NC_000913	2181660	T
SNP	180	628	NC_000913	2187903	T
SNP	181	629	NC_000913	2188502	T
SNP	182	630	NC_000913	2194106	T
SNP	183	631	NC_000913	2204319	C
SNP	184	632	NC_000913	2242121	G
SNP	185	633	NC_000913	2251527	T
SNP	186	634	NC_000913	2258643	A
SNP	187	635	NC_000913	2264035	T
SNP	188	636	NC_000913	2267899	T
MOB	189	705,706	NC_000913	2269876	IS5	1	4
SNP	190	637	NC_000913	2275757	A
MOB	191	704,709	NC_000913	2319850	IS2	1	5
SNP	192	638	NC_000913	2366708	T
SNP	193	639	NC_000913	2397444	A
MOB	194	701,702	NC_000913	2406780	IS1	-1	8
SNP	195	640	NC_000913	2509606	T
SNP	196	641	NC_000913	2509728	T
SNP	197	642	NC_000913	2543800	T
DEL	198	676,710	NC_000913	2558699	6790
MOB	199	685,686	NC_000913	2666074	IS1	1	9
SNP	200	643	NC_000913	3268970	G
SNP	201	644	NC_000913	3486205	A
SNP	202	645	NC_000913	3518339	A
INS	203	646	NC_000913	3560455	G
SNP	204	647	NC_000913	3565710	A
SNP	205	648	NC_000913	3582671	A
SNP	206	649	NC_000913	3586071	A
SNP	207	650	NC_000913	3618708	A
SNP	208	651	NC_000913	3641902	A
SNP	209	652	NC_000913	3645029	A
DEL	210	678,712	NC_000913	3682261	34
SNP	211	653	NC_000913	3683289	A
SNP	212	654	NC_000913	3731941	A
MOB	213	711,713	NC_000913	3737137	IS2	1	5
SNP	214	655	NC_000913	3747839	A
SNP	215	656	NC_000913	3812084	A
MOB	216	714,715	NC_000913	4123923	IS2	-1	5
MOB	217	716,717	NC_000913	4135180	IS2	-1	5
INS	218	657	NC_000913	4146389	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
INS	219	658,659	NC_000913	4296381	GC
SNP	220	660	NC_000913	4347198	C
SNP	221	661	NC_000913	4377545	T
SNP	222	662	NC_000913	4380268	T
SNP	223	663	NC_000913	4385242	A
SNP	224	664	NC_000913	4394248	T
SNP	225	665	NC_000913	4414650	T
SNP	226	666	NC_000913	4415410	T
SNP	227	667	NC_000913	4434410	C
MOB	228	707,708	NC_000913	4536236	IS5	1	4
DEL	229	668	NC_000913	4542683	1
SNP	230	669	NC_000913	4623523	A
RA	231	.	NC_000913	71134	0	G	A	consensus_score=159.5	frequency=1	major_base=A	major_cov=23/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/23
RA	232	.	NC_000913	383203	0	A	G	consensus_score=193.1	frequency=1	major_base=G	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	233	.	NC_000913	434848	0	G	A	bias_e_value=3905440	bias_p_value=0.84139	consensus_score=117.9	fisher_strand_p_value=0.4926	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/20	major_frequency=9.545e-01	minor_base=G	minor_cov=2/0	new_cov=22/20	polymorphism_frequency=9.545e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=2/0	total_cov=24/20
RA	234	.	NC_000913	442290	0	G	A	consensus_score=127.0	frequency=1	major_base=A	major_cov=15/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/24
RA	235	.	NC_000913	446036	0	C	T	consensus_score=167.0	frequency=1	major_base=T	major_cov=28/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/21
RA	236	.	NC_000913	448621	0	G	A	consensus_score=154.4	frequency=1	major_base=A	major_cov=14/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/31
RA	237	.	NC_000913	452197	0	G	A	bias_e_value=3746830	bias_p_value=0.807219	consensus_score=116.0	fisher_strand_p_value=0.447368	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/16	major_frequency=9.737e-01	minor_base=C	minor_cov=0/1	new_cov=21/16	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	238	.	NC_000913	454918	0	G	A	bias_e_value=2550680	bias_p_value=0.54952	consensus_score=116.2	fisher_strand_p_value=0.217639	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/20	major_frequency=9.474e-01	minor_base=C	minor_cov=2/0	new_cov=16/20	polymorphism_frequency=9.474e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/20
RA	239	.	NC_000913	460678	0	G	A	consensus_score=181.8	frequency=1	major_base=A	major_cov=29/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/23
RA	240	.	NC_000913	463581	0	G	A	consensus_score=149.7	frequency=1	major_base=A	major_cov=21/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	241	.	NC_000913	464699	0	G	A	consensus_score=63.8	frequency=1	major_base=A	major_cov=10/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/10
RA	242	.	NC_000913	464872	0	G	A	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=93.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997704	major_base=A	major_cov=17/12	major_frequency=9.667e-01	minor_base=C	minor_cov=1/0	new_cov=17/12	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	243	.	NC_000913	469384	0	G	A	bias_e_value=4638260	bias_p_value=0.99927	consensus_score=188.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.962022	major_base=A	major_cov=24/33	major_frequency=9.828e-01	minor_base=G	minor_cov=0/1	new_cov=24/33	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=25/34
RA	244	.	NC_000913	469435	0	G	A	consensus_score=187.9	frequency=1	major_base=A	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	245	.	NC_000913	474597	0	G	A	consensus_score=161.0	frequency=1	major_base=A	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	246	.	NC_000913	477894	0	G	A	consensus_score=104.7	frequency=1	major_base=A	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	247	.	NC_000913	481484	0	G	A	consensus_score=151.6	frequency=1	major_base=A	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	248	.	NC_000913	485018	0	G	A	consensus_score=309.5	frequency=1	major_base=A	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	249	.	NC_000913	488839	0	G	A	bias_e_value=3914910	bias_p_value=0.843431	consensus_score=232.7	fisher_strand_p_value=0.495495	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/38	major_frequency=9.733e-01	minor_base=G	minor_cov=0/2	new_cov=35/38	polymorphism_frequency=9.733e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=36/40
RA	250	.	NC_000913	492872	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=378.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/63	major_frequency=9.907e-01	minor_base=G	minor_cov=0/1	new_cov=43/63	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/64
RA	251	.	NC_000913	495221	0	G	A	consensus_score=199.1	frequency=1	major_base=A	major_cov=28/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/31
RA	252	.	NC_000913	500604	0	G	A	consensus_score=155.9	frequency=1	major_base=A	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	253	.	NC_000913	501813	0	G	A	consensus_score=140.7	frequency=1	major_base=A	major_cov=16/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/24
RA	254	.	NC_000913	503911	0	G	A	bias_e_value=4641620	bias_p_value=0.999992	consensus_score=69.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996055	major_base=A	major_cov=12/10	major_frequency=9.565e-01	minor_base=G	minor_cov=1/0	new_cov=12/10	polymorphism_frequency=9.565e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=14/10
RA	255	.	NC_000913	518281	0	G	A	bias_e_value=4640780	bias_p_value=0.999812	consensus_score=129.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.980677	major_base=A	major_cov=21/19	major_frequency=9.756e-01	minor_base=.	minor_cov=1/0	new_cov=21/19	polymorphism_frequency=9.756e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=22/19
RA	256	.	NC_000913	531251	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=72.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=10/14	major_frequency=9.600e-01	minor_base=G	minor_cov=0/1	new_cov=10/14	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	257	.	NC_000913	536970	0	G	A	consensus_score=108.3	frequency=1	major_base=A	major_cov=18/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/15
RA	258	.	NC_000913	540621	0	C	T	bias_e_value=3884.98	bias_p_value=0.000836982	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.4	fisher_strand_p_value=8.02442e-05	frequency=2.414e-01	ks_quality_p_value=1	major_base=C	major_cov=18/26	major_frequency=7.586e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.414e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=18/26	total_cov=34/26
RA	259	.	NC_000913	557635	0	A	T	bias_e_value=3889200	bias_p_value=0.837891	consensus_score=135.3	fisher_strand_p_value=0.498258	frequency=1	ks_quality_p_value=0.978799	major_base=T	major_cov=18/22	major_frequency=9.524e-01	minor_base=G	minor_cov=0/2	new_cov=18/22	polymorphism_frequency=9.524e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/24
RA	260	.	NC_000913	566173	0	C	G	bias_e_value=4637730	bias_p_value=0.999156	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.6	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=0.959189	major_base=C	major_cov=31/17	major_frequency=7.500e-01	minor_base=G	minor_cov=11/5	new_cov=11/5	polymorphism_frequency=2.500e-01	polymorphism_score=47.7	prediction=polymorphism	ref_cov=31/17	total_cov=42/23
RA	261	.	NC_000913	566205	0	T	C	bias_e_value=3198260	bias_p_value=0.689036	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.5	fisher_strand_p_value=1	frequency=3.043e-01	ks_quality_p_value=0.323897	major_base=T	major_cov=29/19	major_frequency=6.957e-01	minor_base=C	minor_cov=13/8	new_cov=13/8	polymorphism_frequency=3.043e-01	polymorphism_score=56.8	prediction=polymorphism	ref_cov=29/19	total_cov=42/27
RA	262	.	NC_000913	566245	0	G	A	bias_e_value=3805210	bias_p_value=0.819796	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.0	fisher_strand_p_value=0.60054	frequency=3.485e-01	ks_quality_p_value=0.771563	major_base=G	major_cov=24/19	major_frequency=6.515e-01	minor_base=A	minor_cov=15/8	new_cov=15/8	polymorphism_frequency=3.485e-01	polymorphism_score=55.6	prediction=polymorphism	ref_cov=24/19	total_cov=39/27
RA	263	.	NC_000913	566277	0	C	T	bias_e_value=4641040	bias_p_value=0.999867	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.8	fisher_strand_p_value=1	frequency=3.438e-01	ks_quality_p_value=0.983764	major_base=C	major_cov=26/16	major_frequency=6.562e-01	minor_base=T	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=3.438e-01	polymorphism_score=50.8	prediction=polymorphism	ref_cov=26/16	total_cov=40/24
RA	264	.	NC_000913	566323	0	C	T	bias_e_value=3890820	bias_p_value=0.838241	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.9	fisher_strand_p_value=0.745051	frequency=2.407e-01	ks_quality_p_value=0.655233	major_base=C	major_cov=26/15	major_frequency=7.593e-01	minor_base=T	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.407e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=26/15	total_cov=33/21
RA	265	.	NC_000913	566326	0	T	C	bias_e_value=3433610	bias_p_value=0.739739	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.9	fisher_strand_p_value=0.745051	frequency=2.407e-01	ks_quality_p_value=0.499135	major_base=T	major_cov=26/15	major_frequency=7.593e-01	minor_base=C	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.407e-01	polymorphism_score=32.0	prediction=polymorphism	ref_cov=26/15	total_cov=33/21
RA	266	.	NC_000913	566332	0	T	G	bias_e_value=3979520	bias_p_value=0.85735	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.2	fisher_strand_p_value=0.517276	frequency=2.222e-01	ks_quality_p_value=0.997358	major_base=T	major_cov=26/16	major_frequency=7.778e-01	minor_base=G	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=2.222e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=26/16	total_cov=32/22
RA	267	.	NC_000913	566356	0	T	C	bias_e_value=2579960	bias_p_value=0.555829	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.3	fisher_strand_p_value=0.327019	frequency=2.157e-01	ks_quality_p_value=0.678253	major_base=T	major_cov=25/15	major_frequency=7.843e-01	minor_base=C	minor_cov=5/6	new_cov=5/6	polymorphism_frequency=2.157e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=25/15	total_cov=30/21
RA	268	.	NC_000913	566435	0	G	A	bias_e_value=4213540	bias_p_value=0.907768	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.1	fisher_strand_p_value=1	frequency=2.400e-01	ks_quality_p_value=0.602501	major_base=G	major_cov=21/17	major_frequency=7.600e-01	minor_base=A	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.400e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=21/17	total_cov=28/22
RA	269	.	NC_000913	566444	0	T	C	bias_e_value=4527940	bias_p_value=0.975503	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.2	fisher_strand_p_value=1	frequency=2.115e-01	ks_quality_p_value=0.786979	major_base=T	major_cov=24/17	major_frequency=7.885e-01	minor_base=C	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.115e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=24/17	total_cov=30/22
RA	270	.	NC_000913	566451	0	T	C	bias_e_value=4131870	bias_p_value=0.890173	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.5	fisher_strand_p_value=1	frequency=2.407e-01	ks_quality_p_value=0.569582	major_base=T	major_cov=24/17	major_frequency=7.593e-01	minor_base=C	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.407e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=24/17	total_cov=31/23
RA	271	.	NC_000913	566463	0	T	C	bias_e_value=4446760	bias_p_value=0.958013	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.5	fisher_strand_p_value=0.742039	frequency=2.222e-01	ks_quality_p_value=0.976472	major_base=T	major_cov=25/17	major_frequency=7.778e-01	minor_base=C	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=2.222e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=25/17	total_cov=32/23
RA	272	.	NC_000913	566468	0	C	T	bias_e_value=1904050	bias_p_value=0.410209	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.5	fisher_strand_p_value=0.756109	frequency=2.364e-01	ks_quality_p_value=0.181779	major_base=C	major_cov=25/17	major_frequency=7.636e-01	minor_base=T	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.364e-01	polymorphism_score=26.8	prediction=polymorphism	ref_cov=25/17	total_cov=32/23
RA	273	.	NC_000913	566492	0	G	T	bias_e_value=3195670	bias_p_value=0.688477	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.4	fisher_strand_p_value=0.785363	frequency=3.226e-01	ks_quality_p_value=0.411786	major_base=G	major_cov=24/18	major_frequency=6.774e-01	minor_base=T	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=3.226e-01	polymorphism_score=57.9	prediction=polymorphism	ref_cov=24/18	total_cov=34/28
RA	274	.	NC_000913	566493	0	G	A	bias_e_value=1962600	bias_p_value=0.422824	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.8	fisher_strand_p_value=0.580832	frequency=3.065e-01	ks_quality_p_value=0.247707	major_base=G	major_cov=25/18	major_frequency=6.935e-01	minor_base=A	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=3.065e-01	polymorphism_score=45.6	prediction=polymorphism	ref_cov=25/18	total_cov=34/28
RA	275	.	NC_000913	566498	0	C	T	bias_e_value=3008950	bias_p_value=0.64825	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.1	fisher_strand_p_value=0.784008	frequency=3.016e-01	ks_quality_p_value=0.369139	major_base=C	major_cov=24/20	major_frequency=6.984e-01	minor_base=T	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=3.016e-01	polymorphism_score=42.9	prediction=polymorphism	ref_cov=24/20	total_cov=33/30
RA	276	.	NC_000913	566510	0	G	C	bias_e_value=3366080	bias_p_value=0.725191	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.9	fisher_strand_p_value=0.789294	frequency=2.923e-01	ks_quality_p_value=0.452886	major_base=G	major_cov=24/22	major_frequency=7.077e-01	minor_base=C	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.923e-01	polymorphism_score=56.9	prediction=polymorphism	ref_cov=24/22	total_cov=33/34
RA	277	.	NC_000913	566513	0	C	T	bias_e_value=1688910	bias_p_value=0.36386	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.2	fisher_strand_p_value=0.785194	frequency=2.727e-01	ks_quality_p_value=0.14654	major_base=C	major_cov=24/24	major_frequency=7.273e-01	minor_base=T	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=2.727e-01	polymorphism_score=43.2	prediction=polymorphism	ref_cov=24/24	total_cov=33/34
RA	278	.	NC_000913	566519	0	T	C	bias_e_value=3374900	bias_p_value=0.72709	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.5	fisher_strand_p_value=1	frequency=2.794e-01	ks_quality_p_value=0.359311	major_base=T	major_cov=24/25	major_frequency=7.206e-01	minor_base=C	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.794e-01	polymorphism_score=49.2	prediction=polymorphism	ref_cov=24/25	total_cov=33/35
RA	279	.	NC_000913	566522	0	C	A	bias_e_value=4633660	bias_p_value=0.998278	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.9	fisher_strand_p_value=1	frequency=2.879e-01	ks_quality_p_value=0.941897	major_base=C	major_cov=23/24	major_frequency=7.121e-01	minor_base=A	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.879e-01	polymorphism_score=50.3	prediction=polymorphism	ref_cov=23/24	total_cov=32/35
RA	280	.	NC_000913	566528	0	A	G	bias_e_value=103506	bias_p_value=0.0222995	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.7	fisher_strand_p_value=1	frequency=2.794e-01	ks_quality_p_value=0.00332519	major_base=A	major_cov=24/25	major_frequency=7.206e-01	minor_base=G	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.794e-01	polymorphism_score=51.4	prediction=polymorphism	ref_cov=24/25	total_cov=33/35
RA	281	.	NC_000913	566530	1	.	T	bias_e_value=3616520	bias_p_value=0.779146	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.0	fisher_strand_p_value=1	frequency=2.754e-01	ks_quality_p_value=0.41405	major_base=.	major_cov=24/26	major_frequency=7.246e-01	minor_base=T	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.754e-01	polymorphism_score=95.2	prediction=polymorphism	ref_cov=24/26	total_cov=33/36
RA	282	.	NC_000913	566532	0	A	T	bias_e_value=2476670	bias_p_value=0.533575	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.3	fisher_strand_p_value=1	frequency=2.714e-01	ks_quality_p_value=0.207344	major_base=A	major_cov=24/27	major_frequency=7.286e-01	minor_base=T	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.714e-01	polymorphism_score=57.0	prediction=polymorphism	ref_cov=24/27	total_cov=33/37
RA	283	.	NC_000913	566535	0	T	.	bias_e_value=1256060	bias_p_value=0.270607	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.4	fisher_strand_p_value=1	frequency=2.714e-01	ks_quality_p_value=0.0755168	major_base=T	major_cov=24/27	major_frequency=7.286e-01	minor_base=.	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.714e-01	polymorphism_score=71.7	prediction=polymorphism	ref_cov=24/27	total_cov=33/37
RA	284	.	NC_000913	566536	0	G	A	bias_e_value=3757070	bias_p_value=0.809425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.3	fisher_strand_p_value=1	frequency=2.609e-01	ks_quality_p_value=0.450121	major_base=G	major_cov=24/27	major_frequency=7.391e-01	minor_base=A	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=2.609e-01	polymorphism_score=45.8	prediction=polymorphism	ref_cov=24/27	total_cov=33/37
RA	285	.	NC_000913	566543	0	A	T	bias_e_value=2102780	bias_p_value=0.453025	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.0	fisher_strand_p_value=1	frequency=3.014e-01	ks_quality_p_value=0.159897	major_base=A	major_cov=24/27	major_frequency=6.986e-01	minor_base=T	minor_cov=10/12	new_cov=10/12	polymorphism_frequency=3.014e-01	polymorphism_score=67.5	prediction=polymorphism	ref_cov=24/27	total_cov=34/39
RA	286	.	NC_000913	566547	0	C	A	bias_e_value=1565130	bias_p_value=0.337192	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.2	fisher_strand_p_value=1	frequency=3.056e-01	ks_quality_p_value=0.103031	major_base=C	major_cov=24/26	major_frequency=6.944e-01	minor_base=A	minor_cov=10/12	new_cov=10/12	polymorphism_frequency=3.056e-01	polymorphism_score=63.4	prediction=polymorphism	ref_cov=24/26	total_cov=34/38
RA	287	.	NC_000913	566565	0	A	G	bias_e_value=3931280	bias_p_value=0.846957	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.1	fisher_strand_p_value=0.632099	frequency=3.000e-01	ks_quality_p_value=0.79189	major_base=A	major_cov=27/29	major_frequency=7.000e-01	minor_base=G	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=3.000e-01	polymorphism_score=66.3	prediction=polymorphism	ref_cov=27/29	total_cov=37/43
RA	288	.	NC_000913	566570	0	A	C	bias_e_value=2617560	bias_p_value=0.563929	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.4	fisher_strand_p_value=0.806497	frequency=3.038e-01	ks_quality_p_value=0.281742	major_base=A	major_cov=26/29	major_frequency=6.962e-01	minor_base=C	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=3.038e-01	polymorphism_score=73.0	prediction=polymorphism	ref_cov=26/29	total_cov=36/44
RA	289	.	NC_000913	566597	0	T	C	bias_e_value=4584470	bias_p_value=0.98768	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.9	fisher_strand_p_value=1	frequency=3.210e-01	ks_quality_p_value=0.847191	major_base=T	major_cov=24/31	major_frequency=6.790e-01	minor_base=C	minor_cov=11/15	new_cov=11/15	polymorphism_frequency=3.210e-01	polymorphism_score=73.8	prediction=polymorphism	ref_cov=24/31	total_cov=35/46
RA	290	.	NC_000913	566651	0	T	C	bias_e_value=3321740	bias_p_value=0.715637	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.5	fisher_strand_p_value=0.477488	frequency=3.373e-01	ks_quality_p_value=0.72942	major_base=T	major_cov=23/32	major_frequency=6.627e-01	minor_base=C	minor_cov=9/19	new_cov=9/19	polymorphism_frequency=3.373e-01	polymorphism_score=82.5	prediction=polymorphism	ref_cov=23/32	total_cov=33/51
RA	291	.	NC_000913	566728	0	G	T	bias_e_value=3133220	bias_p_value=0.675022	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.3	fisher_strand_p_value=0.566533	frequency=2.464e-01	ks_quality_p_value=0.550141	major_base=G	major_cov=21/31	major_frequency=7.536e-01	minor_base=T	minor_cov=5/12	new_cov=5/12	polymorphism_frequency=2.464e-01	polymorphism_score=42.8	prediction=polymorphism	ref_cov=21/31	total_cov=27/43
RA	292	.	NC_000913	566740	0	A	G	bias_e_value=2480940	bias_p_value=0.534494	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.1	fisher_strand_p_value=0.768112	frequency=2.388e-01	ks_quality_p_value=0.270702	major_base=A	major_cov=20/31	major_frequency=7.612e-01	minor_base=G	minor_cov=5/11	new_cov=5/11	polymorphism_frequency=2.388e-01	polymorphism_score=38.3	prediction=polymorphism	ref_cov=20/31	total_cov=25/42
RA	293	.	NC_000913	566742	0	A	C	bias_e_value=4362650	bias_p_value=0.939892	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.8	fisher_strand_p_value=1	frequency=2.537e-01	ks_quality_p_value=0.673955	major_base=A	major_cov=19/31	major_frequency=7.463e-01	minor_base=C	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=2.537e-01	polymorphism_score=42.2	prediction=polymorphism	ref_cov=19/31	total_cov=25/42
RA	294	.	NC_000913	566756	0	G	C	bias_e_value=2532110	bias_p_value=0.545518	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.7	fisher_strand_p_value=0.393156	frequency=2.462e-01	ks_quality_p_value=0.546919	major_base=G	major_cov=22/27	major_frequency=7.538e-01	minor_base=C	minor_cov=5/11	new_cov=5/11	polymorphism_frequency=2.462e-01	polymorphism_score=49.2	prediction=polymorphism	ref_cov=22/27	total_cov=27/39
RA	295	.	NC_000913	566770	0	C	A	bias_e_value=2302480	bias_p_value=0.496048	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.7	fisher_strand_p_value=1	frequency=2.388e-01	ks_quality_p_value=0.184336	major_base=C	major_cov=21/30	major_frequency=7.612e-01	minor_base=A	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.388e-01	polymorphism_score=38.7	prediction=polymorphism	ref_cov=21/30	total_cov=27/40
RA	296	.	NC_000913	568052	0	T	C	bias_e_value=137187	bias_p_value=0.0295557	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.9	fisher_strand_p_value=0.36036	frequency=2.333e-01	ks_quality_p_value=0.0128681	major_base=T	major_cov=25/21	major_frequency=7.667e-01	minor_base=C	minor_cov=5/9	new_cov=5/9	polymorphism_frequency=2.333e-01	polymorphism_score=35.3	prediction=polymorphism	ref_cov=25/21	total_cov=30/30
RA	297	.	NC_000913	568067	0	G	A	bias_e_value=46056.6	bias_p_value=0.00992246	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.6	fisher_strand_p_value=0.338661	frequency=2.182e-01	ks_quality_p_value=0.00383129	major_base=G	major_cov=22/21	major_frequency=7.818e-01	minor_base=A	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=2.182e-01	polymorphism_score=27.4	prediction=polymorphism	ref_cov=22/21	total_cov=26/29
RA	298	.	NC_000913	568076	0	A	T	bias_e_value=2388610	bias_p_value=0.514604	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.5	fisher_strand_p_value=0.511681	frequency=2.264e-01	ks_quality_p_value=0.382086	major_base=A	major_cov=20/21	major_frequency=7.736e-01	minor_base=T	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=2.264e-01	polymorphism_score=27.2	prediction=polymorphism	ref_cov=20/21	total_cov=24/29
RA	299	.	NC_000913	568077	0	A	C	bias_e_value=1714090	bias_p_value=0.369285	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.1	fisher_strand_p_value=0.345626	frequency=2.308e-01	ks_quality_p_value=0.340206	major_base=A	major_cov=20/20	major_frequency=7.692e-01	minor_base=C	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=2.308e-01	polymorphism_score=35.5	prediction=polymorphism	ref_cov=20/20	total_cov=24/29
RA	300	.	NC_000913	568079	0	C	T	bias_e_value=342702	bias_p_value=0.0738319	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.9	fisher_strand_p_value=0.345626	frequency=2.308e-01	ks_quality_p_value=0.0405537	major_base=C	major_cov=20/20	major_frequency=7.692e-01	minor_base=T	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=2.308e-01	polymorphism_score=26.1	prediction=polymorphism	ref_cov=20/20	total_cov=24/29
RA	301	.	NC_000913	568085	0	C	T	bias_e_value=51580.4	bias_p_value=0.0111125	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.3	fisher_strand_p_value=0.21112	frequency=2.549e-01	ks_quality_p_value=0.00700242	major_base=C	major_cov=20/18	major_frequency=7.451e-01	minor_base=T	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=2.549e-01	polymorphism_score=28.9	prediction=polymorphism	ref_cov=20/18	total_cov=24/27
RA	302	.	NC_000913	568086	0	G	A	bias_e_value=458984	bias_p_value=0.0988839	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.3	fisher_strand_p_value=0.21112	frequency=2.549e-01	ks_quality_p_value=0.0955127	major_base=G	major_cov=20/18	major_frequency=7.451e-01	minor_base=A	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=2.549e-01	polymorphism_score=27.7	prediction=polymorphism	ref_cov=20/18	total_cov=24/27
RA	303	.	NC_000913	568088	0	T	C	bias_e_value=2295320	bias_p_value=0.494505	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.4	fisher_strand_p_value=0.320891	frequency=2.449e-01	ks_quality_p_value=0.571612	major_base=T	major_cov=20/17	major_frequency=7.551e-01	minor_base=C	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=2.449e-01	polymorphism_score=29.6	prediction=polymorphism	ref_cov=20/17	total_cov=24/27
RA	304	.	NC_000913	568091	0	T	A	bias_e_value=970479	bias_p_value=0.20908	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.8	fisher_strand_p_value=0.344692	frequency=2.400e-01	ks_quality_p_value=0.154151	major_base=T	major_cov=19/19	major_frequency=7.600e-01	minor_base=A	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=2.400e-01	polymorphism_score=32.3	prediction=polymorphism	ref_cov=19/19	total_cov=24/27
RA	305	.	NC_000913	578331	0	G	T	bias_e_value=2347290	bias_p_value=0.505701	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.9	fisher_strand_p_value=0.317462	frequency=2.308e-01	ks_quality_p_value=0.598804	major_base=G	major_cov=13/27	major_frequency=7.692e-01	minor_base=T	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=2.308e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=13/27	total_cov=19/33
RA	306	.	NC_000913	578427	0	G	C	bias_e_value=1707430	bias_p_value=0.367849	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.3	fisher_strand_p_value=0.255821	frequency=4.074e-01	ks_quality_p_value=0.457015	major_base=G	major_cov=10/22	major_frequency=5.926e-01	minor_base=C	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=4.074e-01	polymorphism_score=78.5	prediction=polymorphism	ref_cov=10/22	total_cov=21/33
RA	307	.	NC_000913	578571	0	C	T	bias_e_value=1909430	bias_p_value=0.411368	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.6	fisher_strand_p_value=0.771014	frequency=5.625e-01	ks_quality_p_value=0.179024	major_base=T	major_cov=12/15	major_frequency=5.625e-01	minor_base=C	minor_cov=8/13	new_cov=12/15	polymorphism_frequency=5.625e-01	polymorphism_score=62.5	prediction=polymorphism	ref_cov=8/13	total_cov=20/28
RA	308	.	NC_000913	578574	0	A	C	bias_e_value=2329730	bias_p_value=0.501918	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.0	fisher_strand_p_value=1	frequency=5.510e-01	ks_quality_p_value=0.187827	major_base=C	major_cov=12/15	major_frequency=5.510e-01	minor_base=A	minor_cov=9/13	new_cov=12/15	polymorphism_frequency=5.510e-01	polymorphism_score=65.2	prediction=polymorphism	ref_cov=9/13	total_cov=21/28
RA	309	.	NC_000913	578605	0	T	G	bias_e_value=2676770	bias_p_value=0.576685	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.8	fisher_strand_p_value=1	frequency=5.490e-01	ks_quality_p_value=0.235944	major_base=G	major_cov=13/15	major_frequency=5.490e-01	minor_base=T	minor_cov=10/13	new_cov=13/15	polymorphism_frequency=5.490e-01	polymorphism_score=61.9	prediction=polymorphism	ref_cov=10/13	total_cov=23/28
RA	310	.	NC_000913	578729	0	A	G	bias_e_value=436011	bias_p_value=0.0939344	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.9	fisher_strand_p_value=0.181353	frequency=6.102e-01	ks_quality_p_value=0.104256	major_base=G	major_cov=12/24	major_frequency=6.102e-01	minor_base=A	minor_cov=12/11	new_cov=12/24	polymorphism_frequency=6.102e-01	polymorphism_score=60.2	prediction=polymorphism	ref_cov=12/11	total_cov=24/36
RA	311	.	NC_000913	578809	0	T	C	bias_e_value=3031140	bias_p_value=0.65303	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.4	fisher_strand_p_value=0.301179	frequency=4.516e-01	ks_quality_p_value=0.973784	major_base=T	major_cov=16/18	major_frequency=5.484e-01	minor_base=C	minor_cov=9/19	new_cov=9/19	polymorphism_frequency=4.516e-01	polymorphism_score=76.3	prediction=polymorphism	ref_cov=16/18	total_cov=26/37
RA	312	.	NC_000913	578811	0	T	G	bias_e_value=3717320	bias_p_value=0.800861	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.5	fisher_strand_p_value=0.43955	frequency=4.833e-01	ks_quality_p_value=1	major_base=T	major_cov=14/17	major_frequency=5.167e-01	minor_base=G	minor_cov=10/19	new_cov=10/19	polymorphism_frequency=4.833e-01	polymorphism_score=80.6	prediction=polymorphism	ref_cov=14/17	total_cov=25/36
RA	313	.	NC_000913	578831	0	T	C	bias_e_value=4213400	bias_p_value=0.907738	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.1	fisher_strand_p_value=0.602442	frequency=4.500e-01	ks_quality_p_value=1	major_base=T	major_cov=15/18	major_frequency=5.500e-01	minor_base=C	minor_cov=10/17	new_cov=10/17	polymorphism_frequency=4.500e-01	polymorphism_score=74.2	prediction=polymorphism	ref_cov=15/18	total_cov=25/35
RA	314	.	NC_000913	579004	0	C	T	bias_e_value=2374270	bias_p_value=0.511514	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.9	fisher_strand_p_value=0.227081	frequency=5.217e-01	ks_quality_p_value=0.852638	major_base=T	major_cov=17/7	major_frequency=5.217e-01	minor_base=C	minor_cov=11/11	new_cov=17/7	polymorphism_frequency=5.217e-01	polymorphism_score=65.1	prediction=polymorphism	ref_cov=11/11	total_cov=28/18
RA	315	.	NC_000913	579099	0	A	.	bias_e_value=4108630	bias_p_value=0.885165	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.5	fisher_strand_p_value=0.560805	frequency=4.565e-01	ks_quality_p_value=1	major_base=A	major_cov=13/12	major_frequency=5.435e-01	minor_base=.	minor_cov=13/8	new_cov=13/8	polymorphism_frequency=4.565e-01	polymorphism_score=79.7	prediction=polymorphism	ref_cov=13/12	total_cov=26/20
RA	316	.	NC_000913	579127	0	T	C	bias_e_value=4417770	bias_p_value=0.951767	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.5	fisher_strand_p_value=0.756335	frequency=4.419e-01	ks_quality_p_value=0.933372	major_base=T	major_cov=13/11	major_frequency=5.581e-01	minor_base=C	minor_cov=12/7	new_cov=12/7	polymorphism_frequency=4.419e-01	polymorphism_score=49.2	prediction=polymorphism	ref_cov=13/11	total_cov=25/18
RA	317	.	NC_000913	579134	0	T	C	bias_e_value=4383920	bias_p_value=0.944475	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.9	fisher_strand_p_value=0.757361	frequency=4.286e-01	ks_quality_p_value=0.905556	major_base=T	major_cov=13/11	major_frequency=5.714e-01	minor_base=C	minor_cov=11/7	new_cov=11/7	polymorphism_frequency=4.286e-01	polymorphism_score=49.2	prediction=polymorphism	ref_cov=13/11	total_cov=24/18
RA	318	.	NC_000913	579146	0	A	G	bias_e_value=3991560	bias_p_value=0.859943	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.7	fisher_strand_p_value=0.76618	frequency=4.545e-01	ks_quality_p_value=0.678495	major_base=A	major_cov=13/11	major_frequency=5.455e-01	minor_base=G	minor_cov=12/8	new_cov=12/8	polymorphism_frequency=4.545e-01	polymorphism_score=53.3	prediction=polymorphism	ref_cov=13/11	total_cov=25/19
RA	319	.	NC_000913	579271	0	G	A	bias_e_value=3814400	bias_p_value=0.821776	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.4	fisher_strand_p_value=0.554444	frequency=5.000e-01	ks_quality_p_value=0.84037	major_base=G	major_cov=14/9	major_frequency=5.000e-01	minor_base=A	minor_cov=11/12	new_cov=11/12	polymorphism_frequency=5.000e-01	polymorphism_score=64.5	prediction=polymorphism	ref_cov=14/9	total_cov=25/21
RA	320	.	NC_000913	579285	0	T	C	bias_e_value=1696410	bias_p_value=0.365475	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.5	fisher_strand_p_value=0.394486	frequency=5.217e-01	ks_quality_p_value=0.293574	major_base=C	major_cov=11/13	major_frequency=5.217e-01	minor_base=T	minor_cov=13/9	new_cov=11/13	polymorphism_frequency=5.217e-01	polymorphism_score=59.8	prediction=polymorphism	ref_cov=13/9	total_cov=24/22
RA	321	.	NC_000913	579385	0	A	G	bias_e_value=1853520	bias_p_value=0.399324	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.1	fisher_strand_p_value=0.543374	frequency=5.814e-01	ks_quality_p_value=0.242954	major_base=G	major_cov=11/14	major_frequency=5.814e-01	minor_base=A	minor_cov=10/8	new_cov=11/14	polymorphism_frequency=5.814e-01	polymorphism_score=49.6	prediction=polymorphism	ref_cov=10/8	total_cov=21/22
RA	322	.	NC_000913	579457	0	A	G	bias_e_value=1031670	bias_p_value=0.222264	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.2	fisher_strand_p_value=0.741054	frequency=6.410e-01	ks_quality_p_value=0.0778503	major_base=G	major_cov=13/12	major_frequency=6.410e-01	minor_base=A	minor_cov=6/8	new_cov=13/12	polymorphism_frequency=6.410e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=6/8	total_cov=19/20
RA	323	.	NC_000913	579502	0	A	G	bias_e_value=835910	bias_p_value=0.180089	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.5	fisher_strand_p_value=0.196286	frequency=6.585e-01	ks_quality_p_value=0.221967	major_base=G	major_cov=14/13	major_frequency=6.585e-01	minor_base=A	minor_cov=4/10	new_cov=14/13	polymorphism_frequency=6.585e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=4/10	total_cov=18/23
RA	324	.	NC_000913	579540	0	T	C	bias_e_value=2538640	bias_p_value=0.546926	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.5	fisher_strand_p_value=0.365118	frequency=6.222e-01	ks_quality_p_value=0.591431	major_base=C	major_cov=16/12	major_frequency=6.222e-01	minor_base=T	minor_cov=7/10	new_cov=16/12	polymorphism_frequency=6.222e-01	polymorphism_score=40.3	prediction=polymorphism	ref_cov=7/10	total_cov=23/22
RA	325	.	NC_000913	579651	0	C	T	bias_e_value=3097310	bias_p_value=0.667287	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.6	fisher_strand_p_value=0.375944	frequency=6.122e-01	ks_quality_p_value=0.811551	major_base=T	major_cov=19/11	major_frequency=6.122e-01	minor_base=C	minor_cov=9/10	new_cov=19/11	polymorphism_frequency=6.122e-01	polymorphism_score=53.2	prediction=polymorphism	ref_cov=9/10	total_cov=29/21
RA	326	.	NC_000913	579671	0	T	C	bias_e_value=3105230	bias_p_value=0.668992	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.5	fisher_strand_p_value=0.399636	frequency=5.962e-01	ks_quality_p_value=0.767042	major_base=C	major_cov=19/12	major_frequency=5.962e-01	minor_base=T	minor_cov=10/11	new_cov=19/12	polymorphism_frequency=5.962e-01	polymorphism_score=57.0	prediction=polymorphism	ref_cov=10/11	total_cov=29/23
RA	327	.	NC_000913	579717	0	A	C	bias_e_value=4079640	bias_p_value=0.87892	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.5	fisher_strand_p_value=0.58804	frequency=5.536e-01	ks_quality_p_value=0.935622	major_base=C	major_cov=20/11	major_frequency=5.536e-01	minor_base=A	minor_cov=14/11	new_cov=20/11	polymorphism_frequency=5.536e-01	polymorphism_score=62.5	prediction=polymorphism	ref_cov=14/11	total_cov=34/22
RA	328	.	NC_000913	579811	0	C	T	bias_e_value=3856180	bias_p_value=0.830777	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.0	fisher_strand_p_value=0.78514	frequency=4.800e-01	ks_quality_p_value=0.608712	major_base=C	major_cov=13/13	major_frequency=5.200e-01	minor_base=T	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=4.800e-01	polymorphism_score=60.6	prediction=polymorphism	ref_cov=13/13	total_cov=26/24
RA	329	.	NC_000913	580020	0	G	A	bias_e_value=815543	bias_p_value=0.175701	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.5	fisher_strand_p_value=0.0869715	frequency=4.559e-01	ks_quality_p_value=0.48494	major_base=G	major_cov=24/13	major_frequency=5.441e-01	minor_base=A	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=4.559e-01	polymorphism_score=85.0	prediction=polymorphism	ref_cov=24/13	total_cov=37/31
RA	330	.	NC_000913	580115	0	C	T	bias_e_value=2387170	bias_p_value=0.514292	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.9	fisher_strand_p_value=0.809564	frequency=5.362e-01	ks_quality_p_value=0.24126	major_base=T	major_cov=19/18	major_frequency=5.362e-01	minor_base=C	minor_cov=18/14	new_cov=19/18	polymorphism_frequency=5.362e-01	polymorphism_score=102.1	prediction=polymorphism	ref_cov=18/14	total_cov=37/32
RA	331	.	NC_000913	580119	0	A	G	bias_e_value=2797910	bias_p_value=0.602784	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.2	fisher_strand_p_value=0.634612	frequency=5.211e-01	ks_quality_p_value=0.401046	major_base=G	major_cov=19/18	major_frequency=5.211e-01	minor_base=A	minor_cov=20/14	new_cov=19/18	polymorphism_frequency=5.211e-01	polymorphism_score=96.2	prediction=polymorphism	ref_cov=20/14	total_cov=39/32
RA	332	.	NC_000913	580120	0	C	T	bias_e_value=488371	bias_p_value=0.105215	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.5	fisher_strand_p_value=0.634612	frequency=5.211e-01	ks_quality_p_value=0.0343564	major_base=T	major_cov=19/18	major_frequency=5.211e-01	minor_base=C	minor_cov=20/14	new_cov=19/18	polymorphism_frequency=5.211e-01	polymorphism_score=101.5	prediction=polymorphism	ref_cov=20/14	total_cov=39/32
RA	333	.	NC_000913	580302	0	C	T	bias_e_value=3104740	bias_p_value=0.668886	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.6	fisher_strand_p_value=0.306448	frequency=4.762e-01	ks_quality_p_value=1	major_base=C	major_cov=16/17	major_frequency=5.238e-01	minor_base=T	minor_cov=10/20	new_cov=10/20	polymorphism_frequency=4.762e-01	polymorphism_score=75.7	prediction=polymorphism	ref_cov=16/17	total_cov=27/37
RA	334	.	NC_000913	580437	0	A	C	bias_e_value=3896190	bias_p_value=0.839397	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.2	fisher_strand_p_value=0.498217	frequency=2.727e-01	ks_quality_p_value=0.983099	major_base=A	major_cov=16/16	major_frequency=7.273e-01	minor_base=C	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=2.727e-01	polymorphism_score=30.4	prediction=polymorphism	ref_cov=16/16	total_cov=20/24
RA	335	.	NC_000913	580830	0	T	A	bias_e_value=1272700	bias_p_value=0.274192	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.4	fisher_strand_p_value=0.0800909	frequency=4.082e-01	ks_quality_p_value=0.960276	major_base=T	major_cov=12/17	major_frequency=5.918e-01	minor_base=A	minor_cov=14/6	new_cov=14/6	polymorphism_frequency=4.082e-01	polymorphism_score=63.2	prediction=polymorphism	ref_cov=12/17	total_cov=26/23
RA	336	.	NC_000913	580831	0	G	A	bias_e_value=1312010	bias_p_value=0.282659	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.9	fisher_strand_p_value=0.0832292	frequency=3.958e-01	ks_quality_p_value=0.964062	major_base=G	major_cov=12/17	major_frequency=6.042e-01	minor_base=A	minor_cov=13/6	new_cov=13/6	polymorphism_frequency=3.958e-01	polymorphism_score=45.3	prediction=polymorphism	ref_cov=12/17	total_cov=26/23
RA	337	.	NC_000913	581042	0	T	G	bias_e_value=4640950	bias_p_value=0.999848	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.2	fisher_strand_p_value=1	frequency=3.594e-01	ks_quality_p_value=0.982622	major_base=T	major_cov=22/19	major_frequency=6.406e-01	minor_base=G	minor_cov=13/10	new_cov=13/10	polymorphism_frequency=3.594e-01	polymorphism_score=61.3	prediction=polymorphism	ref_cov=22/19	total_cov=35/29
RA	338	.	NC_000913	581056	0	A	G	bias_e_value=4608130	bias_p_value=0.992777	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.3	fisher_strand_p_value=1	frequency=3.220e-01	ks_quality_p_value=0.882241	major_base=A	major_cov=22/18	major_frequency=6.780e-01	minor_base=G	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=3.220e-01	polymorphism_score=47.7	prediction=polymorphism	ref_cov=22/18	total_cov=34/26
RA	339	.	NC_000913	581073	0	G	A	bias_e_value=4533820	bias_p_value=0.976768	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.8	fisher_strand_p_value=1	frequency=2.769e-01	ks_quality_p_value=0.792336	major_base=G	major_cov=26/21	major_frequency=7.231e-01	minor_base=A	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.769e-01	polymorphism_score=39.9	prediction=polymorphism	ref_cov=26/21	total_cov=36/29
RA	340	.	NC_000913	581118	0	T	C	bias_e_value=3890300	bias_p_value=0.838129	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.3	fisher_strand_p_value=0.525952	frequency=2.600e-01	ks_quality_p_value=0.927888	major_base=T	major_cov=18/19	major_frequency=7.400e-01	minor_base=C	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=2.600e-01	polymorphism_score=27.8	prediction=polymorphism	ref_cov=18/19	total_cov=26/24
RA	341	.	NC_000913	581127	0	G	A	bias_e_value=3399570	bias_p_value=0.732405	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.9	fisher_strand_p_value=0.364768	frequency=2.642e-01	ks_quality_p_value=0.999378	major_base=G	major_cov=19/20	major_frequency=7.358e-01	minor_base=A	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=2.642e-01	polymorphism_score=29.2	prediction=polymorphism	ref_cov=19/20	total_cov=28/25
RA	342	.	NC_000913	581133	0	A	G	bias_e_value=3298630	bias_p_value=0.710658	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.5	fisher_strand_p_value=0.348735	frequency=2.745e-01	ks_quality_p_value=0.985271	major_base=A	major_cov=17/20	major_frequency=7.255e-01	minor_base=G	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=2.745e-01	polymorphism_score=35.4	prediction=polymorphism	ref_cov=17/20	total_cov=26/25
RA	343	.	NC_000913	581227	0	A	C	bias_e_value=4613690	bias_p_value=0.993977	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.9	fisher_strand_p_value=1	frequency=3.091e-01	ks_quality_p_value=0.892269	major_base=A	major_cov=20/18	major_frequency=6.909e-01	minor_base=C	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=3.091e-01	polymorphism_score=36.1	prediction=polymorphism	ref_cov=20/18	total_cov=29/26
RA	344	.	NC_000913	615913	0	G	A	bias_e_value=3924210	bias_p_value=0.845435	consensus_score=203.5	fisher_strand_p_value=0.498361	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/32	major_frequency=9.672e-01	minor_base=T	minor_cov=0/2	new_cov=27/32	polymorphism_frequency=9.672e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	345	.	NC_000913	617063	0	G	A	consensus_score=214.5	frequency=1	major_base=A	major_cov=26/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/38
RA	346	.	NC_000913	618034	0	G	A	consensus_score=72.9	frequency=1	major_base=A	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	347	.	NC_000913	620518	0	G	A	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=216.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998192	major_base=A	major_cov=43/23	major_frequency=9.851e-01	minor_base=C	minor_cov=1/0	new_cov=43/23	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	348	.	NC_000913	628164	0	T	C	consensus_score=179.8	frequency=1	major_base=C	major_cov=29/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/21
RA	349	.	NC_000913	628713	0	G	A	bias_e_value=2293230	bias_p_value=0.494054	consensus_score=141.9	fisher_strand_p_value=0.18617	frequency=1	ks_quality_p_value=0.983828	major_base=A	major_cov=19/27	major_frequency=9.583e-01	minor_base=C	minor_cov=2/0	new_cov=19/27	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	350	.	NC_000913	631633	0	G	A	bias_e_value=4641570	bias_p_value=0.999982	consensus_score=194.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993958	major_base=A	major_cov=30/24	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	351	.	NC_000913	636492	0	G	A	consensus_score=109.2	frequency=1	major_base=A	major_cov=14/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/19
RA	352	.	NC_000913	640256	0	G	A	bias_e_value=4641420	bias_p_value=0.99995	consensus_score=194.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990025	major_base=A	major_cov=28/28	major_frequency=9.825e-01	minor_base=C	minor_cov=1/0	new_cov=28/28	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	353	.	NC_000913	646502	0	G	A	consensus_score=63.6	frequency=1	major_base=A	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	354	.	NC_000913	650230	0	G	A	consensus_score=202.2	frequency=1	major_base=A	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	355	.	NC_000913	661069	0	G	A	bias_e_value=3111560	bias_p_value=0.670355	consensus_score=130.7	fisher_strand_p_value=0.307692	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=11/27	major_frequency=9.744e-01	minor_base=C	minor_cov=1/0	new_cov=11/27	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/27
RA	356	.	NC_000913	663759	0	G	A	bias_e_value=3481870	bias_p_value=0.750136	consensus_score=122.7	fisher_strand_p_value=0.384615	frequency=1	ks_quality_p_value=0.994616	major_base=A	major_cov=24/14	major_frequency=9.744e-01	minor_base=G	minor_cov=0/1	new_cov=24/14	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=24/15
RA	357	.	NC_000913	664542	0	G	A	bias_e_value=3709390	bias_p_value=0.799154	consensus_score=136.7	fisher_strand_p_value=0.44186	frequency=1	ks_quality_p_value=0.990083	major_base=A	major_cov=18/24	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=18/24	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	358	.	NC_000913	664907	0	G	A	bias_e_value=3630990	bias_p_value=0.782263	consensus_score=149.3	fisher_strand_p_value=0.44	frequency=1	ks_quality_p_value=0.949096	major_base=A	major_cov=28/21	major_frequency=9.800e-01	minor_base=C	minor_cov=0/1	new_cov=28/21	polymorphism_frequency=9.800e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=28/23
RA	359	.	NC_000913	670395	0	G	A	bias_e_value=3883750	bias_p_value=0.836716	consensus_score=160.4	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.992376	major_base=A	major_cov=23/25	major_frequency=9.796e-01	minor_base=G	minor_cov=1/0	new_cov=23/25	polymorphism_frequency=9.796e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=1/0	total_cov=24/25
RA	360	.	NC_000913	675064	0	G	A	consensus_score=128.0	frequency=1	major_base=A	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	361	.	NC_000913	677674	0	G	A	consensus_score=161.0	frequency=1	major_base=A	major_cov=22/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	362	.	NC_000913	690238	0	G	A	consensus_score=187.9	frequency=1	major_base=A	major_cov=34/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/21
RA	363	.	NC_000913	694176	0	G	A	bias_e_value=3848430	bias_p_value=0.829109	consensus_score=220.0	fisher_strand_p_value=0.477612	frequency=1	ks_quality_p_value=0.995938	major_base=A	major_cov=35/31	major_frequency=9.851e-01	minor_base=C	minor_cov=0/1	new_cov=35/31	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	364	.	NC_000913	702720	0	G	A	consensus_score=150.3	frequency=1	major_base=A	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	365	.	NC_000913	703258	0	G	A	consensus_score=99.4	frequency=1	major_base=A	major_cov=10/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/19
RA	366	.	NC_000913	705375	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=186.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=26/31	major_frequency=9.828e-01	minor_base=C	minor_cov=0/1	new_cov=26/31	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	367	.	NC_000913	705414	0	G	A	consensus_score=204.7	frequency=1	major_base=A	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	368	.	NC_000913	711853	0	G	A	consensus_score=216.8	frequency=1	major_base=A	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	369	.	NC_000913	715516	0	G	A	consensus_score=81.3	frequency=1	major_base=A	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	370	.	NC_000913	740865	0	G	A	consensus_score=114.8	frequency=1	major_base=A	major_cov=20/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/14
RA	371	.	NC_000913	769601	0	G	A	consensus_score=93.6	frequency=1	major_base=A	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	372	.	NC_000913	770032	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=75.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/13	major_frequency=9.630e-01	minor_base=G	minor_cov=1/0	new_cov=13/13	polymorphism_frequency=9.630e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=1/0	total_cov=14/13
RA	373	.	NC_000913	775011	0	G	A	consensus_score=129.8	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	374	.	NC_000913	776164	0	G	A	bias_e_value=2211300	bias_p_value=0.476403	consensus_score=189.7	fisher_strand_p_value=0.172932	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/33	major_frequency=9.649e-01	minor_base=C	minor_cov=2/0	new_cov=22/33	polymorphism_frequency=9.649e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	375	.	NC_000913	776311	0	G	A	bias_e_value=3682200	bias_p_value=0.793296	consensus_score=179.0	fisher_strand_p_value=0.442308	frequency=1	ks_quality_p_value=0.973216	major_base=A	major_cov=22/29	major_frequency=9.808e-01	minor_base=G	minor_cov=1/0	new_cov=22/29	polymorphism_frequency=9.808e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=23/29
RA	376	.	NC_000913	808428	0	G	A	consensus_score=123.8	frequency=1	major_base=A	major_cov=26/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/17
RA	377	.	NC_000913	808808	0	G	A	bias_e_value=3385680	bias_p_value=0.729412	consensus_score=168.2	fisher_strand_p_value=0.431373	frequency=1	ks_quality_p_value=0.838223	major_base=A	major_cov=21/29	major_frequency=9.804e-01	minor_base=.	minor_cov=1/0	new_cov=21/29	polymorphism_frequency=9.804e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	378	.	NC_000913	811134	0	G	A	bias_e_value=2975550	bias_p_value=0.641054	consensus_score=206.8	fisher_strand_p_value=0.380952	frequency=1	ks_quality_p_value=0.744583	major_base=A	major_cov=39/23	major_frequency=9.841e-01	minor_base=G	minor_cov=0/1	new_cov=39/23	polymorphism_frequency=9.841e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=39/24
RA	379	.	NC_000913	817484	0	G	A	consensus_score=235.0	frequency=1	major_base=A	major_cov=24/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/45
RA	380	.	NC_000913	821009	0	G	A	consensus_score=60.1	frequency=1	major_base=A	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	381	.	NC_000913	826038	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=118.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/24	major_frequency=9.737e-01	minor_base=C	minor_cov=0/1	new_cov=13/24	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	382	.	NC_000913	832937	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=122.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/23	major_frequency=9.744e-01	minor_base=T	minor_cov=0/1	new_cov=15/23	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/24
RA	383	.	NC_000913	833336	0	G	A	consensus_score=107.6	frequency=1	major_base=A	major_cov=19/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/14
RA	384	.	NC_000913	834278	0	G	A	bias_e_value=4641530	bias_p_value=0.999974	consensus_score=223.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99279	major_base=A	major_cov=37/29	major_frequency=9.851e-01	minor_base=C	minor_cov=1/0	new_cov=37/29	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	385	.	NC_000913	854523	0	G	A	consensus_score=163.1	frequency=1	major_base=A	major_cov=16/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/32
RA	386	.	NC_000913	856923	0	G	A	consensus_score=105.4	frequency=1	major_base=A	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	387	.	NC_000913	857458	0	G	A	consensus_score=115.6	frequency=1	major_base=A	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	388	.	NC_000913	858892	0	C	T	bias_e_value=3696370	bias_p_value=0.796348	consensus_score=134.8	fisher_strand_p_value=0.44186	frequency=1	ks_quality_p_value=0.982437	major_base=T	major_cov=18/24	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=18/24	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=19/24
RA	389	.	NC_000913	860260	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=220.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/27	major_frequency=9.844e-01	minor_base=C	minor_cov=1/0	new_cov=36/27	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	390	.	NC_000913	865295	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=188.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/36	major_frequency=9.825e-01	minor_base=T	minor_cov=0/1	new_cov=20/36	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/37
RA	391	.	NC_000913	871607	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=150.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999034	major_base=A	major_cov=20/25	major_frequency=9.783e-01	minor_base=T	minor_cov=0/1	new_cov=20/25	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/26
RA	392	.	NC_000913	884298	0	G	A	consensus_score=59.4	frequency=1	major_base=A	major_cov=4/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/14
RA	393	.	NC_000913	895123	0	G	A	consensus_score=235.4	frequency=1	major_base=A	major_cov=41/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	394	.	NC_000913	896177	0	G	A	consensus_score=182.7	frequency=1	major_base=A	major_cov=25/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	395	.	NC_000913	910295	0	C	T	consensus_score=143.2	frequency=1	major_base=T	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	396	.	NC_000913	911117	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=115.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=10/24	major_frequency=9.714e-01	minor_base=T	minor_cov=0/1	new_cov=10/24	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/25
RA	397	.	NC_000913	918891	0	G	A	bias_e_value=3709480	bias_p_value=0.799172	consensus_score=104.3	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/18	major_frequency=9.688e-01	minor_base=C	minor_cov=1/0	new_cov=13/18	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	398	.	NC_000913	924859	0	T	C	bias_e_value=2207310	bias_p_value=0.475544	consensus_score=184.0	fisher_strand_p_value=0.212341	frequency=1	ks_quality_p_value=0.812103	major_base=C	major_cov=31/25	major_frequency=9.655e-01	minor_base=G	minor_cov=0/2	new_cov=31/25	polymorphism_frequency=9.655e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	399	.	NC_000913	930390	0	G	A	bias_e_value=3481740	bias_p_value=0.750107	consensus_score=155.0	fisher_strand_p_value=0.387755	frequency=1	ks_quality_p_value=0.986487	major_base=A	major_cov=30/18	major_frequency=9.796e-01	minor_base=G	minor_cov=0/1	new_cov=30/18	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/19
RA	400	.	NC_000913	935214	0	G	A	consensus_score=155.4	frequency=1	major_base=A	major_cov=21/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/24
RA	401	.	NC_000913	946875	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=134.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=12/28	major_frequency=9.756e-01	minor_base=G	minor_cov=0/1	new_cov=12/28	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=12/29
RA	402	.	NC_000913	957294	0	G	A	bias_e_value=2362810	bias_p_value=0.509045	consensus_score=91.1	fisher_strand_p_value=0.192118	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=11/16	major_frequency=9.310e-01	minor_base=C	minor_cov=2/0	new_cov=11/16	polymorphism_frequency=9.310e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	403	.	NC_000913	969254	0	G	A	consensus_score=136.6	frequency=1	major_base=A	major_cov=29/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/13
RA	404	.	NC_000913	975438	0	G	A	consensus_score=159.2	frequency=1	major_base=A	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	405	.	NC_000913	976458	0	G	A	bias_e_value=3902910	bias_p_value=0.840846	consensus_score=163.9	fisher_strand_p_value=0.491833	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/28	major_frequency=9.655e-01	minor_base=G	minor_cov=0/2	new_cov=28/28	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=29/30
RA	406	.	NC_000913	981576	0	G	A	consensus_score=134.1	frequency=1	major_base=A	major_cov=21/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/20
RA	407	.	NC_000913	987152	0	G	T	consensus_score=46.7	frequency=1	major_base=T	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	408	.	NC_000913	988841	0	G	A	consensus_score=148.4	frequency=1	major_base=A	major_cov=13/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/30
RA	409	.	NC_000913	996646	0	T	C	consensus_score=151.8	frequency=1	major_base=C	major_cov=22/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/22
RA	410	.	NC_000913	1001272	0	G	A	bias_e_value=3249190	bias_p_value=0.700006	consensus_score=109.1	fisher_strand_p_value=0.342857	frequency=1	ks_quality_p_value=0.973468	major_base=A	major_cov=23/11	major_frequency=9.714e-01	minor_base=T	minor_cov=0/1	new_cov=23/11	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/12
RA	411	.	NC_000913	1001463	0	G	A	bias_e_value=3447870	bias_p_value=0.742811	consensus_score=70.0	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=8/15	major_frequency=9.583e-01	minor_base=C	minor_cov=1/0	new_cov=8/15	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/15
RA	412	.	NC_000913	1013246	0	G	A	consensus_score=145.0	frequency=1	major_base=A	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	413	.	NC_000913	1015156	0	G	A	consensus_score=150.6	frequency=1	major_base=A	major_cov=22/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/22
RA	414	.	NC_000913	1016983	0	G	A	consensus_score=207.9	frequency=1	major_base=A	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	415	.	NC_000913	1019827	0	T	C	consensus_score=128.1	frequency=1	major_base=C	major_cov=14/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/24
RA	416	.	NC_000913	1026673	0	G	A	consensus_score=150.2	frequency=1	major_base=A	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	417	.	NC_000913	1036834	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=149.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/19	major_frequency=9.792e-01	minor_base=C	minor_cov=1/0	new_cov=28/19	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	418	.	NC_000913	1054126	0	G	A	consensus_score=169.2	frequency=1	major_base=A	major_cov=32/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/17
RA	419	.	NC_000913	1056263	0	G	A	consensus_score=132.8	frequency=1	major_base=A	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	420	.	NC_000913	1069858	0	G	A	consensus_score=277.0	frequency=1	major_base=A	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	421	.	NC_000913	1079999	0	G	A	consensus_score=105.5	frequency=1	major_base=A	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	422	.	NC_000913	1085802	0	G	A	consensus_score=144.6	frequency=1	major_base=A	major_cov=22/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/24
RA	423	.	NC_000913	1095879	0	G	A	consensus_score=93.1	frequency=1	major_base=A	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	424	.	NC_000913	1099700	0	G	A	consensus_score=164.8	frequency=1	major_base=A	major_cov=30/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/18
RA	425	.	NC_000913	1105328	0	G	A	consensus_score=119.7	frequency=1	major_base=A	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	426	.	NC_000913	1111994	0	G	A	consensus_score=177.9	frequency=1	major_base=A	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	427	.	NC_000913	1119585	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=103.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/16	major_frequency=9.375e-01	minor_base=C	minor_cov=1/1	new_cov=14/16	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	428	.	NC_000913	1120661	0	G	A	bias_e_value=3580720	bias_p_value=0.771433	consensus_score=118.4	fisher_strand_p_value=0.405405	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/14	major_frequency=9.730e-01	minor_base=T	minor_cov=0/1	new_cov=22/14	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/15
RA	429	.	NC_000913	1122452	0	G	A	consensus_score=147.7	frequency=1	major_base=A	major_cov=16/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/28
RA	430	.	NC_000913	1124889	0	G	A	consensus_score=170.0	frequency=1	major_base=A	major_cov=22/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/27
RA	431	.	NC_000913	1126492	0	G	A	consensus_score=160.1	frequency=1	major_base=A	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	432	.	NC_000913	1151298	0	G	A	bias_e_value=1961580	bias_p_value=0.422605	consensus_score=142.9	fisher_strand_p_value=0.143763	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/27	major_frequency=9.545e-01	minor_base=C	minor_cov=2/0	new_cov=15/27	polymorphism_frequency=9.545e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=18/27
RA	433	.	NC_000913	1169127	0	G	A	consensus_score=103.0	frequency=1	major_base=A	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	434	.	NC_000913	1175952	0	G	A	consensus_score=163.6	frequency=1	major_base=A	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	435	.	NC_000913	1193350	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=90.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=12/16	major_frequency=9.655e-01	minor_base=G	minor_cov=0/1	new_cov=12/16	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=12/17
RA	436	.	NC_000913	1196220	0	C	T	consensus_score=56.5	frequency=1	major_base=T	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	437	.	NC_000913	1196232	0	C	T	consensus_score=41.1	frequency=1	major_base=T	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	438	.	NC_000913	1196245	0	T	C	consensus_score=33.1	frequency=1	major_base=C	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	439	.	NC_000913	1196247	0	A	G	consensus_score=33.8	frequency=1	major_base=G	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	440	.	NC_000913	1196277	0	C	T	consensus_score=21.4	frequency=1	major_base=T	major_cov=3/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/8
RA	441	.	NC_000913	1196280	0	G	C	consensus_score=18.3	frequency=1	major_base=C	major_cov=3/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/8
RA	442	.	NC_000913	1196283	0	A	G	consensus_score=16.9	frequency=1	major_base=G	major_cov=3/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/8
RA	443	.	NC_000913	1196292	0	C	T	consensus_score=13.7	frequency=1	major_base=T	major_cov=1/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/8
RA	444	.	NC_000913	1196304	0	G	A	consensus_score=13.8	frequency=1	major_base=A	major_cov=1/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/8
RA	445	.	NC_000913	1196316	0	T	A	consensus_score=10.7	frequency=1	major_base=A	major_cov=1/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/7
RA	446	.	NC_000913	1196325	0	A	G	consensus_score=10.6	frequency=1	major_base=G	major_cov=1/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/7
RA	447	.	NC_000913	1212851	0	G	A	consensus_score=91.4	frequency=1	major_base=A	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	448	.	NC_000913	1214646	0	G	A	consensus_score=87.7	frequency=1	major_base=A	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	449	.	NC_000913	1223271	0	G	A	consensus_score=58.3	frequency=1	major_base=A	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	450	.	NC_000913	1253655	0	G	A	consensus_score=126.2	frequency=1	major_base=A	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	451	.	NC_000913	1290881	0	C	T	consensus_score=92.2	frequency=1	major_base=T	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	452	.	NC_000913	1310045	0	G	A	bias_e_value=4638220	bias_p_value=0.99926	consensus_score=63.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.961788	major_base=A	major_cov=9/12	major_frequency=9.545e-01	minor_base=G	minor_cov=0/1	new_cov=9/12	polymorphism_frequency=9.545e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/1	total_cov=9/13
RA	453	.	NC_000913	1337394	0	A	G	consensus_score=120.6	frequency=1	major_base=G	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	454	.	NC_000913	1353758	0	T	A	consensus_score=144.3	frequency=1	major_base=A	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	455	.	NC_000913	1401887	0	C	T	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=135.0	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/15	major_frequency=9.750e-01	minor_base=G	minor_cov=0/1	new_cov=24/15	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	456	.	NC_000913	1403108	0	C	T	consensus_score=159.0	frequency=1	major_base=T	major_cov=29/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/17
RA	457	.	NC_000913	1404682	0	C	T	consensus_score=87.6	frequency=1	major_base=T	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	458	.	NC_000913	1410605	0	C	T	consensus_score=133.1	frequency=1	major_base=T	major_cov=17/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/22
RA	459	.	NC_000913	1423272	0	C	T	bias_e_value=119363	bias_p_value=0.0257157	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.3	fisher_strand_p_value=0.235112	frequency=2.419e-01	ks_quality_p_value=0.0167285	major_base=C	major_cov=21/26	major_frequency=7.581e-01	minor_base=T	minor_cov=10/5	new_cov=10/5	polymorphism_frequency=2.419e-01	polymorphism_score=36.6	prediction=polymorphism	ref_cov=21/26	total_cov=31/31
RA	460	.	NC_000913	1423273	0	G	A	bias_e_value=547651	bias_p_value=0.117986	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.3	fisher_strand_p_value=0.141064	frequency=2.419e-01	ks_quality_p_value=0.178695	major_base=G	major_cov=20/27	major_frequency=7.581e-01	minor_base=A	minor_cov=10/5	new_cov=10/5	polymorphism_frequency=2.419e-01	polymorphism_score=32.3	prediction=polymorphism	ref_cov=20/27	total_cov=31/32
RA	461	.	NC_000913	1423283	0	A	C	bias_e_value=1060040	bias_p_value=0.228375	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.6	fisher_strand_p_value=0.138585	frequency=2.381e-01	ks_quality_p_value=0.431848	major_base=A	major_cov=20/28	major_frequency=7.619e-01	minor_base=C	minor_cov=10/5	new_cov=10/5	polymorphism_frequency=2.381e-01	polymorphism_score=44.3	prediction=polymorphism	ref_cov=20/28	total_cov=30/33
RA	462	.	NC_000913	1423284	0	A	C	bias_e_value=51459.8	bias_p_value=0.0110865	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.7	fisher_strand_p_value=0.138585	frequency=2.381e-01	ks_quality_p_value=0.0106387	major_base=A	major_cov=20/28	major_frequency=7.619e-01	minor_base=C	minor_cov=10/5	new_cov=10/5	polymorphism_frequency=2.381e-01	polymorphism_score=40.9	prediction=polymorphism	ref_cov=20/28	total_cov=30/33
RA	463	.	NC_000913	1423338	0	G	C	bias_e_value=1344710	bias_p_value=0.289704	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.3	fisher_strand_p_value=0.121407	frequency=4.068e-01	ks_quality_p_value=0.684066	major_base=G	major_cov=13/22	major_frequency=5.932e-01	minor_base=C	minor_cov=14/10	new_cov=14/10	polymorphism_frequency=4.068e-01	polymorphism_score=83.1	prediction=polymorphism	ref_cov=13/22	total_cov=28/32
RA	464	.	NC_000913	1423404	0	G	T	bias_e_value=700463	bias_p_value=0.150908	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.8	fisher_strand_p_value=0.275626	frequency=4.815e-01	ks_quality_p_value=0.125443	major_base=G	major_cov=11/17	major_frequency=5.185e-01	minor_base=T	minor_cov=15/11	new_cov=15/11	polymorphism_frequency=4.815e-01	polymorphism_score=75.9	prediction=polymorphism	ref_cov=11/17	total_cov=26/29
RA	465	.	NC_000913	1428963	0	G	T	bias_e_value=4198020	bias_p_value=0.904423	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.4	fisher_strand_p_value=0.764359	frequency=2.258e-01	ks_quality_p_value=0.779699	major_base=G	major_cov=24/24	major_frequency=7.742e-01	minor_base=T	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=2.258e-01	polymorphism_score=31.0	prediction=polymorphism	ref_cov=24/24	total_cov=32/30
RA	466	.	NC_000913	1428966	0	T	G	bias_e_value=1679200	bias_p_value=0.361767	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.0	fisher_strand_p_value=0.532092	frequency=2.167e-01	ks_quality_p_value=0.21443	major_base=T	major_cov=22/25	major_frequency=7.833e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=2.167e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=22/25	total_cov=32/30
RA	467	.	NC_000913	1428978	0	G	A	bias_e_value=3711290	bias_p_value=0.799562	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.2	fisher_strand_p_value=0.775684	frequency=2.388e-01	ks_quality_p_value=0.564627	major_base=G	major_cov=25/26	major_frequency=7.612e-01	minor_base=A	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=2.388e-01	polymorphism_score=36.2	prediction=polymorphism	ref_cov=25/26	total_cov=34/33
RA	468	.	NC_000913	1429021	0	T	A	bias_e_value=4634100	bias_p_value=0.998372	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.7	fisher_strand_p_value=1	frequency=3.281e-01	ks_quality_p_value=0.943486	major_base=T	major_cov=22/21	major_frequency=6.719e-01	minor_base=A	minor_cov=10/11	new_cov=10/11	polymorphism_frequency=3.281e-01	polymorphism_score=52.8	prediction=polymorphism	ref_cov=22/21	total_cov=33/32
RA	469	.	NC_000913	1429022	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.7	fisher_strand_p_value=1	frequency=3.175e-01	ks_quality_p_value=1	major_base=T	major_cov=22/21	major_frequency=6.825e-01	minor_base=A	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=3.175e-01	polymorphism_score=52.2	prediction=polymorphism	ref_cov=22/21	total_cov=33/32
RA	470	.	NC_000913	1429024	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.6	fisher_strand_p_value=1	frequency=3.538e-01	ks_quality_p_value=1	major_base=A	major_cov=21/21	major_frequency=6.462e-01	minor_base=C	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=3.538e-01	polymorphism_score=55.0	prediction=polymorphism	ref_cov=21/21	total_cov=33/32
RA	471	.	NC_000913	1429027	0	C	T	bias_e_value=4599240	bias_p_value=0.990863	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.7	fisher_strand_p_value=1	frequency=3.385e-01	ks_quality_p_value=0.867898	major_base=C	major_cov=22/21	major_frequency=6.615e-01	minor_base=T	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.385e-01	polymorphism_score=48.4	prediction=polymorphism	ref_cov=22/21	total_cov=33/32
RA	472	.	NC_000913	1429069	0	T	A	bias_e_value=4545610	bias_p_value=0.979309	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.9	fisher_strand_p_value=0.803595	frequency=4.308e-01	ks_quality_p_value=1	major_base=T	major_cov=18/19	major_frequency=5.692e-01	minor_base=A	minor_cov=15/13	new_cov=15/13	polymorphism_frequency=4.308e-01	polymorphism_score=68.0	prediction=polymorphism	ref_cov=18/19	total_cov=38/33
RA	473	.	NC_000913	1429072	0	A	C	bias_e_value=4291660	bias_p_value=0.924597	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.3	fisher_strand_p_value=0.811444	frequency=4.028e-01	ks_quality_p_value=0.785894	major_base=A	major_cov=24/19	major_frequency=5.972e-01	minor_base=C	minor_cov=15/14	new_cov=15/14	polymorphism_frequency=4.028e-01	polymorphism_score=77.3	prediction=polymorphism	ref_cov=24/19	total_cov=39/33
RA	474	.	NC_000913	1429111	0	A	C	bias_e_value=3033830	bias_p_value=0.653611	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.3	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.293758	major_base=C	major_cov=22/18	major_frequency=5.000e-01	minor_base=A	minor_cov=21/19	new_cov=22/18	polymorphism_frequency=5.000e-01	polymorphism_score=126.6	prediction=polymorphism	ref_cov=21/19	total_cov=43/37
RA	475	.	NC_000913	1429114	0	C	T	bias_e_value=4558630	bias_p_value=0.982114	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.1	fisher_strand_p_value=1	frequency=4.699e-01	ks_quality_p_value=0.816925	major_base=C	major_cov=24/20	major_frequency=5.301e-01	minor_base=T	minor_cov=21/18	new_cov=21/18	polymorphism_frequency=4.699e-01	polymorphism_score=98.9	prediction=polymorphism	ref_cov=24/20	total_cov=45/38
RA	476	.	NC_000913	1429126	0	A	C	bias_e_value=4268070	bias_p_value=0.919514	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.5	fisher_strand_p_value=0.679254	frequency=4.839e-01	ks_quality_p_value=0.922521	major_base=A	major_cov=28/20	major_frequency=5.161e-01	minor_base=C	minor_cov=24/21	new_cov=24/21	polymorphism_frequency=4.839e-01	polymorphism_score=129.5	prediction=polymorphism	ref_cov=28/20	total_cov=52/41
RA	477	.	NC_000913	1429128	0	A	G	bias_e_value=4147300	bias_p_value=0.893497	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.9	fisher_strand_p_value=0.679254	frequency=4.839e-01	ks_quality_p_value=0.847316	major_base=A	major_cov=28/20	major_frequency=5.161e-01	minor_base=G	minor_cov=24/21	new_cov=24/21	polymorphism_frequency=4.839e-01	polymorphism_score=119.0	prediction=polymorphism	ref_cov=28/20	total_cov=52/41
RA	478	.	NC_000913	1429160	0	C	G	bias_e_value=210208	bias_p_value=0.0452874	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.2	fisher_strand_p_value=1	frequency=4.516e-01	ks_quality_p_value=0.00772365	major_base=C	major_cov=28/23	major_frequency=5.484e-01	minor_base=G	minor_cov=23/19	new_cov=23/19	polymorphism_frequency=4.516e-01	polymorphism_score=158.2	prediction=polymorphism	ref_cov=28/23	total_cov=51/42
RA	479	.	NC_000913	1429162	0	G	A	bias_e_value=70321.2	bias_p_value=0.01515	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.2	fisher_strand_p_value=0.677904	frequency=4.615e-01	ks_quality_p_value=0.00312216	major_base=G	major_cov=29/20	major_frequency=5.385e-01	minor_base=A	minor_cov=23/19	new_cov=23/19	polymorphism_frequency=4.615e-01	polymorphism_score=119.7	prediction=polymorphism	ref_cov=29/20	total_cov=52/39
RA	480	.	NC_000913	1429164	0	C	G	bias_e_value=558971	bias_p_value=0.120425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.2	fisher_strand_p_value=0.677904	frequency=4.615e-01	ks_quality_p_value=0.0381653	major_base=C	major_cov=29/20	major_frequency=5.385e-01	minor_base=G	minor_cov=23/19	new_cov=23/19	polymorphism_frequency=4.615e-01	polymorphism_score=147.7	prediction=polymorphism	ref_cov=29/20	total_cov=52/39
RA	481	.	NC_000913	1429171	0	A	G	bias_e_value=3367650	bias_p_value=0.725528	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.1	fisher_strand_p_value=1	frequency=4.681e-01	ks_quality_p_value=0.357788	major_base=A	major_cov=29/21	major_frequency=5.319e-01	minor_base=G	minor_cov=25/19	new_cov=25/19	polymorphism_frequency=4.681e-01	polymorphism_score=139.5	prediction=polymorphism	ref_cov=29/21	total_cov=54/40
RA	482	.	NC_000913	1429204	0	C	T	bias_e_value=2065890	bias_p_value=0.445077	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.8	fisher_strand_p_value=1	frequency=4.725e-01	ks_quality_p_value=0.155594	major_base=C	major_cov=30/18	major_frequency=5.275e-01	minor_base=T	minor_cov=27/16	new_cov=27/16	polymorphism_frequency=4.725e-01	polymorphism_score=114.6	prediction=polymorphism	ref_cov=30/18	total_cov=57/35
RA	483	.	NC_000913	1429207	0	T	G	bias_e_value=12418.3	bias_p_value=0.00267541	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.6	fisher_strand_p_value=1	frequency=4.674e-01	ks_quality_p_value=0.000292847	major_base=T	major_cov=30/19	major_frequency=5.326e-01	minor_base=G	minor_cov=27/16	new_cov=27/16	polymorphism_frequency=4.674e-01	polymorphism_score=150.0	prediction=polymorphism	ref_cov=30/19	total_cov=57/35
RA	484	.	NC_000913	1429225	0	C	T	bias_e_value=9926.91	bias_p_value=0.00213866	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.9	fisher_strand_p_value=0.515913	frequency=4.457e-01	ks_quality_p_value=0.000441614	major_base=C	major_cov=31/20	major_frequency=5.543e-01	minor_base=T	minor_cov=28/13	new_cov=28/13	polymorphism_frequency=4.457e-01	polymorphism_score=122.6	prediction=polymorphism	ref_cov=31/20	total_cov=59/34
RA	485	.	NC_000913	1429228	0	T	C	bias_e_value=69875	bias_p_value=0.0150539	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.9	fisher_strand_p_value=0.512118	frequency=4.505e-01	ks_quality_p_value=0.00410242	major_base=T	major_cov=30/20	major_frequency=5.495e-01	minor_base=C	minor_cov=28/13	new_cov=28/13	polymorphism_frequency=4.505e-01	polymorphism_score=124.1	prediction=polymorphism	ref_cov=30/20	total_cov=58/33
RA	486	.	NC_000913	1429231	0	T	C	bias_e_value=9280.03	bias_p_value=0.0019993	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.7	fisher_strand_p_value=0.521556	frequency=4.409e-01	ks_quality_p_value=0.000405117	major_base=T	major_cov=32/20	major_frequency=5.591e-01	minor_base=C	minor_cov=28/13	new_cov=28/13	polymorphism_frequency=4.409e-01	polymorphism_score=133.9	prediction=polymorphism	ref_cov=32/20	total_cov=60/33
RA	487	.	NC_000913	1429235	0	T	C	bias_e_value=21105.4	bias_p_value=0.00454695	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.8	fisher_strand_p_value=0.655032	frequency=4.333e-01	ks_quality_p_value=0.000813039	major_base=T	major_cov=32/19	major_frequency=5.667e-01	minor_base=C	minor_cov=27/12	new_cov=27/12	polymorphism_frequency=4.333e-01	polymorphism_score=126.2	prediction=polymorphism	ref_cov=32/19	total_cov=60/32
RA	488	.	NC_000913	1429236	0	T	A	bias_e_value=48851.2	bias_p_value=0.0105245	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.1	fisher_strand_p_value=0.657484	frequency=4.494e-01	ks_quality_p_value=0.00211192	major_base=T	major_cov=32/17	major_frequency=5.506e-01	minor_base=A	minor_cov=28/12	new_cov=28/12	polymorphism_frequency=4.494e-01	polymorphism_score=137.6	prediction=polymorphism	ref_cov=32/17	total_cov=60/32
RA	489	.	NC_000913	1429240	0	G	T	bias_e_value=74280.6	bias_p_value=0.0160031	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.9	fisher_strand_p_value=0.508545	frequency=4.348e-01	ks_quality_p_value=0.00443574	major_base=G	major_cov=32/20	major_frequency=5.652e-01	minor_base=T	minor_cov=28/12	new_cov=28/12	polymorphism_frequency=4.348e-01	polymorphism_score=129.0	prediction=polymorphism	ref_cov=32/20	total_cov=60/32
RA	490	.	NC_000913	1429243	0	A	C	bias_e_value=148118	bias_p_value=0.0319106	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.2	fisher_strand_p_value=0.824378	frequency=4.505e-01	ks_quality_p_value=0.00616124	major_base=A	major_cov=32/18	major_frequency=5.495e-01	minor_base=C	minor_cov=28/13	new_cov=28/13	polymorphism_frequency=4.505e-01	polymorphism_score=144.4	prediction=polymorphism	ref_cov=32/18	total_cov=60/32
RA	491	.	NC_000913	1429246	0	A	T	bias_e_value=571447	bias_p_value=0.123113	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.9	fisher_strand_p_value=0.661992	frequency=4.457e-01	ks_quality_p_value=0.0401979	major_base=A	major_cov=32/19	major_frequency=5.543e-01	minor_base=T	minor_cov=28/13	new_cov=28/13	polymorphism_frequency=4.457e-01	polymorphism_score=131.5	prediction=polymorphism	ref_cov=32/19	total_cov=60/33
RA	492	.	NC_000913	1429249	0	C	T	bias_e_value=518875	bias_p_value=0.111787	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.3	fisher_strand_p_value=0.663833	frequency=4.362e-01	ks_quality_p_value=0.0354583	major_base=C	major_cov=33/20	major_frequency=5.638e-01	minor_base=T	minor_cov=28/13	new_cov=28/13	polymorphism_frequency=4.362e-01	polymorphism_score=118.0	prediction=polymorphism	ref_cov=33/20	total_cov=61/33
RA	493	.	NC_000913	1429252	0	G	A	bias_e_value=252135	bias_p_value=0.05432	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.5	fisher_strand_p_value=0.521771	frequency=4.316e-01	ks_quality_p_value=0.0184478	major_base=G	major_cov=33/21	major_frequency=5.684e-01	minor_base=A	minor_cov=28/13	new_cov=28/13	polymorphism_frequency=4.316e-01	polymorphism_score=110.0	prediction=polymorphism	ref_cov=33/21	total_cov=61/34
RA	494	.	NC_000913	1429255	0	G	A	bias_e_value=1539900	bias_p_value=0.331756	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.7	fisher_strand_p_value=0.521771	frequency=4.316e-01	ks_quality_p_value=0.192903	major_base=G	major_cov=33/21	major_frequency=5.684e-01	minor_base=A	minor_cov=28/13	new_cov=28/13	polymorphism_frequency=4.316e-01	polymorphism_score=113.9	prediction=polymorphism	ref_cov=33/21	total_cov=61/34
RA	495	.	NC_000913	1429258	0	A	G	bias_e_value=3778150	bias_p_value=0.813967	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.6	fisher_strand_p_value=0.520722	frequency=4.271e-01	ks_quality_p_value=0.875432	major_base=A	major_cov=33/22	major_frequency=5.729e-01	minor_base=G	minor_cov=28/13	new_cov=28/13	polymorphism_frequency=4.271e-01	polymorphism_score=117.6	prediction=polymorphism	ref_cov=33/22	total_cov=61/36
RA	496	.	NC_000913	1429261	0	T	C	bias_e_value=3059840	bias_p_value=0.659213	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.5	fisher_strand_p_value=0.398442	frequency=4.184e-01	ks_quality_p_value=0.748818	major_base=T	major_cov=33/24	major_frequency=5.816e-01	minor_base=C	minor_cov=28/13	new_cov=28/13	polymorphism_frequency=4.184e-01	polymorphism_score=117.7	prediction=polymorphism	ref_cov=33/24	total_cov=61/37
RA	497	.	NC_000913	1429273	0	T	C	bias_e_value=2907790	bias_p_value=0.626457	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.8	fisher_strand_p_value=0.407931	frequency=4.038e-01	ks_quality_p_value=0.667392	major_base=T	major_cov=37/25	major_frequency=5.962e-01	minor_base=C	minor_cov=29/13	new_cov=29/13	polymorphism_frequency=4.038e-01	polymorphism_score=127.5	prediction=polymorphism	ref_cov=37/25	total_cov=66/38
RA	498	.	NC_000913	1429291	0	T	A	bias_e_value=2786200	bias_p_value=0.60026	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.2	fisher_strand_p_value=0.68915	frequency=4.206e-01	ks_quality_p_value=0.366639	major_base=T	major_cov=37/25	major_frequency=5.794e-01	minor_base=A	minor_cov=29/16	new_cov=29/16	polymorphism_frequency=4.206e-01	polymorphism_score=152.0	prediction=polymorphism	ref_cov=37/25	total_cov=67/42
RA	499	.	NC_000913	1429297	0	C	A	bias_e_value=567161	bias_p_value=0.12219	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.7	fisher_strand_p_value=0.554479	frequency=4.144e-01	ks_quality_p_value=0.0475337	major_base=C	major_cov=38/27	major_frequency=5.856e-01	minor_base=A	minor_cov=30/16	new_cov=30/16	polymorphism_frequency=4.144e-01	polymorphism_score=139.6	prediction=polymorphism	ref_cov=38/27	total_cov=68/43
RA	500	.	NC_000913	1429300	0	T	G	bias_e_value=1357730	bias_p_value=0.292511	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.2	fisher_strand_p_value=0.552684	frequency=4.182e-01	ks_quality_p_value=0.152313	major_base=T	major_cov=37/27	major_frequency=5.818e-01	minor_base=G	minor_cov=30/16	new_cov=30/16	polymorphism_frequency=4.182e-01	polymorphism_score=138.9	prediction=polymorphism	ref_cov=37/27	total_cov=67/43
RA	501	.	NC_000913	1429319	0	G	T	bias_e_value=13189.1	bias_p_value=0.00284147	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.2	fisher_strand_p_value=1	frequency=4.495e-01	ks_quality_p_value=0.000313344	major_base=G	major_cov=37/23	major_frequency=5.505e-01	minor_base=T	minor_cov=30/19	new_cov=30/19	polymorphism_frequency=4.495e-01	polymorphism_score=155.2	prediction=polymorphism	ref_cov=37/23	total_cov=67/42
RA	502	.	NC_000913	1429345	0	T	G	bias_e_value=4625080	bias_p_value=0.99643	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.0	fisher_strand_p_value=1	frequency=4.522e-01	ks_quality_p_value=0.916697	major_base=T	major_cov=38/25	major_frequency=5.478e-01	minor_base=G	minor_cov=31/21	new_cov=31/21	polymorphism_frequency=4.522e-01	polymorphism_score=132.3	prediction=polymorphism	ref_cov=38/25	total_cov=70/46
RA	503	.	NC_000913	1429353	0	C	T	bias_e_value=4567630	bias_p_value=0.984053	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.2	fisher_strand_p_value=0.84814	frequency=4.298e-01	ks_quality_p_value=0.974851	major_base=C	major_cov=39/26	major_frequency=5.702e-01	minor_base=T	minor_cov=28/21	new_cov=28/21	polymorphism_frequency=4.298e-01	polymorphism_score=128.5	prediction=polymorphism	ref_cov=39/26	total_cov=68/47
RA	504	.	NC_000913	1429354	0	A	G	bias_e_value=4097690	bias_p_value=0.882809	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.1	fisher_strand_p_value=1	frequency=4.261e-01	ks_quality_p_value=0.556757	major_base=A	major_cov=39/27	major_frequency=5.739e-01	minor_base=G	minor_cov=29/20	new_cov=29/20	polymorphism_frequency=4.261e-01	polymorphism_score=134.3	prediction=polymorphism	ref_cov=39/27	total_cov=68/47
RA	505	.	NC_000913	1429360	0	C	T	bias_e_value=4344310	bias_p_value=0.93594	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.9	fisher_strand_p_value=0.850872	frequency=4.407e-01	ks_quality_p_value=0.780518	major_base=C	major_cov=39/27	major_frequency=5.593e-01	minor_base=T	minor_cov=32/20	new_cov=32/20	polymorphism_frequency=4.407e-01	polymorphism_score=138.7	prediction=polymorphism	ref_cov=39/27	total_cov=71/47
RA	506	.	NC_000913	1429364	0	T	C	bias_e_value=2047200	bias_p_value=0.441051	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.2	fisher_strand_p_value=0.577339	frequency=4.407e-01	ks_quality_p_value=0.265767	major_base=T	major_cov=37/29	major_frequency=5.593e-01	minor_base=C	minor_cov=32/20	new_cov=32/20	polymorphism_frequency=4.407e-01	polymorphism_score=157.2	prediction=polymorphism	ref_cov=37/29	total_cov=69/50
RA	507	.	NC_000913	1429404	0	C	T	bias_e_value=1882770	bias_p_value=0.405626	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.6	fisher_strand_p_value=0.447282	frequency=4.138e-01	ks_quality_p_value=0.302148	major_base=C	major_cov=37/31	major_frequency=5.862e-01	minor_base=T	minor_cov=30/18	new_cov=30/18	polymorphism_frequency=4.138e-01	polymorphism_score=131.4	prediction=polymorphism	ref_cov=37/31	total_cov=68/49
RA	508	.	NC_000913	1429416	0	A	G	bias_e_value=1938730	bias_p_value=0.417682	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.2	fisher_strand_p_value=0.444467	frequency=4.087e-01	ks_quality_p_value=0.317766	major_base=A	major_cov=36/32	major_frequency=5.913e-01	minor_base=G	minor_cov=29/18	new_cov=29/18	polymorphism_frequency=4.087e-01	polymorphism_score=146.2	prediction=polymorphism	ref_cov=36/32	total_cov=65/50
RA	509	.	NC_000913	1429417	0	C	T	bias_e_value=3409660	bias_p_value=0.734579	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.3	fisher_strand_p_value=0.444467	frequency=4.087e-01	ks_quality_p_value=0.825037	major_base=C	major_cov=36/32	major_frequency=5.913e-01	minor_base=T	minor_cov=29/18	new_cov=29/18	polymorphism_frequency=4.087e-01	polymorphism_score=124.6	prediction=polymorphism	ref_cov=36/32	total_cov=65/50
RA	510	.	NC_000913	1429425	0	C	A	bias_e_value=176597	bias_p_value=0.0380462	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.3	fisher_strand_p_value=0.447265	frequency=4.052e-01	ks_quality_p_value=0.0140075	major_base=C	major_cov=37/32	major_frequency=5.948e-01	minor_base=A	minor_cov=29/18	new_cov=29/18	polymorphism_frequency=4.052e-01	polymorphism_score=134.0	prediction=polymorphism	ref_cov=37/32	total_cov=66/50
RA	511	.	NC_000913	1429435	0	G	A	bias_e_value=4164840	bias_p_value=0.897276	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.5	fisher_strand_p_value=0.697081	frequency=4.091e-01	ks_quality_p_value=0.835569	major_base=G	major_cov=36/29	major_frequency=5.909e-01	minor_base=A	minor_cov=27/18	new_cov=27/18	polymorphism_frequency=4.091e-01	polymorphism_score=124.2	prediction=polymorphism	ref_cov=36/29	total_cov=63/48
RA	512	.	NC_000913	1429442	0	A	G	bias_e_value=1424260	bias_p_value=0.306842	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.5	fisher_strand_p_value=0.568089	frequency=3.644e-01	ks_quality_p_value=0.158519	major_base=A	major_cov=41/34	major_frequency=6.356e-01	minor_base=G	minor_cov=26/17	new_cov=26/17	polymorphism_frequency=3.644e-01	polymorphism_score=120.3	prediction=polymorphism	ref_cov=41/34	total_cov=67/51
RA	513	.	NC_000913	1429444	0	T	C	bias_e_value=194794	bias_p_value=0.0419664	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.9	fisher_strand_p_value=0.441817	frequency=3.793e-01	ks_quality_p_value=0.0159503	major_base=T	major_cov=38/34	major_frequency=6.207e-01	minor_base=C	minor_cov=27/17	new_cov=27/17	polymorphism_frequency=3.793e-01	polymorphism_score=124.6	prediction=polymorphism	ref_cov=38/34	total_cov=67/52
RA	514	.	NC_000913	1429453	0	C	T	bias_e_value=1853480	bias_p_value=0.399315	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.1	fisher_strand_p_value=1	frequency=3.276e-01	ks_quality_p_value=0.132011	major_base=C	major_cov=43/35	major_frequency=6.724e-01	minor_base=T	minor_cov=21/17	new_cov=21/17	polymorphism_frequency=3.276e-01	polymorphism_score=97.2	prediction=polymorphism	ref_cov=43/35	total_cov=65/52
RA	515	.	NC_000913	1429454	0	A	G	bias_e_value=3474670	bias_p_value=0.748585	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.9	fisher_strand_p_value=1	frequency=3.362e-01	ks_quality_p_value=0.380935	major_base=A	major_cov=43/34	major_frequency=6.638e-01	minor_base=G	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.362e-01	polymorphism_score=106.0	prediction=polymorphism	ref_cov=43/34	total_cov=65/52
RA	516	.	NC_000913	1429462	0	C	T	bias_e_value=1903390	bias_p_value=0.410068	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.7	fisher_strand_p_value=1	frequency=3.362e-01	ks_quality_p_value=0.137374	major_base=C	major_cov=42/35	major_frequency=6.638e-01	minor_base=T	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.362e-01	polymorphism_score=107.4	prediction=polymorphism	ref_cov=42/35	total_cov=65/52
RA	517	.	NC_000913	1429463	0	C	G	bias_e_value=1362290	bias_p_value=0.293492	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.1	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.0845776	major_base=C	major_cov=43/35	major_frequency=6.667e-01	minor_base=G	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.333e-01	polymorphism_score=142.4	prediction=polymorphism	ref_cov=43/35	total_cov=65/52
RA	518	.	NC_000913	1429464	0	G	C	bias_e_value=167858	bias_p_value=0.0361635	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.0	fisher_strand_p_value=1	frequency=3.305e-01	ks_quality_p_value=0.0058961	major_base=G	major_cov=44/35	major_frequency=6.695e-01	minor_base=C	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.305e-01	polymorphism_score=136.2	prediction=polymorphism	ref_cov=44/35	total_cov=67/52
RA	519	.	NC_000913	1429466	0	G	C	bias_e_value=28716.3	bias_p_value=0.00618666	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.3	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.000755573	major_base=G	major_cov=44/34	major_frequency=6.667e-01	minor_base=C	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.333e-01	polymorphism_score=140.4	prediction=polymorphism	ref_cov=44/34	total_cov=66/52
RA	520	.	NC_000913	1429470	0	C	T	bias_e_value=4639020	bias_p_value=0.999434	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.7	fisher_strand_p_value=1	frequency=3.362e-01	ks_quality_p_value=0.966532	major_base=C	major_cov=43/34	major_frequency=6.638e-01	minor_base=T	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.362e-01	polymorphism_score=100.3	prediction=polymorphism	ref_cov=43/34	total_cov=65/51
RA	521	.	NC_000913	1429471	0	G	C	bias_e_value=3866930	bias_p_value=0.833092	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.6	fisher_strand_p_value=1	frequency=3.362e-01	ks_quality_p_value=0.481074	major_base=G	major_cov=43/34	major_frequency=6.638e-01	minor_base=C	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.362e-01	polymorphism_score=136.5	prediction=polymorphism	ref_cov=43/34	total_cov=65/51
RA	522	.	NC_000913	1429474	0	A	G	bias_e_value=4308200	bias_p_value=0.928161	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.7	fisher_strand_p_value=1	frequency=3.362e-01	ks_quality_p_value=0.645742	major_base=A	major_cov=44/33	major_frequency=6.638e-01	minor_base=G	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.362e-01	polymorphism_score=104.7	prediction=polymorphism	ref_cov=44/33	total_cov=66/51
RA	523	.	NC_000913	1429475	0	A	G	bias_e_value=4167750	bias_p_value=0.897902	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.2	fisher_strand_p_value=1	frequency=3.304e-01	ks_quality_p_value=0.583619	major_base=A	major_cov=44/33	major_frequency=6.696e-01	minor_base=G	minor_cov=21/17	new_cov=21/17	polymorphism_frequency=3.304e-01	polymorphism_score=105.0	prediction=polymorphism	ref_cov=44/33	total_cov=66/51
RA	524	.	NC_000913	1429479	0	A	T	bias_e_value=1670140	bias_p_value=0.359816	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.1	fisher_strand_p_value=1	frequency=3.362e-01	ks_quality_p_value=0.1132	major_base=A	major_cov=43/34	major_frequency=6.638e-01	minor_base=T	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.362e-01	polymorphism_score=122.7	prediction=polymorphism	ref_cov=43/34	total_cov=65/51
RA	525	.	NC_000913	1429482	0	C	T	bias_e_value=2123930	bias_p_value=0.457581	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.0	fisher_strand_p_value=1	frequency=3.248e-01	ks_quality_p_value=0.162393	major_base=C	major_cov=44/35	major_frequency=6.752e-01	minor_base=T	minor_cov=21/17	new_cov=21/17	polymorphism_frequency=3.248e-01	polymorphism_score=94.2	prediction=polymorphism	ref_cov=44/35	total_cov=66/52
RA	526	.	NC_000913	1429484	0	G	A	bias_e_value=443601	bias_p_value=0.0955697	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.1	fisher_strand_p_value=1	frequency=3.305e-01	ks_quality_p_value=0.0193203	major_base=G	major_cov=44/35	major_frequency=6.695e-01	minor_base=A	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.305e-01	polymorphism_score=103.6	prediction=polymorphism	ref_cov=44/35	total_cov=66/52
RA	527	.	NC_000913	1429492	0	T	A	bias_e_value=761039	bias_p_value=0.163959	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.2	fisher_strand_p_value=1	frequency=3.391e-01	ks_quality_p_value=0.0385185	major_base=T	major_cov=44/32	major_frequency=6.609e-01	minor_base=A	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.391e-01	polymorphism_score=127.3	prediction=polymorphism	ref_cov=44/32	total_cov=67/51
RA	528	.	NC_000913	1429493	0	G	A	bias_e_value=2270970	bias_p_value=0.489259	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.4	fisher_strand_p_value=1	frequency=3.305e-01	ks_quality_p_value=0.180347	major_base=G	major_cov=45/34	major_frequency=6.695e-01	minor_base=A	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.305e-01	polymorphism_score=104.4	prediction=polymorphism	ref_cov=45/34	total_cov=67/51
RA	529	.	NC_000913	1429495	0	G	T	bias_e_value=1860840	bias_p_value=0.4009	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.4	fisher_strand_p_value=1	frequency=3.362e-01	ks_quality_p_value=0.132795	major_base=G	major_cov=44/33	major_frequency=6.638e-01	minor_base=T	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.362e-01	polymorphism_score=122.5	prediction=polymorphism	ref_cov=44/33	total_cov=66/50
RA	530	.	NC_000913	1429510	0	A	C	bias_e_value=4372320	bias_p_value=0.941975	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.4	fisher_strand_p_value=0.707009	frequency=3.750e-01	ks_quality_p_value=0.960789	major_base=A	major_cov=43/32	major_frequency=6.250e-01	minor_base=C	minor_cov=24/21	new_cov=24/21	polymorphism_frequency=3.750e-01	polymorphism_score=109.5	prediction=polymorphism	ref_cov=43/32	total_cov=67/53
RA	531	.	NC_000913	1429522	0	A	C	bias_e_value=3871620	bias_p_value=0.834105	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.7	fisher_strand_p_value=0.849166	frequency=3.913e-01	ks_quality_p_value=0.568158	major_base=A	major_cov=39/31	major_frequency=6.087e-01	minor_base=C	minor_cov=24/21	new_cov=24/21	polymorphism_frequency=3.913e-01	polymorphism_score=118.0	prediction=polymorphism	ref_cov=39/31	total_cov=63/53
RA	532	.	NC_000913	1429534	0	C	T	bias_e_value=2190900	bias_p_value=0.47201	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.4	fisher_strand_p_value=0.699376	frequency=3.805e-01	ks_quality_p_value=0.243701	major_base=C	major_cov=39/31	major_frequency=6.195e-01	minor_base=T	minor_cov=22/21	new_cov=22/21	polymorphism_frequency=3.805e-01	polymorphism_score=104.5	prediction=polymorphism	ref_cov=39/31	total_cov=61/53
RA	533	.	NC_000913	1429537	0	G	A	bias_e_value=1467510	bias_p_value=0.316162	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.6	fisher_strand_p_value=0.561784	frequency=3.818e-01	ks_quality_p_value=0.167251	major_base=G	major_cov=38/30	major_frequency=6.182e-01	minor_base=A	minor_cov=21/21	new_cov=21/21	polymorphism_frequency=3.818e-01	polymorphism_score=106.2	prediction=polymorphism	ref_cov=38/30	total_cov=59/51
RA	534	.	NC_000913	1429543	0	G	A	bias_e_value=315982	bias_p_value=0.0680754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.9	fisher_strand_p_value=0.43077	frequency=3.784e-01	ks_quality_p_value=0.0294424	major_base=G	major_cov=41/28	major_frequency=6.216e-01	minor_base=A	minor_cov=21/21	new_cov=21/21	polymorphism_frequency=3.784e-01	polymorphism_score=108.1	prediction=polymorphism	ref_cov=41/28	total_cov=62/50
RA	535	.	NC_000913	1429550	0	T	G	bias_e_value=1953640	bias_p_value=0.420894	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.1	fisher_strand_p_value=0.562463	frequency=3.684e-01	ks_quality_p_value=0.254031	major_base=T	major_cov=42/30	major_frequency=6.316e-01	minor_base=G	minor_cov=22/20	new_cov=22/20	polymorphism_frequency=3.684e-01	polymorphism_score=115.9	prediction=polymorphism	ref_cov=42/30	total_cov=64/50
RA	536	.	NC_000913	1429551	0	C	A	bias_e_value=3207950	bias_p_value=0.691123	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.7	fisher_strand_p_value=0.439452	frequency=3.596e-01	ks_quality_p_value=0.741271	major_base=C	major_cov=43/30	major_frequency=6.404e-01	minor_base=A	minor_cov=21/20	new_cov=21/20	polymorphism_frequency=3.596e-01	polymorphism_score=109.0	prediction=polymorphism	ref_cov=43/30	total_cov=64/50
RA	537	.	NC_000913	1429558	0	T	C	bias_e_value=1585900	bias_p_value=0.341667	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.7	fisher_strand_p_value=0.698876	frequency=3.590e-01	ks_quality_p_value=0.150253	major_base=T	major_cov=43/32	major_frequency=6.410e-01	minor_base=C	minor_cov=22/20	new_cov=22/20	polymorphism_frequency=3.590e-01	polymorphism_score=109.9	prediction=polymorphism	ref_cov=43/32	total_cov=65/52
RA	538	.	NC_000913	1429562	0	A	G	bias_e_value=3730670	bias_p_value=0.803737	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.6	fisher_strand_p_value=0.702362	frequency=3.652e-01	ks_quality_p_value=0.630821	major_base=A	major_cov=41/32	major_frequency=6.348e-01	minor_base=G	minor_cov=22/20	new_cov=22/20	polymorphism_frequency=3.652e-01	polymorphism_score=117.9	prediction=polymorphism	ref_cov=41/32	total_cov=64/52
RA	539	.	NC_000913	1429569	0	G	A	bias_e_value=4564170	bias_p_value=0.983306	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.1	fisher_strand_p_value=0.847792	frequency=3.750e-01	ks_quality_p_value=0.970677	major_base=G	major_cov=38/32	major_frequency=6.250e-01	minor_base=A	minor_cov=22/20	new_cov=22/20	polymorphism_frequency=3.750e-01	polymorphism_score=105.2	prediction=polymorphism	ref_cov=38/32	total_cov=60/53
RA	540	.	NC_000913	1429571	0	A	G	bias_e_value=4198180	bias_p_value=0.904457	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.8	fisher_strand_p_value=0.69579	frequency=3.694e-01	ks_quality_p_value=0.856631	major_base=A	major_cov=39/31	major_frequency=6.306e-01	minor_base=G	minor_cov=21/20	new_cov=21/20	polymorphism_frequency=3.694e-01	polymorphism_score=104.4	prediction=polymorphism	ref_cov=39/31	total_cov=60/51
RA	541	.	NC_000913	1429580	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.2	fisher_strand_p_value=1	frequency=4.074e-01	ks_quality_p_value=1	major_base=A	major_cov=34/30	major_frequency=5.926e-01	minor_base=G	minor_cov=24/20	new_cov=24/20	polymorphism_frequency=4.074e-01	polymorphism_score=117.0	prediction=polymorphism	ref_cov=34/30	total_cov=59/51
RA	542	.	NC_000913	1429597	0	A	G	bias_e_value=4153200	bias_p_value=0.894768	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.6	fisher_strand_p_value=0.687511	frequency=3.426e-01	ks_quality_p_value=0.8405	major_base=A	major_cov=38/33	major_frequency=6.574e-01	minor_base=G	minor_cov=18/19	new_cov=18/19	polymorphism_frequency=3.426e-01	polymorphism_score=98.9	prediction=polymorphism	ref_cov=38/33	total_cov=56/53
RA	543	.	NC_000913	1429598	0	T	G	bias_e_value=4196640	bias_p_value=0.904126	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.7	fisher_strand_p_value=0.690078	frequency=3.458e-01	ks_quality_p_value=0.862796	major_base=T	major_cov=37/33	major_frequency=6.542e-01	minor_base=G	minor_cov=18/19	new_cov=18/19	polymorphism_frequency=3.458e-01	polymorphism_score=88.7	prediction=polymorphism	ref_cov=37/33	total_cov=56/53
RA	544	.	NC_000913	1429599	0	C	A	bias_e_value=3434700	bias_p_value=0.739974	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.5	fisher_strand_p_value=0.691662	frequency=3.394e-01	ks_quality_p_value=0.538006	major_base=C	major_cov=38/34	major_frequency=6.606e-01	minor_base=A	minor_cov=18/19	new_cov=18/19	polymorphism_frequency=3.394e-01	polymorphism_score=99.4	prediction=polymorphism	ref_cov=38/34	total_cov=56/53
RA	545	.	NC_000913	1429609	0	T	C	bias_e_value=3107060	bias_p_value=0.669386	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.7	fisher_strand_p_value=0.539507	frequency=3.462e-01	ks_quality_p_value=0.568799	major_base=T	major_cov=37/31	major_frequency=6.538e-01	minor_base=C	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=3.462e-01	polymorphism_score=89.8	prediction=polymorphism	ref_cov=37/31	total_cov=54/50
RA	546	.	NC_000913	1429612	0	C	A	bias_e_value=4382790	bias_p_value=0.94423	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.9	fisher_strand_p_value=0.685185	frequency=3.462e-01	ks_quality_p_value=1	major_base=C	major_cov=37/31	major_frequency=6.538e-01	minor_base=A	minor_cov=18/18	new_cov=18/18	polymorphism_frequency=3.462e-01	polymorphism_score=84.7	prediction=polymorphism	ref_cov=37/31	total_cov=55/50
RA	547	.	NC_000913	1429615	0	T	C	bias_e_value=2490900	bias_p_value=0.536641	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.1	fisher_strand_p_value=0.408942	frequency=3.462e-01	ks_quality_p_value=0.511806	major_base=T	major_cov=39/29	major_frequency=6.538e-01	minor_base=C	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=3.462e-01	polymorphism_score=88.2	prediction=polymorphism	ref_cov=39/29	total_cov=56/48
RA	548	.	NC_000913	1429632	0	G	A	bias_e_value=784106	bias_p_value=0.168928	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.7	fisher_strand_p_value=0.0822109	frequency=3.964e-01	ks_quality_p_value=0.487208	major_base=G	major_cov=42/25	major_frequency=6.036e-01	minor_base=A	minor_cov=20/24	new_cov=20/24	polymorphism_frequency=3.964e-01	polymorphism_score=112.8	prediction=polymorphism	ref_cov=42/25	total_cov=62/52
RA	549	.	NC_000913	1429682	0	T	G	bias_e_value=1585910	bias_p_value=0.34167	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.2	fisher_strand_p_value=0.11683	frequency=4.444e-01	ks_quality_p_value=0.898825	major_base=T	major_cov=47/28	major_frequency=5.556e-01	minor_base=G	minor_cov=29/31	new_cov=29/31	polymorphism_frequency=4.444e-01	polymorphism_score=164.5	prediction=polymorphism	ref_cov=47/28	total_cov=77/59
RA	550	.	NC_000913	1429692	0	T	A	bias_e_value=408294	bias_p_value=0.0879631	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.5	fisher_strand_p_value=0.0236484	frequency=4.667e-01	ks_quality_p_value=0.736519	major_base=T	major_cov=47/25	major_frequency=5.333e-01	minor_base=A	minor_cov=28/35	new_cov=28/35	polymorphism_frequency=4.667e-01	polymorphism_score=214.7	prediction=polymorphism	ref_cov=47/25	total_cov=76/61
RA	551	.	NC_000913	1429702	0	A	C	bias_e_value=1085510	bias_p_value=0.233863	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.2	fisher_strand_p_value=0.0847461	frequency=4.926e-01	ks_quality_p_value=0.729324	major_base=A	major_cov=43/26	major_frequency=5.074e-01	minor_base=C	minor_cov=31/36	new_cov=31/36	polymorphism_frequency=4.926e-01	polymorphism_score=197.3	prediction=polymorphism	ref_cov=43/26	total_cov=74/62
RA	552	.	NC_000913	1429708	0	A	G	bias_e_value=1134830	bias_p_value=0.244488	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.8	fisher_strand_p_value=0.0873712	frequency=4.783e-01	ks_quality_p_value=0.751583	major_base=A	major_cov=44/28	major_frequency=5.217e-01	minor_base=G	minor_cov=30/36	new_cov=30/36	polymorphism_frequency=4.783e-01	polymorphism_score=198.5	prediction=polymorphism	ref_cov=44/28	total_cov=74/65
RA	553	.	NC_000913	1429714	0	A	C	bias_e_value=1690220	bias_p_value=0.364142	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.2	fisher_strand_p_value=0.179036	frequency=4.894e-01	ks_quality_p_value=0.643409	major_base=A	major_cov=42/30	major_frequency=5.106e-01	minor_base=C	minor_cov=32/37	new_cov=32/37	polymorphism_frequency=4.894e-01	polymorphism_score=218.1	prediction=polymorphism	ref_cov=42/30	total_cov=74/67
RA	554	.	NC_000913	1429724	0	A	G	bias_e_value=392385	bias_p_value=0.0845357	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.1	fisher_strand_p_value=0.172804	frequency=5.036e-01	ks_quality_p_value=0.0959259	major_base=G	major_cov=31/38	major_frequency=5.036e-01	minor_base=A	minor_cov=39/29	new_cov=31/38	polymorphism_frequency=5.036e-01	polymorphism_score=206.5	prediction=polymorphism	ref_cov=39/29	total_cov=73/70
RA	555	.	NC_000913	1429732	0	G	A	bias_e_value=1821340	bias_p_value=0.392391	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.0	fisher_strand_p_value=0.184746	frequency=5.070e-01	ks_quality_p_value=0.696162	major_base=A	major_cov=33/39	major_frequency=5.070e-01	minor_base=G	minor_cov=40/30	new_cov=33/39	polymorphism_frequency=5.070e-01	polymorphism_score=198.7	prediction=polymorphism	ref_cov=40/30	total_cov=73/69
RA	556	.	NC_000913	1429735	0	A	G	bias_e_value=1840100	bias_p_value=0.396433	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.1	fisher_strand_p_value=0.130591	frequency=4.965e-01	ks_quality_p_value=1	major_base=A	major_cov=41/30	major_frequency=5.035e-01	minor_base=G	minor_cov=31/39	new_cov=31/39	polymorphism_frequency=4.965e-01	polymorphism_score=202.9	prediction=polymorphism	ref_cov=41/30	total_cov=72/69
RA	557	.	NC_000913	1429741	0	A	G	bias_e_value=1814710	bias_p_value=0.390962	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.0	fisher_strand_p_value=0.169819	frequency=4.815e-01	ks_quality_p_value=0.753253	major_base=A	major_cov=40/30	major_frequency=5.185e-01	minor_base=G	minor_cov=29/36	new_cov=29/36	polymorphism_frequency=4.815e-01	polymorphism_score=201.1	prediction=polymorphism	ref_cov=40/30	total_cov=71/66
RA	558	.	NC_000913	1429744	0	T	C	bias_e_value=1616570	bias_p_value=0.348274	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.0	fisher_strand_p_value=0.236676	frequency=4.820e-01	ks_quality_p_value=0.456142	major_base=T	major_cov=41/31	major_frequency=5.180e-01	minor_base=C	minor_cov=31/36	new_cov=31/36	polymorphism_frequency=4.820e-01	polymorphism_score=200.1	prediction=polymorphism	ref_cov=41/31	total_cov=72/67
RA	559	.	NC_000913	1429747	0	G	C	bias_e_value=327525	bias_p_value=0.0705622	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.8	fisher_strand_p_value=0.235752	frequency=4.714e-01	ks_quality_p_value=0.0562252	major_base=G	major_cov=42/32	major_frequency=5.286e-01	minor_base=C	minor_cov=30/36	new_cov=30/36	polymorphism_frequency=4.714e-01	polymorphism_score=254.5	prediction=polymorphism	ref_cov=42/32	total_cov=72/68
RA	560	.	NC_000913	1429750	0	C	T	bias_e_value=67.6289	bias_p_value=1.457e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.7	fisher_strand_p_value=0.235752	frequency=4.714e-01	ks_quality_p_value=4.16643e-06	major_base=C	major_cov=42/32	major_frequency=5.286e-01	minor_base=T	minor_cov=30/36	new_cov=30/36	polymorphism_frequency=4.714e-01	polymorphism_score=188.1	prediction=polymorphism	ref_cov=42/32	total_cov=72/68
RA	561	.	NC_000913	1429753	0	G	A	bias_e_value=59978.8	bias_p_value=0.0129219	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.3	fisher_strand_p_value=0.236467	frequency=4.748e-01	ks_quality_p_value=0.00744233	major_base=G	major_cov=41/32	major_frequency=5.252e-01	minor_base=A	minor_cov=30/36	new_cov=30/36	polymorphism_frequency=4.748e-01	polymorphism_score=196.8	prediction=polymorphism	ref_cov=41/32	total_cov=71/68
RA	562	.	NC_000913	1429756	0	C	A	bias_e_value=1805.01	bias_p_value=0.000388872	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.5	fisher_strand_p_value=0.393898	frequency=4.710e-01	ks_quality_p_value=8.75613e-05	major_base=C	major_cov=40/33	major_frequency=5.290e-01	minor_base=A	minor_cov=30/35	new_cov=30/35	polymorphism_frequency=4.710e-01	polymorphism_score=215.5	prediction=polymorphism	ref_cov=40/33	total_cov=70/68
RA	563	.	NC_000913	1429759	0	G	A	bias_e_value=171989	bias_p_value=0.0370534	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.0	fisher_strand_p_value=0.306521	frequency=4.783e-01	ks_quality_p_value=0.0198027	major_base=G	major_cov=40/32	major_frequency=5.217e-01	minor_base=A	minor_cov=30/36	new_cov=30/36	polymorphism_frequency=4.783e-01	polymorphism_score=198.2	prediction=polymorphism	ref_cov=40/32	total_cov=70/68
RA	564	.	NC_000913	1429767	0	C	T	bias_e_value=152791	bias_p_value=0.0329174	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.2	fisher_strand_p_value=0.306292	frequency=4.599e-01	ks_quality_p_value=0.0172074	major_base=C	major_cov=41/33	major_frequency=5.401e-01	minor_base=T	minor_cov=29/34	new_cov=29/34	polymorphism_frequency=4.599e-01	polymorphism_score=181.0	prediction=polymorphism	ref_cov=41/33	total_cov=70/68
RA	565	.	NC_000913	1429780	0	A	G	bias_e_value=24669	bias_p_value=0.00531471	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.3	fisher_strand_p_value=0.382986	frequency=4.222e-01	ks_quality_p_value=0.00165976	major_base=A	major_cov=45/33	major_frequency=5.778e-01	minor_base=G	minor_cov=28/29	new_cov=28/29	polymorphism_frequency=4.222e-01	polymorphism_score=175.6	prediction=polymorphism	ref_cov=45/33	total_cov=74/62
RA	566	.	NC_000913	1429783	0	G	A	bias_e_value=52368.7	bias_p_value=0.0112823	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.0	fisher_strand_p_value=0.490159	frequency=4.101e-01	ks_quality_p_value=0.0030693	major_base=G	major_cov=46/36	major_frequency=5.899e-01	minor_base=A	minor_cov=28/29	new_cov=28/29	polymorphism_frequency=4.101e-01	polymorphism_score=165.0	prediction=polymorphism	ref_cov=46/36	total_cov=74/65
RA	567	.	NC_000913	1429816	0	C	T	bias_e_value=3267390	bias_p_value=0.703929	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.0	fisher_strand_p_value=0.711598	frequency=3.571e-01	ks_quality_p_value=0.474077	major_base=C	major_cov=43/38	major_frequency=6.429e-01	minor_base=T	minor_cov=22/23	new_cov=22/23	polymorphism_frequency=3.571e-01	polymorphism_score=117.8	prediction=polymorphism	ref_cov=43/38	total_cov=66/61
RA	568	.	NC_000913	1429820	0	A	G	bias_e_value=291613	bias_p_value=0.0628252	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.9	fisher_strand_p_value=0.261732	frequency=3.154e-01	ks_quality_p_value=0.0439151	major_base=A	major_cov=51/38	major_frequency=6.846e-01	minor_base=G	minor_cov=19/22	new_cov=19/22	polymorphism_frequency=3.154e-01	polymorphism_score=116.0	prediction=polymorphism	ref_cov=51/38	total_cov=70/60
RA	569	.	NC_000913	1429823	0	A	C	bias_e_value=354896	bias_p_value=0.076459	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.0	fisher_strand_p_value=0.351801	frequency=3.231e-01	ks_quality_p_value=0.0416008	major_base=A	major_cov=50/38	major_frequency=6.769e-01	minor_base=C	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=3.231e-01	polymorphism_score=135.2	prediction=polymorphism	ref_cov=50/38	total_cov=70/60
RA	570	.	NC_000913	1429851	0	G	A	bias_e_value=489930	bias_p_value=0.105551	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.0	fisher_strand_p_value=0.235944	frequency=2.880e-01	ks_quality_p_value=0.0927796	major_base=G	major_cov=51/38	major_frequency=7.120e-01	minor_base=A	minor_cov=16/20	new_cov=16/20	polymorphism_frequency=2.880e-01	polymorphism_score=92.4	prediction=polymorphism	ref_cov=51/38	total_cov=67/58
RA	571	.	NC_000913	1429858	0	C	T	bias_e_value=71415.6	bias_p_value=0.0153858	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.2	fisher_strand_p_value=0.42509	frequency=2.800e-01	ks_quality_p_value=0.0050692	major_base=C	major_cov=50/40	major_frequency=7.200e-01	minor_base=T	minor_cov=16/19	new_cov=16/19	polymorphism_frequency=2.800e-01	polymorphism_score=94.2	prediction=polymorphism	ref_cov=50/40	total_cov=66/59
RA	572	.	NC_000913	1429861	0	G	C	bias_e_value=731018	bias_p_value=0.157491	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.7	fisher_strand_p_value=0.437316	frequency=2.880e-01	ks_quality_p_value=0.083574	major_base=G	major_cov=49/40	major_frequency=7.120e-01	minor_base=C	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=2.880e-01	polymorphism_score=131.2	prediction=polymorphism	ref_cov=49/40	total_cov=66/59
RA	573	.	NC_000913	1429863	0	A	G	bias_e_value=128432	bias_p_value=0.0276695	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.3	fisher_strand_p_value=0.320547	frequency=2.734e-01	ks_quality_p_value=0.0133792	major_base=A	major_cov=53/40	major_frequency=7.266e-01	minor_base=G	minor_cov=16/19	new_cov=16/19	polymorphism_frequency=2.734e-01	polymorphism_score=97.9	prediction=polymorphism	ref_cov=53/40	total_cov=70/59
RA	574	.	NC_000913	1429888	0	C	T	bias_e_value=255521	bias_p_value=0.0550496	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.6	fisher_strand_p_value=1	frequency=2.288e-01	ks_quality_p_value=0.00978291	major_base=C	major_cov=49/42	major_frequency=7.712e-01	minor_base=T	minor_cov=14/13	new_cov=14/13	polymorphism_frequency=2.288e-01	polymorphism_score=55.8	prediction=polymorphism	ref_cov=49/42	total_cov=64/55
RA	575	.	NC_000913	1494388	0	C	.	bias_e_value=4641160	bias_p_value=0.999894	consensus_score=267.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985495	major_base=.	major_cov=26/32	major_frequency=9.831e-01	minor_base=C	minor_cov=0/1	new_cov=26/32	polymorphism_frequency=9.831e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/1	total_cov=26/33
RA	576	.	NC_000913	1508106	0	G	A	consensus_score=136.9	frequency=1	major_base=A	major_cov=29/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/15
RA	577	.	NC_000913	1517508	0	G	T	consensus_score=159.5	frequency=1	major_base=T	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	578	.	NC_000913	1538387	0	C	T	bias_e_value=3787150	bias_p_value=0.815906	consensus_score=144.5	fisher_strand_p_value=0.458333	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/26	major_frequency=9.792e-01	minor_base=C	minor_cov=1/0	new_cov=21/26	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=23/26
RA	579	.	NC_000913	1538412	0	C	T	consensus_score=147.1	frequency=1	major_base=T	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	580	.	NC_000913	1539710	0	C	T	consensus_score=113.2	frequency=1	major_base=T	major_cov=16/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	581	.	NC_000913	1634569	0	A	T	bias_e_value=4638650	bias_p_value=0.999353	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.8	fisher_strand_p_value=1	frequency=3.611e-01	ks_quality_p_value=0.964237	major_base=A	major_cov=10/13	major_frequency=6.389e-01	minor_base=T	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.611e-01	polymorphism_score=30.6	prediction=polymorphism	ref_cov=10/13	total_cov=16/20
RA	582	.	NC_000913	1634571	0	C	T	bias_e_value=4162930	bias_p_value=0.896864	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.4	fisher_strand_p_value=1	frequency=3.611e-01	ks_quality_p_value=0.581697	major_base=C	major_cov=10/13	major_frequency=6.389e-01	minor_base=T	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.611e-01	polymorphism_score=27.6	prediction=polymorphism	ref_cov=10/13	total_cov=16/20
RA	583	.	NC_000913	1634578	0	T	C	bias_e_value=4070200	bias_p_value=0.876886	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.0	fisher_strand_p_value=1	frequency=3.611e-01	ks_quality_p_value=0.546796	major_base=T	major_cov=10/13	major_frequency=6.389e-01	minor_base=C	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.611e-01	polymorphism_score=28.0	prediction=polymorphism	ref_cov=10/13	total_cov=16/20
RA	584	.	NC_000913	1634597	0	C	A	bias_e_value=3879040	bias_p_value=0.835702	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.6	fisher_strand_p_value=1	frequency=3.684e-01	ks_quality_p_value=0.484658	major_base=C	major_cov=11/13	major_frequency=6.316e-01	minor_base=A	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=3.684e-01	polymorphism_score=33.8	prediction=polymorphism	ref_cov=11/13	total_cov=17/22
RA	585	.	NC_000913	1634658	0	A	G	bias_e_value=4491020	bias_p_value=0.967547	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.5	fisher_strand_p_value=0.776066	frequency=3.725e-01	ks_quality_p_value=0.97453	major_base=A	major_cov=15/17	major_frequency=6.275e-01	minor_base=G	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=3.725e-01	polymorphism_score=45.8	prediction=polymorphism	ref_cov=15/17	total_cov=25/26
RA	586	.	NC_000913	1634661	0	C	G	bias_e_value=4382400	bias_p_value=0.944147	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.7	fisher_strand_p_value=0.776066	frequency=3.725e-01	ks_quality_p_value=0.882611	major_base=C	major_cov=15/17	major_frequency=6.275e-01	minor_base=G	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=3.725e-01	polymorphism_score=61.5	prediction=polymorphism	ref_cov=15/17	total_cov=25/26
RA	587	.	NC_000913	1634676	0	A	G	bias_e_value=4516230	bias_p_value=0.972979	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.8	fisher_strand_p_value=0.776722	frequency=4.082e-01	ks_quality_p_value=1	major_base=A	major_cov=13/16	major_frequency=5.918e-01	minor_base=G	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=4.082e-01	polymorphism_score=43.5	prediction=polymorphism	ref_cov=13/16	total_cov=23/26
RA	588	.	NC_000913	1634699	0	A	C	bias_e_value=4438100	bias_p_value=0.956146	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.5	fisher_strand_p_value=0.747912	frequency=4.359e-01	ks_quality_p_value=0.961148	major_base=A	major_cov=11/11	major_frequency=5.641e-01	minor_base=C	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=4.359e-01	polymorphism_score=33.4	prediction=polymorphism	ref_cov=11/11	total_cov=21/18
RA	589	.	NC_000913	1634724	0	G	A	bias_e_value=4274460	bias_p_value=0.920893	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.6	fisher_strand_p_value=0.733222	frequency=4.000e-01	ks_quality_p_value=0.858661	major_base=G	major_cov=10/11	major_frequency=6.000e-01	minor_base=A	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=4.000e-01	polymorphism_score=30.8	prediction=polymorphism	ref_cov=10/11	total_cov=18/17
RA	590	.	NC_000913	1634769	0	T	A	bias_e_value=4633820	bias_p_value=0.998312	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.7	fisher_strand_p_value=1	frequency=4.444e-01	ks_quality_p_value=0.942462	major_base=T	major_cov=8/7	major_frequency=5.556e-01	minor_base=A	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=4.444e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=8/7	total_cov=15/12
RA	591	.	NC_000913	1634778	0	T	G	bias_e_value=4582750	bias_p_value=0.987309	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.2	fisher_strand_p_value=1	frequency=3.929e-01	ks_quality_p_value=0.844974	major_base=T	major_cov=9/8	major_frequency=6.071e-01	minor_base=G	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=3.929e-01	polymorphism_score=24.9	prediction=polymorphism	ref_cov=9/8	total_cov=15/13
RA	592	.	NC_000913	1634799	0	A	G	bias_e_value=4641240	bias_p_value=0.999912	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.4	fisher_strand_p_value=1	frequency=4.000e-01	ks_quality_p_value=0.986755	major_base=A	major_cov=8/7	major_frequency=6.000e-01	minor_base=G	minor_cov=6/4	new_cov=6/4	polymorphism_frequency=4.000e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=8/7	total_cov=14/11
RA	593	.	NC_000913	1635974	0	T	G	bias_e_value=3085100	bias_p_value=0.664655	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.5	fisher_strand_p_value=0.489573	frequency=3.614e-01	ks_quality_p_value=0.618678	major_base=T	major_cov=33/20	major_frequency=6.386e-01	minor_base=G	minor_cov=16/14	new_cov=16/14	polymorphism_frequency=3.614e-01	polymorphism_score=74.4	prediction=polymorphism	ref_cov=33/20	total_cov=50/34
RA	594	.	NC_000913	1636068	0	T	C	bias_e_value=1755700	bias_p_value=0.378248	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.9	fisher_strand_p_value=0.497919	frequency=4.321e-01	ks_quality_p_value=0.244631	major_base=T	major_cov=28/18	major_frequency=5.679e-01	minor_base=C	minor_cov=18/17	new_cov=18/17	polymorphism_frequency=4.321e-01	polymorphism_score=107.8	prediction=polymorphism	ref_cov=28/18	total_cov=46/35
RA	595	.	NC_000913	1636074	0	C	T	bias_e_value=1175890	bias_p_value=0.253333	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.1	fisher_strand_p_value=0.370609	frequency=4.096e-01	ks_quality_p_value=0.186031	major_base=C	major_cov=30/19	major_frequency=5.904e-01	minor_base=T	minor_cov=17/17	new_cov=17/17	polymorphism_frequency=4.096e-01	polymorphism_score=86.4	prediction=polymorphism	ref_cov=30/19	total_cov=48/36
RA	596	.	NC_000913	1636128	0	C	T	bias_e_value=4587970	bias_p_value=0.988436	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.5	fisher_strand_p_value=1	frequency=2.676e-01	ks_quality_p_value=0.851824	major_base=C	major_cov=26/26	major_frequency=7.324e-01	minor_base=T	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.676e-01	polymorphism_score=42.4	prediction=polymorphism	ref_cov=26/26	total_cov=35/36
RA	597	.	NC_000913	1636145	0	T	C	bias_e_value=1248580	bias_p_value=0.268995	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.5	fisher_strand_p_value=1	frequency=2.113e-01	ks_quality_p_value=0.0748939	major_base=T	major_cov=26/30	major_frequency=7.887e-01	minor_base=C	minor_cov=7/8	new_cov=7/8	polymorphism_frequency=2.113e-01	polymorphism_score=36.7	prediction=polymorphism	ref_cov=26/30	total_cov=34/38
RA	598	.	NC_000913	1636173	0	T	C	bias_e_value=4250780	bias_p_value=0.91579	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.8	fisher_strand_p_value=1	frequency=2.258e-01	ks_quality_p_value=0.618764	major_base=T	major_cov=20/28	major_frequency=7.742e-01	minor_base=C	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=2.258e-01	polymorphism_score=30.8	prediction=polymorphism	ref_cov=20/28	total_cov=26/36
RA	599	.	NC_000913	1636382	0	C	A	bias_e_value=4168720	bias_p_value=0.898111	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.7	fisher_strand_p_value=1	frequency=2.051e-01	ks_quality_p_value=0.584008	major_base=C	major_cov=13/18	major_frequency=7.949e-01	minor_base=A	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=2.051e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=13/18	total_cov=16/23
RA	600	.	NC_000913	1636413	0	C	A	bias_e_value=3174000	bias_p_value=0.683808	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.3	fisher_strand_p_value=1	frequency=2.162e-01	ks_quality_p_value=0.319289	major_base=C	major_cov=12/17	major_frequency=7.838e-01	minor_base=A	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=2.162e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=12/17	total_cov=15/22
RA	601	.	NC_000913	1636423	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.9	fisher_strand_p_value=1	frequency=2.647e-01	ks_quality_p_value=1	major_base=T	major_cov=10/15	major_frequency=7.353e-01	minor_base=C	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.647e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=10/15	total_cov=15/20
RA	602	.	NC_000913	1636455	0	G	A	bias_e_value=4304700	bias_p_value=0.927407	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.5	fisher_strand_p_value=1	frequency=3.810e-01	ks_quality_p_value=0.644025	major_base=G	major_cov=9/17	major_frequency=6.190e-01	minor_base=A	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=3.810e-01	polymorphism_score=34.7	prediction=polymorphism	ref_cov=9/17	total_cov=15/27
RA	603	.	NC_000913	1636484	0	C	T	bias_e_value=2992620	bias_p_value=0.644732	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.4	fisher_strand_p_value=0.556717	frequency=5.227e-01	ks_quality_p_value=0.514772	major_base=T	major_cov=11/12	major_frequency=5.227e-01	minor_base=C	minor_cov=8/13	new_cov=11/12	polymorphism_frequency=5.227e-01	polymorphism_score=59.4	prediction=polymorphism	ref_cov=8/13	total_cov=19/26
RA	604	.	NC_000913	1636503	0	T	C	bias_e_value=2567300	bias_p_value=0.5531	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.1	fisher_strand_p_value=0.224439	frequency=5.556e-01	ks_quality_p_value=0.980199	major_base=C	major_cov=13/12	major_frequency=5.556e-01	minor_base=T	minor_cov=6/14	new_cov=13/12	polymorphism_frequency=5.556e-01	polymorphism_score=49.5	prediction=polymorphism	ref_cov=6/14	total_cov=19/26
RA	605	.	NC_000913	1652331	0	T	C	consensus_score=55.3	frequency=1	major_base=C	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	606	.	NC_000913	1667887	0	C	.	consensus_score=186.9	frequency=1	major_base=.	major_cov=18/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/23
RA	607	.	NC_000913	1697484	0	C	T	consensus_score=60.3	frequency=1	major_base=T	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	608	.	NC_000913	1744751	0	C	.	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=107.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996928	major_base=.	major_cov=13/12	major_frequency=9.615e-01	minor_base=C	minor_cov=0/1	new_cov=13/12	polymorphism_frequency=9.615e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=13/13
RA	609	.	NC_000913	1766994	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=226.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/32	major_frequency=9.853e-01	minor_base=C	minor_cov=1/0	new_cov=35/32	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	610	.	NC_000913	1792977	0	G	A	consensus_score=163.4	frequency=1	major_base=A	major_cov=29/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/21
RA	611	.	NC_000913	1795752	0	G	A	bias_e_value=2320070	bias_p_value=0.499837	consensus_score=132.3	fisher_strand_p_value=0.186585	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=23/16	major_frequency=9.512e-01	minor_base=C	minor_cov=0/2	new_cov=23/16	polymorphism_frequency=9.512e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/18
RA	612	.	NC_000913	1834806	0	G	A	consensus_score=131.3	frequency=1	major_base=A	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	613	.	NC_000913	1837658	0	G	A	consensus_score=232.3	frequency=1	major_base=A	major_cov=25/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/42
RA	614	.	NC_000913	1846553	0	G	A	bias_e_value=4354430	bias_p_value=0.93812	consensus_score=183.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.669501	major_base=A	major_cov=32/27	major_frequency=9.672e-01	minor_base=G	minor_cov=1/1	new_cov=32/27	polymorphism_frequency=9.672e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/1	total_cov=33/28
RA	615	.	NC_000913	1962881	0	A	G	consensus_score=246.9	frequency=1	major_base=G	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	616	.	NC_000913	1978243	0	G	T	consensus_score=73.8	frequency=1	major_base=T	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	617	.	NC_000913	2003264	0	C	T	consensus_score=97.7	frequency=1	major_base=T	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	618	.	NC_000913	2032423	0	G	A	consensus_score=153.0	frequency=1	major_base=A	major_cov=27/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/19
RA	619	.	NC_000913	2038955	0	C	T	consensus_score=68.8	frequency=1	major_base=T	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	620	.	NC_000913	2112861	0	C	T	consensus_score=90.7	frequency=1	major_base=T	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	621	.	NC_000913	2129008	0	C	T	bias_e_value=3808530	bias_p_value=0.820511	consensus_score=90.3	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/15	major_frequency=9.643e-01	minor_base=C	minor_cov=1/0	new_cov=12/15	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=13/15
RA	622	.	NC_000913	2146847	0	C	T	consensus_score=153.1	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	623	.	NC_000913	2152816	0	C	T	consensus_score=158.9	frequency=1	major_base=T	major_cov=26/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/20
RA	624	.	NC_000913	2154726	0	C	T	consensus_score=146.7	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	625	.	NC_000913	2173363	0	C	.	bias_e_value=846843	bias_p_value=0.182444	consensus_score=87.2	fisher_strand_p_value=0.063566	frequency=1	ks_quality_p_value=0.697274	major_base=.	major_cov=17/9	major_frequency=8.125e-01	minor_base=C	minor_cov=1/5	new_cov=17/9	polymorphism_frequency=8.125e-01	polymorphism_score=24.1	prediction=consensus	ref_cov=1/5	total_cov=18/14
RA	626	.	NC_000913	2173364	0	C	.	bias_e_value=1108120	bias_p_value=0.238733	consensus_score=89.6	fisher_strand_p_value=0.063566	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=17/9	major_frequency=8.125e-01	minor_base=C	minor_cov=1/5	new_cov=17/9	polymorphism_frequency=8.125e-01	polymorphism_score=21.7	prediction=consensus	ref_cov=1/5	total_cov=18/14
RA	627	.	NC_000913	2181660	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=147.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99899	major_base=T	major_cov=20/24	major_frequency=9.778e-01	minor_base=G	minor_cov=0/1	new_cov=20/24	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/25
RA	628	.	NC_000913	2187903	0	C	T	consensus_score=86.5	frequency=1	major_base=T	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	629	.	NC_000913	2188502	0	C	T	bias_e_value=4629230	bias_p_value=0.997324	consensus_score=43.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.927743	major_base=T	major_cov=8/7	major_frequency=9.375e-01	minor_base=C	minor_cov=0/1	new_cov=8/7	polymorphism_frequency=9.375e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=8/8
RA	630	.	NC_000913	2194106	0	C	T	bias_e_value=3891460	bias_p_value=0.838377	consensus_score=146.4	fisher_strand_p_value=0.488372	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/20	major_frequency=9.767e-01	minor_base=G	minor_cov=0/1	new_cov=22/20	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	631	.	NC_000913	2204319	0	T	C	consensus_score=48.9	frequency=1	major_base=C	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	632	.	NC_000913	2242121	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=146.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=25/23	major_frequency=9.796e-01	minor_base=C	minor_cov=1/0	new_cov=25/23	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	633	.	NC_000913	2251527	0	C	T	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=106.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998219	major_base=T	major_cov=17/16	major_frequency=9.706e-01	minor_base=G	minor_cov=0/1	new_cov=17/16	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/17
RA	634	.	NC_000913	2258643	0	G	A	consensus_score=91.7	frequency=1	major_base=A	major_cov=22/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/11
RA	635	.	NC_000913	2264035	0	C	T	consensus_score=171.9	frequency=1	major_base=T	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	636	.	NC_000913	2267899	0	C	T	consensus_score=71.3	frequency=1	major_base=T	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	637	.	NC_000913	2275757	0	G	A	consensus_score=127.9	frequency=1	major_base=A	major_cov=14/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/24
RA	638	.	NC_000913	2366708	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=124.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/18	major_frequency=9.744e-01	minor_base=C	minor_cov=1/0	new_cov=20/18	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=21/18
RA	639	.	NC_000913	2397444	0	G	A	consensus_score=241.3	frequency=1	major_base=A	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	640	.	NC_000913	2509606	0	C	T	bias_e_value=3358920	bias_p_value=0.723647	consensus_score=137.4	fisher_strand_p_value=0.422222	frequency=1	ks_quality_p_value=0.843068	major_base=T	major_cov=26/18	major_frequency=9.778e-01	minor_base=C	minor_cov=0/1	new_cov=26/18	polymorphism_frequency=9.778e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=26/19
RA	641	.	NC_000913	2509728	0	C	T	bias_e_value=2248950	bias_p_value=0.484515	consensus_score=157.2	fisher_strand_p_value=0.188571	frequency=1	ks_quality_p_value=0.941765	major_base=T	major_cov=28/20	major_frequency=9.600e-01	minor_base=C	minor_cov=0/2	new_cov=28/20	polymorphism_frequency=9.600e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/2	total_cov=28/23
RA	642	.	NC_000913	2543800	0	C	T	consensus_score=130.8	frequency=1	major_base=T	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	643	.	NC_000913	3268970	0	A	G	consensus_score=56.9	frequency=1	major_base=G	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	644	.	NC_000913	3486205	0	C	A	consensus_score=134.5	frequency=1	major_base=A	major_cov=24/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/15
RA	645	.	NC_000913	3518339	0	G	A	consensus_score=127.4	frequency=1	major_base=A	major_cov=14/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/23
RA	646	.	NC_000913	3560455	1	.	G	bias_e_value=3627200	bias_p_value=0.781445	consensus_score=124.1	fisher_strand_p_value=0.416667	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=14/21	major_frequency=9.722e-01	minor_base=.	minor_cov=1/0	new_cov=14/21	polymorphism_frequency=9.722e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=15/21
RA	647	.	NC_000913	3565710	0	G	A	consensus_score=132.6	frequency=1	major_base=A	major_cov=20/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/22
RA	648	.	NC_000913	3582671	0	G	A	consensus_score=36.5	frequency=1	major_base=A	major_cov=8/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/4
RA	649	.	NC_000913	3586071	0	G	A	bias_e_value=4641630	bias_p_value=0.999994	consensus_score=165.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996604	major_base=A	major_cov=28/20	major_frequency=9.796e-01	minor_base=C	minor_cov=1/0	new_cov=28/20	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/20
RA	650	.	NC_000913	3618708	0	G	A	bias_e_value=3914510	bias_p_value=0.843344	consensus_score=227.2	fisher_strand_p_value=0.495372	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/36	major_frequency=9.718e-01	minor_base=G	minor_cov=0/2	new_cov=33/36	polymorphism_frequency=9.718e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/2	total_cov=34/38
RA	651	.	NC_000913	3641902	0	G	A	bias_e_value=4641600	bias_p_value=0.999989	consensus_score=143.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995365	major_base=A	major_cov=20/21	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=20/21	polymorphism_frequency=9.762e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	652	.	NC_000913	3645029	0	G	A	consensus_score=158.2	frequency=1	major_base=A	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	653	.	NC_000913	3683289	0	G	A	consensus_score=147.6	frequency=1	major_base=A	major_cov=15/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/26
RA	654	.	NC_000913	3731941	0	G	A	consensus_score=56.2	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	655	.	NC_000913	3747839	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=256.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/37	major_frequency=9.750e-01	minor_base=C	minor_cov=1/1	new_cov=41/37	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	656	.	NC_000913	3812084	0	G	A	bias_e_value=4636970	bias_p_value=0.998992	consensus_score=81.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.955439	major_base=A	major_cov=11/15	major_frequency=9.630e-01	minor_base=G	minor_cov=0/1	new_cov=11/15	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=11/17
RA	657	.	NC_000913	4146389	1	.	T	bias_e_value=4607430	bias_p_value=0.992628	consensus_score=174.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.881055	major_base=T	major_cov=17/32	major_frequency=9.423e-01	minor_base=.	minor_cov=1/2	new_cov=17/32	polymorphism_frequency=9.423e-01	polymorphism_score=1.8	prediction=consensus	ref_cov=1/2	total_cov=18/34
RA	658	.	NC_000913	4296380	1	.	C	bias_e_value=4632930	bias_p_value=0.99812	consensus_score=72.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.939311	major_base=C	major_cov=8/15	major_frequency=9.200e-01	minor_base=.	minor_cov=1/1	new_cov=8/15	polymorphism_frequency=9.200e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=1/1	total_cov=9/16
RA	659	.	NC_000913	4296380	2	.	G	bias_e_value=4632930	bias_p_value=0.99812	consensus_score=71.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.939311	major_base=G	major_cov=8/15	major_frequency=9.200e-01	minor_base=.	minor_cov=1/1	new_cov=8/15	polymorphism_frequency=9.200e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=1/1	total_cov=9/16
RA	660	.	NC_000913	4347198	0	T	C	bias_e_value=3893360	bias_p_value=0.838788	consensus_score=169.7	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.998265	major_base=C	major_cov=24/23	major_frequency=9.592e-01	minor_base=T	minor_cov=0/2	new_cov=24/23	polymorphism_frequency=9.592e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/2	total_cov=24/25
RA	661	.	NC_000913	4377545	0	C	T	consensus_score=143.2	frequency=1	major_base=T	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	662	.	NC_000913	4380268	0	C	T	consensus_score=198.8	frequency=1	major_base=T	major_cov=30/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/28
RA	663	.	NC_000913	4385242	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=129.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/20	major_frequency=9.744e-01	minor_base=G	minor_cov=0/1	new_cov=18/20	polymorphism_frequency=9.744e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/1	total_cov=18/21
RA	664	.	NC_000913	4394248	0	C	T	bias_e_value=3433060	bias_p_value=0.739619	consensus_score=224.9	fisher_strand_p_value=0.382353	frequency=1	ks_quality_p_value=0.972296	major_base=T	major_cov=42/25	major_frequency=9.853e-01	minor_base=G	minor_cov=0/1	new_cov=42/25	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/26
RA	665	.	NC_000913	4414650	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=177.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/22	major_frequency=9.821e-01	minor_base=C	minor_cov=1/0	new_cov=33/22	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/22
RA	666	.	NC_000913	4415410	0	C	T	bias_e_value=4623460	bias_p_value=0.996081	consensus_score=164.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.912788	major_base=T	major_cov=24/27	major_frequency=9.808e-01	minor_base=.	minor_cov=0/1	new_cov=24/27	polymorphism_frequency=9.808e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	667	.	NC_000913	4434410	0	A	C	consensus_score=125.8	frequency=1	major_base=C	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	668	.	NC_000913	4542683	0	T	.	bias_e_value=3344680	bias_p_value=0.72058	consensus_score=83.8	fisher_strand_p_value=0.380952	frequency=1	ks_quality_p_value=0.92664	major_base=.	major_cov=7/13	major_frequency=9.524e-01	minor_base=T	minor_cov=1/0	new_cov=7/13	polymorphism_frequency=9.524e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/0	total_cov=8/13
RA	669	.	NC_000913	4623523	0	G	A	bias_e_value=2512880	bias_p_value=0.541377	consensus_score=186.1	fisher_strand_p_value=0.212341	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/25	major_frequency=9.655e-01	minor_base=T	minor_cov=0/2	new_cov=31/25	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
MC	670	.	NC_000913	257908	258683	771	0	left_inside_cov=0	left_outside_cov=29	right_inside_cov=0	right_outside_cov=29
MC	671	.	NC_000913	1196358	1211520	0	0	left_inside_cov=4	left_outside_cov=5	right_inside_cov=4	right_outside_cov=5
MC	672	.	NC_000913	1294035	1294175	0	0	left_inside_cov=0	left_outside_cov=28	right_inside_cov=0	right_outside_cov=28
MC	673	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=28	right_inside_cov=0	right_outside_cov=28
MC	674	.	NC_000913	1303073	1303084	0	0	left_inside_cov=0	left_outside_cov=27	right_inside_cov=0	right_outside_cov=27
MC	675	.	NC_000913	1978495	1979270	0	767	left_inside_cov=0	left_outside_cov=29	right_inside_cov=0	right_outside_cov=27
MC	676	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=53	right_inside_cov=1	right_outside_cov=54
MC	677	.	NC_000913	3423882	3424415	533	0	left_inside_cov=4	left_outside_cov=5	right_inside_cov=4	right_outside_cov=5
MC	678	.	NC_000913	3682261	3682294	0	0	left_inside_cov=0	left_outside_cov=39	right_inside_cov=0	right_outside_cov=39
JC	679	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=243	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=233	max_left_minus=197	max_left_plus=233	max_min_left=73	max_min_left_minus=73	max_min_left_plus=40	max_min_right=77	max_min_right_minus=77	max_min_right_plus=74	max_pos_hash_score=486	max_right=234	max_right_minus=211	max_right_plus=234	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.43	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	680	.	NC_000913	57276	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=26	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__57276__1__NC_000913__382590__-1__0____251__251__0__1	max_left=247	max_left_minus=247	max_left_plus=233	max_min_left=122	max_min_left_minus=109	max_min_left_plus=122	max_min_right=116	max_min_right_minus=93	max_min_right_plus=116	max_pos_hash_score=486	max_right=246	max_right_minus=246	max_right_plus=228	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=42
JC	681	.	NC_000913	57280	-1	NC_000913	381260	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__57280__-1__NC_000913__381260__1__0____251__251__0__1	max_left=232	max_left_minus=212	max_left_plus=232	max_min_left=123	max_min_left_minus=118	max_min_left_plus=123	max_min_right=125	max_min_right_minus=102	max_min_right_plus=125	max_pos_hash_score=486	max_right=246	max_right_minus=213	max_right_plus=246	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.88	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=39
JC	682	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=17	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=223	max_left_minus=223	max_left_plus=217	max_min_left=119	max_min_left_minus=70	max_min_left_plus=119	max_min_right=106	max_min_right_minus=89	max_min_right_plus=106	max_pos_hash_score=470	max_right=234	max_right_minus=234	max_right_plus=224	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.68	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	683	.	NC_000913	257908	1	NC_000913	1396001	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=243	key=NC_000913__257908__1__NC_000913__1396001__1__0____251__251__1__0	max_left=169	max_left_minus=0	max_left_plus=169	max_min_left=120	max_min_left_minus=0	max_min_left_plus=120	max_min_right=81	max_min_right_minus=0	max_min_right_plus=81	max_pos_hash_score=486	max_right=214	max_right_minus=0	max_right_plus=214	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.07	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=3
JC	684	.	NC_000913	257908	1	NC_000913	1596913	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1.579e-01	junction_possible_overlap_registers=243	key=NC_000913__257908__1__NC_000913__1596913__1__0____251__251__1__0	max_left=201	max_left_minus=189	max_left_plus=201	max_min_left=113	max_min_left_minus=113	max_min_left_plus=58	max_min_right=98	max_min_right_minus=98	max_min_right_plus=50	max_pos_hash_score=486	max_right=225	max_right_minus=155	max_right_plus=225	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.20	new_junction_read_count=9	polymorphism_frequency=1.579e-01	pos_hash_score=8	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=8
JC	685	.	NC_000913	279163	1	NC_000913	2666074	1	0	alignment_overlap=0	coverage_minus=22	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__279163__1__NC_000913__2666074__1__0____251__251__1__0	max_left=248	max_left_minus=248	max_left_plus=248	max_min_left=124	max_min_left_minus=119	max_min_left_plus=124	max_min_right=124	max_min_right_minus=124	max_min_right_plus=124	max_pos_hash_score=486	max_right=248	max_right_minus=248	max_right_plus=236	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=50	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=47
JC	686	.	NC_000913	291401	-1	NC_000913	2666082	-1	0	alignment_overlap=1	coverage_minus=26	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__291402__-1__NC_000913__2666082__-1__1____251__251__1__0	max_left=247	max_left_minus=226	max_left_plus=247	max_min_left=116	max_min_left_minus=116	max_min_left_plus=109	max_min_right=111	max_min_right_minus=111	max_min_right_plus=97	max_pos_hash_score=484	max_right=228	max_right_minus=228	max_right_plus=228	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=50	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=49
JC	687	.	NC_000913	381260	1	NC_000913	382183	-1	0	alignment_overlap=0	coverage_minus=25	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=243	key=NC_000913__381260__1__NC_000913__382183__-1__0____251__251__1__1	max_left=241	max_left_minus=239	max_left_plus=241	max_min_left=98	max_min_left_minus=83	max_min_left_plus=98	max_min_right=125	max_min_right_minus=125	max_min_right_plus=122	max_pos_hash_score=486	max_right=247	max_right_minus=246	max_right_plus=247	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=47	polymorphism_frequency=NA	pos_hash_score=42	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=47
JC	688	.	NC_000913	381260	1	NC_000913	1105376	1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__381260__1__NC_000913__1105375__1__1____251__251__1__0	max_left=240	max_left_minus=240	max_left_plus=226	max_min_left=88	max_min_left_minus=68	max_min_left_plus=88	max_min_right=122	max_min_right_minus=113	max_min_right_plus=122	max_pos_hash_score=484	max_right=230	max_right_minus=230	max_right_plus=216	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.66	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28
JC	689	.	NC_000913	382179	1	NC_000913	382590	-1	0	alignment_overlap=2	coverage_minus=30	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=241	key=NC_000913__382177__1__NC_000913__382590__-1__2____251__251__1__1	max_left=248	max_left_minus=248	max_left_plus=230	max_min_left=123	max_min_left_minus=122	max_min_left_plus=123	max_min_right=116	max_min_right_minus=116	max_min_right_plus=111	max_pos_hash_score=482	max_right=237	max_right_minus=237	max_right_plus=231	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=53	polymorphism_frequency=NA	pos_hash_score=52	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=52
JC	690	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=2.195e-01	junction_possible_overlap_registers=241	key=NC_000913__566774__-1__NC_000913__568034__1__2____251__251__0__0	max_left=236	max_left_minus=194	max_left_plus=236	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=112	max_min_right_minus=112	max_min_right_plus=110	max_pos_hash_score=482	max_right=112	max_right_minus=112	max_right_plus=110	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.32	new_junction_read_count=14	polymorphism_frequency=2.195e-01	pos_hash_score=11	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=2	side_1_possible_overlap_registers=243	side_1_read_count=50	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=50	side_2_redundant=0	total_non_overlap_reads=12
JC	691	.	NC_000913	568449	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__568449__1__NC_000913__1469240__-1__0____251__251__0__1	max_left=245	max_left_minus=245	max_left_plus=183	max_min_left=123	max_min_left_minus=81	max_min_left_plus=123	max_min_right=116	max_min_right_minus=116	max_min_right_plus=67	max_pos_hash_score=486	max_right=245	max_right_minus=245	max_right_plus=244	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.54	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	692	.	NC_000913	568453	-1	NC_000913	1467910	1	0	alignment_overlap=1	coverage_minus=26	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__568454__-1__NC_000913__1467910__1__1____251__251__0__1	max_left=247	max_left_minus=247	max_left_plus=218	max_min_left=118	max_min_left_minus=114	max_min_left_plus=118	max_min_right=121	max_min_right_minus=121	max_min_right_plus=120	max_pos_hash_score=484	max_right=245	max_right_minus=245	max_right_plus=244	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.91	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=237	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=40
JC	693	.	NC_000913	1105380	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1105380__-1__NC_000913__1467910__1__0____251__251__0__1	max_left=228	max_left_minus=228	max_left_plus=169	max_min_left=122	max_min_left_minus=116	max_min_left_plus=122	max_min_right=100	max_min_right_minus=93	max_min_right_plus=100	max_pos_hash_score=486	max_right=244	max_right_minus=234	max_right_plus=244	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=35
JC	694	.	NC_000913	1294034	-1	NC_000913	1294176	1	0	alignment_overlap=10	coverage_minus=12	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=233	key=NC_000913__1294034__-1__NC_000913__1294166__1__10____251__251__0__0	max_left=229	max_left_minus=229	max_left_plus=206	max_min_left=115	max_min_left_minus=106	max_min_left_plus=115	max_min_right=105	max_min_right_minus=105	max_min_right_plus=59	max_pos_hash_score=466	max_right=224	max_right_minus=224	max_right_plus=218	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.66	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=233	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	695	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=16	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=243	max_left_minus=236	max_left_plus=243	max_min_left=109	max_min_left_minus=97	max_min_left_plus=109	max_min_right=90	max_min_right_minus=90	max_min_right_plus=62	max_pos_hash_score=478	max_right=234	max_right_minus=234	max_right_plus=233	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.64	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28
JC	696	.	NC_000913	1303072	-1	NC_000913	1303085	1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1303072__-1__NC_000913__1303084__1__1____251__251__0__0	max_left=216	max_left_minus=216	max_left_plus=210	max_min_left=122	max_min_left_minus=122	max_min_left_plus=117	max_min_right=108	max_min_right_minus=108	max_min_right_plus=84	max_pos_hash_score=484	max_right=248	max_right_minus=246	max_right_plus=248	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.61	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	697	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____251__251__1__0	max_left=246	max_left_minus=240	max_left_plus=246	max_min_left=121	max_min_left_minus=121	max_min_left_plus=121	max_min_right=121	max_min_right_minus=116	max_min_right_plus=121	max_pos_hash_score=486	max_right=224	max_right_minus=218	max_right_plus=224	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.65	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28
JC	698	.	NC_000913	1469240	-1	NC_000913	1792772	1	0	alignment_overlap=2	coverage_minus=20	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__1469240__-1__NC_000913__1792770__1__2____251__251__1__0	max_left=243	max_left_minus=203	max_left_plus=243	max_min_left=120	max_min_left_minus=120	max_min_left_plus=77	max_min_right=108	max_min_right_minus=97	max_min_right_plus=108	max_pos_hash_score=482	max_right=247	max_right_minus=247	max_right_plus=196	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.84	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35
JC	699	.	NC_000913	1596921	-1	NC_000913	1979270	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.200e-01	junction_possible_overlap_registers=243	key=NC_000913__1596921__-1__NC_000913__1979270__-1__0____251__251__0__1	max_left=232	max_left_minus=232	max_left_plus=86	max_min_left=86	max_min_left_minus=29	max_min_left_plus=86	max_min_right=113	max_min_right_minus=113	max_min_right_plus=0	max_pos_hash_score=486	max_right=240	max_right_minus=222	max_right_plus=240	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.14	new_junction_read_count=6	polymorphism_frequency=1.200e-01	pos_hash_score=6	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=0	side_1_possible_overlap_registers=243	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	700	.	NC_000913	1651548	-1	NC_000913	1792776	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1651548__-1__NC_000913__1792776__-1__0____251__251__1__0	max_left=239	max_left_minus=215	max_left_plus=239	max_min_left=124	max_min_left_minus=124	max_min_left_plus=123	max_min_right=117	max_min_right_minus=93	max_min_right_plus=117	max_pos_hash_score=486	max_right=249	max_right_minus=249	max_right_plus=233	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.83	new_junction_read_count=37	polymorphism_frequency=9.731e-01	pos_hash_score=35	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=37
JC	701	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=19	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____251__251__1__0	max_left=245	max_left_minus=231	max_left_plus=245	max_min_left=117	max_min_left_minus=98	max_min_left_plus=117	max_min_right=124	max_min_right_minus=124	max_min_right_plus=122	max_pos_hash_score=484	max_right=236	max_right_minus=236	max_right_plus=231	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.82	new_junction_read_count=36	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=36
JC	702	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____251__251__1__0	max_left=238	max_left_minus=235	max_left_plus=238	max_min_left=124	max_min_left_minus=115	max_min_left_plus=124	max_min_right=104	max_min_right_minus=104	max_min_right_plus=89	max_pos_hash_score=486	max_right=241	max_right_minus=229	max_right_plus=241	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.79	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35
JC	703	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____251__251__0__1	max_left=241	max_left_minus=241	max_left_plus=229	max_min_left=113	max_min_left_minus=108	max_min_left_plus=113	max_min_right=124	max_min_right_minus=124	max_min_right_plus=64	max_pos_hash_score=486	max_right=233	max_right_minus=220	max_right_plus=233	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.61	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=26
JC	704	.	NC_000913	2068941	1	NC_000913	2319850	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__2068941__1__NC_000913__2319850__1__0____251__251__1__0	max_left=248	max_left_minus=247	max_left_plus=248	max_min_left=125	max_min_left_minus=125	max_min_left_plus=123	max_min_right=109	max_min_right_minus=109	max_min_right_plus=80	max_pos_hash_score=486	max_right=244	max_right_minus=200	max_right_plus=244	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.83	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	705	.	NC_000913	2269876	1	NC_000913	2288919	1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__2269875__1__NC_000913__2288919__1__1____251__251__0__1	max_left=246	max_left_minus=244	max_left_plus=246	max_min_left=121	max_min_left_minus=121	max_min_left_plus=86	max_min_right=122	max_min_right_minus=122	max_min_right_plus=119	max_pos_hash_score=484	max_right=236	max_right_minus=236	max_right_plus=195	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.70	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=30
JC	706	.	NC_000913	2269879	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__2269879__-1__NC_000913__2290113__-1__0____251__251__0__1	max_left=192	max_left_minus=192	max_left_plus=169	max_min_left=122	max_min_left_minus=122	max_min_left_plus=88	max_min_right=120	max_min_right_minus=120	max_min_right_plus=109	max_pos_hash_score=486	max_right=245	max_right_minus=245	max_right_plus=236	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.70	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=31
JC	707	.	NC_000913	2288919	1	NC_000913	4536236	1	0	alignment_overlap=1	coverage_minus=22	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__2288919__1__NC_000913__4536235__1__1____251__251__1__0	max_left=237	max_left_minus=237	max_left_plus=225	max_min_left=111	max_min_left_minus=111	max_min_left_plus=110	max_min_right=117	max_min_right_minus=96	max_min_right_plus=117	max_pos_hash_score=484	max_right=247	max_right_minus=247	max_right_plus=245	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	708	.	NC_000913	2290113	-1	NC_000913	4536239	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__2290113__-1__NC_000913__4536239__-1__0____251__251__1__0	max_left=244	max_left_minus=244	max_left_plus=240	max_min_left=104	max_min_left_minus=104	max_min_left_plus=0	max_min_right=112	max_min_right_minus=112	max_min_right_plus=69	max_pos_hash_score=486	max_right=234	max_right_minus=234	max_right_plus=69	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.54	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	709	.	NC_000913	2319854	-1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__2319854__-1__NC_000913__2997691__-1__0____251__251__0__1	max_left=243	max_left_minus=243	max_left_plus=243	max_min_left=122	max_min_left_minus=122	max_min_left_plus=121	max_min_right=121	max_min_right_minus=121	max_min_right_plus=116	max_pos_hash_score=486	max_right=246	max_right_minus=241	max_right_plus=246	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.90	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=40
JC	710	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=26	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=227	max_min_left=121	max_min_left_minus=102	max_min_left_plus=121	max_min_right=117	max_min_right_minus=117	max_min_right_plus=105	max_pos_hash_score=470	max_right=239	max_right_minus=230	max_right_plus=239	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=52	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51
JC	711	.	NC_000913	3187426	-1	NC_000913	3737137	1	0	alignment_overlap=1	coverage_minus=19	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3187426__-1__NC_000913__3737136__1__1____251__251__1__0	max_left=243	max_left_minus=243	max_left_plus=242	max_min_left=123	max_min_left_minus=123	max_min_left_plus=115	max_min_right=118	max_min_right_minus=106	max_min_right_plus=118	max_pos_hash_score=484	max_right=235	max_right_minus=220	max_right_plus=235	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.84	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	712	.	NC_000913	3682260	-1	NC_000913	3682295	1	0	alignment_overlap=2	coverage_minus=22	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__3682260__-1__NC_000913__3682293__1__2____251__251__0__0	max_left=238	max_left_minus=226	max_left_plus=238	max_min_left=124	max_min_left_minus=124	max_min_left_plus=109	max_min_right=123	max_min_right_minus=123	max_min_right_plus=114	max_pos_hash_score=482	max_right=243	max_right_minus=243	max_right_plus=243	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=38
JC	713	.	NC_000913	3737141	-1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__3737141__-1__NC_000913__4498181__1__0____251__251__0__1	max_left=228	max_left_minus=223	max_left_plus=228	max_min_left=124	max_min_left_minus=121	max_min_left_plus=124	max_min_right=121	max_min_right_minus=121	max_min_right_plus=102	max_pos_hash_score=486	max_right=242	max_right_minus=242	max_right_plus=240	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.83	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=37
JC	714	.	NC_000913	4123923	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=24	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__4123922__1__NC_000913__4498181__1__1____251__251__0__1	max_left=238	max_left_minus=231	max_left_plus=238	max_min_left=113	max_min_left_minus=113	max_min_left_plus=81	max_min_right=114	max_min_right_minus=108	max_min_right_plus=114	max_pos_hash_score=484	max_right=240	max_right_minus=240	max_right_plus=195	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.88	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=237	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=38
JC	715	.	NC_000913	4123927	-1	NC_000913	4499511	-1	0	alignment_overlap=1	coverage_minus=20	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____251__251__0__1	max_left=248	max_left_minus=240	max_left_plus=248	max_min_left=116	max_min_left_minus=89	max_min_left_plus=116	max_min_right=120	max_min_right_minus=117	max_min_right_plus=120	max_pos_hash_score=484	max_right=237	max_right_minus=237	max_right_plus=199	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.86	new_junction_read_count=38	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=237	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=38
JC	716	.	NC_000913	4135180	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__4135180__1__NC_000913__4498181__1__0____251__251__0__1	max_left=249	max_left_minus=245	max_left_plus=249	max_min_left=122	max_min_left_minus=79	max_min_left_plus=122	max_min_right=119	max_min_right_minus=119	max_min_right_plus=99	max_pos_hash_score=486	max_right=247	max_right_minus=238	max_right_plus=247	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=43
JC	717	.	NC_000913	4135184	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=32	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__4135184__-1__NC_000913__4499511__-1__0____251__251__0__1	max_left=243	max_left_minus=242	max_left_plus=243	max_min_left=122	max_min_left_minus=101	max_min_left_plus=122	max_min_right=124	max_min_right_minus=122	max_min_right_plus=124	max_pos_hash_score=486	max_right=242	max_right_minus=237	max_right_plus=242	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.58	new_junction_read_count=70	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=68
UN	718	.	NC_000913	15617	16560
UN	719	.	NC_000913	16581	16581
UN	720	.	NC_000913	16586	16586
UN	721	.	NC_000913	20004	20348
UN	722	.	NC_000913	20350	20352
UN	723	.	NC_000913	20354	20354
UN	724	.	NC_000913	20358	20358
UN	725	.	NC_000913	20362	20362
UN	726	.	NC_000913	223950	224557
UN	727	.	NC_000913	225104	225105
UN	728	.	NC_000913	225107	225351
UN	729	.	NC_000913	225353	225353
UN	730	.	NC_000913	225356	225356
UN	731	.	NC_000913	227183	227183
UN	732	.	NC_000913	227188	227189
UN	733	.	NC_000913	227191	228457
UN	734	.	NC_000913	257908	258683
UN	735	.	NC_000913	270752	270752
UN	736	.	NC_000913	270756	271116
UN	737	.	NC_000913	274143	274143
UN	738	.	NC_000913	274157	274157
UN	739	.	NC_000913	274159	274159
UN	740	.	NC_000913	274162	274162
UN	741	.	NC_000913	274165	274168
UN	742	.	NC_000913	274170	274929
UN	743	.	NC_000913	274932	274932
UN	744	.	NC_000913	274935	274935
UN	745	.	NC_000913	279372	279380
UN	746	.	NC_000913	279382	279713
UN	747	.	NC_000913	279715	279715
UN	748	.	NC_000913	279717	279717
UN	749	.	NC_000913	290825	291175
UN	750	.	NC_000913	315426	316266
UN	751	.	NC_000913	357875	357875
UN	752	.	NC_000913	357880	357881
UN	753	.	NC_000913	357883	357883
UN	754	.	NC_000913	357885	357887
UN	755	.	NC_000913	357890	357890
UN	756	.	NC_000913	381456	381458
UN	757	.	NC_000913	381463	382377
UN	758	.	NC_000913	391917	391917
UN	759	.	NC_000913	391923	391924
UN	760	.	NC_000913	391926	392773
UN	761	.	NC_000913	526099	526491
UN	762	.	NC_000913	526493	526494
UN	763	.	NC_000913	566981	566981
UN	764	.	NC_000913	566986	566986
UN	765	.	NC_000913	566994	567812
UN	766	.	NC_000913	574790	575580
UN	767	.	NC_000913	578571	578571
UN	768	.	NC_000913	578574	578574
UN	769	.	NC_000913	578605	578605
UN	770	.	NC_000913	579004	579004
UN	771	.	NC_000913	579127	579127
UN	772	.	NC_000913	579146	579146
UN	773	.	NC_000913	579271	579271
UN	774	.	NC_000913	579285	579285
UN	775	.	NC_000913	579811	579811
UN	776	.	NC_000913	580115	580115
UN	777	.	NC_000913	580119	580120
UN	778	.	NC_000913	608171	608173
UN	779	.	NC_000913	608178	609179
UN	780	.	NC_000913	609186	609186
UN	781	.	NC_000913	609190	609190
UN	782	.	NC_000913	688026	688027
UN	783	.	NC_000913	688029	688821
UN	784	.	NC_000913	688825	688825
UN	785	.	NC_000913	807324	807324
UN	786	.	NC_000913	807326	807326
UN	787	.	NC_000913	807328	807328
UN	788	.	NC_000913	987437	987437
UN	789	.	NC_000913	987442	987442
UN	790	.	NC_000913	987492	987492
UN	791	.	NC_000913	987494	987496
UN	792	.	NC_000913	987500	987501
UN	793	.	NC_000913	987503	987506
UN	794	.	NC_000913	1094433	1094433
UN	795	.	NC_000913	1094448	1094456
UN	796	.	NC_000913	1094459	1095296
UN	797	.	NC_000913	1095299	1095299
UN	798	.	NC_000913	1095306	1095306
UN	799	.	NC_000913	1097304	1097304
UN	800	.	NC_000913	1103813	1103813
UN	801	.	NC_000913	1103820	1103820
UN	802	.	NC_000913	1103824	1103830
UN	803	.	NC_000913	1103832	1103832
UN	804	.	NC_000913	1103836	1103836
UN	805	.	NC_000913	1196322	1196322
UN	806	.	NC_000913	1196329	1196329
UN	807	.	NC_000913	1196333	1196333
UN	808	.	NC_000913	1196339	1211523
UN	809	.	NC_000913	1211546	1211546
UN	810	.	NC_000913	1211568	1211568
UN	811	.	NC_000913	1219709	1219709
UN	812	.	NC_000913	1294035	1294175
UN	813	.	NC_000913	1299499	1300697
UN	814	.	NC_000913	1303073	1303084
UN	815	.	NC_000913	1396252	1396253
UN	816	.	NC_000913	1396256	1396258
UN	817	.	NC_000913	1396262	1396267
UN	818	.	NC_000913	1396269	1397023
UN	819	.	NC_000913	1397027	1397027
UN	820	.	NC_000913	1397030	1397030
UN	821	.	NC_000913	1397040	1397040
UN	822	.	NC_000913	1429111	1429111
UN	823	.	NC_000913	1429126	1429126
UN	824	.	NC_000913	1429128	1429128
UN	825	.	NC_000913	1429171	1429171
UN	826	.	NC_000913	1429204	1429204
UN	827	.	NC_000913	1429207	1429207
UN	828	.	NC_000913	1429225	1429225
UN	829	.	NC_000913	1429228	1429228
UN	830	.	NC_000913	1429231	1429231
UN	831	.	NC_000913	1429235	1429236
UN	832	.	NC_000913	1429243	1429243
UN	833	.	NC_000913	1429702	1429702
UN	834	.	NC_000913	1429708	1429708
UN	835	.	NC_000913	1429714	1429714
UN	836	.	NC_000913	1429724	1429724
UN	837	.	NC_000913	1429732	1429732
UN	838	.	NC_000913	1429735	1429735
UN	839	.	NC_000913	1429741	1429741
UN	840	.	NC_000913	1429744	1429744
UN	841	.	NC_000913	1429747	1429747
UN	842	.	NC_000913	1429753	1429753
UN	843	.	NC_000913	1429756	1429756
UN	844	.	NC_000913	1432874	1433013
UN	845	.	NC_000913	1433016	1433016
UN	846	.	NC_000913	1433018	1433019
UN	847	.	NC_000913	1434106	1434147
UN	848	.	NC_000913	1434149	1434153
UN	849	.	NC_000913	1434160	1434160
UN	850	.	NC_000913	1468123	1468123
UN	851	.	NC_000913	1468125	1468125
UN	852	.	NC_000913	1468131	1468133
UN	853	.	NC_000913	1468141	1469028
UN	854	.	NC_000913	1469030	1469030
UN	855	.	NC_000913	1469483	1469483
UN	856	.	NC_000913	1469490	1469490
UN	857	.	NC_000913	1469493	1469493
UN	858	.	NC_000913	1469497	1470315
UN	859	.	NC_000913	1470317	1470318
UN	860	.	NC_000913	1470320	1470326
UN	861	.	NC_000913	1470328	1470328
UN	862	.	NC_000913	1528534	1528534
UN	863	.	NC_000913	1528537	1528540
UN	864	.	NC_000913	1528542	1528543
UN	865	.	NC_000913	1528549	1528962
UN	866	.	NC_000913	1571066	1571136
UN	867	.	NC_000913	1633356	1633356
UN	868	.	NC_000913	1633359	1633470
UN	869	.	NC_000913	1633482	1633482
UN	870	.	NC_000913	1633489	1633490
UN	871	.	NC_000913	1634217	1634217
UN	872	.	NC_000913	1634226	1634439
UN	873	.	NC_000913	1636484	1636484
UN	874	.	NC_000913	1636503	1636503
UN	875	.	NC_000913	1651067	1651068
UN	876	.	NC_000913	1651070	1651346
UN	877	.	NC_000913	1812753	1812754
UN	878	.	NC_000913	1812757	1812757
UN	879	.	NC_000913	1812778	1812778
UN	880	.	NC_000913	1978495	1979270
UN	881	.	NC_000913	2066948	2067093
UN	882	.	NC_000913	2067102	2067102
UN	883	.	NC_000913	2069147	2069149
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UN	885	.	NC_000913	2101952	2102753
UN	886	.	NC_000913	2170382	2171204
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UN	890	.	NC_000913	2289896	2289896
UN	891	.	NC_000913	2289906	2289906
UN	892	.	NC_000913	2343811	2343811
UN	893	.	NC_000913	2386832	2386832
UN	894	.	NC_000913	2386839	2386865
UN	895	.	NC_000913	2386868	2386871
UN	896	.	NC_000913	2386874	2386876
UN	897	.	NC_000913	2386878	2386882
UN	898	.	NC_000913	2514468	2515387
UN	899	.	NC_000913	2558699	2565488
UN	900	.	NC_000913	2726295	2729022
UN	901	.	NC_000913	2729777	2729777
UN	902	.	NC_000913	2729779	2729779
UN	903	.	NC_000913	2729785	2729785
UN	904	.	NC_000913	2729787	2730742
UN	905	.	NC_000913	2757825	2757825
UN	906	.	NC_000913	2757832	2757837
UN	907	.	NC_000913	2765844	2765844
UN	908	.	NC_000913	2765885	2765887
UN	909	.	NC_000913	2765889	2765889
UN	910	.	NC_000913	2765897	2765897
UN	911	.	NC_000913	2765899	2765899
UN	912	.	NC_000913	2765920	2765920
UN	913	.	NC_000913	2765977	2765986
UN	914	.	NC_000913	2765988	2765990
UN	915	.	NC_000913	2906488	2906488
UN	916	.	NC_000913	2906492	2906492
UN	917	.	NC_000913	2906494	2906496
UN	918	.	NC_000913	2906498	2906504
UN	919	.	NC_000913	2906506	2906506
UN	920	.	NC_000913	2906508	2906517
UN	921	.	NC_000913	2906519	2906549
UN	922	.	NC_000913	2906551	2906591
UN	923	.	NC_000913	2906594	2906595
UN	924	.	NC_000913	2906597	2906600
UN	925	.	NC_000913	2906604	2906607
UN	926	.	NC_000913	2906609	2906609
UN	927	.	NC_000913	2947576	2947576
UN	928	.	NC_000913	2995120	2995120
UN	929	.	NC_000913	2996560	2996561
UN	930	.	NC_000913	2996567	2996568
UN	931	.	NC_000913	2996571	2996572
UN	932	.	NC_000913	2996574	2996575
UN	933	.	NC_000913	2996586	2997506
UN	934	.	NC_000913	3130368	3131132
UN	935	.	NC_000913	3131142	3131142
UN	936	.	NC_000913	3131144	3131145
UN	937	.	NC_000913	3131148	3131148
UN	938	.	NC_000913	3131150	3131152
UN	939	.	NC_000913	3131154	3131156
UN	940	.	NC_000913	3186313	3186316
UN	941	.	NC_000913	3186318	3186320
UN	942	.	NC_000913	3186322	3187206
UN	943	.	NC_000913	3365765	3366535
UN	944	.	NC_000913	3423859	3423859
UN	945	.	NC_000913	3423861	3423861
UN	946	.	NC_000913	3423867	3423870
UN	947	.	NC_000913	3423872	3424437
UN	948	.	NC_000913	3424447	3424447
UN	949	.	NC_000913	3424875	3426621
UN	950	.	NC_000913	3427020	3427020
UN	951	.	NC_000913	3427025	3428335
UN	952	.	NC_000913	3428339	3428339
UN	953	.	NC_000913	3428341	3428343
UN	954	.	NC_000913	3428345	3428345
UN	955	.	NC_000913	3470381	3470381
UN	956	.	NC_000913	3470388	3470529
UN	957	.	NC_000913	3470533	3470533
UN	958	.	NC_000913	3470541	3470541
UN	959	.	NC_000913	3583660	3583992
UN	960	.	NC_000913	3583994	3583995
UN	961	.	NC_000913	3583998	3583998
UN	962	.	NC_000913	3619510	3620857
UN	963	.	NC_000913	3621309	3622084
UN	964	.	NC_000913	3652215	3652215
UN	965	.	NC_000913	3652217	3652217
UN	966	.	NC_000913	3652220	3652222
UN	967	.	NC_000913	3652226	3652228
UN	968	.	NC_000913	3652230	3652230
UN	969	.	NC_000913	3652233	3653020
UN	970	.	NC_000913	3666577	3666584
UN	971	.	NC_000913	3666586	3666663
UN	972	.	NC_000913	3682261	3682294
UN	973	.	NC_000913	3762483	3762486
UN	974	.	NC_000913	3762488	3763848
UN	975	.	NC_000913	3764313	3765083
UN	976	.	NC_000913	3862661	3862661
UN	977	.	NC_000913	3862664	3862664
UN	978	.	NC_000913	3942250	3943184
UN	979	.	NC_000913	3943192	3943195
UN	980	.	NC_000913	3944260	3944260
UN	981	.	NC_000913	3944266	3944267
UN	982	.	NC_000913	3944269	3944269
UN	983	.	NC_000913	3944272	3944272
UN	984	.	NC_000913	3944275	3944275
UN	985	.	NC_000913	3944277	3944277
UN	986	.	NC_000913	3944284	3945364
UN	987	.	NC_000913	4035374	4035385
UN	988	.	NC_000913	4035388	4035525
UN	989	.	NC_000913	4035532	4035532
UN	990	.	NC_000913	4035537	4035537
UN	991	.	NC_000913	4035966	4036876
UN	992	.	NC_000913	4036881	4036881
UN	993	.	NC_000913	4038020	4038020
UN	994	.	NC_000913	4038024	4038024
UN	995	.	NC_000913	4038036	4038488
UN	996	.	NC_000913	4038503	4038503
UN	997	.	NC_000913	4038925	4039172
UN	998	.	NC_000913	4039179	4039179
UN	999	.	NC_000913	4039593	4039593
UN	1000	.	NC_000913	4039598	4040387
UN	1001	.	NC_000913	4040393	4040393
UN	1002	.	NC_000913	4040395	4040395
UN	1003	.	NC_000913	4040397	4040398
UN	1004	.	NC_000913	4166476	4166477
UN	1005	.	NC_000913	4166479	4167996
UN	1006	.	NC_000913	4167999	4167999
UN	1007	.	NC_000913	4168002	4168002
UN	1008	.	NC_000913	4168748	4168748
UN	1009	.	NC_000913	4168772	4168772
UN	1010	.	NC_000913	4168775	4168775
UN	1011	.	NC_000913	4168778	4168778
UN	1012	.	NC_000913	4168781	4171428
UN	1013	.	NC_000913	4176747	4176750
UN	1014	.	NC_000913	4176752	4176752
UN	1015	.	NC_000913	4176757	4176887
UN	1016	.	NC_000913	4176892	4176892
UN	1017	.	NC_000913	4176895	4176897
UN	1018	.	NC_000913	4208295	4208295
UN	1019	.	NC_000913	4208308	4208310
UN	1020	.	NC_000913	4208312	4209509
UN	1021	.	NC_000913	4210212	4212942
UN	1022	.	NC_000913	4212944	4212946
UN	1023	.	NC_000913	4296251	4296251
UN	1024	.	NC_000913	4296268	4296268
UN	1025	.	NC_000913	4378775	4378775
UN	1026	.	NC_000913	4498390	4498391
UN	1027	.	NC_000913	4498396	4499289
UN	1028	.	NC_000913	4499298	4499298
UN	1029	.	NC_000913	4499300	4499300
UN	1030	.	NC_000913	4507625	4507625
UN	1031	.	NC_000913	4507629	4507630
UN	1032	.	NC_000913	4507640	4507640
UN	1033	.	NC_000913	4507642	4508490
UN	1034	.	NC_000913	4508493	4508493