#=GENOME_DIFF 1.0 #=CREATED 21:26:27 03 Jun 2025 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20250516nextseq_run_rmdup/IH169_rmdup_R1R2_ -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH169_rmdup_R1.fastq.gz /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH169_rmdup_R2.fastq.gz #=REFSEQ /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff #=READSEQ /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH169_rmdup_R1.fastq.gz #=READSEQ /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH169_rmdup_R2.fastq.gz #=CONVERTED-BASES 493443300 #=CONVERTED-READS 1644811 #=INPUT-BASES 493530900 #=INPUT-READS 1645103 #=MAPPED-BASES 468082691 #=MAPPED-READS 1562949 SNP 1 260 NC_000913 860 T SNP 2 261 NC_000913 10564 T SNP 3 262 NC_000913 23291 T SNP 4 263 NC_000913 25114 T SNP 5 264 NC_000913 47652 A MOB 6 742,743 NC_000913 57276 IS2 1 5 SNP 7 266 NC_000913 69531 A SNP 8 267 NC_000913 71134 A SNP 9 268 NC_000913 81556 A SNP 10 270 NC_000913 148424 T DEL 11 734,744 NC_000913 257908 776 SNP 12 272 NC_000913 311511 A SNP 13 274 NC_000913 378391 T SNP 14 275 NC_000913 390948 T SNP 15 276 NC_000913 418613 T SNP 16 277 NC_000913 432880 T SNP 17 278 NC_000913 438623 T SNP 18 279 NC_000913 441293 T SNP 19 280 NC_000913 557635 T MOB 20 751,752 NC_000913 568449 IS2 -1 5 SNP 21 348 NC_000913 631633 A SNP 22 349 NC_000913 722194 A SNP 23 350 NC_000913 736420 T SNP 24 351 NC_000913 781595 A SNP 25 355 NC_000913 987152 T MOB 26 748,758 NC_000913 1105376 IS2 -1 5 SNP 27 357 NC_000913 1196220 T SNP 28 358 NC_000913 1196232 T SNP 29 359 NC_000913 1196245 C SNP 30 360 NC_000913 1196247 G SNP 31 361 NC_000913 1196277 T SNP 32 362 NC_000913 1196280 C SNP 33 363 NC_000913 1196283 G SNP 34 364 NC_000913 1196292 T SNP 35 369 NC_000913 1290881 T DEL 36 736,761 NC_000913 1294035 141 DEL 37 763 NC_000913 1303073 12 SNP 38 370 NC_000913 1312633 T SNP 39 372 NC_000913 1337394 G SNP 40 373 NC_000913 1353758 A DEL 41 473 NC_000913 1494388 1 SNP 42 474 NC_000913 1517508 T SNP 43 475 NC_000913 1531250 T SNP 44 476 NC_000913 1556938 T SNP 45 503 NC_000913 1652331 C DEL 46 504 NC_000913 1667887 1 DEL 47 505 NC_000913 1744751 1 MOB 48 765,766 NC_000913 1792772 IS2 -1 5 SNP 49 509 NC_000913 1978243 T SNP 50 510 NC_000913 2003264 T SNP 51 511 NC_000913 2032423 A DEL 52 512,513 NC_000913 2173363 2 SNP 53 514 NC_000913 2179326 A SNP 54 516 NC_000913 2242121 G MOB 55 771,772 NC_000913 2269876 IS5 1 4 SNP 56 518 NC_000913 2278650 A SNP 57 520 NC_000913 2313736 T SNP 58 521 NC_000913 2316221 T SNP 59 522 NC_000913 2316753 T SNP 60 523 NC_000913 2317233 T SNP 61 524 NC_000913 2317463 T MOB 62 770,775 NC_000913 2319850 IS2 1 5 SNP 63 525 NC_000913 2320552 T SNP 64 526 NC_000913 2321526 T SNP 65 527 NC_000913 2324745 T SNP 66 528 NC_000913 2327447 T SNP 67 529 NC_000913 2397444 A MOB 68 767,768 NC_000913 2406780 IS1 -1 8 SNP 69 534 NC_000913 2480474 A DEL 70 738,777 NC_000913 2558699 6790 MOB 71 745,746 NC_000913 2666074 IS1 1 9 SNP 72 540 NC_000913 2784599 A SNP 73 541 NC_000913 2789285 A SNP 74 542 NC_000913 2794383 A SNP 75 543 NC_000913 2799156 A SNP 76 544 NC_000913 2799342 A SNP 77 545 NC_000913 2803246 A SNP 78 546 NC_000913 2815005 A SNP 79 547 NC_000913 2816433 A SNP 80 548 NC_000913 2827260 C SNP 81 549 NC_000913 2845115 A SNP 82 550 NC_000913 2856061 A SNP 83 551 NC_000913 2858682 A SNP 84 552 NC_000913 2862253 T SNP 85 553 NC_000913 2864013 T SNP 86 554 NC_000913 2871025 A SNP 87 555 NC_000913 2878239 A SNP 88 556 NC_000913 2885029 A SNP 89 557 NC_000913 2889826 C SNP 90 558 NC_000913 2894133 A SNP 91 559 NC_000913 2899661 A SNP 92 560 NC_000913 2926071 T SNP 93 561 NC_000913 2930384 T SNP 94 562 NC_000913 2935697 T SNP 95 563 NC_000913 2945513 T SNP 96 564 NC_000913 2947323 T SNP 97 565 NC_000913 2949648 T SNP 98 566 NC_000913 2949800 T SNP 99 567 NC_000913 2953166 T SNP 100 568 NC_000913 2958080 T SNP 101 569 NC_000913 2966838 T SNP 102 570 NC_000913 2967877 T SNP 103 571 NC_000913 2983800 T SNP 104 572 NC_000913 2984177 T SNP 105 573 NC_000913 2985807 T SNP 106 574 NC_000913 2986436 T SNP 107 575 NC_000913 2987975 T SNP 108 576 NC_000913 2990087 T SNP 109 578 NC_000913 2994899 T SNP 110 579 NC_000913 3008693 T SNP 111 580 NC_000913 3009580 A SNP 112 581 NC_000913 3010747 A SNP 113 582 NC_000913 3012153 A SNP 114 583 NC_000913 3022051 A SNP 115 584 NC_000913 3042914 T SNP 116 585 NC_000913 3049690 T SNP 117 588 NC_000913 3056165 T SNP 118 589 NC_000913 3057590 T SNP 119 590 NC_000913 3061808 T SNP 120 591 NC_000913 3062319 T SNP 121 592 NC_000913 3062736 T SNP 122 593 NC_000913 3071691 T SNP 123 594 NC_000913 3073577 T SNP 124 595 NC_000913 3076412 T SNP 125 596 NC_000913 3082464 T SNP 126 597 NC_000913 3087433 T SNP 127 598 NC_000913 3093260 T SNP 128 599 NC_000913 3099265 T SNP 129 600 NC_000913 3099484 T SNP 130 601 NC_000913 3100557 T SNP 131 602 NC_000913 3112243 T SNP 132 603 NC_000913 3114520 T SNP 133 604 NC_000913 3160906 T SNP 134 605 NC_000913 3164048 T SNP 135 606 NC_000913 3167365 T SNP 136 607 NC_000913 3173521 T SNP 137 608 NC_000913 3175472 T SNP 138 609 NC_000913 3175628 T SNP 139 610 NC_000913 3190892 A SNP 140 611 NC_000913 3193282 T SNP 141 612 NC_000913 3215106 T SNP 142 613 NC_000913 3218479 T SNP 143 614 NC_000913 3220489 T SNP 144 615 NC_000913 3232319 T SNP 145 616 NC_000913 3240171 A SNP 146 617 NC_000913 3243005 T SNP 147 618 NC_000913 3248308 T SNP 148 619 NC_000913 3248681 T SNP 149 620 NC_000913 3251737 T SNP 150 621 NC_000913 3254120 T SNP 151 622 NC_000913 3254853 T SNP 152 623 NC_000913 3255992 A SNP 153 624 NC_000913 3261943 A SNP 154 625 NC_000913 3268852 A SNP 155 626 NC_000913 3268970 G SNP 156 627 NC_000913 3273052 T SNP 157 628 NC_000913 3276711 T SNP 158 629 NC_000913 3478611 T SNP 159 630 NC_000913 3481609 A SNP 160 631 NC_000913 3486205 A SNP 161 632 NC_000913 3486450 T SNP 162 633 NC_000913 3486873 T SNP 163 634 NC_000913 3488712 T SNP 164 635 NC_000913 3493759 T SNP 165 636 NC_000913 3518251 A SNP 166 637 NC_000913 3519801 A SNP 167 638 NC_000913 3538195 A SNP 168 639 NC_000913 3538357 A SNP 169 640 NC_000913 3539759 A SNP 170 641 NC_000913 3548459 T SNP 171 642 NC_000913 3550402 T INS 172 643 NC_000913 3560455 G SNP 173 644 NC_000913 3563694 T DEL 174 740,781 NC_000913 3682261 34 MOB 175 778,782 NC_000913 3737137 IS2 1 5 SNP 176 646 NC_000913 3796966 T SNP 177 647 NC_000913 3814113 T SNP 178 649 NC_000913 3933450 T SNP 179 650 NC_000913 3934173 T SNP 180 651 NC_000913 3941568 A SNP 181 652 NC_000913 3942034 A SNP 182 653 NC_000913 4061400 T MOB 183 783,784 NC_000913 4123923 IS2 -1 5 MOB 184 785,786 NC_000913 4135180 IS2 -1 5 INS 185 654 NC_000913 4146389 T repeat_length=1 repeat_new_copies=7 repeat_ref_copies=6 repeat_seq=T SNP 186 656 NC_000913 4214131 T SNP 187 657 NC_000913 4218867 T SNP 188 658 NC_000913 4226385 T SNP 189 659 NC_000913 4250729 T SNP 190 660 NC_000913 4253539 T SNP 191 661 NC_000913 4259194 A SNP 192 662 NC_000913 4270229 A SNP 193 663 NC_000913 4277732 A SNP 194 664 NC_000913 4286371 A SNP 195 665 NC_000913 4286403 A SNP 196 666 NC_000913 4290944 A INS 197 670,671 NC_000913 4296381 GC SNP 198 672 NC_000913 4298639 A SNP 199 673 NC_000913 4302032 A SNP 200 674 NC_000913 4302462 A SNP 201 675 NC_000913 4303109 A SNP 202 676 NC_000913 4306957 A SNP 203 677 NC_000913 4310026 T SNP 204 678 NC_000913 4315749 T SNP 205 679 NC_000913 4316019 T SNP 206 680 NC_000913 4316390 T SNP 207 681 NC_000913 4316898 T SNP 208 682 NC_000913 4317597 T SNP 209 683 NC_000913 4317641 T SNP 210 684 NC_000913 4317944 T SNP 211 685 NC_000913 4318776 T SNP 212 686 NC_000913 4319494 T SNP 213 687 NC_000913 4325150 A SNP 214 688 NC_000913 4326061 A SNP 215 689 NC_000913 4329790 A SNP 216 690 NC_000913 4336958 T SNP 217 691 NC_000913 4339222 T SNP 218 692 NC_000913 4342807 T SNP 219 693 NC_000913 4353441 T SNP 220 694 NC_000913 4360665 T SNP 221 696 NC_000913 4363741 T SNP 222 697 NC_000913 4368175 T SNP 223 698 NC_000913 4369251 T SNP 224 699 NC_000913 4377648 T SNP 225 700 NC_000913 4380790 T SNP 226 701 NC_000913 4380900 T SNP 227 702 NC_000913 4382616 T SNP 228 703 NC_000913 4382970 T SNP 229 704 NC_000913 4391611 T SNP 230 705 NC_000913 4393631 T SNP 231 706 NC_000913 4393792 T SNP 232 707 NC_000913 4396787 T SNP 233 708 NC_000913 4399104 T SNP 234 709 NC_000913 4405238 T SNP 235 710 NC_000913 4410409 A SNP 236 711 NC_000913 4413615 A SNP 237 712 NC_000913 4435880 A SNP 238 713 NC_000913 4438359 A SNP 239 714 NC_000913 4438403 A SNP 240 715 NC_000913 4444962 A SNP 241 716 NC_000913 4447525 A SNP 242 717 NC_000913 4449507 A SNP 243 718 NC_000913 4461722 A SNP 244 719 NC_000913 4462867 A SNP 245 720 NC_000913 4477303 A SNP 246 721 NC_000913 4479109 A SNP 247 722 NC_000913 4479694 A MOB 248 773,774 NC_000913 4536236 IS5 1 4 SNP 249 723 NC_000913 4539264 T DEL 250 724 NC_000913 4542683 1 SNP 251 725 NC_000913 4545733 A SNP 252 726 NC_000913 4559285 A SNP 253 727 NC_000913 4561613 A SNP 254 728 NC_000913 4571292 A SNP 255 729 NC_000913 4572651 A SNP 256 730 NC_000913 4577641 A SNP 257 731 NC_000913 4600636 A SNP 258 732 NC_000913 4610221 A SNP 259 733 NC_000913 4613753 A RA 260 . NC_000913 860 0 C T consensus_score=338.6 frequency=1 major_base=T major_cov=39/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/56 RA 261 . NC_000913 10564 0 C T consensus_score=294.7 frequency=1 major_base=T major_cov=29/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/59 RA 262 . NC_000913 23291 0 C T consensus_score=300.6 frequency=1 major_base=T major_cov=42/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/44 RA 263 . NC_000913 25114 0 C T consensus_score=314.1 frequency=1 major_base=T major_cov=38/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/48 RA 264 . NC_000913 47652 0 G A consensus_score=243.8 frequency=1 major_base=A major_cov=31/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/38 RA 265 . NC_000913 58065 0 C A bias_e_value=0.000130592 bias_p_value=2.81348e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=162.3 fisher_strand_p_value=9.82046e-13 frequency=3.793e-01 ks_quality_p_value=1 major_base=C major_cov=29/43 major_frequency=6.207e-01 minor_base=A minor_cov=44/0 new_cov=44/0 polymorphism_frequency=3.793e-01 polymorphism_score=30.9 prediction=polymorphism ref_cov=29/43 total_cov=73/43 RA 266 . NC_000913 69531 0 G A consensus_score=252.5 frequency=1 major_base=A major_cov=38/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/33 RA 267 . NC_000913 71134 0 G A consensus_score=321.8 frequency=1 major_base=A major_cov=38/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/53 RA 268 . NC_000913 81556 0 G A consensus_score=330.5 frequency=1 major_base=A major_cov=35/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/58 RA 269 . NC_000913 85651 0 G T bias_e_value=309.925 bias_p_value=6.67705e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=194.2 fisher_strand_p_value=5.06067e-06 frequency=2.623e-01 ks_quality_p_value=1 major_base=G major_cov=35/55 major_frequency=7.377e-01 minor_base=T minor_cov=0/32 new_cov=0/32 polymorphism_frequency=2.623e-01 polymorphism_score=11.9 prediction=polymorphism ref_cov=35/55 total_cov=35/87 RA 270 . NC_000913 148424 0 C T consensus_score=359.3 frequency=1 major_base=T major_cov=34/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/67 RA 271 . NC_000913 193097 0 C A bias_e_value=156.703 bias_p_value=3.37602e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=206.0 fisher_strand_p_value=2.42351e-06 frequency=2.258e-01 ks_quality_p_value=1 major_base=C major_cov=34/38 major_frequency=7.742e-01 minor_base=A minor_cov=21/0 new_cov=21/0 polymorphism_frequency=2.258e-01 polymorphism_score=11.3 prediction=polymorphism ref_cov=34/38 total_cov=55/38 RA 272 . NC_000913 311511 0 G A consensus_score=578.5 frequency=1 major_base=A major_cov=92/70 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/70 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/70 RA 273 . NC_000913 332975 0 C A bias_e_value=37.9245 bias_p_value=8.17047e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=227.1 fisher_strand_p_value=5.28738e-07 frequency=2.019e-01 ks_quality_p_value=1 major_base=C major_cov=36/47 major_frequency=7.981e-01 minor_base=A minor_cov=21/0 new_cov=21/0 polymorphism_frequency=2.019e-01 polymorphism_score=12.3 prediction=polymorphism ref_cov=36/47 total_cov=57/47 RA 274 . NC_000913 378391 0 C T consensus_score=384.6 frequency=1 major_base=T major_cov=62/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/46 RA 275 . NC_000913 390948 0 C T consensus_score=617.4 frequency=1 major_base=T major_cov=84/83 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=84/83 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/83 RA 276 . NC_000913 418613 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=286.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=37/42 major_frequency=9.875e-01 minor_base=G minor_cov=0/1 new_cov=37/42 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/43 RA 277 . NC_000913 432880 0 C T consensus_score=420.5 frequency=1 major_base=T major_cov=54/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/59 RA 278 . NC_000913 438623 0 C T bias_e_value=3748470 bias_p_value=0.807573 consensus_score=218.5 fisher_strand_p_value=0.451613 frequency=1 ks_quality_p_value=0.991575 major_base=T major_cov=27/34 major_frequency=9.839e-01 minor_base=C minor_cov=1/0 new_cov=27/34 polymorphism_frequency=9.839e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/0 total_cov=28/35 RA 279 . NC_000913 441293 0 C T consensus_score=339.5 frequency=1 major_base=T major_cov=60/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/33 RA 280 . NC_000913 557635 0 A T consensus_score=302.7 frequency=1 major_base=T major_cov=49/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/35 RA 281 . NC_000913 566277 0 C T bias_e_value=2285220 bias_p_value=0.492328 consensus_reject=FREQUENCY_CUTOFF consensus_score=287.8 fisher_strand_p_value=0.182144 frequency=2.033e-01 ks_quality_p_value=1 major_base=C major_cov=47/51 major_frequency=7.967e-01 minor_base=T minor_cov=16/9 new_cov=16/9 polymorphism_frequency=2.033e-01 polymorphism_score=58.1 prediction=polymorphism ref_cov=47/51 total_cov=63/60 RA 282 . NC_000913 566323 0 C T bias_e_value=2189230 bias_p_value=0.471648 consensus_reject=FREQUENCY_CUTOFF consensus_score=270.6 fisher_strand_p_value=0.170235 frequency=2.051e-01 ks_quality_p_value=1 major_base=C major_cov=46/47 major_frequency=7.949e-01 minor_base=T minor_cov=16/8 new_cov=16/8 polymorphism_frequency=2.051e-01 polymorphism_score=56.2 prediction=polymorphism ref_cov=46/47 total_cov=63/55 RA 283 . NC_000913 566326 0 T C bias_e_value=2234840 bias_p_value=0.481474 consensus_reject=FREQUENCY_CUTOFF consensus_score=249.2 fisher_strand_p_value=0.175836 frequency=2.051e-01 ks_quality_p_value=1 major_base=T major_cov=47/46 major_frequency=7.949e-01 minor_base=C minor_cov=16/8 new_cov=16/8 polymorphism_frequency=2.051e-01 polymorphism_score=58.1 prediction=polymorphism ref_cov=47/46 total_cov=63/55 RA 284 . NC_000913 566332 0 T G bias_e_value=1985040 bias_p_value=0.427658 consensus_reject=FREQUENCY_CUTOFF consensus_score=237.9 fisher_strand_p_value=0.17007 frequency=2.000e-01 ks_quality_p_value=0.860708 major_base=T major_cov=47/49 major_frequency=8.000e-01 minor_base=G minor_cov=16/8 new_cov=16/8 polymorphism_frequency=2.000e-01 polymorphism_score=71.0 prediction=polymorphism ref_cov=47/49 total_cov=63/57 RA 285 . NC_000913 566414 0 A G bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=267.6 fisher_strand_p_value=1 frequency=2.033e-01 ks_quality_p_value=1 major_base=A major_cov=45/53 major_frequency=7.967e-01 minor_base=G minor_cov=11/14 new_cov=11/14 polymorphism_frequency=2.033e-01 polymorphism_score=59.6 prediction=polymorphism ref_cov=45/53 total_cov=56/67 RA 286 . NC_000913 566435 0 G A bias_e_value=4423420 bias_p_value=0.952985 consensus_reject=FREQUENCY_CUTOFF consensus_score=218.8 fisher_strand_p_value=0.709639 frequency=2.941e-01 ks_quality_p_value=0.999755 major_base=G major_cov=47/49 major_frequency=7.059e-01 minor_base=A minor_cov=18/22 new_cov=18/22 polymorphism_frequency=2.941e-01 polymorphism_score=107.7 prediction=polymorphism ref_cov=47/49 total_cov=65/71 RA 287 . NC_000913 566444 0 T C bias_e_value=4369400 bias_p_value=0.941346 consensus_reject=FREQUENCY_CUTOFF consensus_score=189.9 fisher_strand_p_value=0.857068 frequency=2.986e-01 ks_quality_p_value=0.790678 major_base=T major_cov=49/52 major_frequency=7.014e-01 minor_base=C minor_cov=20/23 new_cov=20/23 polymorphism_frequency=2.986e-01 polymorphism_score=124.4 prediction=polymorphism ref_cov=49/52 total_cov=69/75 RA 288 . NC_000913 566451 0 T C bias_e_value=4580330 bias_p_value=0.986788 consensus_reject=FREQUENCY_CUTOFF consensus_score=189.8 fisher_strand_p_value=1 frequency=3.113e-01 ks_quality_p_value=0.841914 major_base=T major_cov=51/53 major_frequency=6.887e-01 minor_base=C minor_cov=23/24 new_cov=23/24 polymorphism_frequency=3.113e-01 polymorphism_score=137.1 prediction=polymorphism ref_cov=51/53 total_cov=74/78 RA 289 . NC_000913 566463 0 T C bias_e_value=4596740 bias_p_value=0.990324 consensus_reject=FREQUENCY_CUTOFF consensus_score=184.1 fisher_strand_p_value=0.864152 frequency=3.290e-01 ks_quality_p_value=1 major_base=T major_cov=48/56 major_frequency=6.710e-01 minor_base=C minor_cov=25/26 new_cov=25/26 polymorphism_frequency=3.290e-01 polymorphism_score=146.3 prediction=polymorphism ref_cov=48/56 total_cov=73/82 RA 290 . NC_000913 566468 0 C T bias_e_value=4459350 bias_p_value=0.960725 consensus_reject=FREQUENCY_CUTOFF consensus_score=196.5 fisher_strand_p_value=0.738681 frequency=3.376e-01 ks_quality_p_value=0.992519 major_base=C major_cov=48/56 major_frequency=6.624e-01 minor_base=T minor_cov=26/27 new_cov=26/27 polymorphism_frequency=3.376e-01 polymorphism_score=151.2 prediction=polymorphism ref_cov=48/56 total_cov=74/83 RA 291 . NC_000913 566492 0 G T bias_e_value=3560640 bias_p_value=0.767106 consensus_reject=FREQUENCY_CUTOFF consensus_score=138.0 fisher_strand_p_value=0.426588 frequency=3.926e-01 ks_quality_p_value=0.939184 major_base=G major_cov=46/53 major_frequency=6.074e-01 minor_base=T minor_cov=34/30 new_cov=34/30 polymorphism_frequency=3.926e-01 polymorphism_score=193.2 prediction=polymorphism ref_cov=46/53 total_cov=80/83 RA 292 . NC_000913 566493 0 G A bias_e_value=3642210 bias_p_value=0.78468 consensus_reject=FREQUENCY_CUTOFF consensus_score=141.1 fisher_strand_p_value=0.426588 frequency=3.926e-01 ks_quality_p_value=0.985449 major_base=G major_cov=46/53 major_frequency=6.074e-01 minor_base=A minor_cov=34/30 new_cov=34/30 polymorphism_frequency=3.926e-01 polymorphism_score=185.8 prediction=polymorphism ref_cov=46/53 total_cov=80/83 RA 293 . NC_000913 566498 0 C T bias_e_value=2670400 bias_p_value=0.575313 consensus_reject=FREQUENCY_CUTOFF consensus_score=129.7 fisher_strand_p_value=0.428501 frequency=3.879e-01 ks_quality_p_value=0.548412 major_base=C major_cov=47/54 major_frequency=6.121e-01 minor_base=T minor_cov=34/30 new_cov=34/30 polymorphism_frequency=3.879e-01 polymorphism_score=189.1 prediction=polymorphism ref_cov=47/54 total_cov=81/84 RA 294 . NC_000913 566510 0 G C bias_e_value=3894370 bias_p_value=0.839005 consensus_reject=FREQUENCY_CUTOFF consensus_score=163.2 fisher_strand_p_value=0.525533 frequency=3.810e-01 ks_quality_p_value=0.930956 major_base=G major_cov=49/55 major_frequency=6.190e-01 minor_base=C minor_cov=34/30 new_cov=34/30 polymorphism_frequency=3.810e-01 polymorphism_score=228.5 prediction=polymorphism ref_cov=49/55 total_cov=83/85 RA 295 . NC_000913 566513 0 C T bias_e_value=3767980 bias_p_value=0.811775 consensus_reject=FREQUENCY_CUTOFF consensus_score=150.5 fisher_strand_p_value=0.525533 frequency=3.810e-01 ks_quality_p_value=0.862128 major_base=C major_cov=49/55 major_frequency=6.190e-01 minor_base=T minor_cov=34/30 new_cov=34/30 polymorphism_frequency=3.810e-01 polymorphism_score=185.4 prediction=polymorphism ref_cov=49/55 total_cov=83/85 RA 296 . NC_000913 566519 0 T C bias_e_value=3543640 bias_p_value=0.763444 consensus_reject=FREQUENCY_CUTOFF consensus_score=115.8 fisher_strand_p_value=0.424769 frequency=3.841e-01 ks_quality_p_value=0.933829 major_base=T major_cov=46/55 major_frequency=6.159e-01 minor_base=C minor_cov=33/30 new_cov=33/30 polymorphism_frequency=3.841e-01 polymorphism_score=196.1 prediction=polymorphism ref_cov=46/55 total_cov=80/85 RA 297 . NC_000913 566522 0 C A bias_e_value=2291560 bias_p_value=0.493695 consensus_reject=FREQUENCY_CUTOFF consensus_score=147.0 fisher_strand_p_value=0.338916 frequency=3.939e-01 ks_quality_p_value=0.539803 major_base=C major_cov=45/55 major_frequency=6.061e-01 minor_base=A minor_cov=35/30 new_cov=35/30 polymorphism_frequency=3.939e-01 polymorphism_score=184.0 prediction=polymorphism ref_cov=45/55 total_cov=80/85 RA 298 . NC_000913 566528 0 A G bias_e_value=3286890 bias_p_value=0.708129 consensus_reject=FREQUENCY_CUTOFF consensus_score=134.8 fisher_strand_p_value=0.341238 frequency=3.855e-01 ks_quality_p_value=1 major_base=A major_cov=46/56 major_frequency=6.145e-01 minor_base=G minor_cov=34/30 new_cov=34/30 polymorphism_frequency=3.855e-01 polymorphism_score=185.7 prediction=polymorphism ref_cov=46/56 total_cov=80/86 RA 299 . NC_000913 566530 1 . T bias_e_value=2991750 bias_p_value=0.644543 consensus_reject=FREQUENCY_CUTOFF consensus_score=136.7 fisher_strand_p_value=0.341238 frequency=3.855e-01 ks_quality_p_value=0.839388 major_base=. major_cov=46/56 major_frequency=6.145e-01 minor_base=T minor_cov=34/30 new_cov=34/30 polymorphism_frequency=3.855e-01 polymorphism_score=inf prediction=polymorphism ref_cov=46/56 total_cov=80/86 RA 300 . NC_000913 566532 0 A T bias_e_value=3682510 bias_p_value=0.793362 consensus_reject=FREQUENCY_CUTOFF consensus_score=199.0 fisher_strand_p_value=0.432146 frequency=3.787e-01 ks_quality_p_value=0.996281 major_base=A major_cov=49/56 major_frequency=6.213e-01 minor_base=T minor_cov=34/30 new_cov=34/30 polymorphism_frequency=3.787e-01 polymorphism_score=264.5 prediction=polymorphism ref_cov=49/56 total_cov=83/86 RA 301 . NC_000913 566535 0 T . bias_e_value=3173780 bias_p_value=0.683761 consensus_reject=FREQUENCY_CUTOFF consensus_score=383.3 fisher_strand_p_value=0.342369 frequency=3.626e-01 ks_quality_p_value=0.932467 major_base=T major_cov=51/58 major_frequency=6.374e-01 minor_base=. minor_cov=34/28 new_cov=34/28 polymorphism_frequency=3.626e-01 polymorphism_score=285.9 prediction=polymorphism ref_cov=51/58 total_cov=85/87 RA 302 . NC_000913 566536 0 G A bias_e_value=2710780 bias_p_value=0.584013 consensus_reject=FREQUENCY_CUTOFF consensus_score=198.1 fisher_strand_p_value=0.269596 frequency=3.563e-01 ks_quality_p_value=0.894137 major_base=G major_cov=51/61 major_frequency=6.437e-01 minor_base=A minor_cov=34/28 new_cov=34/28 polymorphism_frequency=3.563e-01 polymorphism_score=178.8 prediction=polymorphism ref_cov=51/61 total_cov=85/89 RA 303 . NC_000913 566543 0 A T bias_e_value=4290920 bias_p_value=0.924439 consensus_reject=FREQUENCY_CUTOFF consensus_score=229.2 fisher_strand_p_value=0.637357 frequency=3.678e-01 ks_quality_p_value=1 major_base=A major_cov=53/57 major_frequency=6.322e-01 minor_base=T minor_cov=34/30 new_cov=34/30 polymorphism_frequency=3.678e-01 polymorphism_score=266.0 prediction=polymorphism ref_cov=53/57 total_cov=87/87 RA 304 . NC_000913 566547 0 C A bias_e_value=3864640 bias_p_value=0.832601 consensus_reject=FREQUENCY_CUTOFF consensus_score=196.7 fisher_strand_p_value=0.52962 frequency=3.663e-01 ks_quality_p_value=0.907071 major_base=C major_cov=53/56 major_frequency=6.337e-01 minor_base=A minor_cov=34/29 new_cov=34/29 polymorphism_frequency=3.663e-01 polymorphism_score=176.3 prediction=polymorphism ref_cov=53/56 total_cov=87/85 RA 305 . NC_000913 566565 0 A G bias_e_value=4525370 bias_p_value=0.974949 consensus_reject=FREQUENCY_CUTOFF consensus_score=145.8 fisher_strand_p_value=0.875189 frequency=3.684e-01 ks_quality_p_value=0.896585 major_base=A major_cov=55/53 major_frequency=6.316e-01 minor_base=G minor_cov=33/30 new_cov=33/30 polymorphism_frequency=3.684e-01 polymorphism_score=187.3 prediction=polymorphism ref_cov=55/53 total_cov=88/83 RA 306 . NC_000913 566570 0 A C bias_e_value=4491590 bias_p_value=0.967671 consensus_reject=FREQUENCY_CUTOFF consensus_score=150.8 fisher_strand_p_value=0.756742 frequency=3.736e-01 ks_quality_p_value=1 major_base=A major_cov=56/53 major_frequency=6.264e-01 minor_base=C minor_cov=35/30 new_cov=35/30 polymorphism_frequency=3.736e-01 polymorphism_score=205.7 prediction=polymorphism ref_cov=56/53 total_cov=91/83 RA 307 . NC_000913 566597 0 T C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=131.6 fisher_strand_p_value=1 frequency=3.879e-01 ks_quality_p_value=1 major_base=T major_cov=54/47 major_frequency=6.121e-01 minor_base=C minor_cov=34/30 new_cov=34/30 polymorphism_frequency=3.879e-01 polymorphism_score=188.7 prediction=polymorphism ref_cov=54/47 total_cov=88/77 RA 308 . NC_000913 566651 0 T C bias_e_value=4118810 bias_p_value=0.887358 consensus_reject=FREQUENCY_CUTOFF consensus_score=143.6 fisher_strand_p_value=0.872959 frequency=3.647e-01 ks_quality_p_value=0.646788 major_base=T major_cov=60/48 major_frequency=6.353e-01 minor_base=C minor_cov=33/29 new_cov=33/29 polymorphism_frequency=3.647e-01 polymorphism_score=188.7 prediction=polymorphism ref_cov=60/48 total_cov=93/78 RA 309 . NC_000913 578331 0 G T bias_e_value=1078710 bias_p_value=0.232398 consensus_reject=FREQUENCY_CUTOFF consensus_score=226.1 fisher_strand_p_value=0.0612822 frequency=3.567e-01 ks_quality_p_value=1 major_base=G major_cov=33/68 major_frequency=6.433e-01 minor_base=T minor_cov=10/46 new_cov=10/46 polymorphism_frequency=3.567e-01 polymorphism_score=148.2 prediction=polymorphism ref_cov=33/68 total_cov=43/114 RA 310 . NC_000913 578427 0 G C bias_e_value=2190590 bias_p_value=0.471941 consensus_reject=FREQUENCY_CUTOFF consensus_score=94.4 fisher_strand_p_value=0.193753 frequency=4.313e-01 ks_quality_p_value=0.87947 major_base=G major_cov=40/51 major_frequency=5.687e-01 minor_base=C minor_cov=23/46 new_cov=23/46 polymorphism_frequency=4.313e-01 polymorphism_score=253.9 prediction=polymorphism ref_cov=40/51 total_cov=63/97 RA 311 . NC_000913 578571 0 C T bias_e_value=1014850 bias_p_value=0.21864 consensus_reject=FREQUENCY_CUTOFF consensus_score=106.3 fisher_strand_p_value=0.0564257 frequency=4.542e-01 ks_quality_p_value=1 major_base=C major_cov=93/38 major_frequency=5.458e-01 minor_base=T minor_cov=64/45 new_cov=64/45 polymorphism_frequency=4.542e-01 polymorphism_score=inf prediction=polymorphism ref_cov=93/38 total_cov=157/83 RA 312 . NC_000913 578574 0 A C bias_e_value=744716 bias_p_value=0.160442 consensus_reject=FREQUENCY_CUTOFF consensus_score=39.9 fisher_strand_p_value=0.0407329 frequency=4.463e-01 ks_quality_p_value=0.919241 major_base=A major_cov=96/38 major_frequency=5.537e-01 minor_base=C minor_cov=63/45 new_cov=63/45 polymorphism_frequency=4.463e-01 polymorphism_score=inf prediction=polymorphism ref_cov=96/38 total_cov=159/83 RA 313 . NC_000913 578605 0 T G bias_e_value=1379120 bias_p_value=0.297119 consensus_reject=FREQUENCY_CUTOFF consensus_score=35.7 fisher_strand_p_value=0.0863193 frequency=4.630e-01 ks_quality_p_value=0.996896 major_base=T major_cov=98/40 major_frequency=5.370e-01 minor_base=G minor_cov=72/47 new_cov=72/47 polymorphism_frequency=4.630e-01 polymorphism_score=inf prediction=polymorphism ref_cov=98/40 total_cov=171/87 RA 314 . NC_000913 578729 0 A G bias_e_value=4134460 bias_p_value=0.890729 consensus_reject=FREQUENCY_CUTOFF consensus_score=45.3 fisher_strand_p_value=1 frequency=4.531e-01 ks_quality_p_value=0.570573 major_base=A major_cov=94/46 major_frequency=5.469e-01 minor_base=G minor_cov=77/39 new_cov=77/39 polymorphism_frequency=4.531e-01 polymorphism_score=inf prediction=polymorphism ref_cov=94/46 total_cov=173/88 RA 315 . NC_000913 578809 0 T C bias_e_value=3094140 bias_p_value=0.666603 consensus_reject=FREQUENCY_CUTOFF consensus_score=48.7 fisher_strand_p_value=0.312789 frequency=5.139e-01 ks_quality_p_value=0.973572 major_base=C major_cov=67/62 major_frequency=5.139e-01 minor_base=T minor_cov=55/67 new_cov=67/62 polymorphism_frequency=5.139e-01 polymorphism_score=inf prediction=polymorphism ref_cov=55/67 total_cov=122/130 RA 316 . NC_000913 578811 0 T G bias_e_value=2815770 bias_p_value=0.606631 consensus_reject=FREQUENCY_CUTOFF consensus_score=80.6 fisher_strand_p_value=0.257332 frequency=5.120e-01 ks_quality_p_value=1 major_base=G major_cov=66/62 major_frequency=5.120e-01 minor_base=T minor_cov=54/68 new_cov=66/62 polymorphism_frequency=5.120e-01 polymorphism_score=inf prediction=polymorphism ref_cov=54/68 total_cov=121/130 RA 317 . NC_000913 578831 0 T C bias_e_value=994290 bias_p_value=0.21421 consensus_reject=FREQUENCY_CUTOFF consensus_score=36.8 fisher_strand_p_value=0.0548922 frequency=5.054e-01 ks_quality_p_value=1 major_base=C major_cov=74/67 major_frequency=5.054e-01 minor_base=T minor_cov=56/82 new_cov=74/67 polymorphism_frequency=5.054e-01 polymorphism_score=inf prediction=polymorphism ref_cov=56/82 total_cov=130/150 RA 318 . NC_000913 579004 0 C T bias_e_value=1792620 bias_p_value=0.386204 consensus_reject=FREQUENCY_CUTOFF consensus_score=23.9 fisher_strand_p_value=0.132444 frequency=4.968e-01 ks_quality_p_value=0.948426 major_base=C major_cov=54/105 major_frequency=5.032e-01 minor_base=T minor_cov=67/90 new_cov=67/90 polymorphism_frequency=4.968e-01 polymorphism_score=inf prediction=polymorphism ref_cov=54/105 total_cov=121/196 RA 319 . NC_000913 579099 0 A . bias_e_value=3808300 bias_p_value=0.820463 consensus_reject=FREQUENCY_CUTOFF consensus_score=inf fisher_strand_p_value=0.475606 frequency=5.175e-01 ks_quality_p_value=0.976065 major_base=. major_cov=69/79 major_frequency=5.175e-01 minor_base=A minor_cov=58/80 new_cov=69/79 polymorphism_frequency=5.175e-01 polymorphism_score=inf prediction=polymorphism ref_cov=58/80 total_cov=127/159 RA 320 . NC_000913 579127 0 T C bias_e_value=4018710 bias_p_value=0.865792 consensus_reject=FREQUENCY_CUTOFF consensus_score=77.3 fisher_strand_p_value=0.532511 frequency=5.352e-01 ks_quality_p_value=0.993237 major_base=C major_cov=68/69 major_frequency=5.352e-01 minor_base=T minor_cov=64/55 new_cov=68/69 polymorphism_frequency=5.352e-01 polymorphism_score=inf prediction=polymorphism ref_cov=64/55 total_cov=132/125 RA 321 . NC_000913 579134 0 T C bias_e_value=4019690 bias_p_value=0.866005 consensus_reject=FREQUENCY_CUTOFF consensus_score=78.7 fisher_strand_p_value=0.529244 frequency=5.357e-01 ks_quality_p_value=1 major_base=C major_cov=67/68 major_frequency=5.357e-01 minor_base=T minor_cov=63/54 new_cov=67/68 polymorphism_frequency=5.357e-01 polymorphism_score=inf prediction=polymorphism ref_cov=63/54 total_cov=130/122 RA 322 . NC_000913 579146 0 A G bias_e_value=3140390 bias_p_value=0.676568 consensus_reject=FREQUENCY_CUTOFF consensus_score=82.2 fisher_strand_p_value=0.313002 frequency=5.315e-01 ks_quality_p_value=1 major_base=G major_cov=69/66 major_frequency=5.315e-01 minor_base=A minor_cov=69/50 new_cov=69/66 polymorphism_frequency=5.315e-01 polymorphism_score=inf prediction=polymorphism ref_cov=69/50 total_cov=138/116 RA 323 . NC_000913 579271 0 G A bias_e_value=3812170 bias_p_value=0.821296 consensus_reject=FREQUENCY_CUTOFF consensus_score=120.4 fisher_strand_p_value=0.46531 frequency=5.684e-01 ks_quality_p_value=1 major_base=A major_cov=94/68 major_frequency=5.684e-01 minor_base=G minor_cov=77/46 new_cov=94/68 polymorphism_frequency=5.684e-01 polymorphism_score=inf prediction=polymorphism ref_cov=77/46 total_cov=172/116 RA 324 . NC_000913 579285 0 T C bias_e_value=2781820 bias_p_value=0.599316 consensus_reject=FREQUENCY_CUTOFF consensus_score=123.5 fisher_strand_p_value=0.903065 frequency=5.599e-01 ks_quality_p_value=0.279032 major_base=C major_cov=95/64 major_frequency=5.599e-01 minor_base=T minor_cov=76/49 new_cov=95/64 polymorphism_frequency=5.599e-01 polymorphism_score=inf prediction=polymorphism ref_cov=76/49 total_cov=172/113 RA 325 . NC_000913 579385 0 A G bias_e_value=3640690 bias_p_value=0.784352 consensus_reject=FREQUENCY_CUTOFF consensus_score=167.8 fisher_strand_p_value=0.437953 frequency=5.629e-01 ks_quality_p_value=0.959011 major_base=G major_cov=107/81 major_frequency=5.629e-01 minor_base=A minor_cov=76/70 new_cov=107/81 polymorphism_frequency=5.629e-01 polymorphism_score=inf prediction=polymorphism ref_cov=76/70 total_cov=183/151 RA 326 . NC_000913 579457 0 A G bias_e_value=3511570 bias_p_value=0.756534 consensus_reject=FREQUENCY_CUTOFF consensus_score=157.0 fisher_strand_p_value=0.503332 frequency=5.613e-01 ks_quality_p_value=0.773375 major_base=G major_cov=91/92 major_frequency=5.613e-01 minor_base=A minor_cov=77/66 new_cov=91/92 polymorphism_frequency=5.613e-01 polymorphism_score=inf prediction=polymorphism ref_cov=77/66 total_cov=169/158 RA 327 . NC_000913 579502 0 A G bias_e_value=1035290 bias_p_value=0.223042 consensus_reject=FREQUENCY_CUTOFF consensus_score=141.4 fisher_strand_p_value=0.256868 frequency=5.515e-01 ks_quality_p_value=0.225658 major_base=G major_cov=103/106 major_frequency=5.515e-01 minor_base=A minor_cov=94/76 new_cov=103/106 polymorphism_frequency=5.515e-01 polymorphism_score=inf prediction=polymorphism ref_cov=94/76 total_cov=197/182 RA 328 . NC_000913 579540 0 T C bias_e_value=1083140 bias_p_value=0.233353 consensus_reject=FREQUENCY_CUTOFF consensus_score=179.6 fisher_strand_p_value=0.0619029 frequency=5.550e-01 ks_quality_p_value=0.995501 major_base=C major_cov=92/115 major_frequency=5.550e-01 minor_base=T minor_cov=90/76 new_cov=92/115 polymorphism_frequency=5.550e-01 polymorphism_score=inf prediction=polymorphism ref_cov=90/76 total_cov=182/192 RA 329 . NC_000913 579651 0 C T bias_e_value=3522000 bias_p_value=0.758781 consensus_reject=FREQUENCY_CUTOFF consensus_score=104.9 fisher_strand_p_value=0.391653 frequency=5.486e-01 ks_quality_p_value=1 major_base=T major_cov=87/105 major_frequency=5.486e-01 minor_base=C minor_cov=79/79 new_cov=87/105 polymorphism_frequency=5.486e-01 polymorphism_score=inf prediction=polymorphism ref_cov=79/79 total_cov=166/184 RA 330 . NC_000913 579671 0 T C bias_e_value=2854250 bias_p_value=0.614922 consensus_reject=FREQUENCY_CUTOFF consensus_score=127.3 fisher_strand_p_value=0.263502 frequency=5.418e-01 ks_quality_p_value=0.999966 major_base=C major_cov=77/98 major_frequency=5.418e-01 minor_base=T minor_cov=75/73 new_cov=77/98 polymorphism_frequency=5.418e-01 polymorphism_score=inf prediction=polymorphism ref_cov=75/73 total_cov=154/171 RA 331 . NC_000913 579717 0 A C bias_e_value=2726120 bias_p_value=0.587316 consensus_reject=FREQUENCY_CUTOFF consensus_score=199.3 fisher_strand_p_value=0.388175 frequency=5.559e-01 ks_quality_p_value=0.627001 major_base=C major_cov=78/121 major_frequency=5.559e-01 minor_base=A minor_cov=70/89 new_cov=78/121 polymorphism_frequency=5.559e-01 polymorphism_score=inf prediction=polymorphism ref_cov=70/89 total_cov=148/210 RA 332 . NC_000913 579811 0 C T bias_e_value=4577480 bias_p_value=0.986175 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=7.7 fisher_strand_p_value=0.903323 frequency=5.214e-01 ks_quality_p_value=0.928122 major_base=T major_cov=59/87 major_frequency=5.214e-01 minor_base=C minor_cov=53/81 new_cov=59/87 polymorphism_frequency=5.214e-01 polymorphism_score=inf prediction=polymorphism ref_cov=53/81 total_cov=112/168 RA 333 . NC_000913 580020 0 G A bias_e_value=4614620 bias_p_value=0.994177 consensus_reject=FREQUENCY_CUTOFF consensus_score=21.9 fisher_strand_p_value=0.894041 frequency=5.133e-01 ks_quality_p_value=1 major_base=A major_cov=62/54 major_frequency=5.133e-01 minor_base=G minor_cov=57/53 new_cov=62/54 polymorphism_frequency=5.133e-01 polymorphism_score=inf prediction=polymorphism ref_cov=57/53 total_cov=119/107 RA 334 . NC_000913 580115 0 C T bias_e_value=4527290 bias_p_value=0.975363 consensus_reject=FREQUENCY_CUTOFF consensus_score=28.4 fisher_strand_p_value=0.786395 frequency=5.161e-01 ks_quality_p_value=1 major_base=T major_cov=62/50 major_frequency=5.161e-01 minor_base=C minor_cov=56/49 new_cov=62/50 polymorphism_frequency=5.161e-01 polymorphism_score=315.0 prediction=polymorphism ref_cov=56/49 total_cov=118/99 RA 335 . NC_000913 580119 0 A G bias_e_value=4613430 bias_p_value=0.993919 consensus_reject=FREQUENCY_CUTOFF consensus_score=35.6 fisher_strand_p_value=0.891766 frequency=5.092e-01 ks_quality_p_value=1 major_base=G major_cov=62/49 major_frequency=5.092e-01 minor_base=A minor_cov=58/49 new_cov=62/49 polymorphism_frequency=5.092e-01 polymorphism_score=inf prediction=polymorphism ref_cov=58/49 total_cov=120/98 RA 336 . NC_000913 580120 0 C T bias_e_value=4641650 bias_p_value=1 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=9.9 fisher_strand_p_value=1 frequency=5.115e-01 ks_quality_p_value=1 major_base=T major_cov=62/49 major_frequency=5.115e-01 minor_base=C minor_cov=59/47 new_cov=62/49 polymorphism_frequency=5.115e-01 polymorphism_score=inf prediction=polymorphism ref_cov=59/47 total_cov=123/96 RA 337 . NC_000913 580302 0 C T bias_e_value=4533770 bias_p_value=0.976759 consensus_reject=FREQUENCY_CUTOFF consensus_score=38.9 fisher_strand_p_value=0.798738 frequency=4.980e-01 ks_quality_p_value=0.991936 major_base=C major_cov=61/62 major_frequency=5.020e-01 minor_base=T minor_cov=63/59 new_cov=63/59 polymorphism_frequency=4.980e-01 polymorphism_score=inf prediction=polymorphism ref_cov=61/62 total_cov=124/121 RA 338 . NC_000913 580437 0 A C bias_e_value=4606620 bias_p_value=0.992453 consensus_reject=FREQUENCY_CUTOFF consensus_score=206.8 fisher_strand_p_value=0.879722 frequency=3.367e-01 ks_quality_p_value=0.999957 major_base=A major_cov=62/68 major_frequency=6.633e-01 minor_base=C minor_cov=30/36 new_cov=30/36 polymorphism_frequency=3.367e-01 polymorphism_score=195.3 prediction=polymorphism ref_cov=62/68 total_cov=92/104 RA 339 . NC_000913 580830 0 T A bias_e_value=2497580 bias_p_value=0.538079 consensus_reject=FREQUENCY_CUTOFF consensus_score=424.1 fisher_strand_p_value=0.218505 frequency=2.663e-01 ks_quality_p_value=0.962085 major_base=T major_cov=47/77 major_frequency=7.337e-01 minor_base=A minor_cov=22/23 new_cov=22/23 polymorphism_frequency=2.663e-01 polymorphism_score=177.4 prediction=polymorphism ref_cov=47/77 total_cov=69/100 RA 340 . NC_000913 580831 0 G A bias_e_value=2855690 bias_p_value=0.615231 consensus_reject=FREQUENCY_CUTOFF consensus_score=351.7 fisher_strand_p_value=0.285815 frequency=2.619e-01 ks_quality_p_value=0.922714 major_base=G major_cov=47/77 major_frequency=7.381e-01 minor_base=A minor_cov=21/23 new_cov=21/23 polymorphism_frequency=2.619e-01 polymorphism_score=116.5 prediction=polymorphism ref_cov=47/77 total_cov=68/100 RA 341 . NC_000913 581042 0 T G bias_e_value=4329630 bias_p_value=0.932778 consensus_reject=FREQUENCY_CUTOFF consensus_score=188.8 fisher_strand_p_value=0.656503 frequency=4.247e-01 ks_quality_p_value=1 major_base=T major_cov=51/56 major_frequency=5.753e-01 minor_base=G minor_cov=41/38 new_cov=41/38 polymorphism_frequency=4.247e-01 polymorphism_score=249.8 prediction=polymorphism ref_cov=51/56 total_cov=92/94 RA 342 . NC_000913 581056 0 A G bias_e_value=4079280 bias_p_value=0.878841 consensus_reject=FREQUENCY_CUTOFF consensus_score=205.5 fisher_strand_p_value=0.550052 frequency=4.054e-01 ks_quality_p_value=1 major_base=A major_cov=53/57 major_frequency=5.946e-01 minor_base=G minor_cov=40/35 new_cov=40/35 polymorphism_frequency=4.054e-01 polymorphism_score=225.4 prediction=polymorphism ref_cov=53/57 total_cov=93/92 RA 343 . NC_000913 581073 0 G A bias_e_value=4603860 bias_p_value=0.991859 consensus_reject=FREQUENCY_CUTOFF consensus_score=221.3 fisher_strand_p_value=0.875812 frequency=3.905e-01 ks_quality_p_value=0.999233 major_base=G major_cov=50/53 major_frequency=6.095e-01 minor_base=A minor_cov=33/33 new_cov=33/33 polymorphism_frequency=3.905e-01 polymorphism_score=193.0 prediction=polymorphism ref_cov=50/53 total_cov=83/87 RA 344 . NC_000913 581118 0 T C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=158.1 fisher_strand_p_value=1 frequency=4.114e-01 ks_quality_p_value=1 major_base=T major_cov=47/46 major_frequency=5.886e-01 minor_base=C minor_cov=33/32 new_cov=33/32 polymorphism_frequency=4.114e-01 polymorphism_score=193.7 prediction=polymorphism ref_cov=47/46 total_cov=80/78 RA 345 . NC_000913 581127 0 G A bias_e_value=4543300 bias_p_value=0.978811 consensus_reject=FREQUENCY_CUTOFF consensus_score=153.6 fisher_strand_p_value=0.870783 frequency=4.156e-01 ks_quality_p_value=0.920244 major_base=G major_cov=48/42 major_frequency=5.844e-01 minor_base=A minor_cov=33/31 new_cov=33/31 polymorphism_frequency=4.156e-01 polymorphism_score=186.8 prediction=polymorphism ref_cov=48/42 total_cov=81/73 RA 346 . NC_000913 581133 0 A G bias_e_value=4268500 bias_p_value=0.919609 consensus_reject=FREQUENCY_CUTOFF consensus_score=145.5 fisher_strand_p_value=0.629612 frequency=4.114e-01 ks_quality_p_value=0.995579 major_base=A major_cov=47/46 major_frequency=5.886e-01 minor_base=G minor_cov=30/35 new_cov=30/35 polymorphism_frequency=4.114e-01 polymorphism_score=196.8 prediction=polymorphism ref_cov=47/46 total_cov=77/81 RA 347 . NC_000913 581227 0 A C bias_e_value=4573370 bias_p_value=0.985289 consensus_reject=FREQUENCY_CUTOFF consensus_score=29.1 fisher_strand_p_value=0.868252 frequency=4.414e-01 ks_quality_p_value=0.959915 major_base=A major_cov=38/43 major_frequency=5.586e-01 minor_base=C minor_cov=29/35 new_cov=29/35 polymorphism_frequency=4.414e-01 polymorphism_score=213.3 prediction=polymorphism ref_cov=38/43 total_cov=67/78 RA 348 . NC_000913 631633 0 G A consensus_score=300.1 frequency=1 major_base=A major_cov=49/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/33 RA 349 . NC_000913 722194 0 G A consensus_score=327.3 frequency=1 major_base=A major_cov=44/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/49 RA 350 . NC_000913 736420 0 C T bias_e_value=3936560 bias_p_value=0.848094 consensus_score=584.6 fisher_strand_p_value=0.5022 frequency=1 ks_quality_p_value=1 major_base=T major_cov=75/90 major_frequency=9.880e-01 minor_base=C minor_cov=0/2 new_cov=75/90 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=75/92 RA 351 . NC_000913 781595 0 G A bias_e_value=874595 bias_p_value=0.188423 consensus_score=222.3 fisher_strand_p_value=0.0462548 frequency=1 ks_quality_p_value=1 major_base=A major_cov=48/22 major_frequency=9.333e-01 minor_base=G minor_cov=1/4 new_cov=48/22 polymorphism_frequency=9.333e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/4 total_cov=49/26 RA 352 . NC_000913 825235 0 T G bias_e_value=0.854896 bias_p_value=1.84179e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=227.1 fisher_strand_p_value=9.45645e-09 frequency=2.462e-01 ks_quality_p_value=1 major_base=T major_cov=50/48 major_frequency=7.538e-01 minor_base=G minor_cov=0/32 new_cov=0/32 polymorphism_frequency=2.462e-01 polymorphism_score=12.4 prediction=polymorphism ref_cov=50/48 total_cov=50/80 RA 353 . NC_000913 847955 0 G A bias_e_value=0.0147924 bias_p_value=3.18689e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=219.0 fisher_strand_p_value=1.34292e-10 frequency=2.624e-01 ks_quality_p_value=1 major_base=G major_cov=56/48 major_frequency=7.376e-01 minor_base=A minor_cov=0/37 new_cov=0/37 polymorphism_frequency=2.624e-01 polymorphism_score=33.1 prediction=polymorphism ref_cov=56/48 total_cov=56/85 RA 354 . NC_000913 905876 0 G T bias_e_value=2.03273 bias_p_value=4.37932e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=87.9 fisher_strand_p_value=2.35925e-08 frequency=3.889e-01 ks_quality_p_value=1 major_base=G major_cov=27/17 major_frequency=6.111e-01 minor_base=T minor_cov=0/28 new_cov=0/28 polymorphism_frequency=3.889e-01 polymorphism_score=15.6 prediction=polymorphism ref_cov=27/17 total_cov=27/45 RA 355 . NC_000913 987152 0 G T consensus_score=568.7 frequency=1 major_base=T major_cov=104/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=104/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=104/51 RA 356 . NC_000913 1097118 0 C A bias_e_value=1798350 bias_p_value=0.387437 consensus_reject=FREQUENCY_CUTOFF consensus_score=46.6 fisher_strand_p_value=0.136805 frequency=3.023e-01 ks_quality_p_value=0.922544 major_base=C major_cov=6/24 major_frequency=6.977e-01 minor_base=A minor_cov=6/7 new_cov=6/7 polymorphism_frequency=3.023e-01 polymorphism_score=32.1 prediction=polymorphism ref_cov=6/24 total_cov=12/31 RA 357 . NC_000913 1196220 0 C T consensus_score=171.8 frequency=1 major_base=T major_cov=26/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/31 RA 358 . NC_000913 1196232 0 C T consensus_score=148.3 frequency=1 major_base=T major_cov=25/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/26 RA 359 . NC_000913 1196245 0 T C consensus_score=137.7 frequency=1 major_base=C major_cov=24/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/24 RA 360 . NC_000913 1196247 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=141.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=24/24 major_frequency=9.796e-01 minor_base=A minor_cov=1/0 new_cov=24/24 polymorphism_frequency=9.796e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=25/24 RA 361 . NC_000913 1196277 0 C T consensus_score=99.4 frequency=1 major_base=T major_cov=20/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/17 RA 362 . NC_000913 1196280 0 G C consensus_score=96.4 frequency=1 major_base=C major_cov=20/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/17 RA 363 . NC_000913 1196283 0 A G consensus_score=102.8 frequency=1 major_base=G major_cov=20/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/17 RA 364 . NC_000913 1196292 0 C T consensus_score=97.4 frequency=1 major_base=T major_cov=20/16 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/16 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/16 RA 365 . NC_000913 1196304 0 G A consensus_score=87.5 deleted=1 frequency=1 major_base=A major_cov=19/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/15 RA 366 . NC_000913 1196316 0 T A consensus_score=74.8 deleted=1 frequency=1 major_base=A major_cov=16/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/14 RA 367 . NC_000913 1196325 0 A G consensus_score=56.5 deleted=1 frequency=1 major_base=G major_cov=15/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/9 RA 368 . NC_000913 1196352 0 C A consensus_score=27.2 deleted=1 frequency=1 major_base=A major_cov=11/3 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/3 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/3 RA 369 . NC_000913 1290881 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=502.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=66/70 major_frequency=9.927e-01 minor_base=C minor_cov=0/1 new_cov=66/70 polymorphism_frequency=9.927e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=66/71 RA 370 . NC_000913 1312633 0 C T consensus_score=357.2 frequency=1 major_base=T major_cov=56/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/45 RA 371 . NC_000913 1334966 0 A C bias_e_value=0.00301904 bias_p_value=6.50424e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=249.5 fisher_strand_p_value=2.56197e-11 frequency=2.690e-01 ks_quality_p_value=1 major_base=A major_cov=48/58 major_frequency=7.310e-01 minor_base=C minor_cov=39/0 new_cov=39/0 polymorphism_frequency=2.690e-01 polymorphism_score=17.6 prediction=polymorphism ref_cov=48/58 total_cov=87/58 RA 372 . NC_000913 1337394 0 A G consensus_score=367.0 frequency=1 major_base=G major_cov=54/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/48 RA 373 . NC_000913 1353758 0 T A bias_e_value=4641070 bias_p_value=0.999874 consensus_score=316.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.984147 major_base=A major_cov=46/43 major_frequency=9.889e-01 minor_base=G minor_cov=1/0 new_cov=46/43 polymorphism_frequency=9.889e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/0 total_cov=47/43 RA 374 . NC_000913 1423244 0 G C bias_e_value=4201670 bias_p_value=0.90521 consensus_reject=FREQUENCY_CUTOFF consensus_score=243.5 fisher_strand_p_value=0.597494 frequency=2.209e-01 ks_quality_p_value=1 major_base=G major_cov=40/27 major_frequency=7.791e-01 minor_base=C minor_cov=13/6 new_cov=13/6 polymorphism_frequency=2.209e-01 polymorphism_score=56.4 prediction=polymorphism ref_cov=40/27 total_cov=53/33 RA 375 . NC_000913 1423272 0 C T bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=234.0 fisher_strand_p_value=1 frequency=2.574e-01 ks_quality_p_value=1 major_base=C major_cov=47/28 major_frequency=7.426e-01 minor_base=T minor_cov=17/9 new_cov=17/9 polymorphism_frequency=2.574e-01 polymorphism_score=66.5 prediction=polymorphism ref_cov=47/28 total_cov=64/37 RA 376 . NC_000913 1423273 0 G A bias_e_value=4580640 bias_p_value=0.986855 consensus_reject=FREQUENCY_CUTOFF consensus_score=223.9 fisher_strand_p_value=1 frequency=2.574e-01 ks_quality_p_value=0.842302 major_base=G major_cov=48/27 major_frequency=7.426e-01 minor_base=A minor_cov=17/9 new_cov=17/9 polymorphism_frequency=2.574e-01 polymorphism_score=69.2 prediction=polymorphism ref_cov=48/27 total_cov=65/36 RA 377 . NC_000913 1423283 0 A C bias_e_value=4640420 bias_p_value=0.999735 consensus_reject=FREQUENCY_CUTOFF consensus_score=216.6 fisher_strand_p_value=1 frequency=2.476e-01 ks_quality_p_value=0.977083 major_base=A major_cov=51/28 major_frequency=7.524e-01 minor_base=C minor_cov=17/9 new_cov=17/9 polymorphism_frequency=2.476e-01 polymorphism_score=73.6 prediction=polymorphism ref_cov=51/28 total_cov=68/37 RA 378 . NC_000913 1423284 0 A C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=216.9 fisher_strand_p_value=1 frequency=2.476e-01 ks_quality_p_value=1 major_base=A major_cov=51/28 major_frequency=7.524e-01 minor_base=C minor_cov=17/9 new_cov=17/9 polymorphism_frequency=2.476e-01 polymorphism_score=71.2 prediction=polymorphism ref_cov=51/28 total_cov=68/37 RA 379 . NC_000913 1423338 0 G C bias_e_value=4273830 bias_p_value=0.920757 consensus_reject=FREQUENCY_CUTOFF consensus_score=294.5 fisher_strand_p_value=0.648915 frequency=2.321e-01 ks_quality_p_value=0.969767 major_base=G major_cov=50/36 major_frequency=7.679e-01 minor_base=C minor_cov=17/9 new_cov=17/9 polymorphism_frequency=2.321e-01 polymorphism_score=84.4 prediction=polymorphism ref_cov=50/36 total_cov=67/45 RA 380 . NC_000913 1423404 0 G T bias_e_value=4321470 bias_p_value=0.93102 consensus_reject=FREQUENCY_CUTOFF consensus_score=309.2 fisher_strand_p_value=0.652357 frequency=2.167e-01 ks_quality_p_value=1 major_base=G major_cov=55/39 major_frequency=7.833e-01 minor_base=T minor_cov=17/9 new_cov=17/9 polymorphism_frequency=2.167e-01 polymorphism_score=65.3 prediction=polymorphism ref_cov=55/39 total_cov=72/48 RA 381 . NC_000913 1427992 0 G T bias_e_value=3.96033 bias_p_value=8.53217e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=144.3 fisher_strand_p_value=4.77815e-08 frequency=3.509e-01 ks_quality_p_value=1 major_base=G major_cov=32/42 major_frequency=6.491e-01 minor_base=T minor_cov=0/40 new_cov=0/40 polymorphism_frequency=3.509e-01 polymorphism_score=13.7 prediction=polymorphism ref_cov=32/42 total_cov=32/82 RA 382 . NC_000913 1429027 0 C T bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=262.7 fisher_strand_p_value=1 frequency=2.069e-01 ks_quality_p_value=1 major_base=C major_cov=37/55 major_frequency=7.931e-01 minor_base=T minor_cov=9/15 new_cov=9/15 polymorphism_frequency=2.069e-01 polymorphism_score=58.0 prediction=polymorphism ref_cov=37/55 total_cov=46/70 RA 383 . NC_000913 1429069 0 T A bias_e_value=4568500 bias_p_value=0.98424 consensus_reject=FREQUENCY_CUTOFF consensus_score=284.5 fisher_strand_p_value=0.828739 frequency=2.645e-01 ks_quality_p_value=0.998863 major_base=T major_cov=31/58 major_frequency=7.355e-01 minor_base=A minor_cov=10/22 new_cov=10/22 polymorphism_frequency=2.645e-01 polymorphism_score=123.8 prediction=polymorphism ref_cov=31/58 total_cov=41/80 RA 384 . NC_000913 1429072 0 A C bias_e_value=4551280 bias_p_value=0.98053 consensus_reject=FREQUENCY_CUTOFF consensus_score=188.7 fisher_strand_p_value=0.828739 frequency=2.645e-01 ks_quality_p_value=0.976508 major_base=A major_cov=31/58 major_frequency=7.355e-01 minor_base=C minor_cov=10/22 new_cov=10/22 polymorphism_frequency=2.645e-01 polymorphism_score=98.0 prediction=polymorphism ref_cov=31/58 total_cov=41/80 RA 385 . NC_000913 1429111 0 A C bias_e_value=4519600 bias_p_value=0.973704 consensus_reject=FREQUENCY_CUTOFF consensus_score=159.2 fisher_strand_p_value=0.842666 frequency=3.016e-01 ks_quality_p_value=0.925177 major_base=A major_cov=32/56 major_frequency=6.984e-01 minor_base=C minor_cov=13/25 new_cov=13/25 polymorphism_frequency=3.016e-01 polymorphism_score=119.7 prediction=polymorphism ref_cov=32/56 total_cov=45/81 RA 386 . NC_000913 1429114 0 C T bias_e_value=4579470 bias_p_value=0.986604 consensus_reject=FREQUENCY_CUTOFF consensus_score=195.3 fisher_strand_p_value=0.840845 frequency=3.016e-01 ks_quality_p_value=1 major_base=C major_cov=33/55 major_frequency=6.984e-01 minor_base=T minor_cov=13/25 new_cov=13/25 polymorphism_frequency=3.016e-01 polymorphism_score=100.5 prediction=polymorphism ref_cov=33/55 total_cov=46/80 RA 387 . NC_000913 1429126 0 A C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=126.8 fisher_strand_p_value=1 frequency=3.433e-01 ks_quality_p_value=0.999941 major_base=A major_cov=31/57 major_frequency=6.567e-01 minor_base=C minor_cov=16/30 new_cov=16/30 polymorphism_frequency=3.433e-01 polymorphism_score=145.3 prediction=polymorphism ref_cov=31/57 total_cov=47/87 RA 388 . NC_000913 1429128 0 A G bias_e_value=4641510 bias_p_value=0.99997 consensus_reject=FREQUENCY_CUTOFF consensus_score=148.0 fisher_strand_p_value=1 frequency=3.433e-01 ks_quality_p_value=0.992228 major_base=A major_cov=31/57 major_frequency=6.567e-01 minor_base=G minor_cov=16/30 new_cov=16/30 polymorphism_frequency=3.433e-01 polymorphism_score=129.9 prediction=polymorphism ref_cov=31/57 total_cov=47/87 RA 389 . NC_000913 1429160 0 C G bias_e_value=3863000 bias_p_value=0.832247 consensus_reject=FREQUENCY_CUTOFF consensus_score=132.1 fisher_strand_p_value=0.480932 frequency=3.957e-01 ks_quality_p_value=0.997897 major_base=C major_cov=30/54 major_frequency=6.043e-01 minor_base=G minor_cov=23/32 new_cov=23/32 polymorphism_frequency=3.957e-01 polymorphism_score=185.1 prediction=polymorphism ref_cov=30/54 total_cov=53/86 RA 390 . NC_000913 1429164 0 C G bias_e_value=3828170 bias_p_value=0.824744 consensus_reject=FREQUENCY_CUTOFF consensus_score=129.1 fisher_strand_p_value=0.474379 frequency=3.986e-01 ks_quality_p_value=0.990442 major_base=C major_cov=29/54 major_frequency=6.014e-01 minor_base=G minor_cov=23/32 new_cov=23/32 polymorphism_frequency=3.986e-01 polymorphism_score=186.0 prediction=polymorphism ref_cov=29/54 total_cov=53/86 RA 391 . NC_000913 1429171 0 A G bias_e_value=4450170 bias_p_value=0.958747 consensus_reject=FREQUENCY_CUTOFF consensus_score=77.6 fisher_strand_p_value=0.726868 frequency=4.143e-01 ks_quality_p_value=1 major_base=A major_cov=30/52 major_frequency=5.857e-01 minor_base=G minor_cov=23/35 new_cov=23/35 polymorphism_frequency=4.143e-01 polymorphism_score=175.0 prediction=polymorphism ref_cov=30/52 total_cov=53/87 RA 392 . NC_000913 1429204 0 C T bias_e_value=4128020 bias_p_value=0.889342 consensus_reject=FREQUENCY_CUTOFF consensus_score=54.4 fisher_strand_p_value=0.595951 frequency=4.485e-01 ks_quality_p_value=0.953283 major_base=C major_cov=26/49 major_frequency=5.515e-01 minor_base=T minor_cov=24/37 new_cov=24/37 polymorphism_frequency=4.485e-01 polymorphism_score=182.3 prediction=polymorphism ref_cov=26/49 total_cov=50/86 RA 393 . NC_000913 1429207 0 T G bias_e_value=4461400 bias_p_value=0.961166 consensus_reject=FREQUENCY_CUTOFF consensus_score=26.6 fisher_strand_p_value=0.858574 frequency=4.519e-01 ks_quality_p_value=0.855583 major_base=T major_cov=27/47 major_frequency=5.481e-01 minor_base=G minor_cov=24/37 new_cov=24/37 polymorphism_frequency=4.519e-01 polymorphism_score=198.3 prediction=polymorphism ref_cov=27/47 total_cov=51/84 RA 394 . NC_000913 1429225 0 C T bias_e_value=4431770 bias_p_value=0.954783 consensus_reject=FREQUENCY_CUTOFF consensus_score=114.7 fisher_strand_p_value=0.714762 frequency=3.858e-01 ks_quality_p_value=1 major_base=C major_cov=35/43 major_frequency=6.142e-01 minor_base=T minor_cov=20/29 new_cov=20/29 polymorphism_frequency=3.858e-01 polymorphism_score=135.5 prediction=polymorphism ref_cov=35/43 total_cov=55/72 RA 395 . NC_000913 1429228 0 T C bias_e_value=3770320 bias_p_value=0.81228 consensus_reject=FREQUENCY_CUTOFF consensus_score=68.4 fisher_strand_p_value=0.458848 frequency=4.050e-01 ks_quality_p_value=0.988814 major_base=T major_cov=35/37 major_frequency=5.950e-01 minor_base=C minor_cov=20/29 new_cov=20/29 polymorphism_frequency=4.050e-01 polymorphism_score=152.8 prediction=polymorphism ref_cov=35/37 total_cov=55/66 RA 396 . NC_000913 1429231 0 T C bias_e_value=3485280 bias_p_value=0.75087 consensus_reject=FREQUENCY_CUTOFF consensus_score=65.1 fisher_strand_p_value=0.458755 frequency=4.016e-01 ks_quality_p_value=0.835544 major_base=T major_cov=36/37 major_frequency=5.984e-01 minor_base=C minor_cov=20/29 new_cov=20/29 polymorphism_frequency=4.016e-01 polymorphism_score=148.6 prediction=polymorphism ref_cov=36/37 total_cov=56/66 RA 397 . NC_000913 1429235 0 T C bias_e_value=3068540 bias_p_value=0.661089 consensus_reject=FREQUENCY_CUTOFF consensus_score=62.2 fisher_strand_p_value=0.352725 frequency=4.083e-01 ks_quality_p_value=0.850278 major_base=T major_cov=36/35 major_frequency=5.917e-01 minor_base=C minor_cov=20/29 new_cov=20/29 polymorphism_frequency=4.083e-01 polymorphism_score=147.8 prediction=polymorphism ref_cov=36/35 total_cov=56/64 RA 398 . NC_000913 1429236 0 T A bias_e_value=2157690 bias_p_value=0.464854 consensus_reject=FREQUENCY_CUTOFF consensus_score=92.5 fisher_strand_p_value=0.263689 frequency=4.153e-01 ks_quality_p_value=0.63113 major_base=T major_cov=36/33 major_frequency=5.847e-01 minor_base=A minor_cov=20/29 new_cov=20/29 polymorphism_frequency=4.153e-01 polymorphism_score=203.4 prediction=polymorphism ref_cov=36/33 total_cov=56/62 RA 399 . NC_000913 1429240 0 G T bias_e_value=2719060 bias_p_value=0.585796 consensus_reject=FREQUENCY_CUTOFF consensus_score=76.5 fisher_strand_p_value=0.269376 frequency=4.118e-01 ks_quality_p_value=0.89953 major_base=G major_cov=36/34 major_frequency=5.882e-01 minor_base=T minor_cov=20/29 new_cov=20/29 polymorphism_frequency=4.118e-01 polymorphism_score=150.2 prediction=polymorphism ref_cov=36/34 total_cov=56/63 RA 400 . NC_000913 1429243 0 A C bias_e_value=2365180 bias_p_value=0.509555 consensus_reject=FREQUENCY_CUTOFF consensus_score=61.1 fisher_strand_p_value=0.197058 frequency=3.967e-01 ks_quality_p_value=0.976501 major_base=A major_cov=38/35 major_frequency=6.033e-01 minor_base=C minor_cov=19/29 new_cov=19/29 polymorphism_frequency=3.967e-01 polymorphism_score=155.5 prediction=polymorphism ref_cov=38/35 total_cov=57/64 RA 401 . NC_000913 1429246 0 A T bias_e_value=1930330 bias_p_value=0.415872 consensus_reject=FREQUENCY_CUTOFF consensus_score=85.4 fisher_strand_p_value=0.193892 frequency=4.153e-01 ks_quality_p_value=0.723668 major_base=A major_cov=37/32 major_frequency=5.847e-01 minor_base=T minor_cov=20/29 new_cov=20/29 polymorphism_frequency=4.153e-01 polymorphism_score=210.4 prediction=polymorphism ref_cov=37/32 total_cov=57/62 RA 402 . NC_000913 1429249 0 C T bias_e_value=2870810 bias_p_value=0.618489 consensus_reject=FREQUENCY_CUTOFF consensus_score=91.9 fisher_strand_p_value=0.266179 frequency=4.083e-01 ks_quality_p_value=1 major_base=C major_cov=37/34 major_frequency=5.917e-01 minor_base=T minor_cov=20/29 new_cov=20/29 polymorphism_frequency=4.083e-01 polymorphism_score=141.0 prediction=polymorphism ref_cov=37/34 total_cov=57/63 RA 403 . NC_000913 1429252 0 G A bias_e_value=2418350 bias_p_value=0.521011 consensus_reject=FREQUENCY_CUTOFF consensus_score=88.0 fisher_strand_p_value=0.199456 frequency=4.202e-01 ks_quality_p_value=1 major_base=G major_cov=36/33 major_frequency=5.798e-01 minor_base=A minor_cov=20/30 new_cov=20/30 polymorphism_frequency=4.202e-01 polymorphism_score=136.9 prediction=polymorphism ref_cov=36/33 total_cov=56/63 RA 404 . NC_000913 1429255 0 G A bias_e_value=1993980 bias_p_value=0.429585 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.3 fisher_strand_p_value=0.349897 frequency=4.068e-01 ks_quality_p_value=0.421225 major_base=G major_cov=36/34 major_frequency=5.932e-01 minor_base=A minor_cov=20/28 new_cov=20/28 polymorphism_frequency=4.068e-01 polymorphism_score=138.5 prediction=polymorphism ref_cov=36/34 total_cov=56/63 RA 405 . NC_000913 1429258 0 A G bias_e_value=3330770 bias_p_value=0.717583 consensus_reject=FREQUENCY_CUTOFF consensus_score=71.5 fisher_strand_p_value=0.350138 frequency=4.153e-01 ks_quality_p_value=1 major_base=A major_cov=35/34 major_frequency=5.847e-01 minor_base=G minor_cov=20/29 new_cov=20/29 polymorphism_frequency=4.153e-01 polymorphism_score=139.9 prediction=polymorphism ref_cov=35/34 total_cov=56/63 RA 406 . NC_000913 1429261 0 T C bias_e_value=2764030 bias_p_value=0.595484 consensus_reject=FREQUENCY_CUTOFF consensus_score=61.3 fisher_strand_p_value=0.269376 frequency=4.118e-01 ks_quality_p_value=0.925158 major_base=T major_cov=36/34 major_frequency=5.882e-01 minor_base=C minor_cov=20/29 new_cov=20/29 polymorphism_frequency=4.118e-01 polymorphism_score=147.4 prediction=polymorphism ref_cov=36/34 total_cov=56/63 RA 407 . NC_000913 1429273 0 T C bias_e_value=2401040 bias_p_value=0.517282 consensus_reject=FREQUENCY_CUTOFF consensus_score=56.6 fisher_strand_p_value=0.206452 frequency=4.206e-01 ks_quality_p_value=0.954949 major_base=T major_cov=41/32 major_frequency=5.794e-01 minor_base=C minor_cov=23/30 new_cov=23/30 polymorphism_frequency=4.206e-01 polymorphism_score=163.0 prediction=polymorphism ref_cov=41/32 total_cov=64/62 RA 408 . NC_000913 1429291 0 T A bias_e_value=2823920 bias_p_value=0.608387 consensus_reject=FREQUENCY_CUTOFF consensus_score=107.7 fisher_strand_p_value=0.258628 frequency=4.103e-01 ks_quality_p_value=1 major_base=T major_cov=40/29 major_frequency=5.897e-01 minor_base=A minor_cov=22/26 new_cov=22/26 polymorphism_frequency=4.103e-01 polymorphism_score=192.5 prediction=polymorphism ref_cov=40/29 total_cov=62/56 RA 409 . NC_000913 1429297 0 C G bias_e_value=1244450 bias_p_value=0.268106 consensus_reject=FREQUENCY_CUTOFF consensus_score=102.8 fisher_strand_p_value=0.0897468 frequency=4.000e-01 ks_quality_p_value=0.830683 major_base=C major_cov=40/29 major_frequency=6.000e-01 minor_base=G minor_cov=19/27 new_cov=19/27 polymorphism_frequency=4.000e-01 polymorphism_score=154.4 prediction=polymorphism ref_cov=40/29 total_cov=59/56 RA 410 . NC_000913 1429300 0 T G bias_e_value=2227600 bias_p_value=0.479915 consensus_reject=FREQUENCY_CUTOFF consensus_score=64.9 fisher_strand_p_value=0.18387 frequency=4.107e-01 ks_quality_p_value=0.951435 major_base=T major_cov=36/30 major_frequency=5.893e-01 minor_base=G minor_cov=19/27 new_cov=19/27 polymorphism_frequency=4.107e-01 polymorphism_score=142.3 prediction=polymorphism ref_cov=36/30 total_cov=55/57 RA 411 . NC_000913 1429319 0 G T bias_e_value=2684100 bias_p_value=0.578264 consensus_reject=FREQUENCY_CUTOFF consensus_score=85.6 fisher_strand_p_value=0.240076 frequency=4.074e-01 ks_quality_p_value=0.987349 major_base=G major_cov=36/28 major_frequency=5.926e-01 minor_base=T minor_cov=19/25 new_cov=19/25 polymorphism_frequency=4.074e-01 polymorphism_score=132.8 prediction=polymorphism ref_cov=36/28 total_cov=55/53 RA 412 . NC_000913 1429345 0 T G bias_e_value=2679940 bias_p_value=0.577367 consensus_reject=FREQUENCY_CUTOFF consensus_score=76.7 fisher_strand_p_value=0.333409 frequency=3.929e-01 ks_quality_p_value=0.709089 major_base=T major_cov=37/31 major_frequency=6.071e-01 minor_base=G minor_cov=19/25 new_cov=19/25 polymorphism_frequency=3.929e-01 polymorphism_score=135.9 prediction=polymorphism ref_cov=37/31 total_cov=56/56 RA 413 . NC_000913 1429353 0 C T bias_e_value=2637720 bias_p_value=0.568273 consensus_reject=FREQUENCY_CUTOFF consensus_score=115.6 fisher_strand_p_value=0.2381 frequency=3.578e-01 ks_quality_p_value=0.966686 major_base=C major_cov=39/31 major_frequency=6.422e-01 minor_base=T minor_cov=17/22 new_cov=17/22 polymorphism_frequency=3.578e-01 polymorphism_score=107.9 prediction=polymorphism ref_cov=39/31 total_cov=56/53 RA 414 . NC_000913 1429354 0 A G bias_e_value=2303000 bias_p_value=0.49616 consensus_reject=FREQUENCY_CUTOFF consensus_score=94.0 fisher_strand_p_value=0.2381 frequency=3.578e-01 ks_quality_p_value=0.774475 major_base=A major_cov=39/31 major_frequency=6.422e-01 minor_base=G minor_cov=17/22 new_cov=17/22 polymorphism_frequency=3.578e-01 polymorphism_score=113.4 prediction=polymorphism ref_cov=39/31 total_cov=56/53 RA 415 . NC_000913 1429360 0 C T bias_e_value=2496040 bias_p_value=0.537747 consensus_reject=FREQUENCY_CUTOFF consensus_score=104.8 fisher_strand_p_value=0.236458 frequency=3.704e-01 ks_quality_p_value=0.888139 major_base=C major_cov=39/29 major_frequency=6.296e-01 minor_base=T minor_cov=18/22 new_cov=18/22 polymorphism_frequency=3.704e-01 polymorphism_score=116.1 prediction=polymorphism ref_cov=39/29 total_cov=57/51 RA 416 . NC_000913 1429364 0 T C bias_e_value=2604750 bias_p_value=0.56117 consensus_reject=FREQUENCY_CUTOFF consensus_score=89.2 fisher_strand_p_value=0.236458 frequency=3.704e-01 ks_quality_p_value=0.953096 major_base=T major_cov=39/29 major_frequency=6.296e-01 minor_base=C minor_cov=18/22 new_cov=18/22 polymorphism_frequency=3.704e-01 polymorphism_score=109.0 prediction=polymorphism ref_cov=39/29 total_cov=57/51 RA 417 . NC_000913 1429404 0 C T bias_e_value=2578770 bias_p_value=0.555572 consensus_reject=FREQUENCY_CUTOFF consensus_score=109.2 fisher_strand_p_value=0.231502 frequency=3.704e-01 ks_quality_p_value=0.957363 major_base=C major_cov=41/27 major_frequency=6.296e-01 minor_base=T minor_cov=19/21 new_cov=19/21 polymorphism_frequency=3.704e-01 polymorphism_score=115.2 prediction=polymorphism ref_cov=41/27 total_cov=61/50 RA 418 . NC_000913 1429416 0 A G bias_e_value=3493350 bias_p_value=0.752609 consensus_reject=FREQUENCY_CUTOFF consensus_score=127.7 fisher_strand_p_value=0.398184 frequency=3.238e-01 ks_quality_p_value=0.967212 major_base=A major_cov=46/25 major_frequency=6.762e-01 minor_base=G minor_cov=19/15 new_cov=19/15 polymorphism_frequency=3.238e-01 polymorphism_score=98.0 prediction=polymorphism ref_cov=46/25 total_cov=65/40 RA 419 . NC_000913 1429417 0 C T bias_e_value=3500940 bias_p_value=0.754244 consensus_reject=FREQUENCY_CUTOFF consensus_score=156.9 fisher_strand_p_value=0.386845 frequency=3.143e-01 ks_quality_p_value=1 major_base=C major_cov=47/25 major_frequency=6.857e-01 minor_base=T minor_cov=18/15 new_cov=18/15 polymorphism_frequency=3.143e-01 polymorphism_score=89.2 prediction=polymorphism ref_cov=47/25 total_cov=65/40 RA 420 . NC_000913 1429425 0 C A bias_e_value=3534140 bias_p_value=0.761397 consensus_reject=FREQUENCY_CUTOFF consensus_score=160.0 fisher_strand_p_value=0.394455 frequency=3.143e-01 ks_quality_p_value=1 major_base=C major_cov=46/26 major_frequency=6.857e-01 minor_base=A minor_cov=18/15 new_cov=18/15 polymorphism_frequency=3.143e-01 polymorphism_score=83.6 prediction=polymorphism ref_cov=46/26 total_cov=64/41 RA 421 . NC_000913 1429435 0 G A bias_e_value=3420740 bias_p_value=0.736965 consensus_reject=FREQUENCY_CUTOFF consensus_score=136.5 fisher_strand_p_value=0.382898 frequency=3.168e-01 ks_quality_p_value=0.963932 major_base=G major_cov=44/25 major_frequency=6.832e-01 minor_base=A minor_cov=17/15 new_cov=17/15 polymorphism_frequency=3.168e-01 polymorphism_score=86.9 prediction=polymorphism ref_cov=44/25 total_cov=61/40 RA 422 . NC_000913 1429442 0 A G bias_e_value=3491300 bias_p_value=0.752167 consensus_reject=FREQUENCY_CUTOFF consensus_score=150.8 fisher_strand_p_value=0.384664 frequency=2.913e-01 ks_quality_p_value=1 major_base=A major_cov=44/29 major_frequency=7.087e-01 minor_base=G minor_cov=15/15 new_cov=15/15 polymorphism_frequency=2.913e-01 polymorphism_score=79.5 prediction=polymorphism ref_cov=44/29 total_cov=59/44 RA 423 . NC_000913 1429444 0 T C bias_e_value=2682690 bias_p_value=0.577959 consensus_reject=FREQUENCY_CUTOFF consensus_score=149.1 fisher_strand_p_value=0.268262 frequency=2.843e-01 ks_quality_p_value=0.882823 major_base=T major_cov=45/28 major_frequency=7.157e-01 minor_base=C minor_cov=14/15 new_cov=14/15 polymorphism_frequency=2.843e-01 polymorphism_score=85.3 prediction=polymorphism ref_cov=45/28 total_cov=59/44 RA 424 . NC_000913 1429453 0 C T bias_e_value=2512820 bias_p_value=0.541363 consensus_reject=FREQUENCY_CUTOFF consensus_score=167.8 fisher_strand_p_value=0.262717 frequency=2.745e-01 ks_quality_p_value=0.808218 major_base=C major_cov=45/29 major_frequency=7.255e-01 minor_base=T minor_cov=13/15 new_cov=13/15 polymorphism_frequency=2.745e-01 polymorphism_score=75.8 prediction=polymorphism ref_cov=45/29 total_cov=58/44 RA 425 . NC_000913 1429454 0 A G bias_e_value=1607230 bias_p_value=0.346263 consensus_reject=FREQUENCY_CUTOFF consensus_score=152.0 fisher_strand_p_value=0.262717 frequency=2.745e-01 ks_quality_p_value=0.407497 major_base=A major_cov=45/29 major_frequency=7.255e-01 minor_base=G minor_cov=13/15 new_cov=13/15 polymorphism_frequency=2.745e-01 polymorphism_score=79.8 prediction=polymorphism ref_cov=45/29 total_cov=58/44 RA 426 . NC_000913 1429462 0 C T bias_e_value=2354340 bias_p_value=0.507219 consensus_reject=FREQUENCY_CUTOFF consensus_score=173.6 fisher_strand_p_value=0.792004 frequency=2.000e-01 ks_quality_p_value=0.241177 major_base=C major_cov=45/27 major_frequency=8.000e-01 minor_base=T minor_cov=12/6 new_cov=12/6 polymorphism_frequency=2.000e-01 polymorphism_score=42.8 prediction=polymorphism ref_cov=45/27 total_cov=58/33 RA 427 . NC_000913 1429466 0 G C bias_e_value=2711590 bias_p_value=0.584185 consensus_reject=FREQUENCY_CUTOFF consensus_score=202.8 fisher_strand_p_value=1 frequency=2.000e-01 ks_quality_p_value=0.241177 major_base=G major_cov=46/26 major_frequency=8.000e-01 minor_base=C minor_cov=12/6 new_cov=12/6 polymorphism_frequency=2.000e-01 polymorphism_score=54.1 prediction=polymorphism ref_cov=46/26 total_cov=58/33 RA 428 . NC_000913 1429492 0 T A bias_e_value=4379150 bias_p_value=0.943445 consensus_reject=FREQUENCY_CUTOFF consensus_score=233.3 fisher_strand_p_value=0.787681 frequency=2.022e-01 ks_quality_p_value=0.86725 major_base=T major_cov=43/28 major_frequency=7.978e-01 minor_base=A minor_cov=12/6 new_cov=12/6 polymorphism_frequency=2.022e-01 polymorphism_score=66.9 prediction=polymorphism ref_cov=43/28 total_cov=55/34 RA 429 . NC_000913 1429493 0 G A bias_e_value=4379150 bias_p_value=0.943445 consensus_reject=FREQUENCY_CUTOFF consensus_score=198.9 fisher_strand_p_value=0.787681 frequency=2.022e-01 ks_quality_p_value=0.86725 major_base=G major_cov=43/28 major_frequency=7.978e-01 minor_base=A minor_cov=12/6 new_cov=12/6 polymorphism_frequency=2.022e-01 polymorphism_score=44.0 prediction=polymorphism ref_cov=43/28 total_cov=55/34 RA 430 . NC_000913 1429495 0 G T bias_e_value=4641650 bias_p_value=0.999999 consensus_reject=FREQUENCY_CUTOFF consensus_score=192.4 fisher_strand_p_value=1 frequency=2.184e-01 ks_quality_p_value=0.998862 major_base=G major_cov=42/26 major_frequency=7.816e-01 minor_base=T minor_cov=12/7 new_cov=12/7 polymorphism_frequency=2.184e-01 polymorphism_score=46.2 prediction=polymorphism ref_cov=42/26 total_cov=54/33 RA 431 . NC_000913 1429510 0 A C bias_e_value=4133910 bias_p_value=0.890612 consensus_reject=FREQUENCY_CUTOFF consensus_score=154.7 fisher_strand_p_value=0.597386 frequency=2.262e-01 ks_quality_p_value=0.954766 major_base=A major_cov=39/26 major_frequency=7.738e-01 minor_base=C minor_cov=13/6 new_cov=13/6 polymorphism_frequency=2.262e-01 polymorphism_score=50.8 prediction=polymorphism ref_cov=39/26 total_cov=52/32 RA 432 . NC_000913 1429522 0 A C bias_e_value=3638480 bias_p_value=0.783877 consensus_reject=FREQUENCY_CUTOFF consensus_score=144.1 fisher_strand_p_value=0.432488 frequency=2.410e-01 ks_quality_p_value=0.969865 major_base=A major_cov=36/27 major_frequency=7.590e-01 minor_base=C minor_cov=14/6 new_cov=14/6 polymorphism_frequency=2.410e-01 polymorphism_score=54.1 prediction=polymorphism ref_cov=36/27 total_cov=50/33 RA 433 . NC_000913 1429534 0 C T bias_e_value=4219700 bias_p_value=0.909094 consensus_reject=FREQUENCY_CUTOFF consensus_score=136.2 fisher_strand_p_value=0.628587 frequency=2.805e-01 ks_quality_p_value=0.962682 major_base=C major_cov=32/27 major_frequency=7.195e-01 minor_base=T minor_cov=14/9 new_cov=14/9 polymorphism_frequency=2.805e-01 polymorphism_score=59.2 prediction=polymorphism ref_cov=32/27 total_cov=47/36 RA 434 . NC_000913 1429537 0 G A bias_e_value=4625680 bias_p_value=0.996559 consensus_reject=FREQUENCY_CUTOFF consensus_score=137.0 fisher_strand_p_value=1 frequency=2.750e-01 ks_quality_p_value=0.918196 major_base=G major_cov=33/25 major_frequency=7.250e-01 minor_base=A minor_cov=13/9 new_cov=13/9 polymorphism_frequency=2.750e-01 polymorphism_score=58.0 prediction=polymorphism ref_cov=33/25 total_cov=46/35 RA 435 . NC_000913 1429543 0 G A bias_e_value=4641650 bias_p_value=0.999999 consensus_reject=FREQUENCY_CUTOFF consensus_score=139.1 fisher_strand_p_value=1 frequency=2.750e-01 ks_quality_p_value=0.998747 major_base=G major_cov=33/25 major_frequency=7.250e-01 minor_base=A minor_cov=13/9 new_cov=13/9 polymorphism_frequency=2.750e-01 polymorphism_score=56.8 prediction=polymorphism ref_cov=33/25 total_cov=46/35 RA 436 . NC_000913 1429550 0 T G bias_e_value=4516250 bias_p_value=0.972983 consensus_reject=FREQUENCY_CUTOFF consensus_score=123.2 fisher_strand_p_value=0.806899 frequency=2.857e-01 ks_quality_p_value=0.962621 major_base=T major_cov=34/26 major_frequency=7.143e-01 minor_base=G minor_cov=15/9 new_cov=15/9 polymorphism_frequency=2.857e-01 polymorphism_score=67.6 prediction=polymorphism ref_cov=34/26 total_cov=49/35 RA 437 . NC_000913 1429551 0 C A bias_e_value=4274060 bias_p_value=0.920806 consensus_reject=FREQUENCY_CUTOFF consensus_score=150.6 fisher_strand_p_value=0.629402 frequency=2.976e-01 ks_quality_p_value=1 major_base=C major_cov=33/26 major_frequency=7.024e-01 minor_base=A minor_cov=16/9 new_cov=16/9 polymorphism_frequency=2.976e-01 polymorphism_score=56.0 prediction=polymorphism ref_cov=33/26 total_cov=49/35 RA 438 . NC_000913 1429558 0 T C bias_e_value=4138220 bias_p_value=0.89154 consensus_reject=FREQUENCY_CUTOFF consensus_score=109.1 fisher_strand_p_value=0.814127 frequency=2.941e-01 ks_quality_p_value=0.702619 major_base=T major_cov=34/26 major_frequency=7.059e-01 minor_base=C minor_cov=15/10 new_cov=15/10 polymorphism_frequency=2.941e-01 polymorphism_score=74.3 prediction=polymorphism ref_cov=34/26 total_cov=49/36 RA 439 . NC_000913 1429562 0 A G bias_e_value=4514800 bias_p_value=0.972672 consensus_reject=FREQUENCY_CUTOFF consensus_score=104.7 fisher_strand_p_value=0.809416 frequency=3.049e-01 ks_quality_p_value=0.958113 major_base=A major_cov=31/26 major_frequency=6.951e-01 minor_base=G minor_cov=15/10 new_cov=15/10 polymorphism_frequency=3.049e-01 polymorphism_score=70.0 prediction=polymorphism ref_cov=31/26 total_cov=47/36 RA 440 . NC_000913 1429569 0 G A bias_e_value=4277790 bias_p_value=0.92161 consensus_reject=FREQUENCY_CUTOFF consensus_score=115.8 fisher_strand_p_value=0.631143 frequency=3.125e-01 ks_quality_p_value=1 major_base=G major_cov=29/26 major_frequency=6.875e-01 minor_base=A minor_cov=15/10 new_cov=15/10 polymorphism_frequency=3.125e-01 polymorphism_score=66.2 prediction=polymorphism ref_cov=29/26 total_cov=44/36 RA 441 . NC_000913 1429571 0 A G bias_e_value=4227120 bias_p_value=0.910692 consensus_reject=FREQUENCY_CUTOFF consensus_score=98.1 fisher_strand_p_value=0.631143 frequency=3.125e-01 ks_quality_p_value=0.963851 major_base=A major_cov=29/26 major_frequency=6.875e-01 minor_base=G minor_cov=15/10 new_cov=15/10 polymorphism_frequency=3.125e-01 polymorphism_score=71.9 prediction=polymorphism ref_cov=29/26 total_cov=44/36 RA 442 . NC_000913 1429580 0 A G bias_e_value=3530090 bias_p_value=0.760525 consensus_reject=FREQUENCY_CUTOFF consensus_score=89.5 fisher_strand_p_value=0.477099 frequency=3.250e-01 ks_quality_p_value=0.824818 major_base=A major_cov=28/26 major_frequency=6.750e-01 minor_base=G minor_cov=16/10 new_cov=16/10 polymorphism_frequency=3.250e-01 polymorphism_score=76.0 prediction=polymorphism ref_cov=28/26 total_cov=44/36 RA 443 . NC_000913 1429597 0 A G bias_e_value=3551790 bias_p_value=0.765199 consensus_reject=FREQUENCY_CUTOFF consensus_score=85.0 fisher_strand_p_value=0.48671 frequency=3.373e-01 ks_quality_p_value=0.818897 major_base=A major_cov=28/27 major_frequency=6.627e-01 minor_base=G minor_cov=17/11 new_cov=17/11 polymorphism_frequency=3.373e-01 polymorphism_score=82.4 prediction=polymorphism ref_cov=28/27 total_cov=45/38 RA 444 . NC_000913 1429598 0 T G bias_e_value=3131230 bias_p_value=0.674593 consensus_reject=FREQUENCY_CUTOFF consensus_score=73.7 fisher_strand_p_value=0.48671 frequency=3.373e-01 ks_quality_p_value=0.639612 major_base=T major_cov=28/27 major_frequency=6.627e-01 minor_base=G minor_cov=17/11 new_cov=17/11 polymorphism_frequency=3.373e-01 polymorphism_score=88.9 prediction=polymorphism ref_cov=28/27 total_cov=45/38 RA 445 . NC_000913 1429599 0 C A bias_e_value=3862940 bias_p_value=0.832235 consensus_reject=FREQUENCY_CUTOFF consensus_score=112.5 fisher_strand_p_value=0.48671 frequency=3.373e-01 ks_quality_p_value=0.986016 major_base=C major_cov=28/27 major_frequency=6.627e-01 minor_base=A minor_cov=17/11 new_cov=17/11 polymorphism_frequency=3.373e-01 polymorphism_score=71.8 prediction=polymorphism ref_cov=28/27 total_cov=45/38 RA 446 . NC_000913 1429609 0 T C bias_e_value=4564450 bias_p_value=0.983368 consensus_reject=FREQUENCY_CUTOFF consensus_score=77.2 fisher_strand_p_value=0.823248 frequency=3.605e-01 ks_quality_p_value=1 major_base=T major_cov=28/27 major_frequency=6.395e-01 minor_base=C minor_cov=17/14 new_cov=17/14 polymorphism_frequency=3.605e-01 polymorphism_score=90.5 prediction=polymorphism ref_cov=28/27 total_cov=45/41 RA 447 . NC_000913 1429612 0 C A bias_e_value=3149270 bias_p_value=0.67848 consensus_reject=FREQUENCY_CUTOFF consensus_score=84.6 fisher_strand_p_value=0.65746 frequency=3.721e-01 ks_quality_p_value=0.478586 major_base=C major_cov=27/27 major_frequency=6.279e-01 minor_base=A minor_cov=18/14 new_cov=18/14 polymorphism_frequency=3.721e-01 polymorphism_score=84.3 prediction=polymorphism ref_cov=27/27 total_cov=45/41 RA 448 . NC_000913 1429615 0 T C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=89.3 fisher_strand_p_value=1 frequency=3.523e-01 ks_quality_p_value=1 major_base=T major_cov=31/26 major_frequency=6.477e-01 minor_base=C minor_cov=17/14 new_cov=17/14 polymorphism_frequency=3.523e-01 polymorphism_score=86.5 prediction=polymorphism ref_cov=31/26 total_cov=48/41 RA 449 . NC_000913 1429632 0 G A bias_e_value=3682160 bias_p_value=0.793287 consensus_reject=FREQUENCY_CUTOFF consensus_score=88.5 fisher_strand_p_value=0.512118 frequency=3.626e-01 ks_quality_p_value=0.84053 major_base=G major_cov=30/28 major_frequency=6.374e-01 minor_base=A minor_cov=20/13 new_cov=20/13 polymorphism_frequency=3.626e-01 polymorphism_score=91.2 prediction=polymorphism ref_cov=30/28 total_cov=50/41 RA 450 . NC_000913 1429682 0 T G bias_e_value=3683790 bias_p_value=0.793638 consensus_reject=FREQUENCY_CUTOFF consensus_score=91.5 fisher_strand_p_value=1 frequency=3.298e-01 ks_quality_p_value=0.430867 major_base=T major_cov=31/32 major_frequency=6.702e-01 minor_base=G minor_cov=15/16 new_cov=15/16 polymorphism_frequency=3.298e-01 polymorphism_score=97.1 prediction=polymorphism ref_cov=31/32 total_cov=46/48 RA 451 . NC_000913 1429692 0 T A bias_e_value=4454690 bias_p_value=0.95972 consensus_reject=FREQUENCY_CUTOFF consensus_score=174.8 fisher_strand_p_value=1 frequency=3.085e-01 ks_quality_p_value=0.729941 major_base=T major_cov=32/33 major_frequency=6.915e-01 minor_base=A minor_cov=14/15 new_cov=14/15 polymorphism_frequency=3.085e-01 polymorphism_score=113.9 prediction=polymorphism ref_cov=32/33 total_cov=49/48 RA 452 . NC_000913 1429702 0 A C bias_e_value=4629130 bias_p_value=0.997303 consensus_reject=FREQUENCY_CUTOFF consensus_score=126.0 fisher_strand_p_value=1 frequency=2.887e-01 ks_quality_p_value=0.927463 major_base=A major_cov=33/36 major_frequency=7.113e-01 minor_base=C minor_cov=14/14 new_cov=14/14 polymorphism_frequency=2.887e-01 polymorphism_score=85.3 prediction=polymorphism ref_cov=33/36 total_cov=47/50 RA 453 . NC_000913 1429708 0 A G bias_e_value=4638210 bias_p_value=0.999259 consensus_reject=FREQUENCY_CUTOFF consensus_score=155.9 fisher_strand_p_value=1 frequency=2.700e-01 ks_quality_p_value=0.961745 major_base=A major_cov=34/39 major_frequency=7.300e-01 minor_base=G minor_cov=13/14 new_cov=13/14 polymorphism_frequency=2.700e-01 polymorphism_score=74.7 prediction=polymorphism ref_cov=34/39 total_cov=47/53 RA 454 . NC_000913 1429714 0 A C bias_e_value=3853850 bias_p_value=0.830275 consensus_reject=FREQUENCY_CUTOFF consensus_score=138.9 fisher_strand_p_value=1 frequency=2.700e-01 ks_quality_p_value=0.477245 major_base=A major_cov=35/38 major_frequency=7.300e-01 minor_base=C minor_cov=13/14 new_cov=13/14 polymorphism_frequency=2.700e-01 polymorphism_score=87.7 prediction=polymorphism ref_cov=35/38 total_cov=48/52 RA 455 . NC_000913 1429724 0 A G bias_e_value=4629750 bias_p_value=0.997435 consensus_reject=FREQUENCY_CUTOFF consensus_score=137.1 fisher_strand_p_value=1 frequency=2.842e-01 ks_quality_p_value=0.929242 major_base=A major_cov=34/34 major_frequency=7.158e-01 minor_base=G minor_cov=13/14 new_cov=13/14 polymorphism_frequency=2.842e-01 polymorphism_score=74.4 prediction=polymorphism ref_cov=34/34 total_cov=48/48 RA 456 . NC_000913 1429732 0 G A bias_e_value=4319750 bias_p_value=0.93065 consensus_reject=FREQUENCY_CUTOFF consensus_score=149.5 fisher_strand_p_value=0.821513 frequency=2.812e-01 ks_quality_p_value=0.793038 major_base=G major_cov=36/33 major_frequency=7.188e-01 minor_base=A minor_cov=13/14 new_cov=13/14 polymorphism_frequency=2.812e-01 polymorphism_score=67.8 prediction=polymorphism ref_cov=36/33 total_cov=49/47 RA 457 . NC_000913 1429735 0 A G bias_e_value=4556660 bias_p_value=0.98169 consensus_reject=FREQUENCY_CUTOFF consensus_score=144.3 fisher_strand_p_value=0.821513 frequency=2.812e-01 ks_quality_p_value=0.991881 major_base=A major_cov=36/33 major_frequency=7.188e-01 minor_base=G minor_cov=13/14 new_cov=13/14 polymorphism_frequency=2.812e-01 polymorphism_score=74.1 prediction=polymorphism ref_cov=36/33 total_cov=49/47 RA 458 . NC_000913 1429741 0 A G bias_e_value=4274260 bias_p_value=0.920848 consensus_reject=FREQUENCY_CUTOFF consensus_score=139.5 fisher_strand_p_value=0.650358 frequency=2.812e-01 ks_quality_p_value=0.967917 major_base=A major_cov=38/31 major_frequency=7.188e-01 minor_base=G minor_cov=13/14 new_cov=13/14 polymorphism_frequency=2.812e-01 polymorphism_score=75.7 prediction=polymorphism ref_cov=38/31 total_cov=51/45 RA 459 . NC_000913 1429744 0 T C bias_e_value=3922910 bias_p_value=0.845153 consensus_reject=FREQUENCY_CUTOFF consensus_score=135.9 fisher_strand_p_value=0.497963 frequency=2.872e-01 ks_quality_p_value=0.999988 major_base=T major_cov=38/29 major_frequency=7.128e-01 minor_base=C minor_cov=13/14 new_cov=13/14 polymorphism_frequency=2.872e-01 polymorphism_score=77.3 prediction=polymorphism ref_cov=38/29 total_cov=51/43 RA 460 . NC_000913 1429747 0 G C bias_e_value=3922930 bias_p_value=0.845158 consensus_reject=FREQUENCY_CUTOFF consensus_score=162.8 fisher_strand_p_value=0.497963 frequency=2.872e-01 ks_quality_p_value=1 major_base=G major_cov=38/29 major_frequency=7.128e-01 minor_base=C minor_cov=13/14 new_cov=13/14 polymorphism_frequency=2.872e-01 polymorphism_score=92.0 prediction=polymorphism ref_cov=38/29 total_cov=51/43 RA 461 . NC_000913 1429750 0 C T bias_e_value=4313460 bias_p_value=0.929293 consensus_reject=FREQUENCY_CUTOFF consensus_score=145.1 fisher_strand_p_value=0.648343 frequency=2.967e-01 ks_quality_p_value=1 major_base=C major_cov=35/29 major_frequency=7.033e-01 minor_base=T minor_cov=13/14 new_cov=13/14 polymorphism_frequency=2.967e-01 polymorphism_score=70.1 prediction=polymorphism ref_cov=35/29 total_cov=48/43 RA 462 . NC_000913 1429753 0 G A bias_e_value=3383330 bias_p_value=0.728905 consensus_reject=FREQUENCY_CUTOFF consensus_score=124.2 fisher_strand_p_value=0.496454 frequency=3.034e-01 ks_quality_p_value=0.727337 major_base=G major_cov=35/27 major_frequency=6.966e-01 minor_base=A minor_cov=13/14 new_cov=13/14 polymorphism_frequency=3.034e-01 polymorphism_score=72.5 prediction=polymorphism ref_cov=35/27 total_cov=48/42 RA 463 . NC_000913 1429756 0 C A bias_e_value=4450350 bias_p_value=0.958786 consensus_reject=FREQUENCY_CUTOFF consensus_score=136.1 fisher_strand_p_value=0.820758 frequency=3.043e-01 ks_quality_p_value=0.885757 major_base=C major_cov=35/29 major_frequency=6.957e-01 minor_base=A minor_cov=14/14 new_cov=14/14 polymorphism_frequency=3.043e-01 polymorphism_score=62.2 prediction=polymorphism ref_cov=35/29 total_cov=49/43 RA 464 . NC_000913 1429759 0 G A bias_e_value=4316840 bias_p_value=0.930023 consensus_reject=FREQUENCY_CUTOFF consensus_score=149.7 fisher_strand_p_value=0.650103 frequency=2.903e-01 ks_quality_p_value=0.999891 major_base=G major_cov=36/30 major_frequency=7.097e-01 minor_base=A minor_cov=13/14 new_cov=13/14 polymorphism_frequency=2.903e-01 polymorphism_score=69.3 prediction=polymorphism ref_cov=36/30 total_cov=49/44 RA 465 . NC_000913 1429767 0 C T bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=146.9 fisher_strand_p_value=1 frequency=3.053e-01 ks_quality_p_value=1 major_base=C major_cov=34/32 major_frequency=6.947e-01 minor_base=T minor_cov=15/14 new_cov=15/14 polymorphism_frequency=3.053e-01 polymorphism_score=72.1 prediction=polymorphism ref_cov=34/32 total_cov=49/46 RA 466 . NC_000913 1429780 0 A G bias_e_value=3821840 bias_p_value=0.823379 consensus_reject=FREQUENCY_CUTOFF consensus_score=146.4 fisher_strand_p_value=0.500035 frequency=2.708e-01 ks_quality_p_value=0.936021 major_base=A major_cov=38/32 major_frequency=7.292e-01 minor_base=G minor_cov=12/14 new_cov=12/14 polymorphism_frequency=2.708e-01 polymorphism_score=67.1 prediction=polymorphism ref_cov=38/32 total_cov=50/46 RA 467 . NC_000913 1429783 0 G A bias_e_value=3910710 bias_p_value=0.842525 consensus_reject=FREQUENCY_CUTOFF consensus_score=163.2 fisher_strand_p_value=0.500035 frequency=2.708e-01 ks_quality_p_value=0.988347 major_base=G major_cov=38/32 major_frequency=7.292e-01 minor_base=A minor_cov=12/14 new_cov=12/14 polymorphism_frequency=2.708e-01 polymorphism_score=62.9 prediction=polymorphism ref_cov=38/32 total_cov=50/46 RA 468 . NC_000913 1429816 0 C T bias_e_value=4634560 bias_p_value=0.998472 consensus_reject=FREQUENCY_CUTOFF consensus_score=194.2 fisher_strand_p_value=1 frequency=2.347e-01 ks_quality_p_value=0.94523 major_base=C major_cov=37/38 major_frequency=7.653e-01 minor_base=T minor_cov=11/12 new_cov=11/12 polymorphism_frequency=2.347e-01 polymorphism_score=57.8 prediction=polymorphism ref_cov=37/38 total_cov=48/50 RA 469 . NC_000913 1429820 0 A G bias_e_value=4549200 bias_p_value=0.980082 consensus_reject=FREQUENCY_CUTOFF consensus_score=191.0 fisher_strand_p_value=0.807167 frequency=2.188e-01 ks_quality_p_value=1 major_base=A major_cov=36/39 major_frequency=7.812e-01 minor_base=G minor_cov=11/10 new_cov=11/10 polymorphism_frequency=2.188e-01 polymorphism_score=52.9 prediction=polymorphism ref_cov=36/39 total_cov=47/49 RA 470 . NC_000913 1429823 0 A C bias_e_value=4503160 bias_p_value=0.970164 consensus_reject=FREQUENCY_CUTOFF consensus_score=177.4 fisher_strand_p_value=0.807167 frequency=2.188e-01 ks_quality_p_value=0.948854 major_base=A major_cov=36/39 major_frequency=7.812e-01 minor_base=C minor_cov=11/10 new_cov=11/10 polymorphism_frequency=2.188e-01 polymorphism_score=60.3 prediction=polymorphism ref_cov=36/39 total_cov=47/49 RA 471 . NC_000913 1466432 0 A G bias_e_value=4485680 bias_p_value=0.966397 consensus_reject=FREQUENCY_CUTOFF consensus_score=114.1 fisher_strand_p_value=0.75222 frequency=2.034e-01 ks_quality_p_value=1 major_base=A major_cov=24/23 major_frequency=7.966e-01 minor_base=G minor_cov=7/5 new_cov=7/5 polymorphism_frequency=2.034e-01 polymorphism_score=17.2 prediction=polymorphism ref_cov=24/23 total_cov=31/28 RA 472 . NC_000913 1470627 0 C A bias_e_value=2.05922e-06 bias_p_value=4.43641e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=339.4 fisher_strand_p_value=1.34688e-14 frequency=2.303e-01 ks_quality_p_value=1 major_base=C major_cov=37/80 major_frequency=7.697e-01 minor_base=A minor_cov=35/0 new_cov=35/0 polymorphism_frequency=2.303e-01 polymorphism_score=14.4 prediction=polymorphism ref_cov=37/80 total_cov=72/80 RA 473 . NC_000913 1494388 0 C . consensus_score=447.4 frequency=1 major_base=. major_cov=45/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/44 RA 474 . NC_000913 1517508 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=437.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=51/70 major_frequency=9.918e-01 minor_base=G minor_cov=0/1 new_cov=51/70 polymorphism_frequency=9.918e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=51/71 RA 475 . NC_000913 1531250 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=512.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=61/80 major_frequency=9.930e-01 minor_base=G minor_cov=0/1 new_cov=61/80 polymorphism_frequency=9.930e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/81 RA 476 . NC_000913 1556938 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=356.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=49/49 major_frequency=9.899e-01 minor_base=C minor_cov=1/0 new_cov=49/49 polymorphism_frequency=9.899e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=50/49 RA 477 . NC_000913 1579973 0 C A bias_e_value=0.0271004 bias_p_value=5.83853e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=307.7 fisher_strand_p_value=2.52766e-10 frequency=2.313e-01 ks_quality_p_value=1 major_base=C major_cov=51/62 major_frequency=7.687e-01 minor_base=A minor_cov=34/0 new_cov=34/0 polymorphism_frequency=2.313e-01 polymorphism_score=14.7 prediction=polymorphism ref_cov=51/62 total_cov=85/62 RA 478 . NC_000913 1634370 0 T C bias_e_value=4383950 bias_p_value=0.94448 consensus_reject=FREQUENCY_CUTOFF consensus_score=32.0 fisher_strand_p_value=0.709399 frequency=3.714e-01 ks_quality_p_value=0.966797 major_base=T major_cov=15/7 major_frequency=6.286e-01 minor_base=C minor_cov=10/3 new_cov=10/3 polymorphism_frequency=3.714e-01 polymorphism_score=36.8 prediction=polymorphism ref_cov=15/7 total_cov=25/10 RA 479 . NC_000913 1634382 0 T C bias_e_value=4634060 bias_p_value=0.998363 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=4.1 fisher_strand_p_value=1 frequency=5.333e-01 ks_quality_p_value=0.943335 major_base=C major_cov=12/4 major_frequency=5.333e-01 minor_base=T minor_cov=11/3 new_cov=12/4 polymorphism_frequency=5.333e-01 polymorphism_score=39.1 prediction=polymorphism ref_cov=11/3 total_cov=23/7 RA 480 . NC_000913 1634388 0 T G bias_e_value=3226180 bias_p_value=0.695049 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=8.6 fisher_strand_p_value=0.488922 frequency=5.263e-01 ks_quality_p_value=0.673463 major_base=G major_cov=15/5 major_frequency=5.263e-01 minor_base=T minor_cov=11/7 new_cov=15/5 polymorphism_frequency=5.263e-01 polymorphism_score=54.3 prediction=polymorphism ref_cov=11/7 total_cov=26/12 RA 481 . NC_000913 1634404 0 A G bias_e_value=4641650 bias_p_value=1 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=5.4 fisher_strand_p_value=1 frequency=5.476e-01 ks_quality_p_value=1 major_base=G major_cov=15/8 major_frequency=5.476e-01 minor_base=A minor_cov=12/7 new_cov=15/8 polymorphism_frequency=5.476e-01 polymorphism_score=51.6 prediction=polymorphism ref_cov=12/7 total_cov=27/15 RA 482 . NC_000913 1634482 0 T C bias_e_value=3092330 bias_p_value=0.666213 consensus_reject=FREQUENCY_CUTOFF consensus_score=14.8 fisher_strand_p_value=0.304195 frequency=5.490e-01 ks_quality_p_value=1 major_base=C major_cov=38/18 major_frequency=5.490e-01 minor_base=T minor_cov=26/20 new_cov=38/18 polymorphism_frequency=5.490e-01 polymorphism_score=133.9 prediction=polymorphism ref_cov=26/20 total_cov=64/38 RA 483 . NC_000913 1634484 0 G T bias_e_value=3552160 bias_p_value=0.76528 consensus_reject=FREQUENCY_CUTOFF consensus_score=17.3 fisher_strand_p_value=0.412151 frequency=5.588e-01 ks_quality_p_value=0.967249 major_base=T major_cov=38/19 major_frequency=5.588e-01 minor_base=G minor_cov=26/19 new_cov=38/19 polymorphism_frequency=5.588e-01 polymorphism_score=150.7 prediction=polymorphism ref_cov=26/19 total_cov=64/38 RA 484 . NC_000913 1634569 0 A T bias_e_value=3204410 bias_p_value=0.690359 consensus_reject=FREQUENCY_CUTOFF consensus_score=38.7 fisher_strand_p_value=0.325073 frequency=5.494e-01 ks_quality_p_value=1 major_base=T major_cov=60/29 major_frequency=5.494e-01 minor_base=A minor_cov=43/30 new_cov=60/29 polymorphism_frequency=5.494e-01 polymorphism_score=313.8 prediction=polymorphism ref_cov=43/30 total_cov=104/59 RA 485 . NC_000913 1634571 0 C T bias_e_value=3092220 bias_p_value=0.666189 consensus_reject=FREQUENCY_CUTOFF consensus_score=33.5 fisher_strand_p_value=0.325073 frequency=5.494e-01 ks_quality_p_value=0.935711 major_base=T major_cov=60/29 major_frequency=5.494e-01 minor_base=C minor_cov=43/30 new_cov=60/29 polymorphism_frequency=5.494e-01 polymorphism_score=236.6 prediction=polymorphism ref_cov=43/30 total_cov=103/59 RA 486 . NC_000913 1634578 0 T C bias_e_value=96792.9 bias_p_value=0.0208531 consensus_reject=FREQUENCY_CUTOFF consensus_score=32.2 fisher_strand_p_value=0.196668 frequency=5.515e-01 ks_quality_p_value=0.0156275 major_base=C major_cov=62/29 major_frequency=5.515e-01 minor_base=T minor_cov=43/31 new_cov=62/29 polymorphism_frequency=5.515e-01 polymorphism_score=226.3 prediction=polymorphism ref_cov=43/31 total_cov=106/60 RA 487 . NC_000913 1634597 0 C A bias_e_value=2904820 bias_p_value=0.625816 consensus_reject=FREQUENCY_CUTOFF consensus_score=26.3 fisher_strand_p_value=0.272187 frequency=5.632e-01 ks_quality_p_value=0.998421 major_base=A major_cov=65/33 major_frequency=5.632e-01 minor_base=C minor_cov=44/32 new_cov=65/33 polymorphism_frequency=5.632e-01 polymorphism_score=255.3 prediction=polymorphism ref_cov=44/32 total_cov=109/65 RA 488 . NC_000913 1634658 0 A G bias_e_value=3379570 bias_p_value=0.728097 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=7.1 fisher_strand_p_value=0.364994 frequency=5.778e-01 ks_quality_p_value=0.987128 major_base=G major_cov=62/42 major_frequency=5.778e-01 minor_base=A minor_cov=40/36 new_cov=62/42 polymorphism_frequency=5.778e-01 polymorphism_score=222.3 prediction=polymorphism ref_cov=40/36 total_cov=102/78 RA 489 . NC_000913 1634661 0 C G bias_e_value=2951620 bias_p_value=0.635899 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=2.4 fisher_strand_p_value=0.279582 frequency=5.886e-01 ks_quality_p_value=1 major_base=G major_cov=62/41 major_frequency=5.886e-01 minor_base=C minor_cov=37/35 new_cov=62/41 polymorphism_frequency=5.886e-01 polymorphism_score=258.1 prediction=polymorphism ref_cov=37/35 total_cov=99/76 RA 490 . NC_000913 1634676 0 A G bias_e_value=2903590 bias_p_value=0.62555 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=0.6 fisher_strand_p_value=0.271924 frequency=5.833e-01 ks_quality_p_value=0.99864 major_base=G major_cov=58/40 major_frequency=5.833e-01 minor_base=A minor_cov=35/35 new_cov=58/40 polymorphism_frequency=5.833e-01 polymorphism_score=206.0 prediction=polymorphism ref_cov=35/35 total_cov=93/75 RA 491 . NC_000913 1634699 0 A C bias_e_value=2024730 bias_p_value=0.436209 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=1.1 fisher_strand_p_value=0.256039 frequency=5.833e-01 ks_quality_p_value=0.589231 major_base=C major_cov=56/35 major_frequency=5.833e-01 minor_base=A minor_cov=34/31 new_cov=56/35 polymorphism_frequency=5.833e-01 polymorphism_score=196.5 prediction=polymorphism ref_cov=34/31 total_cov=90/66 RA 492 . NC_000913 1634724 0 G A bias_e_value=4593710 bias_p_value=0.989672 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-5.4 fisher_strand_p_value=0.862111 frequency=5.944e-01 ks_quality_p_value=0.997277 major_base=A major_cov=52/33 major_frequency=5.944e-01 minor_base=G minor_cov=34/24 new_cov=52/33 polymorphism_frequency=5.944e-01 polymorphism_score=174.6 prediction=polymorphism ref_cov=34/24 total_cov=86/57 RA 493 . NC_000913 1634769 0 T A bias_e_value=3783970 bias_p_value=0.81522 consensus_reject=FREQUENCY_CUTOFF consensus_score=45.2 fisher_strand_p_value=0.457455 frequency=5.172e-01 ks_quality_p_value=1 major_base=A major_cov=33/27 major_frequency=5.172e-01 minor_base=T minor_cov=26/30 new_cov=33/27 polymorphism_frequency=5.172e-01 polymorphism_score=243.6 prediction=polymorphism ref_cov=26/30 total_cov=59/57 RA 494 . NC_000913 1634778 0 T G bias_e_value=3749070 bias_p_value=0.807702 consensus_reject=FREQUENCY_CUTOFF consensus_score=62.3 fisher_strand_p_value=0.467039 frequency=4.793e-01 ks_quality_p_value=0.959168 major_base=T major_cov=31/32 major_frequency=5.207e-01 minor_base=G minor_cov=33/25 new_cov=33/25 polymorphism_frequency=4.793e-01 polymorphism_score=195.7 prediction=polymorphism ref_cov=31/32 total_cov=64/57 RA 495 . NC_000913 1634799 0 A G bias_e_value=4228700 bias_p_value=0.911033 consensus_reject=FREQUENCY_CUTOFF consensus_score=97.8 fisher_strand_p_value=0.705273 frequency=4.322e-01 ks_quality_p_value=0.863515 major_base=A major_cov=39/28 major_frequency=5.678e-01 minor_base=G minor_cov=32/19 new_cov=32/19 polymorphism_frequency=4.322e-01 polymorphism_score=160.9 prediction=polymorphism ref_cov=39/28 total_cov=71/47 RA 496 . NC_000913 1636128 0 C T bias_e_value=3971060 bias_p_value=0.855527 consensus_reject=FREQUENCY_CUTOFF consensus_score=220.1 fisher_strand_p_value=0.61881 frequency=2.020e-01 ks_quality_p_value=0.829277 major_base=C major_cov=37/42 major_frequency=7.980e-01 minor_base=T minor_cov=11/9 new_cov=11/9 polymorphism_frequency=2.020e-01 polymorphism_score=48.3 prediction=polymorphism ref_cov=37/42 total_cov=48/51 RA 497 . NC_000913 1636382 0 C A bias_e_value=3952410 bias_p_value=0.851508 consensus_reject=FREQUENCY_CUTOFF consensus_score=165.2 fisher_strand_p_value=0.716704 frequency=3.623e-01 ks_quality_p_value=0.707675 major_base=C major_cov=56/32 major_frequency=6.377e-01 minor_base=A minor_cov=30/20 new_cov=30/20 polymorphism_frequency=3.623e-01 polymorphism_score=145.7 prediction=polymorphism ref_cov=56/32 total_cov=86/52 RA 498 . NC_000913 1636413 0 C A bias_e_value=3542860 bias_p_value=0.763276 consensus_reject=FREQUENCY_CUTOFF consensus_score=113.5 fisher_strand_p_value=0.60766 frequency=4.133e-01 ks_quality_p_value=0.652471 major_base=C major_cov=57/31 major_frequency=5.867e-01 minor_base=A minor_cov=37/25 new_cov=37/25 polymorphism_frequency=4.133e-01 polymorphism_score=185.1 prediction=polymorphism ref_cov=57/31 total_cov=94/56 RA 499 . NC_000913 1636423 0 T C bias_e_value=3043590 bias_p_value=0.655713 consensus_reject=FREQUENCY_CUTOFF consensus_score=78.1 fisher_strand_p_value=0.491806 frequency=4.315e-01 ks_quality_p_value=0.600802 major_base=T major_cov=54/29 major_frequency=5.685e-01 minor_base=C minor_cov=37/26 new_cov=37/26 polymorphism_frequency=4.315e-01 polymorphism_score=202.7 prediction=polymorphism ref_cov=54/29 total_cov=91/55 RA 500 . NC_000913 1636455 0 G A bias_e_value=471474 bias_p_value=0.101575 consensus_reject=FREQUENCY_CUTOFF consensus_score=24.1 fisher_strand_p_value=0.265469 frequency=4.843e-01 ks_quality_p_value=0.0785663 major_base=G major_cov=51/31 major_frequency=5.157e-01 minor_base=A minor_cov=41/36 new_cov=41/36 polymorphism_frequency=4.843e-01 polymorphism_score=235.1 prediction=polymorphism ref_cov=51/31 total_cov=92/69 RA 501 . NC_000913 1636484 0 C T bias_e_value=3771780 bias_p_value=0.812593 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.2 fisher_strand_p_value=0.454112 frequency=4.746e-01 ks_quality_p_value=1 major_base=C major_cov=53/40 major_frequency=5.254e-01 minor_base=T minor_cov=43/41 new_cov=43/41 polymorphism_frequency=4.746e-01 polymorphism_score=249.8 prediction=polymorphism ref_cov=53/40 total_cov=96/81 RA 502 . NC_000913 1636503 0 T C bias_e_value=2008500 bias_p_value=0.432713 consensus_reject=FREQUENCY_CUTOFF consensus_score=11.0 fisher_strand_p_value=0.150496 frequency=4.974e-01 ks_quality_p_value=0.990215 major_base=T major_cov=56/41 major_frequency=5.026e-01 minor_base=C minor_cov=45/51 new_cov=45/51 polymorphism_frequency=4.974e-01 polymorphism_score=301.5 prediction=polymorphism ref_cov=56/41 total_cov=101/93 RA 503 . NC_000913 1652331 0 T C consensus_score=490.3 frequency=1 major_base=C major_cov=61/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/67 RA 504 . NC_000913 1667887 0 C . consensus_score=416.5 frequency=1 major_base=. major_cov=44/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/39 RA 505 . NC_000913 1744751 0 C . consensus_score=542.1 frequency=1 major_base=. major_cov=55/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/50 RA 506 . NC_000913 1820763 0 G T bias_e_value=3.57848 bias_p_value=7.70949e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=194.3 fisher_strand_p_value=4.29163e-08 frequency=2.736e-01 ks_quality_p_value=1 major_base=G major_cov=41/36 major_frequency=7.264e-01 minor_base=T minor_cov=0/29 new_cov=0/29 polymorphism_frequency=2.736e-01 polymorphism_score=11.9 prediction=polymorphism ref_cov=41/36 total_cov=41/65 RA 507 . NC_000913 1902613 0 C A bias_e_value=2.22374 bias_p_value=4.79083e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=221.7 fisher_strand_p_value=2.59421e-08 frequency=2.083e-01 ks_quality_p_value=1 major_base=C major_cov=26/50 major_frequency=7.917e-01 minor_base=A minor_cov=20/0 new_cov=20/0 polymorphism_frequency=2.083e-01 polymorphism_score=12.0 prediction=polymorphism ref_cov=26/50 total_cov=46/50 RA 508 . NC_000913 1922815 0 C A bias_e_value=30454.5 bias_p_value=0.00656113 consensus_reject=FREQUENCY_CUTOFF consensus_score=156.1 fisher_strand_p_value=0.000807917 frequency=3.021e-01 ks_quality_p_value=1 major_base=C major_cov=28/39 major_frequency=6.979e-01 minor_base=A minor_cov=23/6 new_cov=23/6 polymorphism_frequency=3.021e-01 polymorphism_score=15.8 prediction=polymorphism ref_cov=28/39 total_cov=51/45 RA 509 . NC_000913 1978243 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=523.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=69/76 major_frequency=9.932e-01 minor_base=C minor_cov=0/1 new_cov=69/76 polymorphism_frequency=9.932e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/77 RA 510 . NC_000913 2003264 0 C T consensus_score=456.5 frequency=1 major_base=T major_cov=36/88 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/88 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/88 RA 511 . NC_000913 2032423 0 G A bias_e_value=3861880 bias_p_value=0.832005 consensus_score=355.9 fisher_strand_p_value=0.479592 frequency=1 ks_quality_p_value=1 major_base=A major_cov=46/51 major_frequency=9.898e-01 minor_base=C minor_cov=1/0 new_cov=46/51 polymorphism_frequency=9.898e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/51 RA 512 . NC_000913 2173363 0 C . bias_e_value=4639370 bias_p_value=0.999508 consensus_score=356.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.968807 major_base=. major_cov=39/32 major_frequency=9.861e-01 minor_base=C minor_cov=1/0 new_cov=39/32 polymorphism_frequency=9.861e-01 polymorphism_score=-1.2 prediction=consensus ref_cov=1/0 total_cov=40/32 RA 513 . NC_000913 2173364 0 C . bias_e_value=4639370 bias_p_value=0.999508 consensus_score=356.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.968807 major_base=. major_cov=39/32 major_frequency=9.861e-01 minor_base=C minor_cov=1/0 new_cov=39/32 polymorphism_frequency=9.861e-01 polymorphism_score=-1.2 prediction=consensus ref_cov=1/0 total_cov=40/32 RA 514 . NC_000913 2179326 0 G A consensus_score=334.5 frequency=1 major_base=A major_cov=63/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=63/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=63/30 RA 515 . NC_000913 2239994 0 G T bias_e_value=7.23408e-05 bias_p_value=1.55851e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=234.7 fisher_strand_p_value=5.32626e-13 frequency=2.718e-01 ks_quality_p_value=1 major_base=G major_cov=56/19 major_frequency=7.282e-01 minor_base=T minor_cov=0/28 new_cov=0/28 polymorphism_frequency=2.718e-01 polymorphism_score=13.7 prediction=polymorphism ref_cov=56/19 total_cov=56/47 RA 516 . NC_000913 2242121 0 A G consensus_score=361.9 frequency=1 major_base=G major_cov=33/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/60 RA 517 . NC_000913 2244442 0 C A bias_e_value=21.1652 bias_p_value=4.55984e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=163.0 fisher_strand_p_value=2.83651e-07 frequency=2.697e-01 ks_quality_p_value=1 major_base=C major_cov=29/36 major_frequency=7.303e-01 minor_base=A minor_cov=24/0 new_cov=24/0 polymorphism_frequency=2.697e-01 polymorphism_score=19.0 prediction=polymorphism ref_cov=29/36 total_cov=53/36 RA 518 . NC_000913 2278650 0 G A bias_e_value=4641620 bias_p_value=0.999993 consensus_score=419.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996193 major_base=A major_cov=48/66 major_frequency=9.913e-01 minor_base=C minor_cov=0/1 new_cov=48/66 polymorphism_frequency=9.913e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/0 total_cov=48/67 RA 519 . NC_000913 2288418 0 G T bias_e_value=0.000276198 bias_p_value=5.95042e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=292.0 fisher_strand_p_value=2.13486e-12 frequency=2.803e-01 ks_quality_p_value=1 major_base=G major_cov=62/51 major_frequency=7.197e-01 minor_base=T minor_cov=0/44 new_cov=0/44 polymorphism_frequency=2.803e-01 polymorphism_score=12.4 prediction=polymorphism ref_cov=62/51 total_cov=62/95 RA 520 . NC_000913 2313736 0 C T consensus_score=355.2 frequency=1 major_base=T major_cov=52/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/46 RA 521 . NC_000913 2316221 0 C T consensus_score=369.7 frequency=1 major_base=T major_cov=55/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/46 RA 522 . NC_000913 2316753 0 C T consensus_score=379.8 frequency=1 major_base=T major_cov=51/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/59 RA 523 . NC_000913 2317233 0 C T consensus_score=327.2 frequency=1 major_base=T major_cov=50/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/44 RA 524 . NC_000913 2317463 0 C T consensus_score=333.1 frequency=1 major_base=T major_cov=40/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/56 RA 525 . NC_000913 2320552 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=433.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=61/60 major_frequency=9.918e-01 minor_base=G minor_cov=0/1 new_cov=61/60 polymorphism_frequency=9.918e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/61 RA 526 . NC_000913 2321526 0 C T consensus_score=472.3 frequency=1 major_base=T major_cov=61/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/67 RA 527 . NC_000913 2324745 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=321.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=47/44 major_frequency=9.891e-01 minor_base=G minor_cov=1/0 new_cov=47/44 polymorphism_frequency=9.891e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/44 RA 528 . NC_000913 2327447 0 C T consensus_score=338.1 frequency=1 major_base=T major_cov=41/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/55 RA 529 . NC_000913 2397444 0 G A consensus_score=276.6 frequency=1 major_base=A major_cov=34/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/41 RA 530 . NC_000913 2444758 0 A C bias_e_value=0.000901854 bias_p_value=1.94296e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=269.5 fisher_strand_p_value=7.29224e-12 frequency=2.281e-01 ks_quality_p_value=1 major_base=A major_cov=25/63 major_frequency=7.719e-01 minor_base=C minor_cov=26/0 new_cov=26/0 polymorphism_frequency=2.281e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=25/63 total_cov=51/63 RA 531 . NC_000913 2457177 0 T G bias_e_value=396.424 bias_p_value=8.54058e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=145.4 fisher_strand_p_value=6.60655e-06 frequency=2.877e-01 ks_quality_p_value=1 major_base=T major_cov=28/24 major_frequency=7.123e-01 minor_base=G minor_cov=0/21 new_cov=0/21 polymorphism_frequency=2.877e-01 polymorphism_score=11.3 prediction=polymorphism ref_cov=28/24 total_cov=28/49 RA 532 . NC_000913 2466633 0 C A bias_e_value=0.0690963 bias_p_value=1.48861e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=250.9 fisher_strand_p_value=6.72994e-10 frequency=2.540e-01 ks_quality_p_value=1 major_base=C major_cov=41/53 major_frequency=7.460e-01 minor_base=A minor_cov=32/0 new_cov=32/0 polymorphism_frequency=2.540e-01 polymorphism_score=18.8 prediction=polymorphism ref_cov=41/53 total_cov=73/54 RA 533 . NC_000913 2477265 0 A C bias_e_value=0.000103631 bias_p_value=2.23263e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=133.0 fisher_strand_p_value=7.72839e-13 frequency=3.333e-01 ks_quality_p_value=1 major_base=A major_cov=14/44 major_frequency=6.667e-01 minor_base=C minor_cov=29/0 new_cov=29/0 polymorphism_frequency=3.333e-01 polymorphism_score=31.9 prediction=polymorphism ref_cov=14/44 total_cov=43/44 RA 534 . NC_000913 2480474 0 G A consensus_score=307.4 frequency=1 major_base=A major_cov=56/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/29 RA 535 . NC_000913 2704512 0 C A bias_e_value=8.07089 bias_p_value=1.7388e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=192.7 fisher_strand_p_value=1.01675e-07 frequency=2.371e-01 ks_quality_p_value=1 major_base=C major_cov=31/43 major_frequency=7.629e-01 minor_base=A minor_cov=23/0 new_cov=23/0 polymorphism_frequency=2.371e-01 polymorphism_score=10.9 prediction=polymorphism ref_cov=31/43 total_cov=54/43 RA 536 . NC_000913 2722838 0 G T bias_e_value=0.0663157 bias_p_value=1.42871e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=182.3 fisher_strand_p_value=6.44658e-10 frequency=3.097e-01 ks_quality_p_value=1 major_base=G major_cov=43/35 major_frequency=6.903e-01 minor_base=T minor_cov=0/35 new_cov=0/35 polymorphism_frequency=3.097e-01 polymorphism_score=12.2 prediction=polymorphism ref_cov=43/35 total_cov=43/70 RA 537 . NC_000913 2767443 0 C A bias_e_value=3.40406e-05 bias_p_value=7.33373e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=177.7 fisher_strand_p_value=2.44123e-13 frequency=3.333e-01 ks_quality_p_value=1 major_base=C major_cov=17/47 major_frequency=6.667e-01 minor_base=A minor_cov=32/0 new_cov=32/0 polymorphism_frequency=3.333e-01 polymorphism_score=12.4 prediction=polymorphism ref_cov=17/47 total_cov=52/47 RA 538 . NC_000913 2767445 0 C A bias_e_value=5.81883e-08 bias_p_value=1.25361e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=144.3 fisher_strand_p_value=3.42419e-16 frequency=3.878e-01 ks_quality_p_value=1 major_base=C major_cov=13/47 major_frequency=6.122e-01 minor_base=A minor_cov=38/0 new_cov=38/0 polymorphism_frequency=3.878e-01 polymorphism_score=34.5 prediction=polymorphism ref_cov=13/47 total_cov=52/47 RA 539 . NC_000913 2767449 0 C A bias_e_value=0.000180119 bias_p_value=3.8805e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=202.3 fisher_strand_p_value=1.37043e-12 frequency=2.981e-01 ks_quality_p_value=1 major_base=C major_cov=21/52 major_frequency=7.019e-01 minor_base=A minor_cov=31/0 new_cov=31/0 polymorphism_frequency=2.981e-01 polymorphism_score=18.5 prediction=polymorphism ref_cov=21/52 total_cov=53/52 RA 540 . NC_000913 2784599 0 G A bias_e_value=3740900 bias_p_value=0.805941 consensus_score=579.5 fisher_strand_p_value=0.445783 frequency=1 ks_quality_p_value=1 major_base=A major_cov=73/92 major_frequency=9.940e-01 minor_base=C minor_cov=1/0 new_cov=73/92 polymorphism_frequency=9.940e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=74/92 RA 541 . NC_000913 2789285 0 G A consensus_score=338.6 frequency=1 major_base=A major_cov=50/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/45 RA 542 . NC_000913 2794383 0 G A consensus_score=253.9 frequency=1 major_base=A major_cov=31/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/40 RA 543 . NC_000913 2799156 0 G A bias_e_value=3798710 bias_p_value=0.818395 consensus_score=420.5 fisher_strand_p_value=0.461538 frequency=1 ks_quality_p_value=1 major_base=A major_cov=53/63 major_frequency=9.915e-01 minor_base=C minor_cov=1/0 new_cov=53/63 polymorphism_frequency=9.915e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/63 RA 544 . NC_000913 2799342 0 G A consensus_score=437.3 frequency=1 major_base=A major_cov=54/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/67 RA 545 . NC_000913 2803246 0 G A consensus_score=435.6 frequency=1 major_base=A major_cov=70/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=70/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=70/47 RA 546 . NC_000913 2815005 0 G A consensus_score=433.6 frequency=1 major_base=A major_cov=42/78 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/78 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/78 RA 547 . NC_000913 2816433 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=356.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=66/31 major_frequency=9.898e-01 minor_base=G minor_cov=1/0 new_cov=66/31 polymorphism_frequency=9.898e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=67/31 RA 548 . NC_000913 2827260 0 T C consensus_score=310.9 frequency=1 major_base=C major_cov=35/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/48 RA 549 . NC_000913 2845115 0 G A consensus_score=246.5 frequency=1 major_base=A major_cov=32/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/39 RA 550 . NC_000913 2856061 0 G A bias_e_value=3824330 bias_p_value=0.823915 consensus_score=351.6 fisher_strand_p_value=0.46875 frequency=1 ks_quality_p_value=1 major_base=A major_cov=44/51 major_frequency=9.896e-01 minor_base=C minor_cov=1/0 new_cov=44/51 polymorphism_frequency=9.896e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/51 RA 551 . NC_000913 2858682 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=359.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999798 major_base=A major_cov=53/46 major_frequency=9.900e-01 minor_base=G minor_cov=1/0 new_cov=53/46 polymorphism_frequency=9.900e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=1/0 total_cov=54/46 RA 552 . NC_000913 2862253 0 C T consensus_score=417.7 frequency=1 major_base=T major_cov=65/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=65/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=65/51 RA 553 . NC_000913 2864013 0 C T consensus_score=341.4 frequency=1 major_base=T major_cov=61/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/33 RA 554 . NC_000913 2871025 0 G A consensus_score=271.1 frequency=1 major_base=A major_cov=44/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/31 RA 555 . NC_000913 2878239 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=238.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=46/25 major_frequency=9.861e-01 minor_base=C minor_cov=1/0 new_cov=46/25 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/25 RA 556 . NC_000913 2885029 0 G A bias_e_value=2630500 bias_p_value=0.566716 consensus_score=374.0 fisher_strand_p_value=0.229111 frequency=1 ks_quality_p_value=1 major_base=A major_cov=49/55 major_frequency=9.811e-01 minor_base=C minor_cov=2/0 new_cov=49/55 polymorphism_frequency=9.811e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/55 RA 557 . NC_000913 2889826 0 T C consensus_score=316.8 frequency=1 major_base=C major_cov=52/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/31 RA 558 . NC_000913 2894133 0 G A consensus_score=430.0 frequency=1 major_base=A major_cov=81/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=81/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=81/38 RA 559 . NC_000913 2899661 0 G A bias_e_value=2492680 bias_p_value=0.537025 consensus_score=400.9 fisher_strand_p_value=0.209545 frequency=1 ks_quality_p_value=1 major_base=A major_cov=50/61 major_frequency=9.823e-01 minor_base=C minor_cov=2/0 new_cov=50/61 polymorphism_frequency=9.823e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/0 total_cov=52/61 RA 560 . NC_000913 2926071 0 C T consensus_score=403.8 frequency=1 major_base=T major_cov=48/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/62 RA 561 . NC_000913 2930384 0 C T consensus_score=235.4 frequency=1 major_base=T major_cov=27/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/38 RA 562 . NC_000913 2935697 0 C T consensus_score=364.7 frequency=1 major_base=T major_cov=42/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/59 RA 563 . NC_000913 2945513 0 C T bias_e_value=3719040 bias_p_value=0.801231 consensus_score=260.9 fisher_strand_p_value=0.44 frequency=1 ks_quality_p_value=1 major_base=T major_cov=42/32 major_frequency=9.867e-01 minor_base=G minor_cov=0/1 new_cov=42/32 polymorphism_frequency=9.867e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/33 RA 564 . NC_000913 2947323 0 C T consensus_score=341.5 frequency=1 major_base=T major_cov=35/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/63 RA 565 . NC_000913 2949648 0 C T consensus_score=297.4 frequency=1 major_base=T major_cov=50/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/32 RA 566 . NC_000913 2949800 0 C T bias_e_value=3360640 bias_p_value=0.724018 consensus_score=312.8 fisher_strand_p_value=0.356322 frequency=1 ks_quality_p_value=1 major_base=T major_cov=56/30 major_frequency=9.885e-01 minor_base=G minor_cov=0/1 new_cov=56/30 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/31 RA 567 . NC_000913 2953166 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=359.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/69 major_frequency=9.902e-01 minor_base=G minor_cov=0/1 new_cov=32/69 polymorphism_frequency=9.902e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/70 RA 568 . NC_000913 2958080 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=443.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=58/62 major_frequency=9.917e-01 minor_base=G minor_cov=0/1 new_cov=58/62 polymorphism_frequency=9.917e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/63 RA 569 . NC_000913 2966838 0 C T consensus_score=392.0 frequency=1 major_base=T major_cov=53/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/58 RA 570 . NC_000913 2967877 0 C T consensus_score=365.2 frequency=1 major_base=T major_cov=40/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/62 RA 571 . NC_000913 2983800 0 C T consensus_score=373.4 frequency=1 major_base=T major_cov=42/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/61 RA 572 . NC_000913 2984177 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=423.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=70/51 major_frequency=9.918e-01 minor_base=C minor_cov=1/0 new_cov=70/51 polymorphism_frequency=9.918e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=71/51 RA 573 . NC_000913 2985807 0 C T consensus_score=534.7 frequency=1 major_base=T major_cov=65/87 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=65/87 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=65/87 RA 574 . NC_000913 2986436 0 C T consensus_score=512.0 frequency=1 major_base=T major_cov=66/74 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=66/74 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/74 RA 575 . NC_000913 2987975 0 C T consensus_score=487.8 frequency=1 major_base=T major_cov=53/84 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/84 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/84 RA 576 . NC_000913 2990087 0 C T consensus_score=567.3 frequency=1 major_base=T major_cov=76/78 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=76/78 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=76/78 RA 577 . NC_000913 2990480 0 C A bias_e_value=0.00404195 bias_p_value=8.70799e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=257.8 fisher_strand_p_value=3.47155e-11 frequency=3.118e-01 ks_quality_p_value=1 major_base=C major_cov=65/52 major_frequency=6.882e-01 minor_base=A minor_cov=53/0 new_cov=53/0 polymorphism_frequency=3.118e-01 polymorphism_score=20.3 prediction=polymorphism ref_cov=65/52 total_cov=118/52 RA 578 . NC_000913 2994899 0 C T consensus_score=680.7 frequency=1 major_base=T major_cov=92/93 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/93 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/93 RA 579 . NC_000913 3008693 0 C T consensus_score=420.6 frequency=1 major_base=T major_cov=74/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=74/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=74/41 RA 580 . NC_000913 3009580 0 G A consensus_score=315.7 frequency=1 major_base=A major_cov=41/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/46 RA 581 . NC_000913 3010747 0 G A consensus_score=259.7 frequency=1 major_base=A major_cov=40/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/33 RA 582 . NC_000913 3012153 0 G A consensus_score=343.8 frequency=1 major_base=A major_cov=36/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/59 RA 583 . NC_000913 3022051 0 G A consensus_score=269.8 frequency=1 major_base=A major_cov=39/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/39 RA 584 . NC_000913 3042914 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=424.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=49/72 major_frequency=9.918e-01 minor_base=G minor_cov=0/1 new_cov=49/72 polymorphism_frequency=9.918e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/73 RA 585 . NC_000913 3049690 0 C T consensus_score=345.9 frequency=1 major_base=T major_cov=47/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/49 RA 586 . NC_000913 3054886 0 G T bias_e_value=1.80782e-07 bias_p_value=3.89479e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=210.6 fisher_strand_p_value=1.09884e-15 frequency=2.647e-01 ks_quality_p_value=1 major_base=G major_cov=12/63 major_frequency=7.353e-01 minor_base=T minor_cov=27/0 new_cov=27/0 polymorphism_frequency=2.647e-01 polymorphism_score=17.4 prediction=polymorphism ref_cov=12/63 total_cov=41/63 RA 587 . NC_000913 3054894 0 G T bias_e_value=0.000258208 bias_p_value=5.56286e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=173.4 fisher_strand_p_value=1.99083e-12 frequency=2.549e-01 ks_quality_p_value=1 major_base=G major_cov=15/61 major_frequency=7.451e-01 minor_base=T minor_cov=25/1 new_cov=25/1 polymorphism_frequency=2.549e-01 polymorphism_score=20.7 prediction=polymorphism ref_cov=15/61 total_cov=40/62 RA 588 . NC_000913 3056165 0 C T consensus_score=316.5 frequency=1 major_base=T major_cov=40/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/46 RA 589 . NC_000913 3057590 0 C T consensus_score=315.6 frequency=1 major_base=T major_cov=44/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/44 RA 590 . NC_000913 3061808 0 C T consensus_score=306.8 frequency=1 major_base=T major_cov=44/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/41 RA 591 . NC_000913 3062319 0 C T consensus_score=291.1 frequency=1 major_base=T major_cov=32/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/50 RA 592 . NC_000913 3062736 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=165.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=24/24 major_frequency=9.796e-01 minor_base=C minor_cov=0/1 new_cov=24/24 polymorphism_frequency=9.796e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=24/25 RA 593 . NC_000913 3071691 0 C T consensus_score=335.0 frequency=1 major_base=T major_cov=46/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/47 RA 594 . NC_000913 3073577 0 C T consensus_score=250.3 frequency=1 major_base=T major_cov=44/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/24 RA 595 . NC_000913 3076412 0 C T consensus_score=306.2 frequency=1 major_base=T major_cov=49/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/37 RA 596 . NC_000913 3082464 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=378.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=47/54 major_frequency=9.902e-01 minor_base=G minor_cov=0/1 new_cov=47/54 polymorphism_frequency=9.902e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/55 RA 597 . NC_000913 3087433 0 C T consensus_score=253.8 frequency=1 major_base=T major_cov=40/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/32 RA 598 . NC_000913 3093260 0 C T consensus_score=393.4 frequency=1 major_base=T major_cov=42/68 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/68 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/68 RA 599 . NC_000913 3099265 0 C T consensus_score=416.2 frequency=1 major_base=T major_cov=50/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/65 RA 600 . NC_000913 3099484 0 C T consensus_score=408.9 frequency=1 major_base=T major_cov=63/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=63/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=63/48 RA 601 . NC_000913 3100557 0 C T consensus_score=454.3 frequency=1 major_base=T major_cov=77/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=77/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=77/47 RA 602 . NC_000913 3112243 0 C T consensus_score=385.3 frequency=1 major_base=T major_cov=54/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/55 RA 603 . NC_000913 3114520 0 C T consensus_score=289.5 frequency=1 major_base=T major_cov=37/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/47 RA 604 . NC_000913 3160906 0 C T consensus_score=322.1 frequency=1 major_base=T major_cov=47/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/40 RA 605 . NC_000913 3164048 0 C T consensus_score=312.9 frequency=1 major_base=T major_cov=37/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/55 RA 606 . NC_000913 3167365 0 C T consensus_score=263.1 frequency=1 major_base=T major_cov=23/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/49 RA 607 . NC_000913 3173521 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=408.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=67/46 major_frequency=9.912e-01 minor_base=G minor_cov=1/0 new_cov=67/46 polymorphism_frequency=9.912e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=68/46 RA 608 . NC_000913 3175472 0 C T consensus_score=356.7 frequency=1 major_base=T major_cov=47/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/52 RA 609 . NC_000913 3175628 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=330.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=43/48 major_frequency=9.891e-01 minor_base=G minor_cov=0/1 new_cov=43/48 polymorphism_frequency=9.891e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=44/49 RA 610 . NC_000913 3190892 0 G A consensus_score=541.9 frequency=1 major_base=A major_cov=62/85 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/85 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/85 RA 611 . NC_000913 3193282 0 C T consensus_score=395.0 frequency=1 major_base=T major_cov=60/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/46 RA 612 . NC_000913 3215106 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=317.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=42/47 major_frequency=9.889e-01 minor_base=G minor_cov=0/1 new_cov=42/47 polymorphism_frequency=9.889e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/48 RA 613 . NC_000913 3218479 0 C T bias_e_value=2286670 bias_p_value=0.492641 consensus_score=313.9 fisher_strand_p_value=0.182328 frequency=1 ks_quality_p_value=1 major_base=T major_cov=53/38 major_frequency=9.785e-01 minor_base=G minor_cov=0/2 new_cov=53/38 polymorphism_frequency=9.785e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/40 RA 614 . NC_000913 3220489 0 C T consensus_score=188.3 frequency=1 major_base=T major_cov=29/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/24 RA 615 . NC_000913 3232319 0 C T bias_e_value=3799820 bias_p_value=0.818636 consensus_score=235.6 fisher_strand_p_value=0.462687 frequency=1 ks_quality_p_value=0.998192 major_base=T major_cov=36/30 major_frequency=9.851e-01 minor_base=G minor_cov=0/1 new_cov=36/30 polymorphism_frequency=9.851e-01 polymorphism_score=-6.4 prediction=consensus ref_cov=0/0 total_cov=36/31 RA 616 . NC_000913 3240171 0 G A bias_e_value=3975200 bias_p_value=0.856419 consensus_score=474.5 fisher_strand_p_value=0.514504 frequency=1 ks_quality_p_value=1 major_base=A major_cov=53/76 major_frequency=9.847e-01 minor_base=G minor_cov=0/2 new_cov=53/76 polymorphism_frequency=9.847e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=53/78 RA 617 . NC_000913 3243005 0 C T consensus_score=264.8 frequency=1 major_base=T major_cov=51/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/24 RA 618 . NC_000913 3248308 0 C T bias_e_value=3409500 bias_p_value=0.734544 consensus_score=324.0 fisher_strand_p_value=0.366667 frequency=1 ks_quality_p_value=1 major_base=T major_cov=57/32 major_frequency=9.889e-01 minor_base=G minor_cov=0/1 new_cov=57/32 polymorphism_frequency=9.889e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/33 RA 619 . NC_000913 3248681 0 C T consensus_score=389.9 frequency=1 major_base=T major_cov=48/64 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/64 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/64 RA 620 . NC_000913 3251737 0 C T consensus_score=406.5 frequency=1 major_base=T major_cov=46/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/66 RA 621 . NC_000913 3254120 0 C T consensus_score=410.2 frequency=1 major_base=T major_cov=62/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/50 RA 622 . NC_000913 3254853 0 C T bias_e_value=3247010 bias_p_value=0.699537 consensus_score=410.3 fisher_strand_p_value=0.333333 frequency=1 ks_quality_p_value=1 major_base=T major_cov=76/37 major_frequency=9.912e-01 minor_base=C minor_cov=0/1 new_cov=76/37 polymorphism_frequency=9.912e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=76/38 RA 623 . NC_000913 3255992 0 G A consensus_score=308.9 frequency=1 major_base=A major_cov=34/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/52 RA 624 . NC_000913 3261943 0 G A bias_e_value=3639690 bias_p_value=0.784136 consensus_score=289.5 fisher_strand_p_value=0.419753 frequency=1 ks_quality_p_value=1 major_base=A major_cov=33/47 major_frequency=9.877e-01 minor_base=C minor_cov=1/0 new_cov=33/47 polymorphism_frequency=9.877e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/47 RA 625 . NC_000913 3268852 0 G A consensus_score=625.2 frequency=1 major_base=A major_cov=68/100 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=68/100 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=68/100 RA 626 . NC_000913 3268970 0 A G bias_e_value=3882030 bias_p_value=0.836346 consensus_score=667.2 fisher_strand_p_value=0.485549 frequency=1 ks_quality_p_value=1 major_base=G major_cov=89/83 major_frequency=9.942e-01 minor_base=A minor_cov=0/1 new_cov=89/83 polymorphism_frequency=9.942e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=89/84 RA 627 . NC_000913 3273052 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=385.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999281 major_base=T major_cov=44/61 major_frequency=9.906e-01 minor_base=G minor_cov=0/1 new_cov=44/61 polymorphism_frequency=9.906e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/62 RA 628 . NC_000913 3276711 0 C T consensus_score=327.8 frequency=1 major_base=T major_cov=45/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/46 RA 629 . NC_000913 3478611 0 C T consensus_score=453.4 frequency=1 major_base=T major_cov=75/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=75/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=75/49 RA 630 . NC_000913 3481609 0 G A consensus_score=301.6 frequency=1 major_base=A major_cov=34/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/49 RA 631 . NC_000913 3486205 0 C A consensus_score=312.3 frequency=1 major_base=A major_cov=47/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/41 RA 632 . NC_000913 3486450 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=341.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=64/31 major_frequency=9.896e-01 minor_base=C minor_cov=1/0 new_cov=64/31 polymorphism_frequency=9.896e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=65/31 RA 633 . NC_000913 3486873 0 C T consensus_score=322.4 frequency=1 major_base=T major_cov=34/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/55 RA 634 . NC_000913 3488712 0 C T consensus_score=353.3 frequency=1 major_base=T major_cov=55/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/43 RA 635 . NC_000913 3493759 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=390.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=77/33 major_frequency=9.910e-01 minor_base=G minor_cov=1/0 new_cov=77/33 polymorphism_frequency=9.910e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=78/33 RA 636 . NC_000913 3518251 0 G A bias_e_value=3644910 bias_p_value=0.785262 consensus_score=344.7 fisher_strand_p_value=0.421053 frequency=1 ks_quality_p_value=1 major_base=A major_cov=39/55 major_frequency=9.895e-01 minor_base=C minor_cov=1/0 new_cov=39/55 polymorphism_frequency=9.895e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/55 RA 637 . NC_000913 3519801 0 G A bias_e_value=4638920 bias_p_value=0.999411 consensus_score=287.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.965885 major_base=A major_cov=47/36 major_frequency=9.881e-01 minor_base=C minor_cov=1/0 new_cov=47/36 polymorphism_frequency=9.881e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=0/0 total_cov=48/36 RA 638 . NC_000913 3538195 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=215.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=27/35 major_frequency=9.841e-01 minor_base=G minor_cov=0/1 new_cov=27/35 polymorphism_frequency=9.841e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=27/36 RA 639 . NC_000913 3538357 0 G A consensus_score=283.3 frequency=1 major_base=A major_cov=37/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/44 RA 640 . NC_000913 3539759 0 G A bias_e_value=3463180 bias_p_value=0.746109 consensus_score=407.8 fisher_strand_p_value=0.378378 frequency=1 ks_quality_p_value=1 major_base=A major_cov=69/41 major_frequency=9.910e-01 minor_base=C minor_cov=0/1 new_cov=69/41 polymorphism_frequency=9.910e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/42 RA 641 . NC_000913 3548459 0 C T bias_e_value=3654820 bias_p_value=0.787397 consensus_score=282.7 fisher_strand_p_value=0.423529 frequency=1 ks_quality_p_value=1 major_base=T major_cov=49/35 major_frequency=9.882e-01 minor_base=G minor_cov=0/1 new_cov=49/35 polymorphism_frequency=9.882e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/36 RA 642 . NC_000913 3550402 0 C T consensus_score=421.2 frequency=1 major_base=T major_cov=69/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=69/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/45 RA 643 . NC_000913 3560455 1 . G bias_e_value=4640290 bias_p_value=0.999706 consensus_score=369.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.975852 major_base=G major_cov=47/52 major_frequency=9.900e-01 minor_base=. minor_cov=0/1 new_cov=47/52 polymorphism_frequency=9.900e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=0/1 total_cov=47/53 RA 644 . NC_000913 3563694 0 C T consensus_score=409.5 frequency=1 major_base=T major_cov=76/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=76/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=76/45 RA 645 . NC_000913 3602706 0 C A bias_e_value=265479 bias_p_value=0.057195 consensus_reject=FREQUENCY_CUTOFF consensus_score=105.1 fisher_strand_p_value=0.0102489 frequency=2.167e-01 ks_quality_p_value=1 major_base=C major_cov=28/19 major_frequency=7.833e-01 minor_base=A minor_cov=2/11 new_cov=2/11 polymorphism_frequency=2.167e-01 polymorphism_score=12.4 prediction=polymorphism ref_cov=28/19 total_cov=30/30 RA 646 . NC_000913 3796966 0 C T consensus_score=611.0 frequency=1 major_base=T major_cov=110/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/55 RA 647 . NC_000913 3814113 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=363.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999239 major_base=T major_cov=48/54 major_frequency=9.903e-01 minor_base=C minor_cov=0/1 new_cov=48/54 polymorphism_frequency=9.903e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=0/1 total_cov=48/55 RA 648 . NC_000913 3911533 0 C A bias_e_value=0.000505067 bias_p_value=1.08812e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=192.2 fisher_strand_p_value=3.99364e-12 frequency=3.385e-01 ks_quality_p_value=1 major_base=C major_cov=38/48 major_frequency=6.615e-01 minor_base=A minor_cov=44/0 new_cov=44/0 polymorphism_frequency=3.385e-01 polymorphism_score=26.6 prediction=polymorphism ref_cov=38/48 total_cov=82/48 RA 649 . NC_000913 3933450 0 C T consensus_score=279.7 frequency=1 major_base=T major_cov=28/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/50 RA 650 . NC_000913 3934173 0 C T consensus_score=446.2 frequency=1 major_base=T major_cov=72/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=72/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=72/55 RA 651 . NC_000913 3941568 0 G A bias_e_value=3802000 bias_p_value=0.819104 consensus_score=352.5 fisher_strand_p_value=0.469565 frequency=1 ks_quality_p_value=0.98486 major_base=A major_cov=53/61 major_frequency=9.913e-01 minor_base=G minor_cov=1/0 new_cov=53/61 polymorphism_frequency=9.913e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=1/0 total_cov=55/61 RA 652 . NC_000913 3942034 0 G A consensus_score=218.3 frequency=1 major_base=A major_cov=27/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/51 RA 653 . NC_000913 4061400 0 C T consensus_score=523.7 frequency=1 major_base=T major_cov=74/70 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=74/70 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=74/70 RA 654 . NC_000913 4146389 1 . T bias_e_value=3664350 bias_p_value=0.789449 consensus_score=184.8 fisher_strand_p_value=0.425926 frequency=1 ks_quality_p_value=1 major_base=T major_cov=31/22 major_frequency=9.815e-01 minor_base=C minor_cov=0/1 new_cov=31/22 polymorphism_frequency=9.815e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=31/24 RA 655 . NC_000913 4213310 0 G T bias_e_value=7.65845e-05 bias_p_value=1.64994e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=314.6 fisher_strand_p_value=5.6501e-13 frequency=2.214e-01 ks_quality_p_value=1 major_base=G major_cov=74/35 major_frequency=7.786e-01 minor_base=T minor_cov=0/31 new_cov=0/31 polymorphism_frequency=2.214e-01 polymorphism_score=10.3 prediction=polymorphism ref_cov=74/35 total_cov=74/66 RA 656 . NC_000913 4214131 0 C T consensus_score=493.4 frequency=1 major_base=T major_cov=90/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=90/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=90/46 RA 657 . NC_000913 4218867 0 C T bias_e_value=3898130 bias_p_value=0.839816 consensus_score=366.0 fisher_strand_p_value=0.490385 frequency=1 ks_quality_p_value=1 major_base=T major_cov=53/50 major_frequency=9.904e-01 minor_base=G minor_cov=0/1 new_cov=53/50 polymorphism_frequency=9.904e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/51 RA 658 . NC_000913 4226385 0 C T consensus_score=271.5 frequency=1 major_base=T major_cov=32/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/45 RA 659 . NC_000913 4250729 0 C T bias_e_value=3897510 bias_p_value=0.839681 consensus_score=563.8 fisher_strand_p_value=0.490196 frequency=1 ks_quality_p_value=1 major_base=T major_cov=78/74 major_frequency=9.935e-01 minor_base=C minor_cov=0/1 new_cov=78/74 polymorphism_frequency=9.935e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=78/75 RA 660 . NC_000913 4253539 0 C T consensus_score=333.2 frequency=1 major_base=T major_cov=54/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/37 RA 661 . NC_000913 4259194 0 G A consensus_score=394.4 frequency=1 major_base=A major_cov=58/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/51 RA 662 . NC_000913 4270229 0 G A bias_e_value=3846970 bias_p_value=0.828793 consensus_score=361.9 fisher_strand_p_value=0.475248 frequency=1 ks_quality_p_value=1 major_base=A major_cov=47/53 major_frequency=9.901e-01 minor_base=C minor_cov=1/0 new_cov=47/53 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/53 RA 663 . NC_000913 4277732 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=394.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999295 major_base=A major_cov=51/55 major_frequency=9.907e-01 minor_base=C minor_cov=0/1 new_cov=51/55 polymorphism_frequency=9.907e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/0 total_cov=51/56 RA 664 . NC_000913 4286371 0 G A consensus_score=284.8 frequency=1 major_base=A major_cov=39/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/40 RA 665 . NC_000913 4286403 0 G A consensus_score=305.5 frequency=1 major_base=A major_cov=40/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/44 RA 666 . NC_000913 4290944 0 G A bias_e_value=3942750 bias_p_value=0.849429 consensus_score=253.5 fisher_strand_p_value=0.504144 frequency=1 ks_quality_p_value=1 major_base=A major_cov=41/32 major_frequency=9.733e-01 minor_base=G minor_cov=2/0 new_cov=41/32 polymorphism_frequency=9.733e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=2/0 total_cov=44/32 RA 667 . NC_000913 4296190 0 A G bias_e_value=4423460 bias_p_value=0.952992 consensus_reject=FREQUENCY_CUTOFF consensus_score=46.9 fisher_strand_p_value=1 frequency=2.188e-01 ks_quality_p_value=0.709486 major_base=A major_cov=13/12 major_frequency=7.812e-01 minor_base=G minor_cov=4/3 new_cov=4/3 polymorphism_frequency=2.188e-01 polymorphism_score=13.1 prediction=polymorphism ref_cov=13/12 total_cov=17/15 RA 668 . NC_000913 4296191 0 A C bias_e_value=1850160 bias_p_value=0.3986 consensus_reject=FREQUENCY_CUTOFF consensus_score=33.4 fisher_strand_p_value=0.131657 frequency=2.903e-01 ks_quality_p_value=1 major_base=A major_cov=10/12 major_frequency=7.097e-01 minor_base=C minor_cov=7/2 new_cov=7/2 polymorphism_frequency=2.903e-01 polymorphism_score=17.1 prediction=polymorphism ref_cov=10/12 total_cov=17/15 RA 669 . NC_000913 4296268 0 T C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=66.4 fisher_strand_p_value=1 frequency=2.162e-01 ks_quality_p_value=1 major_base=T major_cov=20/9 major_frequency=7.838e-01 minor_base=C minor_cov=6/2 new_cov=6/2 polymorphism_frequency=2.162e-01 polymorphism_score=11.7 prediction=polymorphism ref_cov=20/9 total_cov=26/11 RA 670 . NC_000913 4296380 1 . C bias_e_value=2970340 bias_p_value=0.639932 consensus_score=186.7 fisher_strand_p_value=0.285714 frequency=1 ks_quality_p_value=0.989664 major_base=C major_cov=40/15 major_frequency=9.821e-01 minor_base=T minor_cov=0/1 new_cov=40/15 polymorphism_frequency=9.821e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/0 total_cov=40/16 RA 671 . NC_000913 4296380 2 . G consensus_score=194.8 frequency=1 major_base=G major_cov=40/16 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/16 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/16 RA 672 . NC_000913 4298639 0 G A consensus_score=287.5 frequency=1 major_base=A major_cov=59/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/21 RA 673 . NC_000913 4302032 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=364.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=70/37 major_frequency=9.907e-01 minor_base=G minor_cov=1/0 new_cov=70/37 polymorphism_frequency=9.907e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=71/37 RA 674 . NC_000913 4302462 0 G A bias_e_value=3247010 bias_p_value=0.699537 consensus_score=426.5 fisher_strand_p_value=0.333333 frequency=1 ks_quality_p_value=1 major_base=A major_cov=38/78 major_frequency=9.915e-01 minor_base=C minor_cov=1/0 new_cov=38/78 polymorphism_frequency=9.915e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/78 RA 675 . NC_000913 4303109 0 G A consensus_score=400.4 frequency=1 major_base=A major_cov=51/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/60 RA 676 . NC_000913 4306957 0 G A consensus_score=297.7 frequency=1 major_base=A major_cov=21/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/61 RA 677 . NC_000913 4310026 0 C T consensus_score=283.2 frequency=1 major_base=T major_cov=34/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/47 RA 678 . NC_000913 4315749 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=254.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=38/34 major_frequency=9.863e-01 minor_base=C minor_cov=1/0 new_cov=38/34 polymorphism_frequency=9.863e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=39/34 RA 679 . NC_000913 4316019 0 C T consensus_score=273.7 frequency=1 major_base=T major_cov=41/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/36 RA 680 . NC_000913 4316390 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=192.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=17/37 major_frequency=9.818e-01 minor_base=G minor_cov=0/1 new_cov=17/37 polymorphism_frequency=9.818e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/38 RA 681 . NC_000913 4316898 0 C T consensus_score=199.4 frequency=1 major_base=T major_cov=36/19 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/19 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/19 RA 682 . NC_000913 4317597 0 C T consensus_score=223.9 frequency=1 major_base=T major_cov=30/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/33 RA 683 . NC_000913 4317641 0 C T consensus_score=223.3 frequency=1 major_base=T major_cov=28/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/35 RA 684 . NC_000913 4317944 0 C T consensus_score=214.7 frequency=1 major_base=T major_cov=28/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/33 RA 685 . NC_000913 4318776 0 C T bias_e_value=4641430 bias_p_value=0.999952 consensus_score=254.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.990267 major_base=T major_cov=27/44 major_frequency=9.861e-01 minor_base=C minor_cov=0/1 new_cov=27/44 polymorphism_frequency=9.861e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=27/45 RA 686 . NC_000913 4319494 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=224.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/31 major_frequency=9.844e-01 minor_base=G minor_cov=0/1 new_cov=32/31 polymorphism_frequency=9.844e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/32 RA 687 . NC_000913 4325150 0 G A consensus_score=331.2 frequency=1 major_base=A major_cov=61/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/34 RA 688 . NC_000913 4326061 0 G A bias_e_value=3671480 bias_p_value=0.790985 consensus_score=132.6 fisher_strand_p_value=0.431818 frequency=1 ks_quality_p_value=0.990531 major_base=A major_cov=25/18 major_frequency=9.773e-01 minor_base=G minor_cov=0/1 new_cov=25/18 polymorphism_frequency=9.773e-01 polymorphism_score=-5.4 prediction=consensus ref_cov=0/1 total_cov=25/19 RA 689 . NC_000913 4329790 0 G A consensus_score=241.8 frequency=1 major_base=A major_cov=39/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/30 RA 690 . NC_000913 4336958 0 C T consensus_score=297.0 frequency=1 major_base=T major_cov=39/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/47 RA 691 . NC_000913 4339222 0 C T consensus_score=334.0 frequency=1 major_base=T major_cov=42/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/51 RA 692 . NC_000913 4342807 0 C T consensus_score=358.3 frequency=1 major_base=T major_cov=41/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/56 RA 693 . NC_000913 4353441 0 C T consensus_score=351.5 frequency=1 major_base=T major_cov=52/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/48 RA 694 . NC_000913 4360665 0 C T consensus_score=442.1 frequency=1 major_base=T major_cov=70/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=70/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=70/50 RA 695 . NC_000913 4360965 0 C A bias_e_value=0.00047523 bias_p_value=1.02384e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=275.5 fisher_strand_p_value=3.74901e-12 frequency=2.537e-01 ks_quality_p_value=1 major_base=C major_cov=37/63 major_frequency=7.463e-01 minor_base=A minor_cov=34/0 new_cov=34/0 polymorphism_frequency=2.537e-01 polymorphism_score=17.3 prediction=polymorphism ref_cov=37/63 total_cov=71/63 RA 696 . NC_000913 4363741 0 C T consensus_score=339.3 frequency=1 major_base=T major_cov=43/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/48 RA 697 . NC_000913 4368175 0 C T consensus_score=499.5 frequency=1 major_base=T major_cov=69/69 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=69/69 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/69 RA 698 . NC_000913 4369251 0 C T bias_e_value=4641500 bias_p_value=0.999966 consensus_score=334.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.991798 major_base=T major_cov=32/61 major_frequency=9.894e-01 minor_base=C minor_cov=0/1 new_cov=32/61 polymorphism_frequency=9.894e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=32/62 RA 699 . NC_000913 4377648 0 C T consensus_score=411.2 frequency=1 major_base=T major_cov=78/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=78/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=78/41 RA 700 . NC_000913 4380790 0 C T consensus_score=237.9 frequency=1 major_base=T major_cov=30/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/41 RA 701 . NC_000913 4380900 0 C T consensus_score=270.5 frequency=1 major_base=T major_cov=38/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/38 RA 702 . NC_000913 4382616 0 C T consensus_score=478.7 frequency=1 major_base=T major_cov=69/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=69/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/61 RA 703 . NC_000913 4382970 0 C T bias_e_value=4641590 bias_p_value=0.999987 consensus_score=361.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.994962 major_base=T major_cov=42/57 major_frequency=9.900e-01 minor_base=C minor_cov=0/1 new_cov=42/57 polymorphism_frequency=9.900e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=42/58 RA 704 . NC_000913 4391611 0 C T consensus_score=316.4 frequency=1 major_base=T major_cov=34/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/52 RA 705 . NC_000913 4393631 0 C T bias_e_value=3279730 bias_p_value=0.706586 consensus_score=374.7 fisher_strand_p_value=0.339806 frequency=1 ks_quality_p_value=1 major_base=T major_cov=68/34 major_frequency=9.903e-01 minor_base=G minor_cov=0/1 new_cov=68/34 polymorphism_frequency=9.903e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=68/35 RA 706 . NC_000913 4393792 0 C T consensus_score=355.3 frequency=1 major_base=T major_cov=49/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/49 RA 707 . NC_000913 4396787 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=298.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=41/42 major_frequency=9.881e-01 minor_base=C minor_cov=0/1 new_cov=41/42 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=41/43 RA 708 . NC_000913 4399104 0 C T consensus_score=299.3 frequency=1 major_base=T major_cov=34/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/51 RA 709 . NC_000913 4405238 0 C T consensus_score=356.7 frequency=1 major_base=T major_cov=49/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/51 RA 710 . NC_000913 4410409 0 G A consensus_score=602.4 frequency=1 major_base=A major_cov=89/81 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=89/81 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=89/81 RA 711 . NC_000913 4413615 0 G A consensus_score=310.0 frequency=1 major_base=A major_cov=60/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/28 RA 712 . NC_000913 4435880 0 G A consensus_score=327.0 frequency=1 major_base=A major_cov=52/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/38 RA 713 . NC_000913 4438359 0 G A consensus_score=567.1 frequency=1 major_base=A major_cov=83/75 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=83/75 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=83/75 RA 714 . NC_000913 4438403 0 G A bias_e_value=3910640 bias_p_value=0.84251 consensus_score=611.2 fisher_strand_p_value=0.494186 frequency=1 ks_quality_p_value=1 major_base=A major_cov=87/84 major_frequency=9.942e-01 minor_base=G minor_cov=0/1 new_cov=87/84 polymorphism_frequency=9.942e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=87/85 RA 715 . NC_000913 4444962 0 G A consensus_score=290.4 frequency=1 major_base=A major_cov=37/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/45 RA 716 . NC_000913 4447525 0 G A consensus_score=411.5 frequency=1 major_base=A major_cov=55/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/60 RA 717 . NC_000913 4449507 0 G A consensus_score=415.8 frequency=1 major_base=A major_cov=53/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/62 RA 718 . NC_000913 4461722 0 G A consensus_score=334.2 frequency=1 major_base=A major_cov=45/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/47 RA 719 . NC_000913 4462867 0 G A consensus_score=457.2 frequency=1 major_base=A major_cov=73/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=73/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=73/53 RA 720 . NC_000913 4477303 0 G A consensus_score=407.9 frequency=1 major_base=A major_cov=51/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/62 RA 721 . NC_000913 4479109 0 G A consensus_score=353.2 frequency=1 major_base=A major_cov=30/68 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/68 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/68 RA 722 . NC_000913 4479694 0 G A consensus_score=457.4 frequency=1 major_base=A major_cov=83/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=83/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=83/49 RA 723 . NC_000913 4539264 0 C T consensus_score=461.1 frequency=1 major_base=T major_cov=68/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=68/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=68/60 RA 724 . NC_000913 4542683 0 T . bias_e_value=4641650 bias_p_value=1 consensus_score=769.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=81/68 major_frequency=9.868e-01 minor_base=T minor_cov=1/1 new_cov=81/68 polymorphism_frequency=9.868e-01 polymorphism_score=0.7 prediction=consensus ref_cov=1/1 total_cov=82/69 RA 725 . NC_000913 4545733 0 G A consensus_score=430.6 frequency=1 major_base=A major_cov=67/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=67/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=67/62 RA 726 . NC_000913 4559285 0 G A bias_e_value=3999490 bias_p_value=0.861652 consensus_score=310.8 fisher_strand_p_value=0.522472 frequency=1 ks_quality_p_value=1 major_base=A major_cov=53/34 major_frequency=9.775e-01 minor_base=C minor_cov=2/0 new_cov=53/34 polymorphism_frequency=9.775e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/34 RA 727 . NC_000913 4561613 0 G A consensus_score=362.5 frequency=1 major_base=A major_cov=48/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/51 RA 728 . NC_000913 4571292 0 G A consensus_score=304.6 frequency=1 major_base=A major_cov=48/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/38 RA 729 . NC_000913 4572651 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=427.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=82/40 major_frequency=9.919e-01 minor_base=G minor_cov=1/0 new_cov=82/40 polymorphism_frequency=9.919e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=83/40 RA 730 . NC_000913 4577641 0 G A bias_e_value=4641640 bias_p_value=0.999998 consensus_score=554.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997934 major_base=A major_cov=61/94 major_frequency=9.936e-01 minor_base=G minor_cov=0/1 new_cov=61/94 polymorphism_frequency=9.936e-01 polymorphism_score=-6.9 prediction=consensus ref_cov=0/1 total_cov=61/96 RA 731 . NC_000913 4600636 0 G A bias_e_value=3861020 bias_p_value=0.831819 consensus_score=441.2 fisher_strand_p_value=0.479339 frequency=1 ks_quality_p_value=1 major_base=A major_cov=63/57 major_frequency=9.917e-01 minor_base=G minor_cov=0/1 new_cov=63/57 polymorphism_frequency=9.917e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=63/58 RA 732 . NC_000913 4610221 0 G A consensus_score=364.6 frequency=1 major_base=A major_cov=59/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/43 RA 733 . NC_000913 4613753 0 G A consensus_score=354.0 frequency=1 major_base=A major_cov=55/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/51 MC 734 . NC_000913 257908 258683 767 0 left_inside_cov=0 left_outside_cov=130 right_inside_cov=0 right_outside_cov=130 MC 735 . NC_000913 1196304 1211472 0 0 left_inside_cov=34 left_outside_cov=36 right_inside_cov=35 right_outside_cov=38 MC 736 . NC_000913 1294035 1294175 0 0 left_inside_cov=0 left_outside_cov=120 right_inside_cov=0 right_outside_cov=120 MC 737 . NC_000913 1978495 1979270 0 767 left_inside_cov=0 left_outside_cov=139 right_inside_cov=0 right_outside_cov=122 MC 738 . NC_000913 2558699 2565488 0 0 left_inside_cov=0 left_outside_cov=115 right_inside_cov=1 right_outside_cov=116 MC 739 . NC_000913 3423865 3424493 369 254 left_inside_cov=35 left_outside_cov=36 right_inside_cov=35 right_outside_cov=36 MC 740 . NC_000913 3682261 3682294 0 0 left_inside_cov=0 left_outside_cov=122 right_inside_cov=0 right_outside_cov=122 JC 741 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 coverage_minus=64 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=299 key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0 max_left=295 max_left_minus=295 max_left_plus=271 max_min_left=149 max_min_left_minus=149 max_min_left_plus=148 max_min_right=146 max_min_right_minus=146 max_min_right_plus=134 max_pos_hash_score=598 max_right=299 max_right_minus=297 max_right_plus=299 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.17 new_junction_read_count=119 polymorphism_frequency=1.000e+00 pos_hash_score=71 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=299 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=299 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=117 JC 742 . NC_000913 57276 1 NC_000913 382590 -1 0 alignment_overlap=0 coverage_minus=50 coverage_plus=51 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__57276__1__NC_000913__382590__-1__0____300__300__0__1 max_left=298 max_left_minus=298 max_left_plus=262 max_min_left=140 max_min_left_minus=134 max_min_left_plus=140 max_min_right=141 max_min_right_minus=140 max_min_right_plus=141 max_pos_hash_score=598 max_right=289 max_right_minus=289 max_right_plus=281 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=1.01 new_junction_read_count=102 polymorphism_frequency=1.000e+00 pos_hash_score=61 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=101 JC 743 . NC_000913 57280 -1 NC_000913 381260 1 0 alignment_overlap=0 coverage_minus=60 coverage_plus=40 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__57280__-1__NC_000913__381260__1__0____300__300__0__1 max_left=299 max_left_minus=295 max_left_plus=299 max_min_left=149 max_min_left_minus=149 max_min_left_plus=139 max_min_right=150 max_min_right_minus=150 max_min_right_plus=137 max_pos_hash_score=598 max_right=297 max_right_minus=297 max_right_plus=297 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.01 new_junction_read_count=102 polymorphism_frequency=1.000e+00 pos_hash_score=68 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=100 JC 744 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=48 coverage_plus=80 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=291 key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0 max_left=288 max_left_minus=288 max_left_plus=288 max_min_left=145 max_min_left_minus=145 max_min_left_plus=143 max_min_right=146 max_min_right_minus=146 max_min_right_plus=144 max_pos_hash_score=582 max_right=290 max_right_minus=290 max_right_plus=280 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.32 new_junction_read_count=130 polymorphism_frequency=1.000e+00 pos_hash_score=84 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=299 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=128 JC 745 . NC_000913 279163 1 NC_000913 2666074 1 0 alignment_overlap=0 coverage_minus=62 coverage_plus=55 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__279163__1__NC_000913__2666074__1__0____300__300__1__0 max_left=289 max_left_minus=289 max_left_plus=282 max_min_left=145 max_min_left_minus=144 max_min_left_plus=145 max_min_right=141 max_min_right_minus=139 max_min_right_plus=141 max_pos_hash_score=598 max_right=294 max_right_minus=292 max_right_plus=294 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.17 new_junction_read_count=119 polymorphism_frequency=1.000e+00 pos_hash_score=85 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=117 JC 746 . NC_000913 291401 -1 NC_000913 2666082 -1 0 alignment_overlap=1 coverage_minus=59 coverage_plus=39 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__291402__-1__NC_000913__2666082__-1__1____300__300__1__0 max_left=276 max_left_minus=276 max_left_plus=275 max_min_left=148 max_min_left_minus=148 max_min_left_plus=142 max_min_right=146 max_min_right_minus=146 max_min_right_plus=139 max_pos_hash_score=596 max_right=285 max_right_minus=284 max_right_plus=285 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.97 new_junction_read_count=98 polymorphism_frequency=1.000e+00 pos_hash_score=69 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=1 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=98 JC 747 . NC_000913 381260 1 NC_000913 382183 -1 0 alignment_overlap=0 coverage_minus=29 coverage_plus=27 flanking_left=300 flanking_right=300 frequency=NA junction_possible_overlap_registers=299 key=NC_000913__381260__1__NC_000913__382183__-1__0____300__300__1__1 max_left=297 max_left_minus=269 max_left_plus=297 max_min_left=145 max_min_left_minus=137 max_min_left_plus=145 max_min_right=142 max_min_right_minus=142 max_min_right_plus=122 max_pos_hash_score=598 max_right=299 max_right_minus=299 max_right_plus=211 neg_log10_pos_hash_p_value=1.4 new_junction_coverage=0.55 new_junction_read_count=56 polymorphism_frequency=NA pos_hash_score=41 prediction=unknown side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=56 JC 748 . NC_000913 381260 1 NC_000913 1105376 1 0 alignment_overlap=1 coverage_minus=65 coverage_plus=33 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__381260__1__NC_000913__1105375__1__1____300__300__1__0 max_left=296 max_left_minus=292 max_left_plus=296 max_min_left=146 max_min_left_minus=146 max_min_left_plus=133 max_min_right=137 max_min_right_minus=137 max_min_right_plus=122 max_pos_hash_score=596 max_right=295 max_right_minus=295 max_right_plus=295 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.00 new_junction_read_count=101 polymorphism_frequency=1.000e+00 pos_hash_score=66 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=98 JC 749 . NC_000913 382179 1 NC_000913 382590 -1 0 alignment_overlap=2 coverage_minus=22 coverage_plus=11 flanking_left=300 flanking_right=300 frequency=NA junction_possible_overlap_registers=297 key=NC_000913__382177__1__NC_000913__382590__-1__2____300__300__1__1 max_left=295 max_left_minus=282 max_left_plus=295 max_min_left=145 max_min_left_minus=145 max_min_left_plus=116 max_min_right=147 max_min_right_minus=141 max_min_right_plus=147 max_pos_hash_score=594 max_right=289 max_right_minus=289 max_right_plus=256 neg_log10_pos_hash_p_value=2.6 new_junction_coverage=0.34 new_junction_read_count=34 polymorphism_frequency=NA pos_hash_score=29 prediction=unknown side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=2 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=33 JC 750 . NC_000913 566774 -1 NC_000913 568036 1 0 alignment_overlap=2 coverage_minus=18 coverage_plus=20 flanking_left=300 flanking_right=300 frequency=3.379e-01 junction_possible_overlap_registers=297 key=NC_000913__566774__-1__NC_000913__568034__1__2____300__300__0__0 max_left=224 max_left_minus=224 max_left_plus=223 max_min_left=148 max_min_left_minus=146 max_min_left_plus=148 max_min_right=148 max_min_right_minus=148 max_min_right_plus=143 max_pos_hash_score=594 max_right=185 max_right_minus=158 max_right_plus=185 neg_log10_pos_hash_p_value=3.2 new_junction_coverage=0.58 new_junction_read_count=58 polymorphism_frequency=3.379e-01 pos_hash_score=25 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.10 side_1_overlap=2 side_1_possible_overlap_registers=299 side_1_read_count=112 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.15 side_2_overlap=0 side_2_possible_overlap_registers=297 side_2_read_count=116 side_2_redundant=0 total_non_overlap_reads=38 JC 751 . NC_000913 568449 1 NC_000913 1469240 -1 0 alignment_overlap=0 coverage_minus=40 coverage_plus=65 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__568449__1__NC_000913__1469240__-1__0____300__300__0__1 max_left=297 max_left_minus=276 max_left_plus=297 max_min_left=142 max_min_left_minus=137 max_min_left_plus=142 max_min_right=146 max_min_right_minus=146 max_min_right_plus=137 max_pos_hash_score=598 max_right=296 max_right_minus=296 max_right_plus=287 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.05 new_junction_read_count=107 polymorphism_frequency=1.000e+00 pos_hash_score=66 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=105 JC 752 . NC_000913 568453 -1 NC_000913 1467910 1 0 alignment_overlap=1 coverage_minus=53 coverage_plus=69 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__568454__-1__NC_000913__1467910__1__1____300__300__0__1 max_left=293 max_left_minus=293 max_left_plus=289 max_min_left=148 max_min_left_minus=148 max_min_left_plus=140 max_min_right=148 max_min_right_minus=147 max_min_right_plus=148 max_pos_hash_score=596 max_right=283 max_right_minus=283 max_right_plus=278 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.23 new_junction_read_count=124 polymorphism_frequency=1.000e+00 pos_hash_score=76 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=122 JC 753 . NC_000913 696616 -1 NC_000913 696664 1 -117 alignment_overlap=-117 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=8.156e-02 junction_possible_overlap_registers=182 key=NC_000913__696616__-1__NC_000913__696664__1__-117__TCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGA__300__300__0__0 max_left=137 max_left_minus=136 max_left_plus=137 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=68 max_min_right_minus=68 max_min_right_plus=68 max_pos_hash_score=364 max_right=68 max_right_minus=68 max_right_plus=68 neg_log10_pos_hash_p_value=6.7 new_junction_coverage=0.06 new_junction_read_count=4 polymorphism_frequency=8.156e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.78 side_1_overlap=0 side_1_possible_overlap_registers=299 side_1_read_count=79 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.68 side_2_overlap=0 side_2_possible_overlap_registers=299 side_2_read_count=69 side_2_redundant=0 total_non_overlap_reads=4 unique_read_sequence=TCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGA JC 754 . NC_000913 696616 -1 NC_000913 696940 1 0 alignment_overlap=29 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.321e-02 junction_possible_overlap_registers=270 key=NC_000913__696616__-1__NC_000913__696911__1__29____300__300__0__0 max_left=108 max_left_minus=107 max_left_plus=108 max_min_left=108 max_min_left_minus=107 max_min_left_plus=108 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=540 max_right=185 max_right_minus=185 max_right_plus=185 neg_log10_pos_hash_p_value=9.0 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=5.321e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.78 side_1_overlap=29 side_1_possible_overlap_registers=299 side_1_read_count=79 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.78 side_2_overlap=0 side_2_possible_overlap_registers=270 side_2_read_count=71 side_2_redundant=0 total_non_overlap_reads=4 JC 755 . NC_000913 696741 -1 NC_000913 697135 1 0 alignment_overlap=78 coverage_minus=4 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.522e-01 junction_possible_overlap_registers=221 key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0 max_left=175 max_left_minus=175 max_left_plus=175 max_min_left=107 max_min_left_minus=107 max_min_left_plus=101 max_min_right=92 max_min_right_minus=92 max_min_right_plus=92 max_pos_hash_score=442 max_right=121 max_right_minus=115 max_right_plus=121 neg_log10_pos_hash_p_value=5.9 new_junction_coverage=0.13 new_junction_read_count=10 polymorphism_frequency=1.522e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.74 side_1_overlap=78 side_1_possible_overlap_registers=299 side_1_read_count=75 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.75 side_2_overlap=0 side_2_possible_overlap_registers=221 side_2_read_count=56 side_2_redundant=0 total_non_overlap_reads=9 JC 756 . NC_000913 780629 -1 NC_000913 780919 1 0 alignment_overlap=76 coverage_minus=2 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=7.913e-02 junction_possible_overlap_registers=223 key=NC_000913__780629__-1__NC_000913__780843__1__76____300__300__0__0 max_left=187 max_left_minus=165 max_left_plus=187 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=65 max_min_right_minus=59 max_min_right_plus=65 max_pos_hash_score=446 max_right=65 max_right_minus=59 max_right_plus=65 neg_log10_pos_hash_p_value=7.3 new_junction_coverage=0.07 new_junction_read_count=5 polymorphism_frequency=7.913e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.88 side_1_overlap=76 side_1_possible_overlap_registers=299 side_1_read_count=89 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.66 side_2_overlap=0 side_2_possible_overlap_registers=223 side_2_read_count=50 side_2_redundant=0 total_non_overlap_reads=5 JC 757 . NC_000913 781222 -1 NC_000913 781653 1 0 alignment_overlap=76 coverage_minus=4 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1.362e-01 junction_possible_overlap_registers=223 key=NC_000913__781222__-1__NC_000913__781577__1__76____300__300__0__0 max_left=99 max_left_minus=99 max_left_plus=89 max_min_left=99 max_min_left_minus=99 max_min_left_plus=89 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=446 max_right=191 max_right_minus=159 max_right_plus=191 neg_log10_pos_hash_p_value=6.4 new_junction_coverage=0.09 new_junction_read_count=7 polymorphism_frequency=1.362e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.51 side_1_overlap=76 side_1_possible_overlap_registers=299 side_1_read_count=52 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.66 side_2_overlap=0 side_2_possible_overlap_registers=223 side_2_read_count=50 side_2_redundant=0 total_non_overlap_reads=7 JC 758 . NC_000913 1105380 -1 NC_000913 1467910 1 0 alignment_overlap=0 coverage_minus=37 coverage_plus=67 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__1105380__-1__NC_000913__1467910__1__0____300__300__0__1 max_left=296 max_left_minus=282 max_left_plus=296 max_min_left=144 max_min_left_minus=144 max_min_left_plus=140 max_min_right=150 max_min_right_minus=150 max_min_right_plus=142 max_pos_hash_score=598 max_right=297 max_right_minus=297 max_right_plus=279 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.07 new_junction_read_count=109 polymorphism_frequency=1.000e+00 pos_hash_score=75 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=104 JC 759 . NC_000913 1286906 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=1.061e-01 junction_possible_overlap_registers=279 key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=271 max_left_minus=271 max_left_plus=242 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=49 max_min_right_minus=34 max_min_right_plus=49 max_pos_hash_score=558 max_right=49 max_right_minus=34 max_right_plus=49 neg_log10_pos_hash_p_value=9.2 new_junction_coverage=0.06 new_junction_read_count=6 polymorphism_frequency=1.061e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.58 side_1_overlap=20 side_1_possible_overlap_registers=299 side_1_read_count=59 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.49 side_2_overlap=0 side_2_possible_overlap_registers=279 side_2_read_count=46 side_2_redundant=0 total_non_overlap_reads=4 JC 760 . NC_000913 1287329 -1 NC_000913 1287624 1 0 alignment_overlap=87 coverage_minus=3 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.798e-01 junction_possible_overlap_registers=212 key=NC_000913__1287329__-1__NC_000913__1287537__1__87____300__300__0__0 max_left=202 max_left_minus=175 max_left_plus=202 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=81 max_min_right_minus=65 max_min_right_plus=81 max_pos_hash_score=424 max_right=81 max_right_minus=65 max_right_plus=81 neg_log10_pos_hash_p_value=5.7 new_junction_coverage=0.13 new_junction_read_count=9 polymorphism_frequency=1.798e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=87 side_1_possible_overlap_registers=299 side_1_read_count=65 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.50 side_2_overlap=0 side_2_possible_overlap_registers=212 side_2_read_count=36 side_2_redundant=0 total_non_overlap_reads=8 JC 761 . NC_000913 1294034 -1 NC_000913 1294176 1 0 alignment_overlap=10 coverage_minus=54 coverage_plus=63 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=289 key=NC_000913__1294034__-1__NC_000913__1294166__1__10____300__300__0__0 max_left=287 max_left_minus=287 max_left_plus=278 max_min_left=139 max_min_left_minus=132 max_min_left_plus=139 max_min_right=139 max_min_right_minus=134 max_min_right_plus=139 max_pos_hash_score=578 max_right=280 max_right_minus=278 max_right_plus=280 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.22 new_junction_read_count=120 polymorphism_frequency=1.000e+00 pos_hash_score=76 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=10 side_1_possible_overlap_registers=299 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=117 JC 762 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=61 coverage_plus=62 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0 max_left=294 max_left_minus=287 max_left_plus=294 max_min_left=146 max_min_left_minus=139 max_min_left_plus=146 max_min_right=143 max_min_right_minus=143 max_min_right_plus=142 max_pos_hash_score=590 max_right=295 max_right_minus=283 max_right_plus=295 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.27 new_junction_read_count=127 polymorphism_frequency=1.000e+00 pos_hash_score=76 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=299 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=123 JC 763 . NC_000913 1303072 -1 NC_000913 1303085 1 0 alignment_overlap=1 coverage_minus=54 coverage_plus=59 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__1303072__-1__NC_000913__1303084__1__1____300__300__0__0 max_left=293 max_left_minus=283 max_left_plus=293 max_min_left=148 max_min_left_minus=148 max_min_left_plus=148 max_min_right=149 max_min_right_minus=146 max_min_right_plus=149 max_pos_hash_score=596 max_right=290 max_right_minus=288 max_right_plus=290 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.16 new_junction_read_count=117 polymorphism_frequency=9.915e-01 pos_hash_score=71 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.01 side_1_overlap=1 side_1_possible_overlap_registers=299 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=298 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=113 JC 764 . NC_000913 1397238 -1 NC_000913 1978494 -1 0 alignment_overlap=0 coverage_minus=66 coverage_plus=68 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0 max_left=295 max_left_minus=294 max_left_plus=295 max_min_left=144 max_min_left_minus=144 max_min_left_plus=139 max_min_right=143 max_min_right_minus=135 max_min_right_plus=143 max_pos_hash_score=598 max_right=297 max_right_minus=297 max_right_plus=296 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.36 new_junction_read_count=138 polymorphism_frequency=1.000e+00 pos_hash_score=92 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=299 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=134 JC 765 . NC_000913 1469240 -1 NC_000913 1792772 1 0 alignment_overlap=2 coverage_minus=54 coverage_plus=48 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=297 key=NC_000913__1469240__-1__NC_000913__1792770__1__2____300__300__1__0 max_left=295 max_left_minus=295 max_left_plus=294 max_min_left=146 max_min_left_minus=145 max_min_left_plus=146 max_min_right=141 max_min_right_minus=137 max_min_right_plus=141 max_pos_hash_score=594 max_right=295 max_right_minus=295 max_right_plus=277 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.06 new_junction_read_count=107 polymorphism_frequency=1.000e+00 pos_hash_score=69 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=292 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=102 JC 766 . NC_000913 1651548 -1 NC_000913 1792776 -1 0 alignment_overlap=0 coverage_minus=43 coverage_plus=41 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__1651548__-1__NC_000913__1792776__-1__0____300__300__1__0 max_left=279 max_left_minus=279 max_left_plus=271 max_min_left=149 max_min_left_minus=149 max_min_left_plus=147 max_min_right=148 max_min_right_minus=148 max_min_right_plus=145 max_pos_hash_score=598 max_right=298 max_right_minus=283 max_right_plus=298 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.87 new_junction_read_count=88 polymorphism_frequency=1.000e+00 pos_hash_score=62 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=84 JC 767 . NC_000913 1978503 1 NC_000913 2406787 -1 0 alignment_overlap=1 coverage_minus=58 coverage_plus=52 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__1978503__1__NC_000913__2406788__-1__1____300__300__1__0 max_left=293 max_left_minus=293 max_left_plus=255 max_min_left=148 max_min_left_minus=148 max_min_left_plus=148 max_min_right=146 max_min_right_minus=139 max_min_right_plus=146 max_pos_hash_score=596 max_right=297 max_right_minus=284 max_right_plus=297 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.11 new_junction_read_count=112 polymorphism_frequency=1.000e+00 pos_hash_score=77 prediction=consensus read_count_offset=8 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=110 JC 768 . NC_000913 1979270 -1 NC_000913 2406780 1 0 alignment_overlap=0 coverage_minus=58 coverage_plus=45 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__1979270__-1__NC_000913__2406780__1__0____300__300__1__0 max_left=295 max_left_minus=289 max_left_plus=295 max_min_left=149 max_min_left_minus=148 max_min_left_plus=149 max_min_right=149 max_min_right_minus=147 max_min_right_plus=149 max_pos_hash_score=598 max_right=298 max_right_minus=298 max_right_plus=297 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.03 new_junction_read_count=104 polymorphism_frequency=9.902e-01 pos_hash_score=74 prediction=consensus read_count_offset=8 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=103 JC 769 . NC_000913 1979271 1 NC_000913 2102947 -1 0 alignment_overlap=0 coverage_minus=33 coverage_plus=87 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1 max_left=299 max_left_minus=294 max_left_plus=299 max_min_left=145 max_min_left_minus=143 max_min_left_plus=145 max_min_right=150 max_min_right_minus=145 max_min_right_plus=150 max_pos_hash_score=598 max_right=292 max_right_minus=292 max_right_plus=292 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.20 new_junction_read_count=122 polymorphism_frequency=1.000e+00 pos_hash_score=78 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=299 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=120 JC 770 . NC_000913 2068941 1 NC_000913 2319850 1 0 alignment_overlap=0 coverage_minus=60 coverage_plus=57 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__2068941__1__NC_000913__2319850__1__0____300__300__1__0 max_left=279 max_left_minus=279 max_left_plus=273 max_min_left=149 max_min_left_minus=139 max_min_left_plus=149 max_min_right=150 max_min_right_minus=140 max_min_right_plus=150 max_pos_hash_score=598 max_right=296 max_right_minus=289 max_right_plus=296 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.21 new_junction_read_count=123 polymorphism_frequency=1.000e+00 pos_hash_score=74 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=117 JC 771 . NC_000913 2269876 1 NC_000913 2288919 1 0 alignment_overlap=1 coverage_minus=49 coverage_plus=62 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__2269875__1__NC_000913__2288919__1__1____300__300__0__1 max_left=287 max_left_minus=273 max_left_plus=287 max_min_left=137 max_min_left_minus=137 max_min_left_plus=134 max_min_right=149 max_min_right_minus=147 max_min_right_plus=149 max_pos_hash_score=596 max_right=296 max_right_minus=296 max_right_plus=294 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.12 new_junction_read_count=113 polymorphism_frequency=1.000e+00 pos_hash_score=82 prediction=consensus read_count_offset=4 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=111 JC 772 . NC_000913 2269879 -1 NC_000913 2290113 -1 0 alignment_overlap=0 coverage_minus=39 coverage_plus=72 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__2269879__-1__NC_000913__2290113__-1__0____300__300__0__1 max_left=298 max_left_minus=295 max_left_plus=298 max_min_left=149 max_min_left_minus=117 max_min_left_plus=149 max_min_right=144 max_min_right_minus=144 max_min_right_plus=130 max_pos_hash_score=598 max_right=289 max_right_minus=281 max_right_plus=289 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.09 new_junction_read_count=111 polymorphism_frequency=9.910e-01 pos_hash_score=77 prediction=consensus read_count_offset=4 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.01 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=111 JC 773 . NC_000913 2288919 1 NC_000913 4536236 1 0 alignment_overlap=1 coverage_minus=52 coverage_plus=51 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__2288919__1__NC_000913__4536235__1__1____300__300__1__0 max_left=277 max_left_minus=272 max_left_plus=277 max_min_left=134 max_min_left_minus=132 max_min_left_plus=134 max_min_right=138 max_min_right_minus=137 max_min_right_plus=138 max_pos_hash_score=596 max_right=296 max_right_minus=296 max_right_plus=286 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.05 new_junction_read_count=106 polymorphism_frequency=1.000e+00 pos_hash_score=67 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=103 JC 774 . NC_000913 2290113 -1 NC_000913 4536239 -1 0 alignment_overlap=0 coverage_minus=80 coverage_plus=60 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__2290113__-1__NC_000913__4536239__-1__0____300__300__1__0 max_left=294 max_left_minus=294 max_left_plus=294 max_min_left=142 max_min_left_minus=130 max_min_left_plus=142 max_min_right=147 max_min_right_minus=139 max_min_right_plus=147 max_pos_hash_score=598 max_right=298 max_right_minus=298 max_right_plus=288 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.41 new_junction_read_count=143 polymorphism_frequency=1.000e+00 pos_hash_score=91 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=140 JC 775 . NC_000913 2319854 -1 NC_000913 2997691 -1 0 alignment_overlap=0 coverage_minus=37 coverage_plus=47 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__2319854__-1__NC_000913__2997691__-1__0____300__300__0__1 max_left=295 max_left_minus=277 max_left_plus=295 max_min_left=148 max_min_left_minus=148 max_min_left_plus=137 max_min_right=150 max_min_right_minus=150 max_min_right_plus=145 max_pos_hash_score=598 max_right=296 max_right_minus=296 max_right_plus=292 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.89 new_junction_read_count=90 polymorphism_frequency=1.000e+00 pos_hash_score=54 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=84 JC 776 . NC_000913 2357730 -1 NC_000913 2357926 1 0 alignment_overlap=40 coverage_minus=5 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.080e-02 junction_possible_overlap_registers=259 key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0 max_left=214 max_left_minus=214 max_left_plus=82 max_min_left=117 max_min_left_minus=117 max_min_left_plus=82 max_min_right=57 max_min_right_minus=57 max_min_right_plus=0 max_pos_hash_score=518 max_right=198 max_right_minus=197 max_right_plus=198 neg_log10_pos_hash_p_value=7.2 new_junction_coverage=0.08 new_junction_read_count=7 polymorphism_frequency=6.080e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.23 side_1_overlap=40 side_1_possible_overlap_registers=299 side_1_read_count=125 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.23 side_2_overlap=0 side_2_possible_overlap_registers=259 side_2_read_count=108 side_2_redundant=0 total_non_overlap_reads=7 JC 777 . NC_000913 2558698 -1 NC_000913 2565489 1 0 alignment_overlap=8 coverage_minus=56 coverage_plus=56 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=291 key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0 max_left=288 max_left_minus=269 max_left_plus=288 max_min_left=143 max_min_left_minus=143 max_min_left_plus=133 max_min_right=146 max_min_right_minus=133 max_min_right_plus=146 max_pos_hash_score=582 max_right=290 max_right_minus=290 max_right_plus=290 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.16 new_junction_read_count=115 polymorphism_frequency=1.000e+00 pos_hash_score=78 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=299 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=112 JC 778 . NC_000913 3187426 -1 NC_000913 3737137 1 0 alignment_overlap=1 coverage_minus=77 coverage_plus=50 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__3187426__-1__NC_000913__3737136__1__1____300__300__1__0 max_left=297 max_left_minus=297 max_left_plus=295 max_min_left=149 max_min_left_minus=148 max_min_left_plus=149 max_min_right=148 max_min_right_minus=140 max_min_right_plus=148 max_pos_hash_score=596 max_right=296 max_right_minus=296 max_right_plus=296 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.28 new_junction_read_count=129 polymorphism_frequency=1.000e+00 pos_hash_score=83 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=127 JC 779 . NC_000913 3469040 -1 NC_000913 3469344 1 0 alignment_overlap=20 coverage_minus=1 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=5.418e-02 junction_possible_overlap_registers=279 key=NC_000913__3469040__-1__NC_000913__3469324__1__20____300__300__0__0 max_left=238 max_left_minus=141 max_left_plus=238 max_min_left=128 max_min_left_minus=0 max_min_left_plus=128 max_min_right=139 max_min_right_minus=139 max_min_right_plus=42 max_pos_hash_score=558 max_right=154 max_right_minus=139 max_right_plus=154 neg_log10_pos_hash_p_value=9.2 new_junction_coverage=0.05 new_junction_read_count=5 polymorphism_frequency=5.418e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.80 side_1_overlap=20 side_1_possible_overlap_registers=299 side_1_read_count=81 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.05 side_2_overlap=0 side_2_possible_overlap_registers=279 side_2_read_count=99 side_2_redundant=0 total_non_overlap_reads=4 JC 780 . NC_000913 3648146 -1 NC_000913 3648378 1 0 alignment_overlap=58 coverage_minus=9 coverage_plus=8 flanking_left=300 flanking_right=300 frequency=1.543e-01 junction_possible_overlap_registers=241 key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0 max_left=228 max_left_minus=228 max_left_plus=125 max_min_left=117 max_min_left_minus=107 max_min_left_plus=117 max_min_right=117 max_min_right_minus=77 max_min_right_plus=117 max_pos_hash_score=482 max_right=188 max_right_minus=188 max_right_plus=177 neg_log10_pos_hash_p_value=4.4 new_junction_coverage=0.22 new_junction_read_count=18 polymorphism_frequency=1.543e-01 pos_hash_score=14 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.20 side_1_overlap=58 side_1_possible_overlap_registers=299 side_1_read_count=122 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.21 side_2_overlap=0 side_2_possible_overlap_registers=241 side_2_read_count=99 side_2_redundant=0 total_non_overlap_reads=17 JC 781 . NC_000913 3682260 -1 NC_000913 3682295 1 0 alignment_overlap=2 coverage_minus=56 coverage_plus=65 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=297 key=NC_000913__3682260__-1__NC_000913__3682293__1__2____300__300__0__0 max_left=289 max_left_minus=275 max_left_plus=289 max_min_left=147 max_min_left_minus=146 max_min_left_plus=147 max_min_right=146 max_min_right_minus=146 max_min_right_plus=143 max_pos_hash_score=594 max_right=286 max_right_minus=286 max_right_plus=283 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.21 new_junction_read_count=122 polymorphism_frequency=1.000e+00 pos_hash_score=83 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=2 side_1_possible_overlap_registers=299 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=297 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=121 JC 782 . NC_000913 3737141 -1 NC_000913 4498181 1 0 alignment_overlap=0 coverage_minus=53 coverage_plus=67 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__3737141__-1__NC_000913__4498181__1__0____300__300__0__1 max_left=299 max_left_minus=290 max_left_plus=299 max_min_left=149 max_min_left_minus=149 max_min_left_plus=137 max_min_right=148 max_min_right_minus=148 max_min_right_plus=143 max_pos_hash_score=598 max_right=297 max_right_minus=296 max_right_plus=297 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.21 new_junction_read_count=123 polymorphism_frequency=1.000e+00 pos_hash_score=87 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=120 JC 783 . NC_000913 4123923 1 NC_000913 4498181 1 0 alignment_overlap=1 coverage_minus=30 coverage_plus=63 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__4123922__1__NC_000913__4498181__1__1____300__300__0__1 max_left=295 max_left_minus=247 max_left_plus=295 max_min_left=143 max_min_left_minus=143 max_min_left_plus=139 max_min_right=146 max_min_right_minus=146 max_min_right_plus=144 max_pos_hash_score=596 max_right=292 max_right_minus=281 max_right_plus=292 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.95 new_junction_read_count=96 polymorphism_frequency=1.000e+00 pos_hash_score=63 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=93 JC 784 . NC_000913 4123927 -1 NC_000913 4499511 -1 0 alignment_overlap=1 coverage_minus=33 coverage_plus=40 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____300__300__0__1 max_left=293 max_left_minus=293 max_left_plus=280 max_min_left=141 max_min_left_minus=141 max_min_left_plus=140 max_min_right=141 max_min_right_minus=103 max_min_right_plus=141 max_pos_hash_score=596 max_right=294 max_right_minus=272 max_right_plus=294 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.74 new_junction_read_count=75 polymorphism_frequency=9.866e-01 pos_hash_score=56 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.01 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=73 JC 785 . NC_000913 4135180 1 NC_000913 4498181 1 0 alignment_overlap=0 coverage_minus=42 coverage_plus=51 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__4135180__1__NC_000913__4498181__1__0____300__300__0__1 max_left=295 max_left_minus=270 max_left_plus=295 max_min_left=141 max_min_left_minus=141 max_min_left_plus=139 max_min_right=147 max_min_right_minus=141 max_min_right_plus=147 max_pos_hash_score=598 max_right=296 max_right_minus=296 max_right_plus=292 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.94 new_junction_read_count=95 polymorphism_frequency=1.000e+00 pos_hash_score=63 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=93 JC 786 . NC_000913 4135184 -1 NC_000913 4499511 -1 0 alignment_overlap=0 coverage_minus=38 coverage_plus=54 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__4135184__-1__NC_000913__4499511__-1__0____300__300__0__1 max_left=297 max_left_minus=297 max_left_plus=265 max_min_left=149 max_min_left_minus=149 max_min_left_plus=140 max_min_right=149 max_min_right_minus=144 max_min_right_plus=149 max_pos_hash_score=598 max_right=296 max_right_minus=296 max_right_plus=284 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.93 new_junction_read_count=94 polymorphism_frequency=1.000e+00 pos_hash_score=64 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=92 JC 787 . NC_000913 4542682 1 NC_000913 4542996 1 0 alignment_overlap=9 coverage_minus=5 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=6.959e-02 junction_possible_overlap_registers=290 key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0 max_left=282 max_left_minus=282 max_left_plus=262 max_min_left=136 max_min_left_minus=136 max_min_left_plus=114 max_min_right=91 max_min_right_minus=72 max_min_right_plus=91 max_pos_hash_score=580 max_right=278 max_right_minus=278 max_right_plus=177 neg_log10_pos_hash_p_value=7.4 new_junction_coverage=0.10 new_junction_read_count=10 polymorphism_frequency=6.959e-02 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.51 side_1_overlap=9 side_1_possible_overlap_registers=299 side_1_read_count=153 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.21 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=119 side_2_redundant=0 total_non_overlap_reads=9 JC 788 . NC_000913 4542690 -1 NC_000913 4542986 -1 0 alignment_overlap=9 coverage_minus=4 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.369e-02 junction_possible_overlap_registers=290 key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0 max_left=240 max_left_minus=240 max_left_plus=64 max_min_left=127 max_min_left_minus=127 max_min_left_plus=64 max_min_right=141 max_min_right_minus=141 max_min_right_plus=0 max_pos_hash_score=580 max_right=276 max_right_minus=276 max_right_plus=228 neg_log10_pos_hash_p_value=8.9 new_junction_coverage=0.05 new_junction_read_count=5 polymorphism_frequency=3.369e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.71 side_1_overlap=9 side_1_possible_overlap_registers=299 side_1_read_count=173 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.21 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=119 side_2_redundant=0 total_non_overlap_reads=5 JC 789 . NC_000913 4606166 -1 NC_000913 4606403 1 0 alignment_overlap=89 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.159e-02 junction_possible_overlap_registers=210 key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0 max_left=187 max_left_minus=187 max_left_plus=125 max_min_left=95 max_min_left_minus=95 max_min_left_plus=1 max_min_right=86 max_min_right_minus=2 max_min_right_plus=86 max_pos_hash_score=420 max_right=210 max_right_minus=136 max_right_plus=210 neg_log10_pos_hash_p_value=7.0 new_junction_coverage=0.07 new_junction_read_count=5 polymorphism_frequency=6.159e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.11 side_1_overlap=89 side_1_possible_overlap_registers=299 side_1_read_count=113 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.02 side_2_overlap=0 side_2_possible_overlap_registers=210 side_2_read_count=73 side_2_redundant=0 total_non_overlap_reads=5 UN 790 . 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