#=GENOME_DIFF	1.0
#=CREATED	11:39:31 29 Nov 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20240527run10/IH186_S20_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20240527run10/IH186_S20_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20240527run10/IH186_S20_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20240527run10/IH186_S20_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20240527run10/IH186_S20_L001_R2_001.fastq.gz
#=CONVERTED-BASES	196486200
#=CONVERTED-READS	827045
#=INPUT-BASES	196490143
#=INPUT-READS	827134
#=MAPPED-BASES	180688917
#=MAPPED-READS	764593
MOB	1	439,440	NC_000913	57276	IS2	1	5
SNP	2	108	NC_000913	71134	A
SNP	3	109	NC_000913	74872	T
DEL	4	430,441	NC_000913	257908	776
SNP	5	110	NC_000913	315391	T
SNP	6	111	NC_000913	324526	T
SNP	7	112	NC_000913	334755	T
SNP	8	113	NC_000913	351119	T
SNP	9	115	NC_000913	358335	T
SNP	10	117	NC_000913	370161	T
SNP	11	118	NC_000913	398532	T
SNP	12	119	NC_000913	407365	T
SNP	13	120	NC_000913	438694	T
SNP	14	121	NC_000913	446923	T
SNP	15	122	NC_000913	448935	T
SNP	16	123	NC_000913	463208	T
SNP	17	124	NC_000913	480023	T
SNP	18	125	NC_000913	497134	T
SNP	19	126	NC_000913	547889	T
SNP	20	127	NC_000913	557635	T
MOB	21	448,449	NC_000913	568449	IS2	-1	5
SNP	22	170	NC_000913	577424	A
SNP	23	210	NC_000913	585900	T
SNP	24	211	NC_000913	587830	T
SNP	25	212	NC_000913	587879	T
SNP	26	213	NC_000913	590620	A
SNP	27	214	NC_000913	601732	A
SNP	28	215	NC_000913	603023	A
SNP	29	216	NC_000913	603208	A
SNP	30	217	NC_000913	615848	A
SNP	31	218	NC_000913	624510	T
SNP	32	219	NC_000913	631633	A
SNP	33	220	NC_000913	642476	A
SNP	34	221	NC_000913	668829	T
SNP	35	222	NC_000913	675108	A
SNP	36	223	NC_000913	740893	A
SNP	37	224	NC_000913	793557	A
SNP	38	225	NC_000913	808673	A
SNP	39	226	NC_000913	817297	T
SNP	40	227	NC_000913	846078	T
SNP	41	228	NC_000913	849617	T
SNP	42	229	NC_000913	862786	T
SNP	43	230	NC_000913	987152	T
SNP	44	231	NC_000913	1015227	A
SNP	45	233	NC_000913	1037526	A
SNP	46	234	NC_000913	1065815	A
SNP	47	235	NC_000913	1077066	A
SNP	48	236	NC_000913	1077466	A
MOB	49	445,450	NC_000913	1105376	IS2	-1	5
SNP	50	237	NC_000913	1196220	T
SNP	51	238	NC_000913	1196232	T
SNP	52	239	NC_000913	1196245	C
SNP	53	240	NC_000913	1196247	G
SNP	54	241	NC_000913	1196277	T
SNP	55	242	NC_000913	1196280	C
SNP	56	243	NC_000913	1196283	G
SNP	57	244	NC_000913	1290881	T
DEL	58	432,451	NC_000913	1294035	141
DEL	59	433,453	NC_000913	1303073	12
SNP	60	245	NC_000913	1337394	G
SNP	61	246	NC_000913	1353758	A
SNP	62	247	NC_000913	1412163	T
SNP	63	248	NC_000913	1412294	T
DEL	64	366	NC_000913	1494388	1
SNP	65	367	NC_000913	1517508	T
SNP	66	393	NC_000913	1652331	C
DEL	67	394	NC_000913	1667887	1
SNP	68	395	NC_000913	1672251	A
SNP	69	396	NC_000913	1680659	C
SNP	70	397	NC_000913	1700308	T
SNP	71	398	NC_000913	1700767	T
SNP	72	399	NC_000913	1701272	T
SNP	73	400	NC_000913	1722089	A
DEL	74	401	NC_000913	1744751	1
SNP	75	402	NC_000913	1750270	A
SNP	76	403	NC_000913	1766490	A
SNP	77	404	NC_000913	1776012	A
MOB	78	455,456	NC_000913	1792772	IS2	-1	5
SNP	79	405	NC_000913	1858058	G
SNP	80	406	NC_000913	1905327	T
SNP	81	407	NC_000913	1936057	T
SNP	82	408	NC_000913	1961363	T
SNP	83	409	NC_000913	1978243	T
SNP	84	410	NC_000913	2003264	T
SNP	85	411	NC_000913	2007727	T
SNP	86	412	NC_000913	2032423	A
SNP	87	413	NC_000913	2077829	A
DEL	88	414,415	NC_000913	2173363	2
SNP	89	416	NC_000913	2242121	G
MOB	90	461,462	NC_000913	2269876	IS5	1	4
MOB	91	460,465	NC_000913	2319850	IS2	1	5
SNP	92	417	NC_000913	2397444	A
MOB	93	457,458	NC_000913	2406780	IS1	-1	8
DEL	94	435,466	NC_000913	2558699	6790
MOB	95	442,443	NC_000913	2666074	IS1	1	9
SNP	96	419	NC_000913	3268970	G
SNP	97	420	NC_000913	3486205	A
INS	98	422	NC_000913	3560455	G
DEL	99	437,469	NC_000913	3682261	34
MOB	100	468,470	NC_000913	3737137	IS2	1	5
MOB	101	471,472	NC_000913	4123923	IS2	-1	5
MOB	102	473,474	NC_000913	4135180	IS2	-1	5
INS	103	423	NC_000913	4146389	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
INS	104	424,425	NC_000913	4296381	GC
MOB	105	463,464	NC_000913	4536236	IS5	1	4
DEL	106	428	NC_000913	4542683	1
DEL	107	429	NC_000913	4542725	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
RA	108	.	NC_000913	71134	0	G	A	consensus_score=94.0	frequency=1	major_base=A	major_cov=7/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/19
RA	109	.	NC_000913	74872	0	C	T	consensus_score=131.4	frequency=1	major_base=T	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	110	.	NC_000913	315391	0	C	T	consensus_score=34.7	frequency=1	major_base=T	major_cov=9/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/3
RA	111	.	NC_000913	324526	0	C	T	consensus_score=54.3	frequency=1	major_base=T	major_cov=6/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	112	.	NC_000913	334755	0	C	T	consensus_score=50.0	frequency=1	major_base=T	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	113	.	NC_000913	351119	0	C	T	bias_e_value=3876370	bias_p_value=0.835128	consensus_score=105.2	fisher_strand_p_value=0.485887	frequency=1	ks_quality_p_value=0.995842	major_base=T	major_cov=15/15	major_frequency=9.375e-01	minor_base=G	minor_cov=0/2	new_cov=15/15	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	114	.	NC_000913	354288	0	T	G	bias_e_value=5.63636e-05	bias_p_value=1.2143e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.6	fisher_strand_p_value=4.11358e-13	frequency=4.694e-01	ks_quality_p_value=1	major_base=T	major_cov=1/25	major_frequency=5.306e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=4.694e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=1/25	total_cov=25/25
RA	115	.	NC_000913	358335	0	C	T	bias_e_value=4589010	bias_p_value=0.988659	consensus_score=118.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.853227	major_base=T	major_cov=17/18	major_frequency=9.722e-01	minor_base=C	minor_cov=1/0	new_cov=17/18	polymorphism_frequency=9.722e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=18/18
RA	116	.	NC_000913	366526	0	T	G	bias_e_value=42.7141	bias_p_value=9.20235e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.7	fisher_strand_p_value=6.00457e-07	frequency=3.846e-01	ks_quality_p_value=1	major_base=T	major_cov=3/21	major_frequency=6.154e-01	minor_base=G	minor_cov=14/1	new_cov=14/1	polymorphism_frequency=3.846e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=3/21	total_cov=17/22
RA	117	.	NC_000913	370161	0	C	T	consensus_score=147.2	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	118	.	NC_000913	398532	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=130.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/20	major_frequency=9.756e-01	minor_base=G	minor_cov=0/1	new_cov=20/20	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=20/22
RA	119	.	NC_000913	407365	0	C	T	consensus_score=90.0	frequency=1	major_base=T	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	120	.	NC_000913	438694	0	C	T	consensus_score=126.2	frequency=1	major_base=T	major_cov=13/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/23
RA	121	.	NC_000913	446923	0	C	T	consensus_score=64.7	frequency=1	major_base=T	major_cov=13/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/7
RA	122	.	NC_000913	448935	0	C	T	consensus_score=129.5	frequency=1	major_base=T	major_cov=18/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/18
RA	123	.	NC_000913	463208	0	C	T	consensus_score=176.6	frequency=1	major_base=T	major_cov=26/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/25
RA	124	.	NC_000913	480023	0	C	T	consensus_score=55.6	frequency=1	major_base=T	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	125	.	NC_000913	497134	0	C	T	consensus_score=142.2	frequency=1	major_base=T	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	126	.	NC_000913	547889	0	C	T	consensus_score=159.4	frequency=1	major_base=T	major_cov=26/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/22
RA	127	.	NC_000913	557635	0	A	T	consensus_score=163.1	frequency=1	major_base=T	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	128	.	NC_000913	566173	0	C	G	bias_e_value=1074880	bias_p_value=0.231573	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.9	fisher_strand_p_value=0.167012	frequency=3.704e-01	ks_quality_p_value=0.365164	major_base=C	major_cov=15/19	major_frequency=6.296e-01	minor_base=G	minor_cov=13/7	new_cov=13/7	polymorphism_frequency=3.704e-01	polymorphism_score=75.6	prediction=polymorphism	ref_cov=15/19	total_cov=28/26
RA	129	.	NC_000913	566205	0	T	C	bias_e_value=48445.6	bias_p_value=0.0104372	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.2	fisher_strand_p_value=0.204536	frequency=3.750e-01	ks_quality_p_value=0.00672392	major_base=T	major_cov=18/22	major_frequency=6.250e-01	minor_base=C	minor_cov=15/9	new_cov=15/9	polymorphism_frequency=3.750e-01	polymorphism_score=71.9	prediction=polymorphism	ref_cov=18/22	total_cov=33/31
RA	130	.	NC_000913	566245	0	G	A	bias_e_value=212398	bias_p_value=0.0457592	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.5	fisher_strand_p_value=0.0966476	frequency=3.636e-01	ks_quality_p_value=0.0809207	major_base=G	major_cov=14/21	major_frequency=6.364e-01	minor_base=A	minor_cov=13/7	new_cov=13/7	polymorphism_frequency=3.636e-01	polymorphism_score=57.9	prediction=polymorphism	ref_cov=14/21	total_cov=27/29
RA	131	.	NC_000913	566277	0	C	T	bias_e_value=327284	bias_p_value=0.0705103	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.1	fisher_strand_p_value=0.0705522	frequency=3.019e-01	ks_quality_p_value=0.187707	major_base=C	major_cov=14/23	major_frequency=6.981e-01	minor_base=T	minor_cov=11/5	new_cov=11/5	polymorphism_frequency=3.019e-01	polymorphism_score=41.3	prediction=polymorphism	ref_cov=14/23	total_cov=25/28
RA	132	.	NC_000913	566323	0	C	T	bias_e_value=618936	bias_p_value=0.133344	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.4	fisher_strand_p_value=0.0345868	frequency=2.000e-01	ks_quality_p_value=0.852144	major_base=C	major_cov=16/24	major_frequency=8.000e-01	minor_base=T	minor_cov=8/2	new_cov=8/2	polymorphism_frequency=2.000e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=16/24	total_cov=24/26
RA	133	.	NC_000913	566435	0	G	A	bias_e_value=3422330	bias_p_value=0.737308	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.9	fisher_strand_p_value=0.726805	frequency=2.632e-01	ks_quality_p_value=0.508296	major_base=G	major_cov=12/16	major_frequency=7.368e-01	minor_base=A	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.632e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=12/16	total_cov=17/22
RA	134	.	NC_000913	566444	0	T	C	bias_e_value=3558040	bias_p_value=0.766547	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.3	fisher_strand_p_value=0.734239	frequency=3.158e-01	ks_quality_p_value=0.544827	major_base=T	major_cov=11/15	major_frequency=6.842e-01	minor_base=C	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=3.158e-01	polymorphism_score=30.7	prediction=polymorphism	ref_cov=11/15	total_cov=17/21
RA	135	.	NC_000913	566451	0	T	C	bias_e_value=2746040	bias_p_value=0.591609	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.4	fisher_strand_p_value=1	frequency=3.421e-01	ks_quality_p_value=0.246437	major_base=T	major_cov=11/14	major_frequency=6.579e-01	minor_base=C	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.421e-01	polymorphism_score=31.2	prediction=polymorphism	ref_cov=11/14	total_cov=17/21
RA	136	.	NC_000913	566463	0	T	C	bias_e_value=4615430	bias_p_value=0.994351	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.7	fisher_strand_p_value=1	frequency=3.721e-01	ks_quality_p_value=0.89561	major_base=T	major_cov=13/14	major_frequency=6.279e-01	minor_base=C	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=3.721e-01	polymorphism_score=45.3	prediction=polymorphism	ref_cov=13/14	total_cov=21/22
RA	137	.	NC_000913	566468	0	C	T	bias_e_value=4507030	bias_p_value=0.970997	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.6	fisher_strand_p_value=1	frequency=4.091e-01	ks_quality_p_value=0.769029	major_base=C	major_cov=12/14	major_frequency=5.909e-01	minor_base=T	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=4.091e-01	polymorphism_score=52.3	prediction=polymorphism	ref_cov=12/14	total_cov=21/24
RA	138	.	NC_000913	566492	0	G	T	bias_e_value=3645640	bias_p_value=0.78542	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.8	fisher_strand_p_value=1	frequency=4.364e-01	ks_quality_p_value=0.421235	major_base=G	major_cov=16/15	major_frequency=5.636e-01	minor_base=T	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=4.364e-01	polymorphism_score=78.8	prediction=polymorphism	ref_cov=16/15	total_cov=29/26
RA	139	.	NC_000913	566493	0	G	A	bias_e_value=1300370	bias_p_value=0.280153	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.6	fisher_strand_p_value=1	frequency=4.444e-01	ks_quality_p_value=0.079247	major_base=G	major_cov=16/14	major_frequency=5.556e-01	minor_base=A	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=4.444e-01	polymorphism_score=75.6	prediction=polymorphism	ref_cov=16/14	total_cov=29/26
RA	140	.	NC_000913	566498	0	C	T	bias_e_value=4512590	bias_p_value=0.972195	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.0	fisher_strand_p_value=0.784553	frequency=4.340e-01	ks_quality_p_value=0.986097	major_base=C	major_cov=14/16	major_frequency=5.660e-01	minor_base=T	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.340e-01	polymorphism_score=69.8	prediction=polymorphism	ref_cov=14/16	total_cov=26/27
RA	141	.	NC_000913	566510	0	G	C	bias_e_value=3041870	bias_p_value=0.655341	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.2	fisher_strand_p_value=0.586157	frequency=4.340e-01	ks_quality_p_value=0.503573	major_base=G	major_cov=13/17	major_frequency=5.660e-01	minor_base=C	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.340e-01	polymorphism_score=87.7	prediction=polymorphism	ref_cov=13/17	total_cov=26/28
RA	142	.	NC_000913	566513	0	C	T	bias_e_value=3938820	bias_p_value=0.848582	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.8	fisher_strand_p_value=0.584298	frequency=4.444e-01	ks_quality_p_value=0.860708	major_base=C	major_cov=13/17	major_frequency=5.556e-01	minor_base=T	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=4.444e-01	polymorphism_score=68.4	prediction=polymorphism	ref_cov=13/17	total_cov=26/28
RA	143	.	NC_000913	566519	0	T	C	bias_e_value=3118230	bias_p_value=0.671794	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.3	fisher_strand_p_value=0.422366	frequency=4.364e-01	ks_quality_p_value=0.731392	major_base=T	major_cov=13/18	major_frequency=5.636e-01	minor_base=C	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=4.364e-01	polymorphism_score=65.0	prediction=polymorphism	ref_cov=13/18	total_cov=26/29
RA	144	.	NC_000913	566522	0	C	A	bias_e_value=3395640	bias_p_value=0.731558	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.8	fisher_strand_p_value=0.584298	frequency=4.444e-01	ks_quality_p_value=0.622461	major_base=C	major_cov=13/17	major_frequency=5.556e-01	minor_base=A	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=4.444e-01	polymorphism_score=75.8	prediction=polymorphism	ref_cov=13/17	total_cov=26/28
RA	145	.	NC_000913	566528	0	A	G	bias_e_value=1598300	bias_p_value=0.344339	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.6	fisher_strand_p_value=0.589681	frequency=4.286e-01	ks_quality_p_value=0.180092	major_base=A	major_cov=14/18	major_frequency=5.714e-01	minor_base=G	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=4.286e-01	polymorphism_score=71.6	prediction=polymorphism	ref_cov=14/18	total_cov=27/29
RA	146	.	NC_000913	566530	1	.	T	bias_e_value=62691.7	bias_p_value=0.0135063	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.5	fisher_strand_p_value=0.787491	frequency=4.182e-01	ks_quality_p_value=0.00235228	major_base=.	major_cov=15/17	major_frequency=5.818e-01	minor_base=T	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.182e-01	polymorphism_score=124.9	prediction=polymorphism	ref_cov=15/17	total_cov=27/28
RA	147	.	NC_000913	566532	0	A	T	bias_e_value=729833	bias_p_value=0.157236	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.3	fisher_strand_p_value=0.783556	frequency=4.259e-01	ks_quality_p_value=0.0465457	major_base=A	major_cov=14/17	major_frequency=5.741e-01	minor_base=T	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.259e-01	polymorphism_score=80.1	prediction=polymorphism	ref_cov=14/17	total_cov=27/28
RA	148	.	NC_000913	566535	0	T	.	bias_e_value=3044070	bias_p_value=0.655816	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.4	fisher_strand_p_value=0.783556	frequency=4.259e-01	ks_quality_p_value=0.377207	major_base=T	major_cov=14/17	major_frequency=5.741e-01	minor_base=.	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.259e-01	polymorphism_score=93.6	prediction=polymorphism	ref_cov=14/17	total_cov=27/28
RA	149	.	NC_000913	566536	0	G	A	bias_e_value=4510120	bias_p_value=0.971664	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.2	fisher_strand_p_value=0.784553	frequency=4.444e-01	ks_quality_p_value=0.983471	major_base=G	major_cov=14/16	major_frequency=5.556e-01	minor_base=A	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=4.444e-01	polymorphism_score=72.0	prediction=polymorphism	ref_cov=14/16	total_cov=27/28
RA	150	.	NC_000913	566543	0	A	T	bias_e_value=1938100	bias_p_value=0.417545	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.4	fisher_strand_p_value=0.60095	frequency=4.167e-01	ks_quality_p_value=0.234906	major_base=A	major_cov=16/19	major_frequency=5.833e-01	minor_base=T	minor_cov=14/11	new_cov=14/11	polymorphism_frequency=4.167e-01	polymorphism_score=82.0	prediction=polymorphism	ref_cov=16/19	total_cov=30/30
RA	151	.	NC_000913	566547	0	C	A	bias_e_value=1658000	bias_p_value=0.3572	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.0	fisher_strand_p_value=0.60095	frequency=4.167e-01	ks_quality_p_value=0.186374	major_base=C	major_cov=16/19	major_frequency=5.833e-01	minor_base=A	minor_cov=14/11	new_cov=14/11	polymorphism_frequency=4.167e-01	polymorphism_score=74.8	prediction=polymorphism	ref_cov=16/19	total_cov=30/30
RA	152	.	NC_000913	566565	0	A	G	bias_e_value=3928380	bias_p_value=0.846333	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.8	fisher_strand_p_value=0.79886	frequency=4.590e-01	ks_quality_p_value=0.625458	major_base=A	major_cov=16/17	major_frequency=5.410e-01	minor_base=G	minor_cov=15/13	new_cov=15/13	polymorphism_frequency=4.590e-01	polymorphism_score=85.8	prediction=polymorphism	ref_cov=16/17	total_cov=31/30
RA	153	.	NC_000913	566570	0	A	C	bias_e_value=1543170	bias_p_value=0.332462	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.0	fisher_strand_p_value=0.801704	frequency=4.667e-01	ks_quality_p_value=0.125931	major_base=A	major_cov=16/16	major_frequency=5.333e-01	minor_base=C	minor_cov=15/13	new_cov=15/13	polymorphism_frequency=4.667e-01	polymorphism_score=92.2	prediction=polymorphism	ref_cov=16/16	total_cov=32/29
RA	154	.	NC_000913	566597	0	T	C	bias_e_value=4618650	bias_p_value=0.995044	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.3	fisher_strand_p_value=1	frequency=5.246e-01	ks_quality_p_value=0.902105	major_base=C	major_cov=17/15	major_frequency=5.246e-01	minor_base=T	minor_cov=16/13	new_cov=17/15	polymorphism_frequency=5.246e-01	polymorphism_score=86.2	prediction=polymorphism	ref_cov=16/13	total_cov=33/28
RA	155	.	NC_000913	566651	0	T	C	bias_e_value=2587010	bias_p_value=0.557346	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.1	fisher_strand_p_value=0.624774	frequency=5.469e-01	ks_quality_p_value=0.356627	major_base=C	major_cov=17/18	major_frequency=5.469e-01	minor_base=T	minor_cov=16/13	new_cov=17/18	polymorphism_frequency=5.469e-01	polymorphism_score=86.5	prediction=polymorphism	ref_cov=16/13	total_cov=33/32
RA	156	.	NC_000913	566728	0	G	T	bias_e_value=2967680	bias_p_value=0.639358	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.4	fisher_strand_p_value=0.572068	frequency=3.051e-01	ks_quality_p_value=0.493486	major_base=G	major_cov=23/18	major_frequency=6.949e-01	minor_base=T	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=3.051e-01	polymorphism_score=51.9	prediction=polymorphism	ref_cov=23/18	total_cov=31/28
RA	157	.	NC_000913	566740	0	A	G	bias_e_value=3449690	bias_p_value=0.743203	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.5	fisher_strand_p_value=0.391125	frequency=3.091e-01	ks_quality_p_value=0.959795	major_base=A	major_cov=21/17	major_frequency=6.909e-01	minor_base=G	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=3.091e-01	polymorphism_score=43.0	prediction=polymorphism	ref_cov=21/17	total_cov=28/27
RA	158	.	NC_000913	566742	0	A	C	bias_e_value=3519690	bias_p_value=0.758285	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.9	fisher_strand_p_value=0.391125	frequency=3.091e-01	ks_quality_p_value=1	major_base=A	major_cov=21/17	major_frequency=6.909e-01	minor_base=C	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=3.091e-01	polymorphism_score=45.8	prediction=polymorphism	ref_cov=21/17	total_cov=28/27
RA	159	.	NC_000913	566756	0	G	C	bias_e_value=3102990	bias_p_value=0.668509	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.1	fisher_strand_p_value=0.547153	frequency=2.679e-01	ks_quality_p_value=0.559495	major_base=G	major_cov=22/19	major_frequency=7.321e-01	minor_base=C	minor_cov=6/9	new_cov=6/9	polymorphism_frequency=2.679e-01	polymorphism_score=53.8	prediction=polymorphism	ref_cov=22/19	total_cov=28/28
RA	160	.	NC_000913	566770	0	C	A	bias_e_value=182885	bias_p_value=0.0394008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.6	fisher_strand_p_value=0.345887	frequency=2.407e-01	ks_quality_p_value=0.0188882	major_base=C	major_cov=23/18	major_frequency=7.593e-01	minor_base=A	minor_cov=5/8	new_cov=5/8	polymorphism_frequency=2.407e-01	polymorphism_score=35.0	prediction=polymorphism	ref_cov=23/18	total_cov=28/26
RA	161	.	NC_000913	568052	0	T	C	bias_e_value=766733	bias_p_value=0.165185	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.4	fisher_strand_p_value=1	frequency=3.023e-01	ks_quality_p_value=0.0388958	major_base=T	major_cov=12/18	major_frequency=6.977e-01	minor_base=C	minor_cov=5/8	new_cov=5/8	polymorphism_frequency=3.023e-01	polymorphism_score=34.4	prediction=polymorphism	ref_cov=12/18	total_cov=17/26
RA	162	.	NC_000913	568067	0	G	A	bias_e_value=3937620	bias_p_value=0.848322	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.4	fisher_strand_p_value=1	frequency=3.000e-01	ks_quality_p_value=0.502532	major_base=G	major_cov=11/17	major_frequency=7.000e-01	minor_base=A	minor_cov=5/7	new_cov=5/7	polymorphism_frequency=3.000e-01	polymorphism_score=30.3	prediction=polymorphism	ref_cov=11/17	total_cov=16/24
RA	163	.	NC_000913	568076	0	A	T	bias_e_value=3251080	bias_p_value=0.700415	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.3	fisher_strand_p_value=1	frequency=2.571e-01	ks_quality_p_value=0.334133	major_base=A	major_cov=10/16	major_frequency=7.429e-01	minor_base=T	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.571e-01	polymorphism_score=26.2	prediction=polymorphism	ref_cov=10/16	total_cov=14/22
RA	164	.	NC_000913	568077	0	A	C	bias_e_value=3100570	bias_p_value=0.667988	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.2	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=0.30569	major_base=A	major_cov=11/16	major_frequency=7.500e-01	minor_base=C	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.500e-01	polymorphism_score=27.0	prediction=polymorphism	ref_cov=11/16	total_cov=14/22
RA	165	.	NC_000913	568079	0	C	T	bias_e_value=838306	bias_p_value=0.180605	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.7	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=0.043734	major_base=C	major_cov=11/16	major_frequency=7.500e-01	minor_base=T	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.500e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=11/16	total_cov=14/22
RA	166	.	NC_000913	568085	0	C	T	bias_e_value=1274080	bias_p_value=0.274489	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.2	fisher_strand_p_value=0.704116	frequency=2.647e-01	ks_quality_p_value=0.109393	major_base=C	major_cov=11/14	major_frequency=7.353e-01	minor_base=T	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.647e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=11/14	total_cov=14/20
RA	167	.	NC_000913	568086	0	G	A	bias_e_value=2867660	bias_p_value=0.61781	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.3	fisher_strand_p_value=0.700273	frequency=2.571e-01	ks_quality_p_value=0.379375	major_base=G	major_cov=12/14	major_frequency=7.429e-01	minor_base=A	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.571e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=12/14	total_cov=15/20
RA	168	.	NC_000913	568088	0	T	C	bias_e_value=3298470	bias_p_value=0.710625	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.9	fisher_strand_p_value=0.700273	frequency=2.571e-01	ks_quality_p_value=0.490619	major_base=T	major_cov=12/14	major_frequency=7.429e-01	minor_base=C	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.571e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=12/14	total_cov=15/20
RA	169	.	NC_000913	568091	0	T	A	bias_e_value=3933600	bias_p_value=0.847458	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.1	fisher_strand_p_value=0.700273	frequency=2.571e-01	ks_quality_p_value=0.715832	major_base=T	major_cov=12/14	major_frequency=7.429e-01	minor_base=A	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.571e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=12/14	total_cov=15/20
RA	170	.	NC_000913	577424	0	G	A	consensus_score=92.2	frequency=1	major_base=A	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	171	.	NC_000913	578331	0	G	T	bias_e_value=1117360	bias_p_value=0.240724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.6	fisher_strand_p_value=1	frequency=2.885e-01	ks_quality_p_value=0.0642899	major_base=G	major_cov=21/16	major_frequency=7.115e-01	minor_base=T	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=2.885e-01	polymorphism_score=39.8	prediction=polymorphism	ref_cov=21/16	total_cov=30/23
RA	172	.	NC_000913	578427	0	G	C	bias_e_value=4512710	bias_p_value=0.97222	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.0	fisher_strand_p_value=0.786746	frequency=3.333e-01	ks_quality_p_value=0.983471	major_base=G	major_cov=18/22	major_frequency=6.667e-01	minor_base=C	minor_cov=8/12	new_cov=8/12	polymorphism_frequency=3.333e-01	polymorphism_score=66.6	prediction=polymorphism	ref_cov=18/22	total_cov=26/34
RA	173	.	NC_000913	578571	0	C	T	bias_e_value=3099950	bias_p_value=0.667855	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.3	fisher_strand_p_value=0.305577	frequency=3.286e-01	ks_quality_p_value=1	major_base=C	major_cov=21/26	major_frequency=6.714e-01	minor_base=T	minor_cov=7/16	new_cov=7/16	polymorphism_frequency=3.286e-01	polymorphism_score=62.3	prediction=polymorphism	ref_cov=21/26	total_cov=29/42
RA	174	.	NC_000913	578574	0	A	C	bias_e_value=4162180	bias_p_value=0.896702	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.9	fisher_strand_p_value=0.618115	frequency=3.521e-01	ks_quality_p_value=0.9406	major_base=A	major_cov=20/26	major_frequency=6.479e-01	minor_base=C	minor_cov=9/16	new_cov=9/16	polymorphism_frequency=3.521e-01	polymorphism_score=73.4	prediction=polymorphism	ref_cov=20/26	total_cov=29/43
RA	175	.	NC_000913	578605	0	T	G	bias_e_value=3658090	bias_p_value=0.788101	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.6	fisher_strand_p_value=0.426249	frequency=3.175e-01	ks_quality_p_value=0.995543	major_base=T	major_cov=20/23	major_frequency=6.825e-01	minor_base=G	minor_cov=7/13	new_cov=7/13	polymorphism_frequency=3.175e-01	polymorphism_score=55.5	prediction=polymorphism	ref_cov=20/23	total_cov=27/36
RA	176	.	NC_000913	578729	0	A	G	bias_e_value=3387730	bias_p_value=0.729854	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.9	fisher_strand_p_value=0.591329	frequency=5.091e-01	ks_quality_p_value=0.612217	major_base=G	major_cov=11/17	major_frequency=5.091e-01	minor_base=A	minor_cov=13/14	new_cov=11/17	polymorphism_frequency=5.091e-01	polymorphism_score=82.4	prediction=polymorphism	ref_cov=13/14	total_cov=24/31
RA	177	.	NC_000913	578809	0	T	C	bias_e_value=1208880	bias_p_value=0.260441	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.0	fisher_strand_p_value=0.397554	frequency=5.849e-01	ks_quality_p_value=0.180155	major_base=C	major_cov=11/20	major_frequency=5.849e-01	minor_base=T	minor_cov=11/11	new_cov=11/20	polymorphism_frequency=5.849e-01	polymorphism_score=65.6	prediction=polymorphism	ref_cov=11/11	total_cov=22/32
RA	178	.	NC_000913	578811	0	T	G	bias_e_value=33501.5	bias_p_value=0.00721759	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.0	fisher_strand_p_value=0.263278	frequency=5.962e-01	ks_quality_p_value=0.00342157	major_base=G	major_cov=11/20	major_frequency=5.962e-01	minor_base=T	minor_cov=11/10	new_cov=11/20	polymorphism_frequency=5.962e-01	polymorphism_score=66.3	prediction=polymorphism	ref_cov=11/10	total_cov=22/30
RA	179	.	NC_000913	578831	0	T	C	bias_e_value=1236510	bias_p_value=0.266394	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.3	fisher_strand_p_value=0.273844	frequency=6.316e-01	ks_quality_p_value=0.269836	major_base=C	major_cov=13/23	major_frequency=6.316e-01	minor_base=T	minor_cov=11/10	new_cov=13/23	polymorphism_frequency=6.316e-01	polymorphism_score=59.4	prediction=polymorphism	ref_cov=11/10	total_cov=24/33
RA	180	.	NC_000913	579004	0	C	T	bias_e_value=3472450	bias_p_value=0.748106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.4	fisher_strand_p_value=0.392585	frequency=4.400e-01	ks_quality_p_value=0.96906	major_base=C	major_cov=17/11	major_frequency=5.600e-01	minor_base=T	minor_cov=10/12	new_cov=10/12	polymorphism_frequency=4.400e-01	polymorphism_score=65.2	prediction=polymorphism	ref_cov=17/11	total_cov=27/23
RA	181	.	NC_000913	579099	0	A	.	bias_e_value=4640030	bias_p_value=0.999651	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.8	fisher_strand_p_value=1	frequency=4.000e-01	ks_quality_p_value=0.973686	major_base=A	major_cov=14/16	major_frequency=6.000e-01	minor_base=.	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=4.000e-01	polymorphism_score=77.9	prediction=polymorphism	ref_cov=14/16	total_cov=23/27
RA	182	.	NC_000913	579127	0	T	C	bias_e_value=2030760	bias_p_value=0.437508	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.5	fisher_strand_p_value=0.764877	frequency=3.556e-01	ks_quality_p_value=0.198141	major_base=T	major_cov=13/16	major_frequency=6.444e-01	minor_base=C	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=3.556e-01	polymorphism_score=47.0	prediction=polymorphism	ref_cov=13/16	total_cov=21/24
RA	183	.	NC_000913	579134	0	T	C	bias_e_value=4097070	bias_p_value=0.882674	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.1	fisher_strand_p_value=1	frequency=3.636e-01	ks_quality_p_value=0.556527	major_base=T	major_cov=13/15	major_frequency=6.364e-01	minor_base=C	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=3.636e-01	polymorphism_score=46.3	prediction=polymorphism	ref_cov=13/15	total_cov=21/23
RA	184	.	NC_000913	579146	0	A	G	bias_e_value=2523350	bias_p_value=0.543633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.1	fisher_strand_p_value=0.386845	frequency=3.878e-01	ks_quality_p_value=0.552676	major_base=A	major_cov=13/17	major_frequency=6.122e-01	minor_base=G	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=3.878e-01	polymorphism_score=51.6	prediction=polymorphism	ref_cov=13/17	total_cov=24/26
RA	185	.	NC_000913	579271	0	G	A	bias_e_value=4231390	bias_p_value=0.911612	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.5	fisher_strand_p_value=0.739699	frequency=4.571e-01	ks_quality_p_value=0.82491	major_base=G	major_cov=8/11	major_frequency=5.429e-01	minor_base=A	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=4.571e-01	polymorphism_score=48.7	prediction=polymorphism	ref_cov=8/11	total_cov=16/19
RA	186	.	NC_000913	579285	0	T	C	bias_e_value=2686540	bias_p_value=0.578789	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.8	fisher_strand_p_value=0.51738	frequency=4.595e-01	ks_quality_p_value=0.458858	major_base=T	major_cov=8/12	major_frequency=5.405e-01	minor_base=C	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=4.595e-01	polymorphism_score=51.8	prediction=polymorphism	ref_cov=8/12	total_cov=17/20
RA	187	.	NC_000913	579385	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.7	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=1	major_base=A	major_cov=9/9	major_frequency=5.000e-01	minor_base=G	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=5.000e-01	polymorphism_score=48.1	prediction=polymorphism	ref_cov=9/9	total_cov=20/17
RA	188	.	NC_000913	579457	0	A	G	bias_e_value=3956420	bias_p_value=0.852374	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.6	fisher_strand_p_value=0.508471	frequency=4.595e-01	ks_quality_p_value=1	major_base=A	major_cov=10/10	major_frequency=5.405e-01	minor_base=G	minor_cov=11/6	new_cov=11/6	polymorphism_frequency=4.595e-01	polymorphism_score=46.1	prediction=polymorphism	ref_cov=10/10	total_cov=21/16
RA	189	.	NC_000913	579502	0	A	G	bias_e_value=118275	bias_p_value=0.0254812	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.7	fisher_strand_p_value=0.238147	frequency=5.333e-01	ks_quality_p_value=0.0163376	major_base=G	major_cov=15/9	major_frequency=5.333e-01	minor_base=A	minor_cov=9/12	new_cov=15/9	polymorphism_frequency=5.333e-01	polymorphism_score=60.6	prediction=polymorphism	ref_cov=9/12	total_cov=24/21
RA	190	.	NC_000913	579540	0	T	C	bias_e_value=4079680	bias_p_value=0.878928	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.4	fisher_strand_p_value=0.566074	frequency=5.745e-01	ks_quality_p_value=0.971953	major_base=C	major_cov=16/11	major_frequency=5.745e-01	minor_base=T	minor_cov=10/10	new_cov=16/11	polymorphism_frequency=5.745e-01	polymorphism_score=56.4	prediction=polymorphism	ref_cov=10/10	total_cov=26/22
RA	191	.	NC_000913	579651	0	C	T	bias_e_value=1224410	bias_p_value=0.263789	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.7	fisher_strand_p_value=0.532542	frequency=3.636e-01	ks_quality_p_value=0.136882	major_base=C	major_cov=16/12	major_frequency=6.364e-01	minor_base=T	minor_cov=7/9	new_cov=7/9	polymorphism_frequency=3.636e-01	polymorphism_score=44.2	prediction=polymorphism	ref_cov=16/12	total_cov=23/21
RA	192	.	NC_000913	579671	0	T	C	bias_e_value=4465360	bias_p_value=0.96202	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.8	fisher_strand_p_value=0.75677	frequency=3.636e-01	ks_quality_p_value=0.97436	major_base=T	major_cov=16/12	major_frequency=6.364e-01	minor_base=C	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=3.636e-01	polymorphism_score=44.7	prediction=polymorphism	ref_cov=16/12	total_cov=24/20
RA	193	.	NC_000913	579717	0	A	C	bias_e_value=3989930	bias_p_value=0.859593	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.1	fisher_strand_p_value=0.768564	frequency=3.958e-01	ks_quality_p_value=0.675694	major_base=A	major_cov=16/13	major_frequency=6.042e-01	minor_base=C	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=3.958e-01	polymorphism_score=62.2	prediction=polymorphism	ref_cov=16/13	total_cov=25/23
RA	194	.	NC_000913	579811	0	C	T	bias_e_value=4076590	bias_p_value=0.878262	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.1	fisher_strand_p_value=0.559643	frequency=4.167e-01	ks_quality_p_value=0.981133	major_base=C	major_cov=17/11	major_frequency=5.833e-01	minor_base=T	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=4.167e-01	polymorphism_score=54.0	prediction=polymorphism	ref_cov=17/11	total_cov=27/21
RA	195	.	NC_000913	580020	0	G	A	bias_e_value=4416350	bias_p_value=0.951461	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.3	fisher_strand_p_value=0.786984	frequency=4.259e-01	ks_quality_p_value=0.895909	major_base=G	major_cov=15/16	major_frequency=5.741e-01	minor_base=A	minor_cov=10/13	new_cov=10/13	polymorphism_frequency=4.259e-01	polymorphism_score=63.9	prediction=polymorphism	ref_cov=15/16	total_cov=26/29
RA	196	.	NC_000913	580115	0	C	T	bias_e_value=4243810	bias_p_value=0.914288	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.7	fisher_strand_p_value=0.617736	frequency=4.697e-01	ks_quality_p_value=0.996626	major_base=C	major_cov=22/13	major_frequency=5.303e-01	minor_base=T	minor_cov=17/14	new_cov=17/14	polymorphism_frequency=4.697e-01	polymorphism_score=89.2	prediction=polymorphism	ref_cov=22/13	total_cov=39/27
RA	197	.	NC_000913	580119	0	A	G	bias_e_value=2331750	bias_p_value=0.502354	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.2	fisher_strand_p_value=0.610252	frequency=4.688e-01	ks_quality_p_value=0.308214	major_base=A	major_cov=22/12	major_frequency=5.312e-01	minor_base=G	minor_cov=17/13	new_cov=17/13	polymorphism_frequency=4.688e-01	polymorphism_score=97.8	prediction=polymorphism	ref_cov=22/12	total_cov=39/26
RA	198	.	NC_000913	580120	0	C	T	bias_e_value=4510650	bias_p_value=0.971778	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.9	fisher_strand_p_value=0.799859	frequency=4.688e-01	ks_quality_p_value=0.965203	major_base=C	major_cov=21/13	major_frequency=5.312e-01	minor_base=T	minor_cov=17/13	new_cov=17/13	polymorphism_frequency=4.688e-01	polymorphism_score=86.1	prediction=polymorphism	ref_cov=21/13	total_cov=39/26
RA	199	.	NC_000913	580302	0	C	T	bias_e_value=4572190	bias_p_value=0.985036	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.5	fisher_strand_p_value=1	frequency=4.182e-01	ks_quality_p_value=0.832066	major_base=C	major_cov=20/12	major_frequency=5.818e-01	minor_base=T	minor_cov=15/8	new_cov=15/8	polymorphism_frequency=4.182e-01	polymorphism_score=65.1	prediction=polymorphism	ref_cov=20/12	total_cov=35/21
RA	200	.	NC_000913	580437	0	A	C	bias_e_value=4449380	bias_p_value=0.958577	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.9	fisher_strand_p_value=0.752382	frequency=2.364e-01	ks_quality_p_value=0.965382	major_base=A	major_cov=23/19	major_frequency=7.636e-01	minor_base=C	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.364e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=23/19	total_cov=30/26
RA	201	.	NC_000913	580830	0	T	A	bias_e_value=3730490	bias_p_value=0.803698	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.6	fisher_strand_p_value=0.443017	frequency=2.500e-01	ks_quality_p_value=1	major_base=T	major_cov=12/15	major_frequency=7.500e-01	minor_base=A	minor_cov=6/3	new_cov=6/3	polymorphism_frequency=2.500e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=12/15	total_cov=19/18
RA	202	.	NC_000913	580831	0	G	A	bias_e_value=3628630	bias_p_value=0.781754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.0	fisher_strand_p_value=0.447032	frequency=2.432e-01	ks_quality_p_value=0.932862	major_base=G	major_cov=13/15	major_frequency=7.568e-01	minor_base=A	minor_cov=6/3	new_cov=6/3	polymorphism_frequency=2.432e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=13/15	total_cov=19/18
RA	203	.	NC_000913	581042	0	T	G	bias_e_value=4245530	bias_p_value=0.91466	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.3	fisher_strand_p_value=0.616419	frequency=3.731e-01	ks_quality_p_value=1	major_base=T	major_cov=24/18	major_frequency=6.269e-01	minor_base=G	minor_cov=16/9	new_cov=16/9	polymorphism_frequency=3.731e-01	polymorphism_score=74.3	prediction=polymorphism	ref_cov=24/18	total_cov=40/27
RA	204	.	NC_000913	581056	0	A	G	bias_e_value=4118270	bias_p_value=0.887243	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.7	fisher_strand_p_value=0.599683	frequency=3.333e-01	ks_quality_p_value=0.941194	major_base=A	major_cov=24/20	major_frequency=6.667e-01	minor_base=G	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=3.333e-01	polymorphism_score=52.9	prediction=polymorphism	ref_cov=24/20	total_cov=38/28
RA	205	.	NC_000913	581073	0	G	A	bias_e_value=3698960	bias_p_value=0.796905	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.9	fisher_strand_p_value=0.568538	frequency=3.000e-01	ks_quality_p_value=0.764714	major_base=G	major_cov=23/19	major_frequency=7.000e-01	minor_base=A	minor_cov=12/6	new_cov=12/6	polymorphism_frequency=3.000e-01	polymorphism_score=40.3	prediction=polymorphism	ref_cov=23/19	total_cov=35/25
RA	206	.	NC_000913	581118	0	T	C	bias_e_value=4489660	bias_p_value=0.967255	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.8	fisher_strand_p_value=0.755254	frequency=2.167e-01	ks_quality_p_value=1	major_base=T	major_cov=25/22	major_frequency=7.833e-01	minor_base=C	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=2.167e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=25/22	total_cov=33/27
RA	207	.	NC_000913	581127	0	G	A	bias_e_value=4638670	bias_p_value=0.999358	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.9	fisher_strand_p_value=1	frequency=2.222e-01	ks_quality_p_value=0.964369	major_base=G	major_cov=26/23	major_frequency=7.778e-01	minor_base=A	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=2.222e-01	polymorphism_score=30.6	prediction=polymorphism	ref_cov=26/23	total_cov=34/29
RA	208	.	NC_000913	581133	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.7	fisher_strand_p_value=1	frequency=2.344e-01	ks_quality_p_value=1	major_base=A	major_cov=26/23	major_frequency=7.656e-01	minor_base=G	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=2.344e-01	polymorphism_score=33.9	prediction=polymorphism	ref_cov=26/23	total_cov=34/30
RA	209	.	NC_000913	581227	0	A	C	bias_e_value=2291170	bias_p_value=0.493612	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.3	fisher_strand_p_value=0.297331	frequency=2.128e-01	ks_quality_p_value=0.615136	major_base=A	major_cov=19/18	major_frequency=7.872e-01	minor_base=C	minor_cov=3/7	new_cov=3/7	polymorphism_frequency=2.128e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=19/18	total_cov=22/25
RA	210	.	NC_000913	585900	0	C	T	consensus_score=74.9	frequency=1	major_base=T	major_cov=14/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/7
RA	211	.	NC_000913	587830	0	C	T	consensus_score=132.4	frequency=1	major_base=T	major_cov=23/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/16
RA	212	.	NC_000913	587879	0	C	T	consensus_score=146.9	frequency=1	major_base=T	major_cov=24/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/17
RA	213	.	NC_000913	590620	0	G	A	consensus_score=159.6	frequency=1	major_base=A	major_cov=23/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/22
RA	214	.	NC_000913	601732	0	G	A	consensus_score=142.5	frequency=1	major_base=A	major_cov=18/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/23
RA	215	.	NC_000913	603023	0	G	A	bias_e_value=4641440	bias_p_value=0.999955	consensus_score=150.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990531	major_base=A	major_cov=20/23	major_frequency=9.773e-01	minor_base=G	minor_cov=0/1	new_cov=20/23	polymorphism_frequency=9.773e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=20/24
RA	216	.	NC_000913	603208	0	G	A	consensus_score=163.5	frequency=1	major_base=A	major_cov=21/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	217	.	NC_000913	615848	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=135.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/21	major_frequency=9.762e-01	minor_base=C	minor_cov=0/1	new_cov=20/21	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/22
RA	218	.	NC_000913	624510	0	C	T	consensus_score=66.8	frequency=1	major_base=T	major_cov=14/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	219	.	NC_000913	631633	0	G	A	bias_e_value=3853940	bias_p_value=0.830296	consensus_score=153.4	fisher_strand_p_value=0.477273	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/23	major_frequency=9.773e-01	minor_base=G	minor_cov=1/0	new_cov=20/23	polymorphism_frequency=9.773e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=1/0	total_cov=21/23
RA	220	.	NC_000913	642476	0	G	A	consensus_score=86.0	frequency=1	major_base=A	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	221	.	NC_000913	668829	0	C	T	consensus_score=133.9	frequency=1	major_base=T	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	222	.	NC_000913	675108	0	G	A	bias_e_value=3454310	bias_p_value=0.744199	consensus_score=124.5	fisher_strand_p_value=0.416667	frequency=1	ks_quality_p_value=0.903402	major_base=A	major_cov=14/21	major_frequency=9.722e-01	minor_base=C	minor_cov=1/0	new_cov=14/21	polymorphism_frequency=9.722e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	223	.	NC_000913	740893	0	G	A	bias_e_value=2007620	bias_p_value=0.432522	consensus_score=128.7	fisher_strand_p_value=0.14936	frequency=1	ks_quality_p_value=0.99708	major_base=A	major_cov=13/23	major_frequency=9.474e-01	minor_base=C	minor_cov=2/0	new_cov=13/23	polymorphism_frequency=9.474e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	224	.	NC_000913	793557	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=139.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/24	major_frequency=9.767e-01	minor_base=T	minor_cov=0/1	new_cov=18/24	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/25
RA	225	.	NC_000913	808673	0	G	A	consensus_score=137.8	frequency=1	major_base=A	major_cov=22/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/19
RA	226	.	NC_000913	817297	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=126.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/19	major_frequency=9.744e-01	minor_base=G	minor_cov=0/1	new_cov=19/19	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	227	.	NC_000913	846078	0	C	T	consensus_score=188.3	frequency=1	major_base=T	major_cov=21/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/30
RA	228	.	NC_000913	849617	0	C	T	bias_e_value=1296840	bias_p_value=0.279393	consensus_score=54.2	fisher_strand_p_value=0.0789474	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/4	major_frequency=9.000e-01	minor_base=C	minor_cov=0/2	new_cov=14/4	polymorphism_frequency=9.000e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/2	total_cov=14/6
RA	229	.	NC_000913	862786	0	C	T	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=101.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997704	major_base=T	major_cov=12/17	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=12/17	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	230	.	NC_000913	987152	0	G	T	consensus_score=34.1	frequency=1	major_base=T	major_cov=3/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/8
RA	231	.	NC_000913	1015227	0	G	A	consensus_score=123.1	frequency=1	major_base=A	major_cov=13/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/22
RA	232	.	NC_000913	1036927	0	T	A	bias_e_value=45.1483	bias_p_value=9.72677e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.4	fisher_strand_p_value=6.37141e-07	frequency=3.636e-01	ks_quality_p_value=1	major_base=T	major_cov=21/7	major_frequency=6.364e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=3.636e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=21/7	total_cov=21/23
RA	233	.	NC_000913	1037526	0	G	A	consensus_score=146.8	frequency=1	major_base=A	major_cov=19/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/22
RA	234	.	NC_000913	1065815	0	G	A	bias_e_value=3910930	bias_p_value=0.842573	consensus_score=101.8	fisher_strand_p_value=0.496212	frequency=1	ks_quality_p_value=0.996098	major_base=A	major_cov=17/14	major_frequency=9.394e-01	minor_base=G	minor_cov=2/0	new_cov=17/14	polymorphism_frequency=9.394e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=2/0	total_cov=19/15
RA	235	.	NC_000913	1077066	0	G	A	consensus_score=185.0	frequency=1	major_base=A	major_cov=22/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	236	.	NC_000913	1077466	0	G	A	consensus_score=85.3	frequency=1	major_base=A	major_cov=10/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/16
RA	237	.	NC_000913	1196220	0	C	T	consensus_score=39.9	frequency=1	major_base=T	major_cov=3/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/10
RA	238	.	NC_000913	1196232	0	C	T	consensus_score=31.2	frequency=1	major_base=T	major_cov=2/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/9
RA	239	.	NC_000913	1196245	0	T	C	consensus_score=23.3	frequency=1	major_base=C	major_cov=1/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/8
RA	240	.	NC_000913	1196247	0	A	G	consensus_score=22.1	frequency=1	major_base=G	major_cov=1/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/8
RA	241	.	NC_000913	1196277	0	C	T	consensus_score=10.3	frequency=1	major_base=T	major_cov=1/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/5
RA	242	.	NC_000913	1196280	0	G	C	consensus_score=12.8	frequency=1	major_base=C	major_cov=1/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/5
RA	243	.	NC_000913	1196283	0	A	G	consensus_score=11.6	frequency=1	major_base=G	major_cov=1/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/5
RA	244	.	NC_000913	1290881	0	C	T	consensus_score=99.5	frequency=1	major_base=T	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	245	.	NC_000913	1337394	0	A	G	consensus_score=78.1	frequency=1	major_base=G	major_cov=13/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	246	.	NC_000913	1353758	0	T	A	consensus_score=140.9	frequency=1	major_base=A	major_cov=25/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/15
RA	247	.	NC_000913	1412163	0	C	T	consensus_score=126.1	frequency=1	major_base=T	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	248	.	NC_000913	1412294	0	C	T	bias_e_value=3827840	bias_p_value=0.824672	consensus_score=119.6	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=0.998219	major_base=T	major_cov=15/18	major_frequency=9.706e-01	minor_base=C	minor_cov=1/0	new_cov=15/18	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=16/19
RA	249	.	NC_000913	1423244	0	G	C	bias_e_value=3607100	bias_p_value=0.777117	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.3	fisher_strand_p_value=0.716427	frequency=2.308e-01	ks_quality_p_value=0.574735	major_base=G	major_cov=14/16	major_frequency=7.692e-01	minor_base=C	minor_cov=5/4	new_cov=5/4	polymorphism_frequency=2.308e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=14/16	total_cov=19/20
RA	250	.	NC_000913	1423272	0	C	T	bias_e_value=3708300	bias_p_value=0.798918	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.0	fisher_strand_p_value=0.74171	frequency=3.415e-01	ks_quality_p_value=0.589439	major_base=C	major_cov=11/16	major_frequency=6.585e-01	minor_base=T	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=3.415e-01	polymorphism_score=35.3	prediction=polymorphism	ref_cov=11/16	total_cov=18/24
RA	251	.	NC_000913	1423273	0	G	A	bias_e_value=4461030	bias_p_value=0.961087	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.9	fisher_strand_p_value=0.754009	frequency=3.571e-01	ks_quality_p_value=0.973892	major_base=G	major_cov=11/16	major_frequency=6.429e-01	minor_base=A	minor_cov=7/8	new_cov=7/8	polymorphism_frequency=3.571e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=11/16	total_cov=18/24
RA	252	.	NC_000913	1423283	0	A	C	bias_e_value=4391220	bias_p_value=0.946047	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.8	fisher_strand_p_value=0.75418	frequency=3.333e-01	ks_quality_p_value=0.914947	major_base=A	major_cov=12/18	major_frequency=6.667e-01	minor_base=C	minor_cov=7/8	new_cov=7/8	polymorphism_frequency=3.333e-01	polymorphism_score=45.5	prediction=polymorphism	ref_cov=12/18	total_cov=19/26
RA	253	.	NC_000913	1423284	0	A	C	bias_e_value=2283210	bias_p_value=0.491897	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.8	fisher_strand_p_value=0.75418	frequency=3.333e-01	ks_quality_p_value=0.241177	major_base=A	major_cov=12/18	major_frequency=6.667e-01	minor_base=C	minor_cov=7/8	new_cov=7/8	polymorphism_frequency=3.333e-01	polymorphism_score=41.0	prediction=polymorphism	ref_cov=12/18	total_cov=19/26
RA	254	.	NC_000913	1423338	0	G	C	bias_e_value=4206080	bias_p_value=0.90616	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.2	fisher_strand_p_value=1	frequency=4.043e-01	ks_quality_p_value=0.599345	major_base=G	major_cov=11/17	major_frequency=5.957e-01	minor_base=C	minor_cov=8/11	new_cov=8/11	polymorphism_frequency=4.043e-01	polymorphism_score=71.8	prediction=polymorphism	ref_cov=11/17	total_cov=19/28
RA	255	.	NC_000913	1423404	0	G	T	bias_e_value=2687210	bias_p_value=0.578934	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.8	fisher_strand_p_value=1	frequency=3.448e-01	ks_quality_p_value=0.237505	major_base=G	major_cov=16/22	major_frequency=6.552e-01	minor_base=T	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=3.448e-01	polymorphism_score=54.9	prediction=polymorphism	ref_cov=16/22	total_cov=25/33
RA	256	.	NC_000913	1428963	0	G	T	bias_e_value=1894580	bias_p_value=0.40817	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.1	fisher_strand_p_value=0.350349	frequency=2.281e-01	ks_quality_p_value=0.389381	major_base=G	major_cov=23/21	major_frequency=7.719e-01	minor_base=T	minor_cov=9/4	new_cov=9/4	polymorphism_frequency=2.281e-01	polymorphism_score=32.6	prediction=polymorphism	ref_cov=23/21	total_cov=32/25
RA	257	.	NC_000913	1428966	0	T	G	bias_e_value=1729800	bias_p_value=0.372669	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.3	fisher_strand_p_value=0.226591	frequency=2.456e-01	ks_quality_p_value=0.525926	major_base=T	major_cov=22/21	major_frequency=7.544e-01	minor_base=G	minor_cov=10/4	new_cov=10/4	polymorphism_frequency=2.456e-01	polymorphism_score=33.2	prediction=polymorphism	ref_cov=22/21	total_cov=32/25
RA	258	.	NC_000913	1428978	0	G	A	bias_e_value=3081330	bias_p_value=0.663843	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.4	fisher_strand_p_value=0.541559	frequency=2.500e-01	ks_quality_p_value=0.558035	major_base=G	major_cov=22/20	major_frequency=7.500e-01	minor_base=A	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=2.500e-01	polymorphism_score=35.6	prediction=polymorphism	ref_cov=22/20	total_cov=31/25
RA	259	.	NC_000913	1429021	0	T	A	bias_e_value=2654010	bias_p_value=0.571782	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.4	fisher_strand_p_value=1	frequency=3.061e-01	ks_quality_p_value=0.232565	major_base=T	major_cov=19/15	major_frequency=6.939e-01	minor_base=A	minor_cov=9/6	new_cov=9/6	polymorphism_frequency=3.061e-01	polymorphism_score=45.7	prediction=polymorphism	ref_cov=19/15	total_cov=29/21
RA	260	.	NC_000913	1429022	0	T	A	bias_e_value=3406320	bias_p_value=0.73386	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.0	fisher_strand_p_value=0.763481	frequency=3.200e-01	ks_quality_p_value=0.479364	major_base=T	major_cov=19/15	major_frequency=6.800e-01	minor_base=A	minor_cov=10/6	new_cov=10/6	polymorphism_frequency=3.200e-01	polymorphism_score=46.9	prediction=polymorphism	ref_cov=19/15	total_cov=29/21
RA	261	.	NC_000913	1429024	0	A	C	bias_e_value=3813450	bias_p_value=0.821571	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.8	fisher_strand_p_value=0.763481	frequency=3.200e-01	ks_quality_p_value=0.60993	major_base=A	major_cov=19/15	major_frequency=6.800e-01	minor_base=C	minor_cov=10/6	new_cov=10/6	polymorphism_frequency=3.200e-01	polymorphism_score=40.7	prediction=polymorphism	ref_cov=19/15	total_cov=29/21
RA	262	.	NC_000913	1429027	0	C	T	bias_e_value=4378620	bias_p_value=0.943331	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.7	fisher_strand_p_value=0.768119	frequency=3.137e-01	ks_quality_p_value=0.888948	major_base=C	major_cov=20/15	major_frequency=6.863e-01	minor_base=T	minor_cov=10/6	new_cov=10/6	polymorphism_frequency=3.137e-01	polymorphism_score=40.9	prediction=polymorphism	ref_cov=20/15	total_cov=30/21
RA	263	.	NC_000913	1429069	0	T	A	bias_e_value=140831	bias_p_value=0.0303408	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.8	fisher_strand_p_value=0.782256	frequency=4.000e-01	ks_quality_p_value=0.00611525	major_base=T	major_cov=21/12	major_frequency=6.000e-01	minor_base=A	minor_cov=13/9	new_cov=13/9	polymorphism_frequency=4.000e-01	polymorphism_score=73.2	prediction=polymorphism	ref_cov=21/12	total_cov=35/24
RA	264	.	NC_000913	1429072	0	A	C	bias_e_value=167316	bias_p_value=0.0360467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.5	fisher_strand_p_value=0.789656	frequency=3.898e-01	ks_quality_p_value=0.00743787	major_base=A	major_cov=22/14	major_frequency=6.102e-01	minor_base=C	minor_cov=13/10	new_cov=13/10	polymorphism_frequency=3.898e-01	polymorphism_score=75.8	prediction=polymorphism	ref_cov=22/14	total_cov=35/24
RA	265	.	NC_000913	1429111	0	A	C	bias_e_value=580819	bias_p_value=0.125132	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.1	fisher_strand_p_value=0.809684	frequency=4.429e-01	ks_quality_p_value=0.0335552	major_base=A	major_cov=24/15	major_frequency=5.571e-01	minor_base=C	minor_cov=18/13	new_cov=18/13	polymorphism_frequency=4.429e-01	polymorphism_score=106.9	prediction=polymorphism	ref_cov=24/15	total_cov=42/28
RA	266	.	NC_000913	1429114	0	C	T	bias_e_value=982223	bias_p_value=0.211611	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.4	fisher_strand_p_value=1	frequency=4.225e-01	ks_quality_p_value=0.0539989	major_base=C	major_cov=25/16	major_frequency=5.775e-01	minor_base=T	minor_cov=18/12	new_cov=18/12	polymorphism_frequency=4.225e-01	polymorphism_score=90.4	prediction=polymorphism	ref_cov=25/16	total_cov=43/28
RA	267	.	NC_000913	1429126	0	A	C	bias_e_value=4578470	bias_p_value=0.986388	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.7	fisher_strand_p_value=1	frequency=4.583e-01	ks_quality_p_value=0.839604	major_base=A	major_cov=24/15	major_frequency=5.417e-01	minor_base=C	minor_cov=20/13	new_cov=20/13	polymorphism_frequency=4.583e-01	polymorphism_score=95.0	prediction=polymorphism	ref_cov=24/15	total_cov=44/28
RA	268	.	NC_000913	1429128	0	A	G	bias_e_value=3903200	bias_p_value=0.840907	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.9	fisher_strand_p_value=0.812166	frequency=4.444e-01	ks_quality_p_value=0.605689	major_base=A	major_cov=25/15	major_frequency=5.556e-01	minor_base=G	minor_cov=19/13	new_cov=19/13	polymorphism_frequency=4.444e-01	polymorphism_score=99.8	prediction=polymorphism	ref_cov=25/15	total_cov=44/28
RA	269	.	NC_000913	1429160	0	C	G	bias_e_value=2766020	bias_p_value=0.595912	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.2	fisher_strand_p_value=0.481761	frequency=5.000e-01	ks_quality_p_value=0.517941	major_base=G	major_cov=21/17	major_frequency=5.000e-01	minor_base=C	minor_cov=25/13	new_cov=21/17	polymorphism_frequency=5.000e-01	polymorphism_score=137.3	prediction=polymorphism	ref_cov=25/13	total_cov=46/31
RA	270	.	NC_000913	1429164	0	C	G	bias_e_value=1104840	bias_p_value=0.238027	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.3	fisher_strand_p_value=0.641702	frequency=4.737e-01	ks_quality_p_value=0.0986594	major_base=C	major_cov=25/15	major_frequency=5.263e-01	minor_base=G	minor_cov=20/16	new_cov=20/16	polymorphism_frequency=4.737e-01	polymorphism_score=137.8	prediction=polymorphism	ref_cov=25/15	total_cov=45/31
RA	271	.	NC_000913	1429171	0	A	G	bias_e_value=3729130	bias_p_value=0.803406	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.6	fisher_strand_p_value=0.486646	frequency=4.737e-01	ks_quality_p_value=0.909612	major_base=A	major_cov=25/15	major_frequency=5.263e-01	minor_base=G	minor_cov=19/17	new_cov=19/17	polymorphism_frequency=4.737e-01	polymorphism_score=114.4	prediction=polymorphism	ref_cov=25/15	total_cov=44/32
RA	272	.	NC_000913	1429204	0	C	T	bias_e_value=40917.8	bias_p_value=0.00881534	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.1	fisher_strand_p_value=0.165268	frequency=4.474e-01	ks_quality_p_value=0.00685316	major_base=C	major_cov=27/15	major_frequency=5.526e-01	minor_base=T	minor_cov=16/18	new_cov=16/18	polymorphism_frequency=4.474e-01	polymorphism_score=100.3	prediction=polymorphism	ref_cov=27/15	total_cov=43/35
RA	273	.	NC_000913	1429207	0	T	G	bias_e_value=19162.2	bias_p_value=0.00412832	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.8	fisher_strand_p_value=0.0221831	frequency=4.935e-01	ks_quality_p_value=0.0215218	major_base=T	major_cov=27/12	major_frequency=5.065e-01	minor_base=G	minor_cov=16/22	new_cov=16/22	polymorphism_frequency=4.935e-01	polymorphism_score=109.7	prediction=polymorphism	ref_cov=27/12	total_cov=43/34
RA	274	.	NC_000913	1429225	0	C	T	bias_e_value=235839	bias_p_value=0.0508092	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.8	fisher_strand_p_value=0.10104	frequency=4.416e-01	ks_quality_p_value=0.0878453	major_base=C	major_cov=30/13	major_frequency=5.584e-01	minor_base=T	minor_cov=17/17	new_cov=17/17	polymorphism_frequency=4.416e-01	polymorphism_score=98.1	prediction=polymorphism	ref_cov=30/13	total_cov=47/34
RA	275	.	NC_000913	1429228	0	T	C	bias_e_value=1858.01	bias_p_value=0.000400291	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.7	fisher_strand_p_value=0.491085	frequency=4.125e-01	ks_quality_p_value=7.24995e-05	major_base=T	major_cov=29/18	major_frequency=5.875e-01	minor_base=C	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=4.125e-01	polymorphism_score=100.6	prediction=polymorphism	ref_cov=29/18	total_cov=46/34
RA	276	.	NC_000913	1429231	0	T	C	bias_e_value=171329	bias_p_value=0.0369111	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.5	fisher_strand_p_value=0.365411	frequency=4.074e-01	ks_quality_p_value=0.0165351	major_base=T	major_cov=30/18	major_frequency=5.926e-01	minor_base=C	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=4.074e-01	polymorphism_score=100.6	prediction=polymorphism	ref_cov=30/18	total_cov=47/34
RA	277	.	NC_000913	1429235	0	T	C	bias_e_value=93937.5	bias_p_value=0.0202379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.5	fisher_strand_p_value=0.488753	frequency=4.000e-01	ks_quality_p_value=0.0060714	major_base=T	major_cov=30/18	major_frequency=6.000e-01	minor_base=C	minor_cov=17/15	new_cov=17/15	polymorphism_frequency=4.000e-01	polymorphism_score=100.2	prediction=polymorphism	ref_cov=30/18	total_cov=47/34
RA	278	.	NC_000913	1429236	0	T	A	bias_e_value=289892	bias_p_value=0.0624546	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.5	fisher_strand_p_value=0.161757	frequency=4.286e-01	ks_quality_p_value=0.0705442	major_base=T	major_cov=30/14	major_frequency=5.714e-01	minor_base=A	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=4.286e-01	polymorphism_score=115.4	prediction=polymorphism	ref_cov=30/14	total_cov=47/34
RA	279	.	NC_000913	1429240	0	G	T	bias_e_value=1584.61	bias_p_value=0.000341389	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.6	fisher_strand_p_value=0.365411	frequency=4.074e-01	ks_quality_p_value=8.18261e-05	major_base=G	major_cov=30/18	major_frequency=5.926e-01	minor_base=T	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=4.074e-01	polymorphism_score=97.8	prediction=polymorphism	ref_cov=30/18	total_cov=47/34
RA	280	.	NC_000913	1429243	0	A	C	bias_e_value=62936.6	bias_p_value=0.0135591	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.1	fisher_strand_p_value=0.365411	frequency=4.074e-01	ks_quality_p_value=0.00509232	major_base=A	major_cov=30/18	major_frequency=5.926e-01	minor_base=C	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=4.074e-01	polymorphism_score=114.5	prediction=polymorphism	ref_cov=30/18	total_cov=47/34
RA	281	.	NC_000913	1429246	0	A	T	bias_e_value=232558	bias_p_value=0.0501025	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.0	fisher_strand_p_value=0.0706355	frequency=4.500e-01	ks_quality_p_value=0.123544	major_base=A	major_cov=30/14	major_frequency=5.500e-01	minor_base=T	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=4.500e-01	polymorphism_score=113.8	prediction=polymorphism	ref_cov=30/14	total_cov=47/34
RA	282	.	NC_000913	1429249	0	C	T	bias_e_value=2043150	bias_p_value=0.440177	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.7	fisher_strand_p_value=0.491085	frequency=4.125e-01	ks_quality_p_value=0.311499	major_base=C	major_cov=29/18	major_frequency=5.875e-01	minor_base=T	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=4.125e-01	polymorphism_score=97.3	prediction=polymorphism	ref_cov=29/18	total_cov=46/34
RA	283	.	NC_000913	1429252	0	G	A	bias_e_value=1376160	bias_p_value=0.296481	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.3	fisher_strand_p_value=0.491085	frequency=4.125e-01	ks_quality_p_value=0.174698	major_base=G	major_cov=29/18	major_frequency=5.875e-01	minor_base=A	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=4.125e-01	polymorphism_score=97.2	prediction=polymorphism	ref_cov=29/18	total_cov=46/34
RA	284	.	NC_000913	1429255	0	G	A	bias_e_value=454052	bias_p_value=0.0978212	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.9	fisher_strand_p_value=0.491085	frequency=4.125e-01	ks_quality_p_value=0.0405081	major_base=G	major_cov=29/18	major_frequency=5.875e-01	minor_base=A	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=4.125e-01	polymorphism_score=96.0	prediction=polymorphism	ref_cov=29/18	total_cov=46/34
RA	285	.	NC_000913	1429258	0	A	G	bias_e_value=2868430	bias_p_value=0.617976	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.3	fisher_strand_p_value=0.491524	frequency=4.177e-01	ks_quality_p_value=0.540749	major_base=A	major_cov=28/18	major_frequency=5.823e-01	minor_base=G	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=4.177e-01	polymorphism_score=96.0	prediction=polymorphism	ref_cov=28/18	total_cov=47/34
RA	286	.	NC_000913	1429261	0	T	C	bias_e_value=655119	bias_p_value=0.141139	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.6	fisher_strand_p_value=0.365411	frequency=4.074e-01	ks_quality_p_value=0.0867743	major_base=T	major_cov=30/18	major_frequency=5.926e-01	minor_base=C	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=4.074e-01	polymorphism_score=93.0	prediction=polymorphism	ref_cov=30/18	total_cov=47/34
RA	287	.	NC_000913	1429273	0	T	C	bias_e_value=3282550	bias_p_value=0.707195	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.0	fisher_strand_p_value=0.352365	frequency=4.286e-01	ks_quality_p_value=0.965961	major_base=T	major_cov=28/16	major_frequency=5.714e-01	minor_base=C	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=4.286e-01	polymorphism_score=98.5	prediction=polymorphism	ref_cov=28/16	total_cov=45/32
RA	288	.	NC_000913	1429291	0	T	A	bias_e_value=2440340	bias_p_value=0.525749	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.1	fisher_strand_p_value=0.642168	frequency=4.156e-01	ks_quality_p_value=0.315195	major_base=T	major_cov=27/18	major_frequency=5.844e-01	minor_base=A	minor_cov=17/15	new_cov=17/15	polymorphism_frequency=4.156e-01	polymorphism_score=105.3	prediction=polymorphism	ref_cov=27/18	total_cov=44/33
RA	289	.	NC_000913	1429297	0	C	G	bias_e_value=1178650	bias_p_value=0.253929	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.4	fisher_strand_p_value=0.473773	frequency=4.110e-01	ks_quality_p_value=0.145992	major_base=C	major_cov=27/16	major_frequency=5.890e-01	minor_base=G	minor_cov=16/14	new_cov=16/14	polymorphism_frequency=4.110e-01	polymorphism_score=104.0	prediction=polymorphism	ref_cov=27/16	total_cov=43/31
RA	290	.	NC_000913	1429300	0	T	G	bias_e_value=1272800	bias_p_value=0.274212	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.7	fisher_strand_p_value=0.632758	frequency=4.110e-01	ks_quality_p_value=0.121559	major_base=T	major_cov=26/17	major_frequency=5.890e-01	minor_base=G	minor_cov=16/14	new_cov=16/14	polymorphism_frequency=4.110e-01	polymorphism_score=78.7	prediction=polymorphism	ref_cov=26/17	total_cov=42/31
RA	291	.	NC_000913	1429319	0	G	T	bias_e_value=531149	bias_p_value=0.114431	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.2	fisher_strand_p_value=0.811227	frequency=4.384e-01	ks_quality_p_value=0.0298887	major_base=G	major_cov=25/16	major_frequency=5.616e-01	minor_base=T	minor_cov=18/14	new_cov=18/14	polymorphism_frequency=4.384e-01	polymorphism_score=102.1	prediction=polymorphism	ref_cov=25/16	total_cov=43/30
RA	292	.	NC_000913	1429345	0	T	G	bias_e_value=4201970	bias_p_value=0.905275	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.4	fisher_strand_p_value=1	frequency=4.324e-01	ks_quality_p_value=0.59762	major_base=T	major_cov=24/18	major_frequency=5.676e-01	minor_base=G	minor_cov=18/14	new_cov=18/14	polymorphism_frequency=4.324e-01	polymorphism_score=86.9	prediction=polymorphism	ref_cov=24/18	total_cov=42/32
RA	293	.	NC_000913	1429353	0	C	T	bias_e_value=4518860	bias_p_value=0.973545	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.3	fisher_strand_p_value=0.804604	frequency=3.881e-01	ks_quality_p_value=0.968147	major_base=C	major_cov=22/19	major_frequency=6.119e-01	minor_base=T	minor_cov=15/11	new_cov=15/11	polymorphism_frequency=3.881e-01	polymorphism_score=68.4	prediction=polymorphism	ref_cov=22/19	total_cov=37/30
RA	294	.	NC_000913	1429354	0	A	G	bias_e_value=4292800	bias_p_value=0.924843	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.1	fisher_strand_p_value=1	frequency=3.971e-01	ks_quality_p_value=0.638257	major_base=A	major_cov=23/18	major_frequency=6.029e-01	minor_base=G	minor_cov=15/12	new_cov=15/12	polymorphism_frequency=3.971e-01	polymorphism_score=71.4	prediction=polymorphism	ref_cov=23/18	total_cov=38/30
RA	295	.	NC_000913	1429360	0	C	T	bias_e_value=4000110	bias_p_value=0.861787	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.0	fisher_strand_p_value=0.803695	frequency=4.118e-01	ks_quality_p_value=0.650345	major_base=C	major_cov=22/18	major_frequency=5.882e-01	minor_base=T	minor_cov=17/11	new_cov=17/11	polymorphism_frequency=4.118e-01	polymorphism_score=81.3	prediction=polymorphism	ref_cov=22/18	total_cov=39/29
RA	296	.	NC_000913	1429364	0	T	C	bias_e_value=3124190	bias_p_value=0.673077	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.1	fisher_strand_p_value=0.624154	frequency=4.179e-01	ks_quality_p_value=0.496686	major_base=T	major_cov=21/18	major_frequency=5.821e-01	minor_base=C	minor_cov=17/11	new_cov=17/11	polymorphism_frequency=4.179e-01	polymorphism_score=81.5	prediction=polymorphism	ref_cov=21/18	total_cov=38/29
RA	297	.	NC_000913	1429404	0	C	T	bias_e_value=913322	bias_p_value=0.196766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.9	fisher_strand_p_value=0.341745	frequency=4.054e-01	ks_quality_p_value=0.143368	major_base=C	major_cov=24/20	major_frequency=5.946e-01	minor_base=T	minor_cov=20/10	new_cov=20/10	polymorphism_frequency=4.054e-01	polymorphism_score=88.0	prediction=polymorphism	ref_cov=24/20	total_cov=44/31
RA	298	.	NC_000913	1429416	0	A	G	bias_e_value=342297	bias_p_value=0.0737446	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.6	fisher_strand_p_value=0.0951533	frequency=3.291e-01	ks_quality_p_value=0.147089	major_base=A	major_cov=28/25	major_frequency=6.709e-01	minor_base=G	minor_cov=19/7	new_cov=19/7	polymorphism_frequency=3.291e-01	polymorphism_score=79.4	prediction=polymorphism	ref_cov=28/25	total_cov=47/32
RA	299	.	NC_000913	1429417	0	C	T	bias_e_value=1467730	bias_p_value=0.316209	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.5	fisher_strand_p_value=0.0951533	frequency=3.291e-01	ks_quality_p_value=0.987657	major_base=C	major_cov=28/25	major_frequency=6.709e-01	minor_base=T	minor_cov=19/7	new_cov=19/7	polymorphism_frequency=3.291e-01	polymorphism_score=65.5	prediction=polymorphism	ref_cov=28/25	total_cov=47/32
RA	300	.	NC_000913	1429425	0	C	A	bias_e_value=483423	bias_p_value=0.104149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.1	fisher_strand_p_value=0.130376	frequency=3.117e-01	ks_quality_p_value=0.165099	major_base=C	major_cov=29/24	major_frequency=6.883e-01	minor_base=A	minor_cov=18/6	new_cov=18/6	polymorphism_frequency=3.117e-01	polymorphism_score=67.9	prediction=polymorphism	ref_cov=29/24	total_cov=47/30
RA	301	.	NC_000913	1429435	0	G	A	bias_e_value=789299	bias_p_value=0.170047	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.8	fisher_strand_p_value=0.124447	frequency=3.333e-01	ks_quality_p_value=0.324652	major_base=G	major_cov=26/22	major_frequency=6.667e-01	minor_base=A	minor_cov=18/6	new_cov=18/6	polymorphism_frequency=3.333e-01	polymorphism_score=66.2	prediction=polymorphism	ref_cov=26/22	total_cov=44/28
RA	302	.	NC_000913	1429442	0	A	G	bias_e_value=1635770	bias_p_value=0.352411	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.7	fisher_strand_p_value=0.124447	frequency=3.333e-01	ks_quality_p_value=0.882497	major_base=A	major_cov=26/22	major_frequency=6.667e-01	minor_base=G	minor_cov=18/6	new_cov=18/6	polymorphism_frequency=3.333e-01	polymorphism_score=64.8	prediction=polymorphism	ref_cov=26/22	total_cov=44/28
RA	303	.	NC_000913	1429444	0	T	C	bias_e_value=943430	bias_p_value=0.203253	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.6	fisher_strand_p_value=0.124447	frequency=3.333e-01	ks_quality_p_value=0.411112	major_base=T	major_cov=26/22	major_frequency=6.667e-01	minor_base=C	minor_cov=18/6	new_cov=18/6	polymorphism_frequency=3.333e-01	polymorphism_score=67.3	prediction=polymorphism	ref_cov=26/22	total_cov=44/28
RA	304	.	NC_000913	1429453	0	C	T	bias_e_value=755729	bias_p_value=0.162815	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.8	fisher_strand_p_value=0.191103	frequency=3.143e-01	ks_quality_p_value=0.199723	major_base=C	major_cov=26/22	major_frequency=6.857e-01	minor_base=T	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.143e-01	polymorphism_score=59.2	prediction=polymorphism	ref_cov=26/22	total_cov=42/28
RA	305	.	NC_000913	1429454	0	A	G	bias_e_value=1052590	bias_p_value=0.226771	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.8	fisher_strand_p_value=0.191103	frequency=3.143e-01	ks_quality_p_value=0.310192	major_base=A	major_cov=26/22	major_frequency=6.857e-01	minor_base=G	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.143e-01	polymorphism_score=64.6	prediction=polymorphism	ref_cov=26/22	total_cov=42/28
RA	306	.	NC_000913	1429462	0	C	T	bias_e_value=2128090	bias_p_value=0.458476	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.5	fisher_strand_p_value=0.193031	frequency=3.056e-01	ks_quality_p_value=0.843835	major_base=C	major_cov=27/23	major_frequency=6.944e-01	minor_base=T	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.056e-01	polymorphism_score=59.4	prediction=polymorphism	ref_cov=27/23	total_cov=43/29
RA	307	.	NC_000913	1429463	0	C	G	bias_e_value=1175150	bias_p_value=0.253175	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.3	fisher_strand_p_value=0.193031	frequency=3.056e-01	ks_quality_p_value=0.356863	major_base=C	major_cov=27/23	major_frequency=6.944e-01	minor_base=G	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.056e-01	polymorphism_score=84.0	prediction=polymorphism	ref_cov=27/23	total_cov=43/29
RA	308	.	NC_000913	1429464	0	G	C	bias_e_value=987218	bias_p_value=0.212687	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.8	fisher_strand_p_value=0.193031	frequency=3.056e-01	ks_quality_p_value=0.281655	major_base=G	major_cov=27/23	major_frequency=6.944e-01	minor_base=C	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.056e-01	polymorphism_score=78.5	prediction=polymorphism	ref_cov=27/23	total_cov=43/29
RA	309	.	NC_000913	1429466	0	G	C	bias_e_value=14935.5	bias_p_value=0.00321771	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.1	fisher_strand_p_value=0.191225	frequency=3.099e-01	ks_quality_p_value=0.00188466	major_base=G	major_cov=26/23	major_frequency=6.901e-01	minor_base=C	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.099e-01	polymorphism_score=80.8	prediction=polymorphism	ref_cov=26/23	total_cov=42/29
RA	310	.	NC_000913	1429470	0	C	T	bias_e_value=568877	bias_p_value=0.122559	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.5	fisher_strand_p_value=0.1231	frequency=3.235e-01	ks_quality_p_value=0.214932	major_base=C	major_cov=24/22	major_frequency=6.765e-01	minor_base=T	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.235e-01	polymorphism_score=58.9	prediction=polymorphism	ref_cov=24/22	total_cov=40/28
RA	311	.	NC_000913	1429471	0	G	C	bias_e_value=984975	bias_p_value=0.212204	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.9	fisher_strand_p_value=0.1231	frequency=3.235e-01	ks_quality_p_value=0.440311	major_base=G	major_cov=24/22	major_frequency=6.765e-01	minor_base=C	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.235e-01	polymorphism_score=76.2	prediction=polymorphism	ref_cov=24/22	total_cov=40/28
RA	312	.	NC_000913	1429474	0	A	G	bias_e_value=1722300	bias_p_value=0.371053	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.8	fisher_strand_p_value=0.118415	frequency=3.134e-01	ks_quality_p_value=0.999969	major_base=A	major_cov=23/23	major_frequency=6.866e-01	minor_base=G	minor_cov=15/6	new_cov=15/6	polymorphism_frequency=3.134e-01	polymorphism_score=52.7	prediction=polymorphism	ref_cov=23/23	total_cov=40/29
RA	313	.	NC_000913	1429475	0	A	G	bias_e_value=1500230	bias_p_value=0.323211	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.5	fisher_strand_p_value=0.118727	frequency=3.188e-01	ks_quality_p_value=0.816659	major_base=A	major_cov=24/23	major_frequency=6.812e-01	minor_base=G	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.188e-01	polymorphism_score=58.3	prediction=polymorphism	ref_cov=24/23	total_cov=40/29
RA	314	.	NC_000913	1429479	0	A	T	bias_e_value=140127	bias_p_value=0.030189	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.0	fisher_strand_p_value=0.199519	frequency=3.286e-01	ks_quality_p_value=0.0238339	major_base=A	major_cov=24/23	major_frequency=6.714e-01	minor_base=T	minor_cov=16/7	new_cov=16/7	polymorphism_frequency=3.286e-01	polymorphism_score=73.4	prediction=polymorphism	ref_cov=24/23	total_cov=40/30
RA	315	.	NC_000913	1429482	0	C	T	bias_e_value=1074860	bias_p_value=0.231568	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.9	fisher_strand_p_value=0.11781	frequency=3.143e-01	ks_quality_p_value=0.517657	major_base=C	major_cov=24/24	major_frequency=6.857e-01	minor_base=T	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.143e-01	polymorphism_score=59.3	prediction=polymorphism	ref_cov=24/24	total_cov=40/30
RA	316	.	NC_000913	1429484	0	G	A	bias_e_value=370825	bias_p_value=0.0798907	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.5	fisher_strand_p_value=0.11781	frequency=3.143e-01	ks_quality_p_value=0.131168	major_base=G	major_cov=24/24	major_frequency=6.857e-01	minor_base=A	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.143e-01	polymorphism_score=58.1	prediction=polymorphism	ref_cov=24/24	total_cov=40/30
RA	317	.	NC_000913	1429492	0	T	A	bias_e_value=994337	bias_p_value=0.214221	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.0	fisher_strand_p_value=0.11781	frequency=3.143e-01	ks_quality_p_value=0.465969	major_base=T	major_cov=24/24	major_frequency=6.857e-01	minor_base=A	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.143e-01	polymorphism_score=70.7	prediction=polymorphism	ref_cov=24/24	total_cov=40/30
RA	318	.	NC_000913	1429493	0	G	A	bias_e_value=940600	bias_p_value=0.202643	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.4	fisher_strand_p_value=0.11781	frequency=3.143e-01	ks_quality_p_value=0.432534	major_base=G	major_cov=24/24	major_frequency=6.857e-01	minor_base=A	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.143e-01	polymorphism_score=62.5	prediction=polymorphism	ref_cov=24/24	total_cov=40/30
RA	319	.	NC_000913	1429495	0	G	T	bias_e_value=699021	bias_p_value=0.150597	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.4	fisher_strand_p_value=0.0747032	frequency=3.099e-01	ks_quality_p_value=0.461601	major_base=G	major_cov=24/25	major_frequency=6.901e-01	minor_base=T	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=3.099e-01	polymorphism_score=66.4	prediction=polymorphism	ref_cov=24/25	total_cov=40/31
RA	320	.	NC_000913	1429510	0	A	C	bias_e_value=802759	bias_p_value=0.172947	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.4	fisher_strand_p_value=0.107235	frequency=3.293e-01	ks_quality_p_value=0.385218	major_base=A	major_cov=26/29	major_frequency=6.707e-01	minor_base=C	minor_cov=18/9	new_cov=18/9	polymorphism_frequency=3.293e-01	polymorphism_score=68.8	prediction=polymorphism	ref_cov=26/29	total_cov=44/38
RA	321	.	NC_000913	1429522	0	A	C	bias_e_value=1535970	bias_p_value=0.330911	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.0	fisher_strand_p_value=0.162826	frequency=3.373e-01	ks_quality_p_value=0.615893	major_base=A	major_cov=25/30	major_frequency=6.627e-01	minor_base=C	minor_cov=18/10	new_cov=18/10	polymorphism_frequency=3.373e-01	polymorphism_score=76.1	prediction=polymorphism	ref_cov=25/30	total_cov=43/40
RA	322	.	NC_000913	1429534	0	C	T	bias_e_value=149029	bias_p_value=0.0321068	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.9	fisher_strand_p_value=0.0373769	frequency=3.537e-01	ks_quality_p_value=0.136886	major_base=C	major_cov=23/30	major_frequency=6.463e-01	minor_base=T	minor_cov=20/9	new_cov=20/9	polymorphism_frequency=3.537e-01	polymorphism_score=79.2	prediction=polymorphism	ref_cov=23/30	total_cov=43/39
RA	323	.	NC_000913	1429537	0	G	A	bias_e_value=916728	bias_p_value=0.1975	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.6	fisher_strand_p_value=0.10244	frequency=3.590e-01	ks_quality_p_value=0.480657	major_base=G	major_cov=22/28	major_frequency=6.410e-01	minor_base=A	minor_cov=18/10	new_cov=18/10	polymorphism_frequency=3.590e-01	polymorphism_score=73.2	prediction=polymorphism	ref_cov=22/28	total_cov=40/38
RA	324	.	NC_000913	1429543	0	G	A	bias_e_value=957019	bias_p_value=0.206181	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.6	fisher_strand_p_value=0.10244	frequency=3.590e-01	ks_quality_p_value=0.509073	major_base=G	major_cov=22/28	major_frequency=6.410e-01	minor_base=A	minor_cov=18/10	new_cov=18/10	polymorphism_frequency=3.590e-01	polymorphism_score=75.9	prediction=polymorphism	ref_cov=22/28	total_cov=40/38
RA	325	.	NC_000913	1429550	0	T	G	bias_e_value=1722750	bias_p_value=0.371149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.4	fisher_strand_p_value=0.160605	frequency=3.375e-01	ks_quality_p_value=0.737564	major_base=T	major_cov=24/29	major_frequency=6.625e-01	minor_base=G	minor_cov=17/10	new_cov=17/10	polymorphism_frequency=3.375e-01	polymorphism_score=77.3	prediction=polymorphism	ref_cov=24/29	total_cov=41/39
RA	326	.	NC_000913	1429551	0	C	A	bias_e_value=2093950	bias_p_value=0.451122	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.1	fisher_strand_p_value=0.160605	frequency=3.375e-01	ks_quality_p_value=0.98914	major_base=C	major_cov=24/29	major_frequency=6.625e-01	minor_base=A	minor_cov=17/10	new_cov=17/10	polymorphism_frequency=3.375e-01	polymorphism_score=64.3	prediction=polymorphism	ref_cov=24/29	total_cov=41/39
RA	327	.	NC_000913	1429558	0	T	C	bias_e_value=1576280	bias_p_value=0.339596	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.0	fisher_strand_p_value=0.104549	frequency=3.500e-01	ks_quality_p_value=0.995614	major_base=T	major_cov=23/29	major_frequency=6.500e-01	minor_base=C	minor_cov=18/10	new_cov=18/10	polymorphism_frequency=3.500e-01	polymorphism_score=68.5	prediction=polymorphism	ref_cov=23/29	total_cov=41/39
RA	328	.	NC_000913	1429562	0	A	G	bias_e_value=1786170	bias_p_value=0.384814	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.8	fisher_strand_p_value=0.155407	frequency=3.418e-01	ks_quality_p_value=0.803978	major_base=A	major_cov=23/29	major_frequency=6.582e-01	minor_base=G	minor_cov=17/10	new_cov=17/10	polymorphism_frequency=3.418e-01	polymorphism_score=76.2	prediction=polymorphism	ref_cov=23/29	total_cov=41/39
RA	329	.	NC_000913	1429569	0	G	A	bias_e_value=1209630	bias_p_value=0.260604	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.8	fisher_strand_p_value=0.0761521	frequency=3.855e-01	ks_quality_p_value=0.941315	major_base=G	major_cov=23/28	major_frequency=6.145e-01	minor_base=A	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.855e-01	polymorphism_score=91.7	prediction=polymorphism	ref_cov=23/28	total_cov=44/39
RA	330	.	NC_000913	1429571	0	A	G	bias_e_value=790016	bias_p_value=0.170201	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.6	fisher_strand_p_value=0.0761521	frequency=3.855e-01	ks_quality_p_value=0.531175	major_base=A	major_cov=23/28	major_frequency=6.145e-01	minor_base=G	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.855e-01	polymorphism_score=88.6	prediction=polymorphism	ref_cov=23/28	total_cov=45/39
RA	331	.	NC_000913	1429580	0	A	G	bias_e_value=2158820	bias_p_value=0.465097	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.3	fisher_strand_p_value=0.183306	frequency=3.976e-01	ks_quality_p_value=0.908631	major_base=A	major_cov=24/26	major_frequency=6.024e-01	minor_base=G	minor_cov=21/12	new_cov=21/12	polymorphism_frequency=3.976e-01	polymorphism_score=99.3	prediction=polymorphism	ref_cov=24/26	total_cov=45/38
RA	332	.	NC_000913	1429597	0	A	G	bias_e_value=4028050	bias_p_value=0.867805	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.4	fisher_strand_p_value=0.816784	frequency=3.333e-01	ks_quality_p_value=0.651439	major_base=A	major_cov=29/27	major_frequency=6.667e-01	minor_base=G	minor_cov=16/12	new_cov=16/12	polymorphism_frequency=3.333e-01	polymorphism_score=79.6	prediction=polymorphism	ref_cov=29/27	total_cov=45/39
RA	333	.	NC_000913	1429598	0	T	G	bias_e_value=3476110	bias_p_value=0.748895	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.3	fisher_strand_p_value=0.816784	frequency=3.333e-01	ks_quality_p_value=0.466776	major_base=T	major_cov=29/27	major_frequency=6.667e-01	minor_base=G	minor_cov=16/12	new_cov=16/12	polymorphism_frequency=3.333e-01	polymorphism_score=82.3	prediction=polymorphism	ref_cov=29/27	total_cov=45/39
RA	334	.	NC_000913	1429599	0	C	A	bias_e_value=4152380	bias_p_value=0.894592	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.3	fisher_strand_p_value=0.646655	frequency=3.373e-01	ks_quality_p_value=0.893106	major_base=C	major_cov=28/27	major_frequency=6.627e-01	minor_base=A	minor_cov=16/12	new_cov=16/12	polymorphism_frequency=3.373e-01	polymorphism_score=76.8	prediction=polymorphism	ref_cov=28/27	total_cov=44/39
RA	335	.	NC_000913	1429609	0	T	C	bias_e_value=2393480	bias_p_value=0.515652	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.3	fisher_strand_p_value=0.48671	frequency=3.373e-01	ks_quality_p_value=0.40301	major_base=T	major_cov=28/27	major_frequency=6.627e-01	minor_base=C	minor_cov=17/11	new_cov=17/11	polymorphism_frequency=3.373e-01	polymorphism_score=74.6	prediction=polymorphism	ref_cov=28/27	total_cov=45/38
RA	336	.	NC_000913	1429612	0	C	A	bias_e_value=3567750	bias_p_value=0.768637	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.2	fisher_strand_p_value=0.486739	frequency=3.333e-01	ks_quality_p_value=0.826565	major_base=C	major_cov=28/28	major_frequency=6.667e-01	minor_base=A	minor_cov=17/11	new_cov=17/11	polymorphism_frequency=3.333e-01	polymorphism_score=74.5	prediction=polymorphism	ref_cov=28/28	total_cov=45/39
RA	337	.	NC_000913	1429615	0	T	C	bias_e_value=2509240	bias_p_value=0.540593	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.6	fisher_strand_p_value=0.640936	frequency=3.373e-01	ks_quality_p_value=0.33051	major_base=T	major_cov=29/26	major_frequency=6.627e-01	minor_base=C	minor_cov=17/11	new_cov=17/11	polymorphism_frequency=3.373e-01	polymorphism_score=77.7	prediction=polymorphism	ref_cov=29/26	total_cov=46/37
RA	338	.	NC_000913	1429632	0	G	A	bias_e_value=4641480	bias_p_value=0.999962	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.7	fisher_strand_p_value=1	frequency=3.297e-01	ks_quality_p_value=0.991283	major_base=G	major_cov=34/27	major_frequency=6.703e-01	minor_base=A	minor_cov=17/13	new_cov=17/13	polymorphism_frequency=3.297e-01	polymorphism_score=81.7	prediction=polymorphism	ref_cov=34/27	total_cov=51/40
RA	339	.	NC_000913	1429682	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.9	fisher_strand_p_value=1	frequency=4.400e-01	ks_quality_p_value=1	major_base=T	major_cov=32/24	major_frequency=5.600e-01	minor_base=G	minor_cov=25/19	new_cov=25/19	polymorphism_frequency=4.400e-01	polymorphism_score=129.5	prediction=polymorphism	ref_cov=32/24	total_cov=57/43
RA	340	.	NC_000913	1429692	0	T	A	bias_e_value=4168700	bias_p_value=0.898108	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.6	fisher_strand_p_value=1	frequency=4.356e-01	ks_quality_p_value=0.584002	major_base=T	major_cov=32/25	major_frequency=5.644e-01	minor_base=A	minor_cov=25/19	new_cov=25/19	polymorphism_frequency=4.356e-01	polymorphism_score=150.6	prediction=polymorphism	ref_cov=32/25	total_cov=57/44
RA	341	.	NC_000913	1429702	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.2	fisher_strand_p_value=1	frequency=4.327e-01	ks_quality_p_value=0.999935	major_base=A	major_cov=33/26	major_frequency=5.673e-01	minor_base=C	minor_cov=25/20	new_cov=25/20	polymorphism_frequency=4.327e-01	polymorphism_score=137.0	prediction=polymorphism	ref_cov=33/26	total_cov=59/46
RA	342	.	NC_000913	1429708	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.9	fisher_strand_p_value=1	frequency=4.352e-01	ks_quality_p_value=1	major_base=A	major_cov=35/26	major_frequency=5.648e-01	minor_base=G	minor_cov=27/20	new_cov=27/20	polymorphism_frequency=4.352e-01	polymorphism_score=132.4	prediction=polymorphism	ref_cov=35/26	total_cov=62/46
RA	343	.	NC_000913	1429714	0	A	C	bias_e_value=4496790	bias_p_value=0.968792	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.4	fisher_strand_p_value=0.846228	frequency=4.312e-01	ks_quality_p_value=0.899052	major_base=A	major_cov=37/25	major_frequency=5.688e-01	minor_base=C	minor_cov=27/20	new_cov=27/20	polymorphism_frequency=4.312e-01	polymorphism_score=153.5	prediction=polymorphism	ref_cov=37/25	total_cov=64/46
RA	344	.	NC_000913	1429724	0	A	G	bias_e_value=4603930	bias_p_value=0.991874	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.8	fisher_strand_p_value=1	frequency=4.455e-01	ks_quality_p_value=0.875255	major_base=A	major_cov=36/25	major_frequency=5.545e-01	minor_base=G	minor_cov=29/20	new_cov=29/20	polymorphism_frequency=4.455e-01	polymorphism_score=138.6	prediction=polymorphism	ref_cov=36/25	total_cov=65/45
RA	345	.	NC_000913	1429732	0	G	A	bias_e_value=4631180	bias_p_value=0.997743	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.3	fisher_strand_p_value=1	frequency=4.245e-01	ks_quality_p_value=0.933573	major_base=G	major_cov=36/25	major_frequency=5.755e-01	minor_base=A	minor_cov=27/18	new_cov=27/18	polymorphism_frequency=4.245e-01	polymorphism_score=130.5	prediction=polymorphism	ref_cov=36/25	total_cov=64/44
RA	346	.	NC_000913	1429735	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.8	fisher_strand_p_value=1	frequency=4.352e-01	ks_quality_p_value=1	major_base=A	major_cov=36/25	major_frequency=5.648e-01	minor_base=G	minor_cov=28/19	new_cov=28/19	polymorphism_frequency=4.352e-01	polymorphism_score=135.3	prediction=polymorphism	ref_cov=36/25	total_cov=64/44
RA	347	.	NC_000913	1429741	0	A	G	bias_e_value=3839280	bias_p_value=0.827136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.2	fisher_strand_p_value=0.839088	frequency=4.078e-01	ks_quality_p_value=0.563739	major_base=A	major_cov=36/25	major_frequency=5.922e-01	minor_base=G	minor_cov=26/16	new_cov=26/16	polymorphism_frequency=4.078e-01	polymorphism_score=123.7	prediction=polymorphism	ref_cov=36/25	total_cov=62/41
RA	348	.	NC_000913	1429744	0	T	C	bias_e_value=4293910	bias_p_value=0.925083	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.9	fisher_strand_p_value=1	frequency=4.118e-01	ks_quality_p_value=0.63879	major_base=T	major_cov=36/24	major_frequency=5.882e-01	minor_base=C	minor_cov=26/16	new_cov=26/16	polymorphism_frequency=4.118e-01	polymorphism_score=123.0	prediction=polymorphism	ref_cov=36/24	total_cov=62/40
RA	349	.	NC_000913	1429747	0	G	C	bias_e_value=2730780	bias_p_value=0.588321	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.3	fisher_strand_p_value=0.838645	frequency=4.158e-01	ks_quality_p_value=0.291062	major_base=G	major_cov=35/24	major_frequency=5.842e-01	minor_base=C	minor_cov=26/16	new_cov=26/16	polymorphism_frequency=4.158e-01	polymorphism_score=158.8	prediction=polymorphism	ref_cov=35/24	total_cov=61/40
RA	350	.	NC_000913	1429750	0	C	T	bias_e_value=513147	bias_p_value=0.110553	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.0	fisher_strand_p_value=0.838645	frequency=4.158e-01	ks_quality_p_value=0.0276754	major_base=C	major_cov=35/24	major_frequency=5.842e-01	minor_base=T	minor_cov=26/16	new_cov=26/16	polymorphism_frequency=4.158e-01	polymorphism_score=125.4	prediction=polymorphism	ref_cov=35/24	total_cov=61/40
RA	351	.	NC_000913	1429753	0	G	A	bias_e_value=1253050	bias_p_value=0.269957	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.7	fisher_strand_p_value=1	frequency=4.286e-01	ks_quality_p_value=0.0752654	major_base=G	major_cov=34/22	major_frequency=5.714e-01	minor_base=A	minor_cov=26/16	new_cov=26/16	polymorphism_frequency=4.286e-01	polymorphism_score=127.0	prediction=polymorphism	ref_cov=34/22	total_cov=60/38
RA	352	.	NC_000913	1429756	0	C	A	bias_e_value=1487140	bias_p_value=0.320391	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.4	fisher_strand_p_value=1	frequency=4.433e-01	ks_quality_p_value=0.0957544	major_base=C	major_cov=33/21	major_frequency=5.567e-01	minor_base=A	minor_cov=27/16	new_cov=27/16	polymorphism_frequency=4.433e-01	polymorphism_score=127.9	prediction=polymorphism	ref_cov=33/21	total_cov=60/37
RA	353	.	NC_000913	1429759	0	G	A	bias_e_value=71305.2	bias_p_value=0.015362	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.3	fisher_strand_p_value=1	frequency=4.227e-01	ks_quality_p_value=0.002151	major_base=G	major_cov=34/22	major_frequency=5.773e-01	minor_base=A	minor_cov=25/16	new_cov=25/16	polymorphism_frequency=4.227e-01	polymorphism_score=125.8	prediction=polymorphism	ref_cov=34/22	total_cov=60/38
RA	354	.	NC_000913	1429767	0	C	T	bias_e_value=1290830	bias_p_value=0.278096	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.0	fisher_strand_p_value=1	frequency=4.400e-01	ks_quality_p_value=0.0784374	major_base=C	major_cov=34/22	major_frequency=5.600e-01	minor_base=T	minor_cov=27/17	new_cov=27/17	polymorphism_frequency=4.400e-01	polymorphism_score=124.6	prediction=polymorphism	ref_cov=34/22	total_cov=61/39
RA	355	.	NC_000913	1429780	0	A	G	bias_e_value=1546770	bias_p_value=0.333236	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.7	fisher_strand_p_value=0.834602	frequency=4.021e-01	ks_quality_p_value=0.121372	major_base=A	major_cov=34/24	major_frequency=5.979e-01	minor_base=G	minor_cov=24/15	new_cov=24/15	polymorphism_frequency=4.021e-01	polymorphism_score=114.5	prediction=polymorphism	ref_cov=34/24	total_cov=58/39
RA	356	.	NC_000913	1429783	0	G	A	bias_e_value=176222	bias_p_value=0.0379653	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.9	fisher_strand_p_value=0.835157	frequency=3.939e-01	ks_quality_p_value=0.00748254	major_base=G	major_cov=35/25	major_frequency=6.061e-01	minor_base=A	minor_cov=24/15	new_cov=24/15	polymorphism_frequency=3.939e-01	polymorphism_score=117.4	prediction=polymorphism	ref_cov=35/25	total_cov=59/40
RA	357	.	NC_000913	1429816	0	C	T	bias_e_value=4567600	bias_p_value=0.984047	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.5	fisher_strand_p_value=0.82686	frequency=3.441e-01	ks_quality_p_value=0.999901	major_base=C	major_cov=34/27	major_frequency=6.559e-01	minor_base=T	minor_cov=19/13	new_cov=19/13	polymorphism_frequency=3.441e-01	polymorphism_score=86.1	prediction=polymorphism	ref_cov=34/27	total_cov=53/40
RA	358	.	NC_000913	1429820	0	A	G	bias_e_value=3942350	bias_p_value=0.849341	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.0	fisher_strand_p_value=0.504016	frequency=3.523e-01	ks_quality_p_value=1	major_base=A	major_cov=30/27	major_frequency=6.477e-01	minor_base=G	minor_cov=19/12	new_cov=19/12	polymorphism_frequency=3.523e-01	polymorphism_score=79.4	prediction=polymorphism	ref_cov=30/27	total_cov=51/39
RA	359	.	NC_000913	1429823	0	A	C	bias_e_value=2416520	bias_p_value=0.520617	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.7	fisher_strand_p_value=0.655032	frequency=3.444e-01	ks_quality_p_value=0.304125	major_base=A	major_cov=32/27	major_frequency=6.556e-01	minor_base=C	minor_cov=19/12	new_cov=19/12	polymorphism_frequency=3.444e-01	polymorphism_score=81.0	prediction=polymorphism	ref_cov=32/27	total_cov=51/39
RA	360	.	NC_000913	1429851	0	G	A	bias_e_value=4091400	bias_p_value=0.881454	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.2	fisher_strand_p_value=1	frequency=2.973e-01	ks_quality_p_value=0.554452	major_base=G	major_cov=30/22	major_frequency=7.027e-01	minor_base=A	minor_cov=13/9	new_cov=13/9	polymorphism_frequency=2.973e-01	polymorphism_score=61.7	prediction=polymorphism	ref_cov=30/22	total_cov=43/31
RA	361	.	NC_000913	1429858	0	C	T	bias_e_value=1476020	bias_p_value=0.317994	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.4	fisher_strand_p_value=0.788461	frequency=2.817e-01	ks_quality_p_value=0.120152	major_base=C	major_cov=30/21	major_frequency=7.183e-01	minor_base=T	minor_cov=13/7	new_cov=13/7	polymorphism_frequency=2.817e-01	polymorphism_score=48.3	prediction=polymorphism	ref_cov=30/21	total_cov=43/28
RA	362	.	NC_000913	1429861	0	G	C	bias_e_value=1860300	bias_p_value=0.400783	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.3	fisher_strand_p_value=0.788461	frequency=2.817e-01	ks_quality_p_value=0.168349	major_base=G	major_cov=30/21	major_frequency=7.183e-01	minor_base=C	minor_cov=13/7	new_cov=13/7	polymorphism_frequency=2.817e-01	polymorphism_score=66.6	prediction=polymorphism	ref_cov=30/21	total_cov=43/28
RA	363	.	NC_000913	1429863	0	A	G	bias_e_value=376816	bias_p_value=0.0811815	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.6	fisher_strand_p_value=0.78769	frequency=2.857e-01	ks_quality_p_value=0.0200119	major_base=A	major_cov=29/21	major_frequency=7.143e-01	minor_base=G	minor_cov=13/7	new_cov=13/7	polymorphism_frequency=2.857e-01	polymorphism_score=51.5	prediction=polymorphism	ref_cov=29/21	total_cov=42/28
RA	364	.	NC_000913	1429888	0	C	T	bias_e_value=2061830	bias_p_value=0.444202	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.1	fisher_strand_p_value=0.387033	frequency=2.381e-01	ks_quality_p_value=0.400803	major_base=C	major_cov=22/26	major_frequency=7.619e-01	minor_base=T	minor_cov=9/6	new_cov=9/6	polymorphism_frequency=2.381e-01	polymorphism_score=31.3	prediction=polymorphism	ref_cov=22/26	total_cov=31/32
RA	365	.	NC_000913	1429897	0	T	A	bias_e_value=1523870	bias_p_value=0.328303	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.5	fisher_strand_p_value=0.209236	frequency=2.167e-01	ks_quality_p_value=0.473877	major_base=T	major_cov=21/26	major_frequency=7.833e-01	minor_base=A	minor_cov=9/4	new_cov=9/4	polymorphism_frequency=2.167e-01	polymorphism_score=35.3	prediction=polymorphism	ref_cov=21/26	total_cov=30/30
RA	366	.	NC_000913	1494388	0	C	.	consensus_score=177.5	frequency=1	major_base=.	major_cov=15/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	367	.	NC_000913	1517508	0	G	T	consensus_score=87.6	frequency=1	major_base=T	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	368	.	NC_000913	1634482	0	T	C	bias_e_value=2867960	bias_p_value=0.617874	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.7	fisher_strand_p_value=0.335913	frequency=3.810e-01	ks_quality_p_value=0.79102	major_base=T	major_cov=8/5	major_frequency=6.190e-01	minor_base=C	minor_cov=7/1	new_cov=7/1	polymorphism_frequency=3.810e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=8/5	total_cov=15/6
RA	369	.	NC_000913	1634484	0	G	T	bias_e_value=3260120	bias_p_value=0.702362	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.7	fisher_strand_p_value=0.335913	frequency=3.810e-01	ks_quality_p_value=1	major_base=G	major_cov=8/5	major_frequency=6.190e-01	minor_base=T	minor_cov=7/1	new_cov=7/1	polymorphism_frequency=3.810e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=8/5	total_cov=15/6
RA	370	.	NC_000913	1634569	0	A	T	bias_e_value=4165570	bias_p_value=0.897432	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.1	fisher_strand_p_value=1	frequency=6.000e-01	ks_quality_p_value=0.582748	major_base=T	major_cov=15/15	major_frequency=6.000e-01	minor_base=A	minor_cov=10/10	new_cov=15/15	polymorphism_frequency=6.000e-01	polymorphism_score=65.9	prediction=polymorphism	ref_cov=10/10	total_cov=25/25
RA	371	.	NC_000913	1634571	0	C	T	bias_e_value=4515160	bias_p_value=0.972748	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.8	fisher_strand_p_value=1	frequency=5.769e-01	ks_quality_p_value=0.775811	major_base=T	major_cov=15/15	major_frequency=5.769e-01	minor_base=C	minor_cov=11/11	new_cov=15/15	polymorphism_frequency=5.769e-01	polymorphism_score=63.7	prediction=polymorphism	ref_cov=11/11	total_cov=26/26
RA	372	.	NC_000913	1634578	0	T	C	bias_e_value=1829920	bias_p_value=0.394239	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.1	fisher_strand_p_value=1	frequency=5.962e-01	ks_quality_p_value=0.129515	major_base=C	major_cov=16/15	major_frequency=5.962e-01	minor_base=T	minor_cov=10/11	new_cov=16/15	polymorphism_frequency=5.962e-01	polymorphism_score=60.5	prediction=polymorphism	ref_cov=10/11	total_cov=27/26
RA	373	.	NC_000913	1634597	0	C	A	bias_e_value=4244960	bias_p_value=0.914537	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.8	fisher_strand_p_value=1	frequency=5.818e-01	ks_quality_p_value=0.616166	major_base=A	major_cov=16/16	major_frequency=5.818e-01	minor_base=C	minor_cov=11/12	new_cov=16/16	polymorphism_frequency=5.818e-01	polymorphism_score=80.7	prediction=polymorphism	ref_cov=11/12	total_cov=27/28
RA	374	.	NC_000913	1634658	0	A	G	bias_e_value=4641650	bias_p_value=0.999999	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.7	fisher_strand_p_value=1	frequency=6.364e-01	ks_quality_p_value=0.998702	major_base=G	major_cov=17/18	major_frequency=6.364e-01	minor_base=A	minor_cov=10/10	new_cov=17/18	polymorphism_frequency=6.364e-01	polymorphism_score=53.7	prediction=polymorphism	ref_cov=10/10	total_cov=28/28
RA	375	.	NC_000913	1634661	0	C	G	bias_e_value=4180300	bias_p_value=0.900606	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.8	fisher_strand_p_value=1	frequency=6.182e-01	ks_quality_p_value=0.588681	major_base=G	major_cov=17/17	major_frequency=6.182e-01	minor_base=C	minor_cov=11/10	new_cov=17/17	polymorphism_frequency=6.182e-01	polymorphism_score=75.0	prediction=polymorphism	ref_cov=11/10	total_cov=28/28
RA	376	.	NC_000913	1634676	0	A	G	bias_e_value=4505380	bias_p_value=0.970642	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.7	fisher_strand_p_value=1	frequency=6.226e-01	ks_quality_p_value=0.767682	major_base=G	major_cov=17/16	major_frequency=6.226e-01	minor_base=A	minor_cov=10/10	new_cov=17/16	polymorphism_frequency=6.226e-01	polymorphism_score=52.3	prediction=polymorphism	ref_cov=10/10	total_cov=27/28
RA	377	.	NC_000913	1634699	0	A	C	bias_e_value=3135510	bias_p_value=0.675517	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.7	fisher_strand_p_value=0.767637	frequency=6.250e-01	ks_quality_p_value=0.40657	major_base=C	major_cov=13/17	major_frequency=6.250e-01	minor_base=A	minor_cov=9/9	new_cov=13/17	polymorphism_frequency=6.250e-01	polymorphism_score=53.8	prediction=polymorphism	ref_cov=9/9	total_cov=22/26
RA	378	.	NC_000913	1634724	0	G	A	bias_e_value=4618850	bias_p_value=0.995086	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.9	fisher_strand_p_value=1	frequency=6.667e-01	ks_quality_p_value=0.90252	major_base=A	major_cov=10/16	major_frequency=6.667e-01	minor_base=G	minor_cov=5/8	new_cov=10/16	polymorphism_frequency=6.667e-01	polymorphism_score=33.4	prediction=polymorphism	ref_cov=5/8	total_cov=15/24
RA	379	.	NC_000913	1634769	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.9	fisher_strand_p_value=1	frequency=6.087e-01	ks_quality_p_value=1	major_base=A	major_cov=5/9	major_frequency=6.087e-01	minor_base=T	minor_cov=3/6	new_cov=5/9	polymorphism_frequency=6.087e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=3/6	total_cov=8/16
RA	380	.	NC_000913	1634778	0	T	G	bias_e_value=4066690	bias_p_value=0.87613	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.3	fisher_strand_p_value=0.628483	frequency=5.263e-01	ks_quality_p_value=0.868037	major_base=G	major_cov=4/6	major_frequency=5.263e-01	minor_base=T	minor_cov=2/7	new_cov=4/6	polymorphism_frequency=5.263e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=2/7	total_cov=6/13
RA	381	.	NC_000913	1634799	0	A	G	bias_e_value=3202210	bias_p_value=0.689886	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.2	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.324652	major_base=A	major_cov=3/5	major_frequency=5.000e-01	minor_base=G	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=5.000e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=3/5	total_cov=6/10
RA	382	.	NC_000913	1635974	0	T	G	bias_e_value=4473710	bias_p_value=0.963819	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.9	fisher_strand_p_value=0.790123	frequency=4.138e-01	ks_quality_p_value=0.940804	major_base=T	major_cov=16/18	major_frequency=5.862e-01	minor_base=G	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=4.138e-01	polymorphism_score=65.4	prediction=polymorphism	ref_cov=16/18	total_cov=29/29
RA	383	.	NC_000913	1636068	0	T	C	bias_e_value=4523300	bias_p_value=0.974501	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.5	fisher_strand_p_value=1	frequency=3.582e-01	ks_quality_p_value=0.782844	major_base=T	major_cov=24/19	major_frequency=6.418e-01	minor_base=C	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=3.582e-01	polymorphism_score=68.8	prediction=polymorphism	ref_cov=24/19	total_cov=37/30
RA	384	.	NC_000913	1636074	0	C	T	bias_e_value=4259190	bias_p_value=0.917602	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.6	fisher_strand_p_value=1	frequency=3.582e-01	ks_quality_p_value=0.622564	major_base=C	major_cov=24/19	major_frequency=6.418e-01	minor_base=T	minor_cov=13/11	new_cov=13/11	polymorphism_frequency=3.582e-01	polymorphism_score=67.0	prediction=polymorphism	ref_cov=24/19	total_cov=37/30
RA	385	.	NC_000913	1636128	0	C	T	bias_e_value=4633460	bias_p_value=0.998236	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.9	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.941194	major_base=C	major_cov=23/21	major_frequency=6.667e-01	minor_base=T	minor_cov=12/10	new_cov=12/10	polymorphism_frequency=3.333e-01	polymorphism_score=53.6	prediction=polymorphism	ref_cov=23/21	total_cov=35/31
RA	386	.	NC_000913	1636145	0	T	C	bias_e_value=4632380	bias_p_value=0.998002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.9	fisher_strand_p_value=1	frequency=3.188e-01	ks_quality_p_value=0.937455	major_base=T	major_cov=25/22	major_frequency=6.812e-01	minor_base=C	minor_cov=12/10	new_cov=12/10	polymorphism_frequency=3.188e-01	polymorphism_score=57.8	prediction=polymorphism	ref_cov=25/22	total_cov=37/32
RA	387	.	NC_000913	1636173	0	T	C	bias_e_value=3887850	bias_p_value=0.8376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.1	fisher_strand_p_value=0.530101	frequency=2.105e-01	ks_quality_p_value=0.919238	major_base=T	major_cov=24/21	major_frequency=7.895e-01	minor_base=C	minor_cov=5/7	new_cov=5/7	polymorphism_frequency=2.105e-01	polymorphism_score=25.2	prediction=polymorphism	ref_cov=24/21	total_cov=29/28
RA	388	.	NC_000913	1636413	0	C	A	bias_e_value=3540030	bias_p_value=0.762666	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.0	fisher_strand_p_value=0.421769	frequency=2.222e-01	ks_quality_p_value=0.938482	major_base=C	major_cov=9/19	major_frequency=7.778e-01	minor_base=A	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=2.222e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=9/19	total_cov=13/23
RA	389	.	NC_000913	1636423	0	T	C	bias_e_value=3692010	bias_p_value=0.795408	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.9	fisher_strand_p_value=0.44173	frequency=2.703e-01	ks_quality_p_value=0.980179	major_base=T	major_cov=7/20	major_frequency=7.297e-01	minor_base=C	minor_cov=4/6	new_cov=4/6	polymorphism_frequency=2.703e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=7/20	total_cov=12/26
RA	390	.	NC_000913	1636455	0	G	A	bias_e_value=3797270	bias_p_value=0.818086	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.0	fisher_strand_p_value=1	frequency=3.171e-01	ks_quality_p_value=0.461139	major_base=G	major_cov=9/19	major_frequency=6.829e-01	minor_base=A	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=3.171e-01	polymorphism_score=33.7	prediction=polymorphism	ref_cov=9/19	total_cov=13/28
RA	391	.	NC_000913	1636484	0	C	T	bias_e_value=2155830	bias_p_value=0.464453	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.6	fisher_strand_p_value=0.459744	frequency=4.595e-01	ks_quality_p_value=0.361502	major_base=C	major_cov=4/16	major_frequency=5.405e-01	minor_base=T	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=4.595e-01	polymorphism_score=43.0	prediction=polymorphism	ref_cov=4/16	total_cov=10/27
RA	392	.	NC_000913	1636503	0	T	C	bias_e_value=216356	bias_p_value=0.0466119	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.4	fisher_strand_p_value=0.107509	frequency=5.111e-01	ks_quality_p_value=0.0743846	major_base=C	major_cov=10/13	major_frequency=5.111e-01	minor_base=T	minor_cov=4/18	new_cov=10/13	polymorphism_frequency=5.111e-01	polymorphism_score=63.0	prediction=polymorphism	ref_cov=4/18	total_cov=14/31
RA	393	.	NC_000913	1652331	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=73.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=13/9	major_frequency=9.565e-01	minor_base=T	minor_cov=1/0	new_cov=13/9	polymorphism_frequency=9.565e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=1/0	total_cov=14/9
RA	394	.	NC_000913	1667887	0	C	.	consensus_score=137.0	frequency=1	major_base=.	major_cov=15/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/16
RA	395	.	NC_000913	1672251	0	G	A	consensus_score=111.6	frequency=1	major_base=A	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	396	.	NC_000913	1680659	0	T	C	consensus_score=165.6	frequency=1	major_base=C	major_cov=26/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/22
RA	397	.	NC_000913	1700308	0	C	T	consensus_score=115.4	frequency=1	major_base=T	major_cov=12/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/21
RA	398	.	NC_000913	1700767	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=63.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/11	major_frequency=9.091e-01	minor_base=C	minor_cov=1/1	new_cov=9/11	polymorphism_frequency=9.091e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=1/1	total_cov=10/12
RA	399	.	NC_000913	1701272	0	C	T	consensus_score=74.9	frequency=1	major_base=T	major_cov=15/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/8
RA	400	.	NC_000913	1722089	0	G	A	bias_e_value=3661230	bias_p_value=0.788777	consensus_score=165.4	fisher_strand_p_value=0.425532	frequency=1	ks_quality_p_value=0.999075	major_base=A	major_cov=19/27	major_frequency=9.787e-01	minor_base=C	minor_cov=1/0	new_cov=19/27	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	401	.	NC_000913	1744751	0	C	.	bias_e_value=4632750	bias_p_value=0.998083	consensus_score=85.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.938717	major_base=.	major_cov=12/10	major_frequency=9.565e-01	minor_base=A	minor_cov=1/0	new_cov=12/10	polymorphism_frequency=9.565e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	402	.	NC_000913	1750270	0	G	A	consensus_score=128.4	frequency=1	major_base=A	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	403	.	NC_000913	1766490	0	G	A	bias_e_value=2557860	bias_p_value=0.551067	consensus_score=140.1	fisher_strand_p_value=0.219231	frequency=1	ks_quality_p_value=0.997372	major_base=A	major_cov=17/21	major_frequency=9.500e-01	minor_base=C	minor_cov=2/0	new_cov=17/21	polymorphism_frequency=9.500e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	404	.	NC_000913	1776012	0	G	A	consensus_score=109.0	frequency=1	major_base=A	major_cov=21/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/10
RA	405	.	NC_000913	1858058	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=93.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=13/13	major_frequency=9.630e-01	minor_base=A	minor_cov=1/0	new_cov=13/13	polymorphism_frequency=9.630e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=14/13
RA	406	.	NC_000913	1905327	0	C	T	consensus_score=54.8	frequency=1	major_base=T	major_cov=11/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/5
RA	407	.	NC_000913	1936057	0	C	T	consensus_score=86.9	frequency=1	major_base=T	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	408	.	NC_000913	1961363	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=115.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/21	major_frequency=9.697e-01	minor_base=G	minor_cov=0/1	new_cov=11/21	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/22
RA	409	.	NC_000913	1978243	0	G	T	consensus_score=63.5	frequency=1	major_base=T	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	410	.	NC_000913	2003264	0	C	T	consensus_score=109.7	frequency=1	major_base=T	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	411	.	NC_000913	2007727	0	C	T	consensus_score=88.4	frequency=1	major_base=T	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	412	.	NC_000913	2032423	0	G	A	consensus_score=104.0	frequency=1	major_base=A	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	413	.	NC_000913	2077829	0	G	A	bias_e_value=4641550	bias_p_value=0.999978	consensus_score=122.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9933	major_base=A	major_cov=17/17	major_frequency=9.714e-01	minor_base=C	minor_cov=1/0	new_cov=17/17	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	414	.	NC_000913	2173363	0	C	.	bias_e_value=3586160	bias_p_value=0.772604	consensus_score=117.1	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=0.84246	major_base=.	major_cov=15/13	major_frequency=9.333e-01	minor_base=C	minor_cov=0/2	new_cov=15/13	polymorphism_frequency=9.333e-01	polymorphism_score=3.1	prediction=consensus	ref_cov=0/2	total_cov=15/15
RA	415	.	NC_000913	2173364	0	C	.	bias_e_value=3358800	bias_p_value=0.723621	consensus_score=118.1	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=0.737299	major_base=.	major_cov=15/13	major_frequency=9.333e-01	minor_base=C	minor_cov=0/2	new_cov=15/13	polymorphism_frequency=9.333e-01	polymorphism_score=2.2	prediction=consensus	ref_cov=0/2	total_cov=15/15
RA	416	.	NC_000913	2242121	0	A	G	consensus_score=124.8	frequency=1	major_base=G	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	417	.	NC_000913	2397444	0	G	A	consensus_score=220.3	frequency=1	major_base=A	major_cov=39/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/22
RA	418	.	NC_000913	2441727	0	T	A	bias_e_value=11956.9	bias_p_value=0.002576	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.1	fisher_strand_p_value=0.000280659	frequency=2.444e-01	ks_quality_p_value=1	major_base=T	major_cov=21/13	major_frequency=7.556e-01	minor_base=A	minor_cov=0/11	new_cov=0/11	polymorphism_frequency=2.444e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=21/13	total_cov=21/24
RA	419	.	NC_000913	3268970	0	A	G	consensus_score=46.4	frequency=1	major_base=G	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	420	.	NC_000913	3486205	0	C	A	consensus_score=120.9	frequency=1	major_base=A	major_cov=12/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/23
RA	421	.	NC_000913	3505129	0	G	T	bias_e_value=435.517	bias_p_value=9.3828e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.0	fisher_strand_p_value=7.31575e-06	frequency=4.103e-01	ks_quality_p_value=1	major_base=G	major_cov=7/16	major_frequency=5.897e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=4.103e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=7/16	total_cov=23/16
RA	422	.	NC_000913	3560455	1	.	G	consensus_score=199.8	frequency=1	major_base=G	major_cov=27/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	423	.	NC_000913	4146389	1	.	T	bias_e_value=4641650	bias_p_value=1	consensus_score=150.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/21	major_frequency=9.318e-01	minor_base=.	minor_cov=2/1	new_cov=20/21	polymorphism_frequency=9.318e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=2/1	total_cov=22/22
RA	424	.	NC_000913	4296380	1	.	C	bias_e_value=3319470	bias_p_value=0.715149	consensus_score=72.8	fisher_strand_p_value=0.347826	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=7/15	major_frequency=9.565e-01	minor_base=A	minor_cov=1/0	new_cov=7/15	polymorphism_frequency=9.565e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	425	.	NC_000913	4296380	2	.	G	consensus_score=73.7	frequency=1	major_base=G	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	426	.	NC_000913	4336901	0	T	A	bias_e_value=3249.17	bias_p_value=0.000700003	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.1	fisher_strand_p_value=8.65159e-05	frequency=3.333e-01	ks_quality_p_value=0.7613	major_base=T	major_cov=16/6	major_frequency=6.667e-01	minor_base=A	minor_cov=0/11	new_cov=0/11	polymorphism_frequency=3.333e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=16/6	total_cov=16/17
RA	427	.	NC_000913	4457105	0	A	G	bias_e_value=138.357	bias_p_value=2.98077e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.3	fisher_strand_p_value=2.11937e-06	frequency=3.023e-01	ks_quality_p_value=1	major_base=A	major_cov=7/23	major_frequency=6.977e-01	minor_base=G	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=3.023e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=7/23	total_cov=20/24
RA	428	.	NC_000913	4542683	0	T	.	consensus_score=98.1	frequency=1	major_base=.	major_cov=7/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	429	.	NC_000913	4542725	0	T	.	consensus_score=98.4	frequency=1	major_base=.	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
MC	430	.	NC_000913	257908	258683	0	0	left_inside_cov=0	left_outside_cov=37	right_inside_cov=2	right_outside_cov=39
MC	431	.	NC_000913	1196291	1211480	0	0	left_inside_cov=4	left_outside_cov=6	right_inside_cov=4	right_outside_cov=6
MC	432	.	NC_000913	1294035	1294175	0	0	left_inside_cov=0	left_outside_cov=17	right_inside_cov=1	right_outside_cov=18
MC	433	.	NC_000913	1303073	1303084	0	0	left_inside_cov=0	left_outside_cov=35	right_inside_cov=0	right_outside_cov=35
MC	434	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=24	right_inside_cov=0	right_outside_cov=26
MC	435	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=48	right_inside_cov=2	right_outside_cov=50
MC	436	.	NC_000913	3423854	3424438	379	200	left_inside_cov=5	left_outside_cov=6	right_inside_cov=5	right_outside_cov=6
MC	437	.	NC_000913	3682261	3682294	0	0	left_inside_cov=0	left_outside_cov=29	right_inside_cov=0	right_outside_cov=30
JC	438	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=236	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=241	max_left_minus=225	max_left_plus=241	max_min_left=121	max_min_left_minus=121	max_min_left_plus=113	max_min_right=125	max_min_right_minus=88	max_min_right_plus=125	max_pos_hash_score=474	max_right=248	max_right_minus=248	max_right_plus=238	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.77	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30
JC	439	.	NC_000913	57276	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__57276__1__NC_000913__382590__-1__0____251__251__0__1	max_left=250	max_left_minus=225	max_left_plus=250	max_min_left=119	max_min_left_minus=105	max_min_left_plus=119	max_min_right=112	max_min_right_minus=93	max_min_right_plus=112	max_pos_hash_score=474	max_right=246	max_right_minus=212	max_right_plus=246	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.65	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=231	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	440	.	NC_000913	57280	-1	NC_000913	381260	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__57280__-1__NC_000913__381260__1__0____251__251__0__1	max_left=242	max_left_minus=224	max_left_plus=242	max_min_left=115	max_min_left_minus=115	max_min_left_plus=113	max_min_right=116	max_min_right_minus=116	max_min_right_plus=107	max_pos_hash_score=474	max_right=250	max_right_minus=248	max_right_plus=250	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=231	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=40
JC	441	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=20	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=228	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=237	max_min_left=114	max_min_left_minus=104	max_min_left_plus=114	max_min_right=118	max_min_right_minus=118	max_min_right_plus=117	max_pos_hash_score=458	max_right=240	max_right_minus=225	max_right_plus=240	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=228	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	442	.	NC_000913	279163	1	NC_000913	2666074	1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__279163__1__NC_000913__2666074__1__0____251__251__1__0	max_left=242	max_left_minus=233	max_left_plus=242	max_min_left=123	max_min_left_minus=81	max_min_left_plus=123	max_min_right=120	max_min_right_minus=120	max_min_right_plus=118	max_pos_hash_score=474	max_right=243	max_right_minus=243	max_right_plus=237	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.47	new_junction_read_count=57	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=227	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=57
JC	443	.	NC_000913	291401	-1	NC_000913	2666082	-1	0	alignment_overlap=1	coverage_minus=21	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__291402__-1__NC_000913__2666082__-1__1____251__251__1__0	max_left=239	max_left_minus=233	max_left_plus=239	max_min_left=124	max_min_left_minus=103	max_min_left_plus=124	max_min_right=123	max_min_right_minus=123	max_min_right_plus=111	max_pos_hash_score=472	max_right=246	max_right_minus=217	max_right_plus=246	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=227	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42
JC	444	.	NC_000913	381260	1	NC_000913	382183	-1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=236	key=NC_000913__381260__1__NC_000913__382183__-1__0____251__251__1__1	max_left=215	max_left_minus=215	max_left_plus=189	max_min_left=124	max_min_left_minus=124	max_min_left_plus=105	max_min_right=114	max_min_right_minus=112	max_min_right_plus=114	max_pos_hash_score=474	max_right=244	max_right_minus=244	max_right_plus=239	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.85	new_junction_read_count=33	polymorphism_frequency=NA	pos_hash_score=32	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=33
JC	445	.	NC_000913	381260	1	NC_000913	1105376	1	0	alignment_overlap=1	coverage_minus=13	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__381260__1__NC_000913__1105375__1__1____251__251__1__0	max_left=236	max_left_minus=236	max_left_plus=223	max_min_left=117	max_min_left_minus=117	max_min_left_plus=112	max_min_right=123	max_min_right_minus=107	max_min_right_plus=123	max_pos_hash_score=472	max_right=237	max_right_minus=237	max_right_plus=223	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.75	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=230	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28
JC	446	.	NC_000913	382179	1	NC_000913	382590	-1	0	alignment_overlap=2	coverage_minus=19	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=234	key=NC_000913__382177__1__NC_000913__382590__-1__2____251__251__1__1	max_left=247	max_left_minus=247	max_left_plus=235	max_min_left=106	max_min_left_minus=106	max_min_left_plus=99	max_min_right=100	max_min_right_minus=94	max_min_right_plus=100	max_pos_hash_score=470	max_right=246	max_right_minus=246	max_right_plus=204	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.75	new_junction_read_count=29	polymorphism_frequency=NA	pos_hash_score=29	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=29
JC	447	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=2.690e-01	junction_possible_overlap_registers=234	key=NC_000913__566774__-1__NC_000913__568034__1__2____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=219	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=115	max_min_right_minus=113	max_min_right_plus=115	max_pos_hash_score=470	max_right=115	max_right_minus=113	max_right_plus=115	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.34	new_junction_read_count=13	polymorphism_frequency=2.690e-01	pos_hash_score=9	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=2	side_1_possible_overlap_registers=236	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=9
JC	448	.	NC_000913	568449	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__568449__1__NC_000913__1469240__-1__0____251__251__0__1	max_left=239	max_left_minus=239	max_left_plus=173	max_min_left=113	max_min_left_minus=96	max_min_left_plus=113	max_min_right=110	max_min_right_minus=110	max_min_right_plus=93	max_pos_hash_score=474	max_right=248	max_right_minus=248	max_right_plus=245	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.67	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=231	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=26
JC	449	.	NC_000913	568453	-1	NC_000913	1467910	1	0	alignment_overlap=1	coverage_minus=17	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__568454__-1__NC_000913__1467910__1__1____251__251__0__1	max_left=244	max_left_minus=237	max_left_plus=244	max_min_left=121	max_min_left_minus=121	max_min_left_plus=54	max_min_right=125	max_min_right_minus=125	max_min_right_plus=84	max_pos_hash_score=472	max_right=243	max_right_minus=229	max_right_plus=243	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.73	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=230	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	450	.	NC_000913	1105380	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__1105380__-1__NC_000913__1467910__1__0____251__251__0__1	max_left=225	max_left_minus=225	max_left_plus=225	max_min_left=121	max_min_left_minus=121	max_min_left_plus=110	max_min_right=79	max_min_right_minus=79	max_min_right_plus=68	max_pos_hash_score=474	max_right=244	max_right_minus=244	max_right_plus=222	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=231	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=30
JC	451	.	NC_000913	1294034	-1	NC_000913	1294176	1	0	alignment_overlap=10	coverage_minus=5	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=226	key=NC_000913__1294034__-1__NC_000913__1294166__1__10____251__251__0__0	max_left=223	max_left_minus=150	max_left_plus=223	max_min_left=119	max_min_left_minus=78	max_min_left_plus=119	max_min_right=117	max_min_right_minus=117	max_min_right_plus=99	max_pos_hash_score=454	max_right=229	max_right_minus=229	max_right_plus=214	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.46	new_junction_read_count=17	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=226	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=16
JC	452	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=10	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=232	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=242	max_left_minus=148	max_left_plus=242	max_min_left=117	max_min_left_minus=117	max_min_left_plus=110	max_min_right=109	max_min_right_minus=109	max_min_right_plus=83	max_pos_hash_score=466	max_right=244	max_right_minus=194	max_right_plus=244	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.50	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=232	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	453	.	NC_000913	1303072	-1	NC_000913	1303085	1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__1303072__-1__NC_000913__1303084__1__1____251__251__0__0	max_left=249	max_left_minus=195	max_left_plus=249	max_min_left=118	max_min_left_minus=118	max_min_left_plus=98	max_min_right=109	max_min_right_minus=109	max_min_right_plus=91	max_pos_hash_score=472	max_right=248	max_right_minus=247	max_right_plus=248	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.91	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35
JC	454	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____251__251__1__0	max_left=241	max_left_minus=232	max_left_plus=241	max_min_left=123	max_min_left_minus=100	max_min_left_plus=123	max_min_right=123	max_min_right_minus=104	max_min_right_plus=123	max_pos_hash_score=474	max_right=245	max_right_minus=220	max_right_plus=245	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.62	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	455	.	NC_000913	1469240	-1	NC_000913	1792772	1	0	alignment_overlap=2	coverage_minus=24	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__1469240__-1__NC_000913__1792770__1__2____251__251__1__0	max_left=240	max_left_minus=231	max_left_plus=240	max_min_left=119	max_min_left_minus=103	max_min_left_plus=119	max_min_right=118	max_min_right_minus=118	max_min_right_plus=110	max_pos_hash_score=470	max_right=236	max_right_minus=236	max_right_plus=217	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.33	new_junction_read_count=51	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=229	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51
JC	456	.	NC_000913	1651548	-1	NC_000913	1792776	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__1651548__-1__NC_000913__1792776__-1__0____251__251__1__0	max_left=230	max_left_minus=230	max_left_plus=198	max_min_left=123	max_min_left_minus=123	max_min_left_plus=119	max_min_right=122	max_min_right_minus=122	max_min_right_plus=62	max_pos_hash_score=474	max_right=239	max_right_minus=198	max_right_plus=239	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.57	new_junction_read_count=22	polymorphism_frequency=9.556e-01	pos_hash_score=20	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=231	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=20
JC	457	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=17	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____251__251__1__0	max_left=240	max_left_minus=234	max_left_plus=240	max_min_left=121	max_min_left_minus=116	max_min_left_plus=121	max_min_right=123	max_min_right_minus=123	max_min_right_plus=105	max_pos_hash_score=472	max_right=245	max_right_minus=245	max_right_plus=231	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=227	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42
JC	458	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____251__251__1__0	max_left=248	max_left_minus=230	max_left_plus=248	max_min_left=125	max_min_left_minus=125	max_min_left_plus=111	max_min_right=120	max_min_right_minus=120	max_min_right_plus=110	max_pos_hash_score=474	max_right=244	max_right_minus=244	max_right_plus=244	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=228	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40
JC	459	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____251__251__0__1	max_left=245	max_left_minus=199	max_left_plus=245	max_min_left=119	max_min_left_minus=119	max_min_left_plus=61	max_min_right=118	max_min_right_minus=114	max_min_right_plus=118	max_pos_hash_score=474	max_right=247	max_right_minus=241	max_right_plus=247	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.67	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=25
JC	460	.	NC_000913	2068941	1	NC_000913	2319850	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__2068941__1__NC_000913__2319850__1__0____251__251__1__0	max_left=249	max_left_minus=149	max_left_plus=249	max_min_left=97	max_min_left_minus=94	max_min_left_plus=97	max_min_right=103	max_min_right_minus=102	max_min_right_plus=103	max_pos_hash_score=474	max_right=228	max_right_minus=222	max_right_plus=228	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.70	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=231	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	461	.	NC_000913	2269876	1	NC_000913	2288919	1	0	alignment_overlap=1	coverage_minus=13	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__2269875__1__NC_000913__2288919__1__1____251__251__0__1	max_left=248	max_left_minus=204	max_left_plus=248	max_min_left=110	max_min_left_minus=110	max_min_left_plus=33	max_min_right=119	max_min_right_minus=118	max_min_right_plus=119	max_pos_hash_score=472	max_right=239	max_right_minus=239	max_right_plus=215	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.57	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=231	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=22
JC	462	.	NC_000913	2269879	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__2269879__-1__NC_000913__2290113__-1__0____251__251__0__1	max_left=245	max_left_minus=245	max_left_plus=244	max_min_left=118	max_min_left_minus=118	max_min_left_plus=104	max_min_right=125	max_min_right_minus=125	max_min_right_plus=120	max_pos_hash_score=474	max_right=247	max_right_minus=247	max_right_plus=235	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.80	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=232	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=31
JC	463	.	NC_000913	2288919	1	NC_000913	4536236	1	0	alignment_overlap=1	coverage_minus=20	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__2288919__1__NC_000913__4536235__1__1____251__251__1__0	max_left=236	max_left_minus=234	max_left_plus=236	max_min_left=106	max_min_left_minus=106	max_min_left_plus=56	max_min_right=108	max_min_right_minus=105	max_min_right_plus=108	max_pos_hash_score=472	max_right=243	max_right_minus=243	max_right_plus=240	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.96	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=231	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	464	.	NC_000913	2290113	-1	NC_000913	4536239	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__2290113__-1__NC_000913__4536239__-1__0____251__251__1__0	max_left=240	max_left_minus=220	max_left_plus=240	max_min_left=114	max_min_left_minus=114	max_min_left_plus=0	max_min_right=119	max_min_right_minus=119	max_min_right_plus=53	max_pos_hash_score=474	max_right=203	max_right_minus=203	max_right_plus=53	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.49	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=232	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	465	.	NC_000913	2319854	-1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__2319854__-1__NC_000913__2997691__-1__0____251__251__0__1	max_left=247	max_left_minus=247	max_left_plus=224	max_min_left=101	max_min_left_minus=101	max_min_left_plus=97	max_min_right=121	max_min_right_minus=121	max_min_right_plus=117	max_pos_hash_score=474	max_right=234	max_right_minus=233	max_right_plus=234	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.70	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=231	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	466	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=26	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=228	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=240	max_left_minus=224	max_left_plus=240	max_min_left=119	max_min_left_minus=119	max_min_left_plus=112	max_min_right=112	max_min_right_minus=98	max_min_right_plus=112	max_pos_hash_score=458	max_right=240	max_right_minus=237	max_right_plus=240	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.28	new_junction_read_count=48	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=228	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=45
JC	467	.	NC_000913	2747600	-1	NC_000913	3365348	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=6.593e-02	junction_possible_overlap_registers=236	key=NC_000913__2747600__-1__NC_000913__3365348__1__0____251__251__0__0	max_left=250	max_left_minus=250	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=104	max_min_right_minus=104	max_min_right_plus=104	max_pos_hash_score=474	max_right=104	max_right_minus=104	max_right_plus=104	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.593e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=0	side_1_possible_overlap_registers=236	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=3
JC	468	.	NC_000913	3187426	-1	NC_000913	3737137	1	0	alignment_overlap=1	coverage_minus=21	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__3187426__-1__NC_000913__3737136__1__1____251__251__1__0	max_left=237	max_left_minus=237	max_left_plus=226	max_min_left=123	max_min_left_minus=100	max_min_left_plus=123	max_min_right=119	max_min_right_minus=119	max_min_right_plus=117	max_pos_hash_score=472	max_right=232	max_right_minus=232	max_right_plus=232	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=230	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=45
JC	469	.	NC_000913	3682260	-1	NC_000913	3682295	1	0	alignment_overlap=2	coverage_minus=13	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__3682260__-1__NC_000913__3682293__1__2____251__251__0__0	max_left=235	max_left_minus=223	max_left_plus=235	max_min_left=120	max_min_left_minus=107	max_min_left_plus=120	max_min_right=123	max_min_right_minus=123	max_min_right_plus=121	max_pos_hash_score=470	max_right=227	max_right_minus=205	max_right_plus=227	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.75	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28
JC	470	.	NC_000913	3737141	-1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__3737141__-1__NC_000913__4498181__1__0____251__251__0__1	max_left=245	max_left_minus=245	max_left_plus=243	max_min_left=92	max_min_left_minus=79	max_min_left_plus=92	max_min_right=119	max_min_right_minus=119	max_min_right_plus=93	max_pos_hash_score=474	max_right=241	max_right_minus=241	max_right_plus=160	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.80	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=231	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=31
JC	471	.	NC_000913	4123923	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=20	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__4123922__1__NC_000913__4498181__1__1____251__251__0__1	max_left=233	max_left_minus=233	max_left_plus=221	max_min_left=110	max_min_left_minus=110	max_min_left_plus=108	max_min_right=101	max_min_right_minus=80	max_min_right_plus=101	max_pos_hash_score=472	max_right=243	max_right_minus=239	max_right_plus=243	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.11	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=230	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=42
JC	472	.	NC_000913	4123927	-1	NC_000913	4499511	-1	0	alignment_overlap=1	coverage_minus=18	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____251__251__0__1	max_left=236	max_left_minus=222	max_left_plus=236	max_min_left=116	max_min_left_minus=102	max_min_left_plus=116	max_min_right=115	max_min_right_minus=114	max_min_right_plus=115	max_pos_hash_score=472	max_right=243	max_right_minus=243	max_right_plus=231	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.98	new_junction_read_count=38	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=230	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=37
JC	473	.	NC_000913	4135180	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=27	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__4135180__1__NC_000913__4498181__1__0____251__251__0__1	max_left=249	max_left_minus=244	max_left_plus=249	max_min_left=109	max_min_left_minus=99	max_min_left_plus=109	max_min_right=113	max_min_right_minus=113	max_min_right_plus=99	max_pos_hash_score=474	max_right=248	max_right_minus=248	max_right_plus=236	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.52	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=231	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=58
JC	474	.	NC_000913	4135184	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__4135184__-1__NC_000913__4499511__-1__0____251__251__0__1	max_left=243	max_left_minus=242	max_left_plus=243	max_min_left=124	max_min_left_minus=119	max_min_left_plus=124	max_min_right=71	max_min_right_minus=71	max_min_right_plus=55	max_pos_hash_score=474	max_right=219	max_right_minus=218	max_right_plus=219	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.01	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=231	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=39
JC	475	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=1.272e-01	junction_possible_overlap_registers=227	key=NC_000913__4542682__1__NC_000913__4542987__1__9____251__251__0__0	max_left=175	max_left_minus=0	max_left_plus=175	max_min_left=73	max_min_left_minus=0	max_min_left_plus=73	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=456	max_right=184	max_right_minus=0	max_right_plus=184	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.272e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=9	side_1_possible_overlap_registers=236	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=227	side_2_read_count=20	side_2_redundant=0	total_non_overlap_reads=3
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UN	747	.	NC_000913	3619418	3619418
UN	748	.	NC_000913	3619423	3619423
UN	749	.	NC_000913	3619426	3619426
UN	750	.	NC_000913	3619438	3619438
UN	751	.	NC_000913	3619442	3619442
UN	752	.	NC_000913	3619445	3619445
UN	753	.	NC_000913	3619450	3619450
UN	754	.	NC_000913	3619452	3619452
UN	755	.	NC_000913	3619455	3619457
UN	756	.	NC_000913	3619459	3619466
UN	757	.	NC_000913	3619468	3619469
UN	758	.	NC_000913	3619474	3619474
UN	759	.	NC_000913	3619476	3619477
UN	760	.	NC_000913	3619480	3619483
UN	761	.	NC_000913	3619485	3620857
UN	762	.	NC_000913	3621308	3621308
UN	763	.	NC_000913	3621319	3622091
UN	764	.	NC_000913	3652234	3652234
UN	765	.	NC_000913	3652253	3653037
UN	766	.	NC_000913	3653046	3653048
UN	767	.	NC_000913	3666578	3666578
UN	768	.	NC_000913	3666584	3666584
UN	769	.	NC_000913	3666588	3666588
UN	770	.	NC_000913	3666591	3666591
UN	771	.	NC_000913	3666595	3666595
UN	772	.	NC_000913	3666597	3666597
UN	773	.	NC_000913	3666599	3666677
UN	774	.	NC_000913	3666679	3666679
UN	775	.	NC_000913	3682261	3682294
UN	776	.	NC_000913	3762469	3762469
UN	777	.	NC_000913	3762476	3762476
UN	778	.	NC_000913	3762479	3762479
UN	779	.	NC_000913	3762481	3763848
UN	780	.	NC_000913	3764294	3764294
UN	781	.	NC_000913	3764296	3765099
UN	782	.	NC_000913	3765101	3765101
UN	783	.	NC_000913	3798797	3798797
UN	784	.	NC_000913	3798993	3798995
UN	785	.	NC_000913	3798997	3799008
UN	786	.	NC_000913	3799010	3799020
UN	787	.	NC_000913	3802278	3802278
UN	788	.	NC_000913	3802285	3802286
UN	789	.	NC_000913	3802289	3802289
UN	790	.	NC_000913	3802292	3802294
UN	791	.	NC_000913	3804748	3804750
UN	792	.	NC_000913	3805334	3805334
UN	793	.	NC_000913	3862661	3862661
UN	794	.	NC_000913	3942258	3943166
UN	795	.	NC_000913	3943810	3943813
UN	796	.	NC_000913	3943815	3943818
UN	797	.	NC_000913	3943821	3943821
UN	798	.	NC_000913	3943823	3943831
UN	799	.	NC_000913	3943835	3943840
UN	800	.	NC_000913	3944290	3945375
UN	801	.	NC_000913	3945381	3945381
UN	802	.	NC_000913	4035373	4035373
UN	803	.	NC_000913	4035375	4035377
UN	804	.	NC_000913	4035379	4035380
UN	805	.	NC_000913	4035382	4035382
UN	806	.	NC_000913	4035384	4035574
UN	807	.	NC_000913	4035576	4035579
UN	808	.	NC_000913	4035583	4035583
UN	809	.	NC_000913	4035940	4036872
UN	810	.	NC_000913	4037594	4037594
UN	811	.	NC_000913	4037599	4037629
UN	812	.	NC_000913	4037643	4037645
UN	813	.	NC_000913	4037647	4037648
UN	814	.	NC_000913	4038001	4038519
UN	815	.	NC_000913	4038523	4038524
UN	816	.	NC_000913	4038886	4038887
UN	817	.	NC_000913	4038889	4038890
UN	818	.	NC_000913	4038894	4039158
UN	819	.	NC_000913	4039622	4040404
UN	820	.	NC_000913	4166501	4166502
UN	821	.	NC_000913	4166504	4166504
UN	822	.	NC_000913	4166506	4166638
UN	823	.	NC_000913	4166642	4166643
UN	824	.	NC_000913	4166869	4168036
UN	825	.	NC_000913	4168041	4168041
UN	826	.	NC_000913	4168758	4171459
UN	827	.	NC_000913	4171896	4171896
UN	828	.	NC_000913	4171900	4171901
UN	829	.	NC_000913	4171903	4171904
UN	830	.	NC_000913	4171907	4171907
UN	831	.	NC_000913	4176750	4176882
UN	832	.	NC_000913	4208299	4208299
UN	833	.	NC_000913	4208313	4208313
UN	834	.	NC_000913	4208323	4208323
UN	835	.	NC_000913	4208326	4209514
UN	836	.	NC_000913	4210244	4212915
UN	837	.	NC_000913	4498383	4499298
UN	838	.	NC_000913	4507675	4507675
UN	839	.	NC_000913	4507677	4508495