#=GENOME_DIFF	1.0
#=CREATED	19:59:39 03 Jun 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250516nextseq_run_rmdup/IH161_rmdup_R1R2_ -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH161_rmdup_R1.fastq.gz /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH161_rmdup_R2.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH161_rmdup_R1.fastq.gz
#=READSEQ	/ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH161_rmdup_R2.fastq.gz
#=CONVERTED-BASES	478115400
#=CONVERTED-READS	1593718
#=INPUT-BASES	478190700
#=INPUT-READS	1593969
#=MAPPED-BASES	455598021
#=MAPPED-READS	1521172
MOB	1	600,601	NC_000913	57276	IS2	1	5
SNP	2	188	NC_000913	71134	A
DEL	3	591,602	NC_000913	257908	776
SNP	4	190	NC_000913	557635	T
MOB	5	609,610	NC_000913	568449	IS2	-1	5
SNP	6	270	NC_000913	631633	A
SNP	7	272	NC_000913	828005	T
SNP	8	273	NC_000913	833233	T
SNP	9	275	NC_000913	834701	G
SNP	10	276	NC_000913	844834	T
SNP	11	279	NC_000913	953383	T
SNP	12	280	NC_000913	961088	T
SNP	13	281	NC_000913	973776	T
SNP	14	282	NC_000913	987152	T
SNP	15	284	NC_000913	1051393	T
SNP	16	285	NC_000913	1075684	T
MOB	17	606,613	NC_000913	1105376	IS2	-1	5
SNP	18	287	NC_000913	1164173	A
SNP	19	288	NC_000913	1184738	A
SNP	20	289	NC_000913	1188675	A
SNP	21	290	NC_000913	1190060	A
SNP	22	291	NC_000913	1196220	T
SNP	23	292	NC_000913	1196232	T
SNP	24	293	NC_000913	1196245	C
SNP	25	294	NC_000913	1196247	G
SNP	26	295	NC_000913	1196277	T
SNP	27	296	NC_000913	1196280	C
SNP	28	297	NC_000913	1196283	G
SNP	29	298	NC_000913	1196292	T
SNP	30	299	NC_000913	1196304	A
SNP	31	300	NC_000913	1196316	A
SNP	32	301	NC_000913	1196325	G
SNP	33	303	NC_000913	1214349	A
SNP	34	304	NC_000913	1222374	A
SNP	35	305	NC_000913	1224022	A
SNP	36	306	NC_000913	1237210	A
SNP	37	307	NC_000913	1290881	T
DEL	38	593,614	NC_000913	1294035	141
SNP	39	308	NC_000913	1297640	T
DEL	40	594,616	NC_000913	1303073	12
SNP	41	310	NC_000913	1337394	G
SNP	42	311	NC_000913	1353758	A
SNP	43	336	NC_000913	1429160	G
SNP	44	337	NC_000913	1429164	G
SNP	45	338	NC_000913	1429171	G
SNP	46	339	NC_000913	1429204	T
SNP	47	340	NC_000913	1429207	G
SNP	48	341	NC_000913	1429225	T
SNP	49	342	NC_000913	1429228	C
SNP	50	343	NC_000913	1429231	C
SUB	51	344,345	NC_000913	1429235	2	CA
SNP	52	346	NC_000913	1429240	T
SNP	53	347	NC_000913	1429243	C
SNP	54	348	NC_000913	1429246	T
SNP	55	349	NC_000913	1429249	T
SNP	56	350	NC_000913	1429252	A
SNP	57	351	NC_000913	1429255	A
SNP	58	352	NC_000913	1429258	G
SNP	59	353	NC_000913	1429261	C
SNP	60	354	NC_000913	1429273	C
SNP	61	355	NC_000913	1429291	A
SNP	62	356	NC_000913	1429297	G
SNP	63	357	NC_000913	1429300	G
SNP	64	358	NC_000913	1429319	T
SNP	65	359	NC_000913	1429345	G
SUB	66	360,361	NC_000913	1429353	2	TG
SNP	67	362	NC_000913	1429360	T
SNP	68	363	NC_000913	1429364	C
SNP	69	364	NC_000913	1429404	T
SUB	70	365,366	NC_000913	1429416	2	GT
SNP	71	367	NC_000913	1429425	A
SNP	72	368	NC_000913	1429435	A
SNP	73	369	NC_000913	1429442	G
SNP	74	370	NC_000913	1429444	C
SUB	75	371,372	NC_000913	1429453	2	TG
SUB	76	374,375	NC_000913	1429463	2	GC
SNP	77	376	NC_000913	1429466	C
SUB	78	377,378	NC_000913	1429470	2	TC
SUB	79	379,380	NC_000913	1429474	2	GG
SNP	80	381	NC_000913	1429479	T
SNP	81	382	NC_000913	1429482	T
SNP	82	383	NC_000913	1429484	A
SUB	83	384,385	NC_000913	1429492	2	AA
SNP	84	386	NC_000913	1429495	T
SNP	85	387	NC_000913	1429510	C
SNP	86	388	NC_000913	1429522	C
SNP	87	389	NC_000913	1429534	T
SNP	88	438	NC_000913	1464283	A
DEL	89	439	NC_000913	1494388	1
SNP	90	442	NC_000913	1517508	T
SNP	91	443	NC_000913	1574501	A
SNP	92	444	NC_000913	1618227	T
SNP	93	474	NC_000913	1652331	C
DEL	94	475	NC_000913	1667887	1
DEL	95	476	NC_000913	1744751	1
MOB	96	619,620	NC_000913	1792772	IS2	-1	5
SNP	97	477	NC_000913	1816913	T
SNP	98	478	NC_000913	1823728	A
SNP	99	479	NC_000913	1831435	A
SNP	100	480	NC_000913	1835860	A
SNP	101	481	NC_000913	1845475	A
SNP	102	482	NC_000913	1845912	A
SNP	103	483	NC_000913	1854305	T
SNP	104	484	NC_000913	1854927	T
SNP	105	485	NC_000913	1860532	A
SNP	106	486	NC_000913	1864475	A
SNP	107	487	NC_000913	1868152	A
SNP	108	488	NC_000913	1898386	A
SNP	109	489	NC_000913	1901679	A
SNP	110	490	NC_000913	1913979	T
SNP	111	491	NC_000913	1919587	A
SNP	112	492	NC_000913	1921166	T
SNP	113	494	NC_000913	1923685	T
SNP	114	495	NC_000913	1924639	T
SNP	115	496	NC_000913	1931811	T
SNP	116	497	NC_000913	1937945	T
SNP	117	498	NC_000913	1978243	T
SNP	118	499	NC_000913	2003264	T
SNP	119	500	NC_000913	2008426	T
SNP	120	501	NC_000913	2010262	A
SNP	121	502	NC_000913	2032423	A
SNP	122	503	NC_000913	2038532	A
SNP	123	504	NC_000913	2128907	A
DEL	124	505,506	NC_000913	2173363	2
SNP	125	508	NC_000913	2242121	G
MOB	126	625,626	NC_000913	2269876	IS5	1	4
MOB	127	624,629	NC_000913	2319850	IS2	1	5
SNP	128	511	NC_000913	2397444	A
MOB	129	621,622	NC_000913	2406780	IS1	-1	8
SNP	130	512	NC_000913	2422545	A
SNP	131	515	NC_000913	2520477	A
DEL	132	596,633	NC_000913	2558699	6790
SNP	133	516	NC_000913	2593230	T
SNP	134	517	NC_000913	2603685	T
SNP	135	518	NC_000913	2620332	T
SNP	136	519	NC_000913	2621166	T
SNP	137	520	NC_000913	2629883	T
SNP	138	521	NC_000913	2633906	T
SNP	139	522	NC_000913	2635195	T
SNP	140	523	NC_000913	2659219	T
MOB	141	603,604	NC_000913	2666074	IS1	1	9
SNP	142	525	NC_000913	2718323	T
SNP	143	526	NC_000913	2725642	T
SNP	144	527	NC_000913	2726122	T
SNP	145	528	NC_000913	2746691	T
SNP	146	529	NC_000913	2748463	T
SNP	147	530	NC_000913	2750150	T
SNP	148	531	NC_000913	2752143	T
SNP	149	544	NC_000913	3268970	G
SNP	150	548	NC_000913	3486205	A
INS	151	550	NC_000913	3560455	G
SNP	152	551	NC_000913	3577691	T
DEL	153	598,640	NC_000913	3682261	34
MOB	154	637,641	NC_000913	3737137	IS2	1	5
SNP	155	554	NC_000913	3776287	A
SNP	156	555	NC_000913	3791594	A
SNP	157	557	NC_000913	3852978	A
SNP	158	558	NC_000913	3906152	A
SNP	159	560	NC_000913	3913479	A
SNP	160	561	NC_000913	3917605	A
SNP	161	562	NC_000913	3922570	A
SNP	162	563	NC_000913	3928008	A
SNP	163	564	NC_000913	3959071	A
SNP	164	565	NC_000913	3959203	A
SNP	165	566	NC_000913	3966927	A
SNP	166	568	NC_000913	3975757	A
SNP	167	569	NC_000913	3985381	A
SNP	168	570	NC_000913	3985943	A
SNP	169	571	NC_000913	3994609	T
SNP	170	572	NC_000913	4028896	A
SNP	171	573	NC_000913	4056166	A
SNP	172	574	NC_000913	4057198	A
SNP	173	575	NC_000913	4060213	A
SNP	174	576	NC_000913	4068390	A
SNP	175	578	NC_000913	4091974	A
SNP	176	579	NC_000913	4092637	A
SNP	177	580	NC_000913	4095578	A
SNP	178	581	NC_000913	4101843	A
SNP	179	582	NC_000913	4114396	A
MOB	180	642,643	NC_000913	4123923	IS2	-1	5
MOB	181	644,645	NC_000913	4135180	IS2	-1	5
INS	182	584	NC_000913	4146389	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
INS	183	587,588	NC_000913	4296381	GC
MOB	184	627,628	NC_000913	4536236	IS5	1	4
DEL	185	590	NC_000913	4542683	1
RA	186	.	NC_000913	58065	0	C	A	bias_e_value=9.84804	bias_p_value=2.12167e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.5	fisher_strand_p_value=1.25616e-07	frequency=2.941e-01	ks_quality_p_value=1	major_base=C	major_cov=36/36	major_frequency=7.059e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.941e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=36/36	total_cov=66/36
RA	187	.	NC_000913	58594	0	G	T	bias_e_value=0.00018772	bias_p_value=4.04424e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.3	fisher_strand_p_value=1.43042e-12	frequency=2.867e-01	ks_quality_p_value=1	major_base=G	major_cov=60/47	major_frequency=7.133e-01	minor_base=T	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=2.867e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=60/47	total_cov=60/90
RA	188	.	NC_000913	71134	0	G	A	consensus_score=328.5	frequency=1	major_base=A	major_cov=51/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/42
RA	189	.	NC_000913	430299	0	C	A	bias_e_value=279.515	bias_p_value=6.02188e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.7	fisher_strand_p_value=4.52578e-06	frequency=2.376e-01	ks_quality_p_value=1	major_base=C	major_cov=41/36	major_frequency=7.624e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.376e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=41/36	total_cov=65/37
RA	190	.	NC_000913	557635	0	A	T	consensus_score=277.9	frequency=1	major_base=T	major_cov=48/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/27
RA	191	.	NC_000913	566323	0	C	T	bias_e_value=2936130	bias_p_value=0.632562	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.4	fisher_strand_p_value=0.276974	frequency=2.065e-01	ks_quality_p_value=1	major_base=C	major_cov=46/27	major_frequency=7.935e-01	minor_base=T	minor_cov=15/4	new_cov=15/4	polymorphism_frequency=2.065e-01	polymorphism_score=47.7	prediction=polymorphism	ref_cov=46/27	total_cov=62/31
RA	192	.	NC_000913	566326	0	T	C	bias_e_value=2922800	bias_p_value=0.629689	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.6	fisher_strand_p_value=0.276341	frequency=2.088e-01	ks_quality_p_value=0.994217	major_base=T	major_cov=45/27	major_frequency=7.912e-01	minor_base=C	minor_cov=15/4	new_cov=15/4	polymorphism_frequency=2.088e-01	polymorphism_score=48.9	prediction=polymorphism	ref_cov=45/27	total_cov=60/31
RA	193	.	NC_000913	566332	0	T	G	bias_e_value=2324100	bias_p_value=0.500706	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.4	fisher_strand_p_value=0.188219	frequency=2.111e-01	ks_quality_p_value=0.994071	major_base=T	major_cov=44/27	major_frequency=7.889e-01	minor_base=G	minor_cov=15/4	new_cov=15/4	polymorphism_frequency=2.111e-01	polymorphism_score=54.6	prediction=polymorphism	ref_cov=44/27	total_cov=59/31
RA	194	.	NC_000913	566435	0	G	A	bias_e_value=1159880	bias_p_value=0.249885	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.8	fisher_strand_p_value=0.069646	frequency=2.549e-01	ks_quality_p_value=0.971479	major_base=G	major_cov=43/33	major_frequency=7.451e-01	minor_base=A	minor_cov=9/17	new_cov=9/17	polymorphism_frequency=2.549e-01	polymorphism_score=72.5	prediction=polymorphism	ref_cov=43/33	total_cov=52/50
RA	195	.	NC_000913	566444	0	T	C	bias_e_value=662765	bias_p_value=0.142787	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.9	fisher_strand_p_value=0.0455458	frequency=2.692e-01	ks_quality_p_value=0.706688	major_base=T	major_cov=43/33	major_frequency=7.308e-01	minor_base=C	minor_cov=9/19	new_cov=9/19	polymorphism_frequency=2.692e-01	polymorphism_score=79.6	prediction=polymorphism	ref_cov=43/33	total_cov=52/52
RA	196	.	NC_000913	566451	0	T	C	bias_e_value=1464190	bias_p_value=0.315446	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.0	fisher_strand_p_value=0.0977336	frequency=2.832e-01	ks_quality_p_value=0.958279	major_base=T	major_cov=45/36	major_frequency=7.168e-01	minor_base=C	minor_cov=12/20	new_cov=12/20	polymorphism_frequency=2.832e-01	polymorphism_score=90.2	prediction=polymorphism	ref_cov=45/36	total_cov=57/56
RA	197	.	NC_000913	566463	0	T	C	bias_e_value=2646150	bias_p_value=0.570088	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.1	fisher_strand_p_value=0.231406	frequency=3.051e-01	ks_quality_p_value=1	major_base=T	major_cov=45/37	major_frequency=6.949e-01	minor_base=C	minor_cov=15/21	new_cov=15/21	polymorphism_frequency=3.051e-01	polymorphism_score=101.4	prediction=polymorphism	ref_cov=45/37	total_cov=60/58
RA	198	.	NC_000913	566468	0	C	T	bias_e_value=930414	bias_p_value=0.200449	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.8	fisher_strand_p_value=0.0502212	frequency=3.089e-01	ks_quality_p_value=1	major_base=C	major_cov=49/36	major_frequency=6.911e-01	minor_base=T	minor_cov=14/24	new_cov=14/24	polymorphism_frequency=3.089e-01	polymorphism_score=108.3	prediction=polymorphism	ref_cov=49/36	total_cov=63/60
RA	199	.	NC_000913	566492	0	G	T	bias_e_value=499985	bias_p_value=0.107717	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.4	fisher_strand_p_value=0.0224596	frequency=3.360e-01	ks_quality_p_value=1	major_base=G	major_cov=49/34	major_frequency=6.640e-01	minor_base=T	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=3.360e-01	polymorphism_score=111.4	prediction=polymorphism	ref_cov=49/34	total_cov=64/61
RA	200	.	NC_000913	566493	0	G	A	bias_e_value=396274	bias_p_value=0.0853736	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.1	fisher_strand_p_value=0.0224596	frequency=3.360e-01	ks_quality_p_value=0.747165	major_base=G	major_cov=49/34	major_frequency=6.640e-01	minor_base=A	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=3.360e-01	polymorphism_score=128.6	prediction=polymorphism	ref_cov=49/34	total_cov=64/61
RA	201	.	NC_000913	566498	0	C	T	bias_e_value=508930	bias_p_value=0.109644	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.7	fisher_strand_p_value=0.0230761	frequency=3.254e-01	ks_quality_p_value=0.995347	major_base=C	major_cov=50/35	major_frequency=6.746e-01	minor_base=T	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=3.254e-01	polymorphism_score=120.8	prediction=polymorphism	ref_cov=50/35	total_cov=65/61
RA	202	.	NC_000913	566510	0	G	C	bias_e_value=506924	bias_p_value=0.109212	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.4	fisher_strand_p_value=0.0230364	frequency=3.333e-01	ks_quality_p_value=0.992095	major_base=G	major_cov=49/35	major_frequency=6.667e-01	minor_base=C	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=3.333e-01	polymorphism_score=143.2	prediction=polymorphism	ref_cov=49/35	total_cov=64/62
RA	203	.	NC_000913	566513	0	C	T	bias_e_value=510115	bias_p_value=0.109899	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.1	fisher_strand_p_value=0.0230364	frequency=3.333e-01	ks_quality_p_value=1	major_base=C	major_cov=49/35	major_frequency=6.667e-01	minor_base=T	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=3.333e-01	polymorphism_score=124.6	prediction=polymorphism	ref_cov=49/35	total_cov=64/62
RA	204	.	NC_000913	566519	0	T	C	bias_e_value=756169	bias_p_value=0.162909	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.8	fisher_strand_p_value=0.0385011	frequency=3.333e-01	ks_quality_p_value=0.992095	major_base=T	major_cov=47/37	major_frequency=6.667e-01	minor_base=C	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=3.333e-01	polymorphism_score=122.6	prediction=polymorphism	ref_cov=47/37	total_cov=62/64
RA	205	.	NC_000913	566522	0	C	A	bias_e_value=1206490	bias_p_value=0.259927	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.6	fisher_strand_p_value=0.0895078	frequency=3.440e-01	ks_quality_p_value=0.797992	major_base=C	major_cov=45/37	major_frequency=6.560e-01	minor_base=A	minor_cov=16/27	new_cov=16/27	polymorphism_frequency=3.440e-01	polymorphism_score=124.4	prediction=polymorphism	ref_cov=45/37	total_cov=61/64
RA	206	.	NC_000913	566528	0	A	G	bias_e_value=1030000	bias_p_value=0.221904	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.1	fisher_strand_p_value=0.0575651	frequency=3.360e-01	ks_quality_p_value=1	major_base=A	major_cov=46/37	major_frequency=6.640e-01	minor_base=G	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=3.360e-01	polymorphism_score=113.2	prediction=polymorphism	ref_cov=46/37	total_cov=62/64
RA	207	.	NC_000913	566530	1	.	T	bias_e_value=1077980	bias_p_value=0.23224	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.0	fisher_strand_p_value=0.0612257	frequency=3.228e-01	ks_quality_p_value=1	major_base=.	major_cov=47/39	major_frequency=6.772e-01	minor_base=T	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=3.228e-01	polymorphism_score=223.2	prediction=polymorphism	ref_cov=47/39	total_cov=62/65
RA	208	.	NC_000913	566532	0	A	T	bias_e_value=793817	bias_p_value=0.17102	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.0	fisher_strand_p_value=0.0407057	frequency=3.307e-01	ks_quality_p_value=1	major_base=A	major_cov=47/38	major_frequency=6.693e-01	minor_base=T	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=3.307e-01	polymorphism_score=166.3	prediction=polymorphism	ref_cov=47/38	total_cov=62/65
RA	209	.	NC_000913	566535	0	T	.	bias_e_value=743096	bias_p_value=0.160093	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.8	fisher_strand_p_value=0.0398879	frequency=3.231e-01	ks_quality_p_value=0.936052	major_base=T	major_cov=49/39	major_frequency=6.769e-01	minor_base=.	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=3.231e-01	polymorphism_score=191.2	prediction=polymorphism	ref_cov=49/39	total_cov=65/66
RA	210	.	NC_000913	566536	0	G	A	bias_e_value=650830	bias_p_value=0.140215	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.9	fisher_strand_p_value=0.0405548	frequency=3.182e-01	ks_quality_p_value=0.775269	major_base=G	major_cov=50/40	major_frequency=6.818e-01	minor_base=A	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=3.182e-01	polymorphism_score=127.4	prediction=polymorphism	ref_cov=50/40	total_cov=65/67
RA	211	.	NC_000913	566543	0	A	T	bias_e_value=1172960	bias_p_value=0.252703	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.5	fisher_strand_p_value=0.068709	frequency=3.285e-01	ks_quality_p_value=1	major_base=A	major_cov=53/39	major_frequency=6.715e-01	minor_base=T	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.285e-01	polymorphism_score=182.1	prediction=polymorphism	ref_cov=53/39	total_cov=71/66
RA	212	.	NC_000913	566547	0	C	A	bias_e_value=883858	bias_p_value=0.190419	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.2	fisher_strand_p_value=0.0469071	frequency=3.358e-01	ks_quality_p_value=0.999966	major_base=C	major_cov=52/37	major_frequency=6.642e-01	minor_base=A	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=3.358e-01	polymorphism_score=127.6	prediction=polymorphism	ref_cov=52/37	total_cov=70/64
RA	213	.	NC_000913	566565	0	A	G	bias_e_value=1029490	bias_p_value=0.221793	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.8	fisher_strand_p_value=0.0575263	frequency=3.803e-01	ks_quality_p_value=1	major_base=A	major_cov=51/37	major_frequency=6.197e-01	minor_base=G	minor_cov=22/32	new_cov=22/32	polymorphism_frequency=3.803e-01	polymorphism_score=163.7	prediction=polymorphism	ref_cov=51/37	total_cov=73/69
RA	214	.	NC_000913	566570	0	A	C	bias_e_value=978863	bias_p_value=0.210887	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.4	fisher_strand_p_value=0.057191	frequency=3.776e-01	ks_quality_p_value=0.939853	major_base=A	major_cov=52/37	major_frequency=6.224e-01	minor_base=C	minor_cov=22/32	new_cov=22/32	polymorphism_frequency=3.776e-01	polymorphism_score=175.9	prediction=polymorphism	ref_cov=52/37	total_cov=74/69
RA	215	.	NC_000913	566597	0	T	C	bias_e_value=1342620	bias_p_value=0.289254	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.3	fisher_strand_p_value=0.0893925	frequency=3.931e-01	ks_quality_p_value=0.927026	major_base=T	major_cov=49/39	major_frequency=6.069e-01	minor_base=C	minor_cov=23/34	new_cov=23/34	polymorphism_frequency=3.931e-01	polymorphism_score=175.7	prediction=polymorphism	ref_cov=49/39	total_cov=72/73
RA	216	.	NC_000913	566651	0	T	C	bias_e_value=2682660	bias_p_value=0.577953	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.2	fisher_strand_p_value=0.357598	frequency=4.503e-01	ks_quality_p_value=0.662261	major_base=T	major_cov=50/44	major_frequency=5.497e-01	minor_base=C	minor_cov=35/42	new_cov=35/42	polymorphism_frequency=4.503e-01	polymorphism_score=248.8	prediction=polymorphism	ref_cov=50/44	total_cov=85/86
RA	217	.	NC_000913	566728	0	G	T	bias_e_value=4040740	bias_p_value=0.870539	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.4	fisher_strand_p_value=0.732385	frequency=3.673e-01	ks_quality_p_value=0.732465	major_base=G	major_cov=46/47	major_frequency=6.327e-01	minor_base=T	minor_cov=29/25	new_cov=29/25	polymorphism_frequency=3.673e-01	polymorphism_score=160.9	prediction=polymorphism	ref_cov=46/47	total_cov=75/72
RA	218	.	NC_000913	566740	0	A	G	bias_e_value=3120840	bias_p_value=0.672355	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.7	fisher_strand_p_value=1	frequency=3.356e-01	ks_quality_p_value=0.309393	major_base=A	major_cov=50/47	major_frequency=6.644e-01	minor_base=G	minor_cov=26/23	new_cov=26/23	polymorphism_frequency=3.356e-01	polymorphism_score=149.6	prediction=polymorphism	ref_cov=50/47	total_cov=76/70
RA	219	.	NC_000913	566742	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.5	fisher_strand_p_value=1	frequency=3.356e-01	ks_quality_p_value=1	major_base=A	major_cov=50/47	major_frequency=6.644e-01	minor_base=C	minor_cov=26/23	new_cov=26/23	polymorphism_frequency=3.356e-01	polymorphism_score=148.4	prediction=polymorphism	ref_cov=50/47	total_cov=76/70
RA	220	.	NC_000913	566756	0	G	C	bias_e_value=4081020	bias_p_value=0.879218	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.0	fisher_strand_p_value=0.856212	frequency=3.261e-01	ks_quality_p_value=0.643162	major_base=G	major_cov=47/46	major_frequency=6.739e-01	minor_base=C	minor_cov=24/21	new_cov=24/21	polymorphism_frequency=3.261e-01	polymorphism_score=160.4	prediction=polymorphism	ref_cov=47/46	total_cov=71/67
RA	221	.	NC_000913	566770	0	C	A	bias_e_value=2941570	bias_p_value=0.633734	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.1	fisher_strand_p_value=0.35514	frequency=3.134e-01	ks_quality_p_value=0.782473	major_base=C	major_cov=44/48	major_frequency=6.866e-01	minor_base=A	minor_cov=24/18	new_cov=24/18	polymorphism_frequency=3.134e-01	polymorphism_score=116.0	prediction=polymorphism	ref_cov=44/48	total_cov=68/66
RA	222	.	NC_000913	568052	0	T	C	bias_e_value=4640970	bias_p_value=0.999853	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.6	fisher_strand_p_value=1	frequency=2.889e-01	ks_quality_p_value=0.982911	major_base=T	major_cov=57/39	major_frequency=7.111e-01	minor_base=C	minor_cov=23/16	new_cov=23/16	polymorphism_frequency=2.889e-01	polymorphism_score=108.1	prediction=polymorphism	ref_cov=57/39	total_cov=80/55
RA	223	.	NC_000913	568067	0	G	A	bias_e_value=4403130	bias_p_value=0.948612	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.6	fisher_strand_p_value=0.697045	frequency=2.891e-01	ks_quality_p_value=1	major_base=G	major_cov=53/38	major_frequency=7.109e-01	minor_base=A	minor_cov=20/17	new_cov=20/17	polymorphism_frequency=2.891e-01	polymorphism_score=104.7	prediction=polymorphism	ref_cov=53/38	total_cov=73/56
RA	224	.	NC_000913	568076	0	A	T	bias_e_value=4636580	bias_p_value=0.998908	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.6	fisher_strand_p_value=1	frequency=2.537e-01	ks_quality_p_value=0.953629	major_base=A	major_cov=54/46	major_frequency=7.463e-01	minor_base=T	minor_cov=19/15	new_cov=19/15	polymorphism_frequency=2.537e-01	polymorphism_score=135.3	prediction=polymorphism	ref_cov=54/46	total_cov=73/61
RA	225	.	NC_000913	568077	0	A	C	bias_e_value=4509970	bias_p_value=0.97163	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.7	fisher_strand_p_value=1	frequency=2.556e-01	ks_quality_p_value=0.771455	major_base=A	major_cov=54/45	major_frequency=7.444e-01	minor_base=C	minor_cov=19/15	new_cov=19/15	polymorphism_frequency=2.556e-01	polymorphism_score=104.5	prediction=polymorphism	ref_cov=54/45	total_cov=73/61
RA	226	.	NC_000913	568079	0	C	T	bias_e_value=4636580	bias_p_value=0.998908	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.3	fisher_strand_p_value=1	frequency=2.537e-01	ks_quality_p_value=0.953629	major_base=C	major_cov=54/46	major_frequency=7.463e-01	minor_base=T	minor_cov=19/15	new_cov=19/15	polymorphism_frequency=2.537e-01	polymorphism_score=97.7	prediction=polymorphism	ref_cov=54/46	total_cov=73/61
RA	227	.	NC_000913	568085	0	C	T	bias_e_value=4220630	bias_p_value=0.909294	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.6	fisher_strand_p_value=1	frequency=2.519e-01	ks_quality_p_value=0.605528	major_base=C	major_cov=55/46	major_frequency=7.481e-01	minor_base=T	minor_cov=19/15	new_cov=19/15	polymorphism_frequency=2.519e-01	polymorphism_score=97.5	prediction=polymorphism	ref_cov=55/46	total_cov=74/61
RA	228	.	NC_000913	568086	0	G	A	bias_e_value=4351010	bias_p_value=0.937383	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.4	fisher_strand_p_value=1	frequency=2.519e-01	ks_quality_p_value=0.667671	major_base=G	major_cov=55/46	major_frequency=7.481e-01	minor_base=A	minor_cov=19/15	new_cov=19/15	polymorphism_frequency=2.519e-01	polymorphism_score=98.5	prediction=polymorphism	ref_cov=55/46	total_cov=74/61
RA	229	.	NC_000913	568088	0	T	C	bias_e_value=4614730	bias_p_value=0.994199	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.0	fisher_strand_p_value=1	frequency=2.406e-01	ks_quality_p_value=0.89424	major_base=T	major_cov=55/46	major_frequency=7.594e-01	minor_base=C	minor_cov=17/15	new_cov=17/15	polymorphism_frequency=2.406e-01	polymorphism_score=91.3	prediction=polymorphism	ref_cov=55/46	total_cov=74/61
RA	230	.	NC_000913	568091	0	T	A	bias_e_value=4640570	bias_p_value=0.999767	consensus_reject=FREQUENCY_CUTOFF	consensus_score=324.1	fisher_strand_p_value=1	frequency=2.519e-01	ks_quality_p_value=0.978487	major_base=T	major_cov=56/45	major_frequency=7.481e-01	minor_base=A	minor_cov=19/15	new_cov=19/15	polymorphism_frequency=2.519e-01	polymorphism_score=131.8	prediction=polymorphism	ref_cov=56/45	total_cov=75/61
RA	231	.	NC_000913	578331	0	G	T	bias_e_value=4392190	bias_p_value=0.946255	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.0	fisher_strand_p_value=0.696471	frequency=3.388e-01	ks_quality_p_value=0.991565	major_base=G	major_cov=33/47	major_frequency=6.612e-01	minor_base=T	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=3.388e-01	polymorphism_score=110.3	prediction=polymorphism	ref_cov=33/47	total_cov=48/73
RA	232	.	NC_000913	578427	0	G	C	bias_e_value=4570820	bias_p_value=0.984741	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.1	fisher_strand_p_value=0.858065	frequency=4.524e-01	ks_quality_p_value=0.967838	major_base=G	major_cov=37/32	major_frequency=5.476e-01	minor_base=C	minor_cov=29/28	new_cov=29/28	polymorphism_frequency=4.524e-01	polymorphism_score=207.0	prediction=polymorphism	ref_cov=37/32	total_cov=66/60
RA	233	.	NC_000913	578571	0	C	T	bias_e_value=3520350	bias_p_value=0.758426	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.7	fisher_strand_p_value=0.444559	frequency=4.569e-01	ks_quality_p_value=0.880142	major_base=C	major_cov=70/37	major_frequency=5.431e-01	minor_base=T	minor_cov=64/26	new_cov=64/26	polymorphism_frequency=4.569e-01	polymorphism_score=285.1	prediction=polymorphism	ref_cov=70/37	total_cov=134/63
RA	234	.	NC_000913	578574	0	A	C	bias_e_value=3552610	bias_p_value=0.765376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.2	fisher_strand_p_value=0.541266	frequency=4.500e-01	ks_quality_p_value=0.736714	major_base=A	major_cov=73/37	major_frequency=5.500e-01	minor_base=C	minor_cov=64/26	new_cov=64/26	polymorphism_frequency=4.500e-01	polymorphism_score=290.6	prediction=polymorphism	ref_cov=73/37	total_cov=137/63
RA	235	.	NC_000913	578605	0	T	G	bias_e_value=4399460	bias_p_value=0.947822	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.9	fisher_strand_p_value=0.881312	frequency=4.527e-01	ks_quality_p_value=0.788444	major_base=T	major_cov=72/38	major_frequency=5.473e-01	minor_base=G	minor_cov=61/30	new_cov=61/30	polymorphism_frequency=4.527e-01	polymorphism_score=310.2	prediction=polymorphism	ref_cov=72/38	total_cov=134/68
RA	236	.	NC_000913	578729	0	A	G	bias_e_value=4634030	bias_p_value=0.998357	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.8	fisher_strand_p_value=1	frequency=4.286e-01	ks_quality_p_value=0.943233	major_base=A	major_cov=80/52	major_frequency=5.714e-01	minor_base=G	minor_cov=60/39	new_cov=60/39	polymorphism_frequency=4.286e-01	polymorphism_score=294.9	prediction=polymorphism	ref_cov=80/52	total_cov=141/91
RA	237	.	NC_000913	578809	0	T	C	bias_e_value=3596240	bias_p_value=0.774776	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.5	fisher_strand_p_value=0.424293	frequency=4.622e-01	ks_quality_p_value=0.964256	major_base=T	major_cov=65/56	major_frequency=5.378e-01	minor_base=C	minor_cov=50/54	new_cov=50/54	polymorphism_frequency=4.622e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=65/56	total_cov=115/110
RA	238	.	NC_000913	578811	0	T	G	bias_e_value=3939260	bias_p_value=0.848677	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.2	fisher_strand_p_value=0.503048	frequency=4.643e-01	ks_quality_p_value=1	major_base=T	major_cov=64/56	major_frequency=5.357e-01	minor_base=G	minor_cov=50/54	new_cov=50/54	polymorphism_frequency=4.643e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=64/56	total_cov=114/110
RA	239	.	NC_000913	578831	0	T	C	bias_e_value=4523100	bias_p_value=0.974459	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.3	fisher_strand_p_value=0.796293	frequency=4.467e-01	ks_quality_p_value=0.982893	major_base=T	major_cov=64/71	major_frequency=5.533e-01	minor_base=C	minor_cov=49/60	new_cov=49/60	polymorphism_frequency=4.467e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=64/71	total_cov=114/132
RA	240	.	NC_000913	579004	0	C	T	bias_e_value=4379680	bias_p_value=0.94356	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.7	fisher_strand_p_value=0.683419	frequency=4.831e-01	ks_quality_p_value=1	major_base=C	major_cov=44/78	major_frequency=5.169e-01	minor_base=T	minor_cov=38/76	new_cov=38/76	polymorphism_frequency=4.831e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=44/78	total_cov=82/154
RA	241	.	NC_000913	579099	0	A	.	bias_e_value=4097160	bias_p_value=0.882695	consensus_reject=FREQUENCY_CUTOFF	consensus_score=411.8	fisher_strand_p_value=0.58526	frequency=4.706e-01	ks_quality_p_value=0.950966	major_base=A	major_cov=51/66	major_frequency=5.294e-01	minor_base=.	minor_cov=41/63	new_cov=41/63	polymorphism_frequency=4.706e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=51/66	total_cov=92/129
RA	242	.	NC_000913	579127	0	T	C	bias_e_value=4130600	bias_p_value=0.889898	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.5	fisher_strand_p_value=0.569095	frequency=5.076e-01	ks_quality_p_value=1	major_base=C	major_cov=50/50	major_frequency=5.076e-01	minor_base=T	minor_cov=53/44	new_cov=50/50	polymorphism_frequency=5.076e-01	polymorphism_score=314.3	prediction=polymorphism	ref_cov=53/44	total_cov=103/94
RA	243	.	NC_000913	579134	0	T	C	bias_e_value=4130600	bias_p_value=0.889898	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.0	fisher_strand_p_value=0.569095	frequency=5.076e-01	ks_quality_p_value=1	major_base=C	major_cov=50/50	major_frequency=5.076e-01	minor_base=T	minor_cov=53/44	new_cov=50/50	polymorphism_frequency=5.076e-01	polymorphism_score=313.7	prediction=polymorphism	ref_cov=53/44	total_cov=103/94
RA	244	.	NC_000913	579146	0	A	G	bias_e_value=4638530	bias_p_value=0.999327	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.8	fisher_strand_p_value=1	frequency=5.024e-01	ks_quality_p_value=0.963537	major_base=G	major_cov=58/45	major_frequency=5.024e-01	minor_base=A	minor_cov=57/45	new_cov=58/45	polymorphism_frequency=5.024e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=57/45	total_cov=116/90
RA	245	.	NC_000913	579271	0	G	A	bias_e_value=4641530	bias_p_value=0.999973	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.6	fisher_strand_p_value=1	frequency=4.612e-01	ks_quality_p_value=0.992648	major_base=G	major_cov=79/46	major_frequency=5.388e-01	minor_base=A	minor_cov=68/39	new_cov=68/39	polymorphism_frequency=4.612e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=79/46	total_cov=148/86
RA	246	.	NC_000913	579285	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.6	fisher_strand_p_value=1	frequency=4.557e-01	ks_quality_p_value=1	major_base=T	major_cov=84/45	major_frequency=5.443e-01	minor_base=C	minor_cov=71/37	new_cov=71/37	polymorphism_frequency=4.557e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=84/45	total_cov=156/82
RA	247	.	NC_000913	579385	0	A	G	bias_e_value=3114060	bias_p_value=0.670895	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.3	fisher_strand_p_value=0.326756	frequency=4.502e-01	ks_quality_p_value=0.94306	major_base=A	major_cov=80/69	major_frequency=5.498e-01	minor_base=G	minor_cov=73/49	new_cov=73/49	polymorphism_frequency=4.502e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=80/69	total_cov=153/118
RA	248	.	NC_000913	579457	0	A	G	bias_e_value=4260390	bias_p_value=0.917861	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.5	fisher_strand_p_value=0.623109	frequency=4.532e-01	ks_quality_p_value=1	major_base=A	major_cov=74/72	major_frequency=5.468e-01	minor_base=G	minor_cov=57/64	new_cov=57/64	polymorphism_frequency=4.532e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=74/72	total_cov=132/136
RA	249	.	NC_000913	579502	0	A	G	bias_e_value=4557300	bias_p_value=0.981827	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.1	fisher_strand_p_value=0.815515	frequency=4.444e-01	ks_quality_p_value=1	major_base=A	major_cov=82/83	major_frequency=5.556e-01	minor_base=G	minor_cov=68/64	new_cov=68/64	polymorphism_frequency=4.444e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=82/83	total_cov=150/148
RA	250	.	NC_000913	579540	0	T	C	bias_e_value=4424960	bias_p_value=0.953316	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.3	fisher_strand_p_value=0.907158	frequency=4.545e-01	ks_quality_p_value=0.783139	major_base=T	major_cov=76/86	major_frequency=5.455e-01	minor_base=C	minor_cov=65/70	new_cov=65/70	polymorphism_frequency=4.545e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=76/86	total_cov=141/157
RA	251	.	NC_000913	579651	0	C	T	bias_e_value=4611240	bias_p_value=0.993449	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.3	fisher_strand_p_value=0.906705	frequency=4.692e-01	ks_quality_p_value=0.979083	major_base=C	major_cov=74/81	major_frequency=5.308e-01	minor_base=T	minor_cov=64/73	new_cov=64/73	polymorphism_frequency=4.692e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=74/81	total_cov=138/154
RA	252	.	NC_000913	579671	0	T	C	bias_e_value=4065640	bias_p_value=0.875904	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.6	fisher_strand_p_value=0.545175	frequency=4.764e-01	ks_quality_p_value=1	major_base=T	major_cov=70/74	major_frequency=5.236e-01	minor_base=C	minor_cov=58/73	new_cov=58/73	polymorphism_frequency=4.764e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=70/74	total_cov=129/147
RA	253	.	NC_000913	579717	0	A	C	bias_e_value=4094410	bias_p_value=0.882102	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.2	fisher_strand_p_value=0.555553	frequency=4.608e-01	ks_quality_p_value=1	major_base=A	major_cov=73/85	major_frequency=5.392e-01	minor_base=C	minor_cov=57/78	new_cov=57/78	polymorphism_frequency=4.608e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=73/85	total_cov=130/163
RA	254	.	NC_000913	579811	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.1	fisher_strand_p_value=1	frequency=4.576e-01	ks_quality_p_value=1	major_base=C	major_cov=56/72	major_frequency=5.424e-01	minor_base=T	minor_cov=47/61	new_cov=47/61	polymorphism_frequency=4.576e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=56/72	total_cov=103/133
RA	255	.	NC_000913	580020	0	G	A	bias_e_value=4273590	bias_p_value=0.920705	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.4	fisher_strand_p_value=0.675722	frequency=4.519e-01	ks_quality_p_value=0.93113	major_base=G	major_cov=59/55	major_frequency=5.481e-01	minor_base=A	minor_cov=52/42	new_cov=52/42	polymorphism_frequency=4.519e-01	polymorphism_score=296.1	prediction=polymorphism	ref_cov=59/55	total_cov=111/98
RA	256	.	NC_000913	580115	0	C	T	bias_e_value=3810660	bias_p_value=0.82097	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.8	fisher_strand_p_value=0.889832	frequency=4.858e-01	ks_quality_p_value=0.52244	major_base=C	major_cov=63/46	major_frequency=5.142e-01	minor_base=T	minor_cov=58/45	new_cov=58/45	polymorphism_frequency=4.858e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=63/46	total_cov=121/91
RA	257	.	NC_000913	580119	0	A	G	bias_e_value=4612510	bias_p_value=0.993721	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.8	fisher_strand_p_value=0.890054	frequency=4.791e-01	ks_quality_p_value=1	major_base=A	major_cov=66/46	major_frequency=5.209e-01	minor_base=G	minor_cov=59/44	new_cov=59/44	polymorphism_frequency=4.791e-01	polymorphism_score=315.3	prediction=polymorphism	ref_cov=66/46	total_cov=125/91
RA	258	.	NC_000913	580120	0	C	T	bias_e_value=4144790	bias_p_value=0.892956	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.8	fisher_strand_p_value=0.677466	frequency=4.791e-01	ks_quality_p_value=0.84811	major_base=C	major_cov=68/44	major_frequency=5.209e-01	minor_base=T	minor_cov=59/44	new_cov=59/44	polymorphism_frequency=4.791e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=68/44	total_cov=128/88
RA	259	.	NC_000913	580302	0	C	T	bias_e_value=4188740	bias_p_value=0.902425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.0	fisher_strand_p_value=0.596566	frequency=4.231e-01	ks_quality_p_value=0.992569	major_base=C	major_cov=68/67	major_frequency=5.769e-01	minor_base=T	minor_cov=54/45	new_cov=54/45	polymorphism_frequency=4.231e-01	polymorphism_score=311.0	prediction=polymorphism	ref_cov=68/67	total_cov=123/112
RA	260	.	NC_000913	580437	0	A	C	bias_e_value=4467110	bias_p_value=0.962396	consensus_reject=FREQUENCY_CUTOFF	consensus_score=326.5	fisher_strand_p_value=0.738605	frequency=2.540e-01	ks_quality_p_value=1	major_base=A	major_cov=73/68	major_frequency=7.460e-01	minor_base=C	minor_cov=23/25	new_cov=23/25	polymorphism_frequency=2.540e-01	polymorphism_score=131.5	prediction=polymorphism	ref_cov=73/68	total_cov=96/93
RA	261	.	NC_000913	580830	0	T	A	bias_e_value=4053700	bias_p_value=0.873332	consensus_reject=FREQUENCY_CUTOFF	consensus_score=397.5	fisher_strand_p_value=0.540962	frequency=2.276e-01	ks_quality_p_value=1	major_base=T	major_cov=40/72	major_frequency=7.724e-01	minor_base=A	minor_cov=14/19	new_cov=14/19	polymorphism_frequency=2.276e-01	polymorphism_score=125.0	prediction=polymorphism	ref_cov=40/72	total_cov=54/91
RA	262	.	NC_000913	580831	0	G	A	bias_e_value=4051400	bias_p_value=0.872836	consensus_reject=FREQUENCY_CUTOFF	consensus_score=335.2	fisher_strand_p_value=0.540962	frequency=2.276e-01	ks_quality_p_value=0.998508	major_base=G	major_cov=40/72	major_frequency=7.724e-01	minor_base=A	minor_cov=14/19	new_cov=14/19	polymorphism_frequency=2.276e-01	polymorphism_score=90.5	prediction=polymorphism	ref_cov=40/72	total_cov=54/91
RA	263	.	NC_000913	581042	0	T	G	bias_e_value=4222350	bias_p_value=0.909666	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.3	fisher_strand_p_value=0.607716	frequency=4.000e-01	ks_quality_p_value=0.997622	major_base=T	major_cov=38/46	major_frequency=6.000e-01	minor_base=G	minor_cov=28/28	new_cov=28/28	polymorphism_frequency=4.000e-01	polymorphism_score=179.4	prediction=polymorphism	ref_cov=38/46	total_cov=66/74
RA	264	.	NC_000913	581056	0	A	G	bias_e_value=3839250	bias_p_value=0.82713	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.8	fisher_strand_p_value=0.484756	frequency=3.750e-01	ks_quality_p_value=0.975788	major_base=A	major_cov=38/47	major_frequency=6.250e-01	minor_base=G	minor_cov=26/25	new_cov=26/25	polymorphism_frequency=3.750e-01	polymorphism_score=155.9	prediction=polymorphism	ref_cov=38/47	total_cov=64/72
RA	265	.	NC_000913	581073	0	G	A	bias_e_value=3595300	bias_p_value=0.774573	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.2	fisher_strand_p_value=0.708828	frequency=3.689e-01	ks_quality_p_value=0.576867	major_base=G	major_cov=36/41	major_frequency=6.311e-01	minor_base=A	minor_cov=23/22	new_cov=23/22	polymorphism_frequency=3.689e-01	polymorphism_score=138.0	prediction=polymorphism	ref_cov=36/41	total_cov=59/63
RA	266	.	NC_000913	581118	0	T	C	bias_e_value=4587470	bias_p_value=0.988328	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.7	fisher_strand_p_value=0.851153	frequency=4.017e-01	ks_quality_p_value=1	major_base=T	major_cov=37/33	major_frequency=5.983e-01	minor_base=C	minor_cov=26/21	new_cov=26/21	polymorphism_frequency=4.017e-01	polymorphism_score=135.7	prediction=polymorphism	ref_cov=37/33	total_cov=63/54
RA	267	.	NC_000913	581127	0	G	A	bias_e_value=4550490	bias_p_value=0.98036	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.3	fisher_strand_p_value=0.849938	frequency=4.052e-01	ks_quality_p_value=0.951208	major_base=G	major_cov=36/33	major_frequency=5.948e-01	minor_base=A	minor_cov=26/21	new_cov=26/21	polymorphism_frequency=4.052e-01	polymorphism_score=146.1	prediction=polymorphism	ref_cov=36/33	total_cov=62/54
RA	268	.	NC_000913	581133	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.8	fisher_strand_p_value=1	frequency=4.167e-01	ks_quality_p_value=1	major_base=A	major_cov=34/36	major_frequency=5.833e-01	minor_base=G	minor_cov=25/25	new_cov=25/25	polymorphism_frequency=4.167e-01	polymorphism_score=148.1	prediction=polymorphism	ref_cov=34/36	total_cov=59/61
RA	269	.	NC_000913	581227	0	A	C	bias_e_value=3935040	bias_p_value=0.847767	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.2	fisher_strand_p_value=0.559558	frequency=4.000e-01	ks_quality_p_value=0.896649	major_base=A	major_cov=31/35	major_frequency=6.000e-01	minor_base=C	minor_cov=24/20	new_cov=24/20	polymorphism_frequency=4.000e-01	polymorphism_score=144.3	prediction=polymorphism	ref_cov=31/35	total_cov=55/55
RA	270	.	NC_000913	631633	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=219.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/29	major_frequency=9.841e-01	minor_base=C	minor_cov=1/0	new_cov=33/29	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	271	.	NC_000913	807343	0	C	G	bias_e_value=613440	bias_p_value=0.13216	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.0	fisher_strand_p_value=0.0291375	frequency=5.385e-01	ks_quality_p_value=1	major_base=G	major_cov=6/1	major_frequency=5.385e-01	minor_base=C	minor_cov=1/5	new_cov=6/1	polymorphism_frequency=5.385e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=1/5	total_cov=7/6
RA	272	.	NC_000913	828005	0	C	T	consensus_score=219.3	frequency=1	major_base=T	major_cov=22/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/43
RA	273	.	NC_000913	833233	0	C	T	bias_e_value=3865890	bias_p_value=0.832869	consensus_score=363.6	fisher_strand_p_value=0.480769	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/49	major_frequency=9.904e-01	minor_base=G	minor_cov=0/1	new_cov=54/49	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	274	.	NC_000913	834674	0	C	A	bias_e_value=0.00300138	bias_p_value=6.46619e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.6	fisher_strand_p_value=2.54637e-11	frequency=3.375e-01	ks_quality_p_value=1	major_base=C	major_cov=14/39	major_frequency=6.625e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.375e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=14/39	total_cov=41/39
RA	275	.	NC_000913	834701	0	A	G	consensus_score=306.2	frequency=1	major_base=G	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	276	.	NC_000913	844834	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=239.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/21	major_frequency=9.848e-01	minor_base=C	minor_cov=1/0	new_cov=44/21	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/21
RA	277	.	NC_000913	847955	0	G	A	bias_e_value=0.00058633	bias_p_value=1.26319e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.1	fisher_strand_p_value=4.6627e-12	frequency=2.705e-01	ks_quality_p_value=1	major_base=G	major_cov=58/31	major_frequency=7.295e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.705e-01	polymorphism_score=35.6	prediction=polymorphism	ref_cov=58/31	total_cov=58/64
RA	278	.	NC_000913	848028	0	G	T	bias_e_value=0.214846	bias_p_value=4.62866e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.2	fisher_strand_p_value=2.21154e-09	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=52/44	major_frequency=7.500e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.500e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=52/44	total_cov=52/76
RA	279	.	NC_000913	953383	0	C	T	consensus_score=319.0	frequency=1	major_base=T	major_cov=34/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/58
RA	280	.	NC_000913	961088	0	C	T	consensus_score=289.4	frequency=1	major_base=T	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	281	.	NC_000913	973776	0	C	T	consensus_score=318.9	frequency=1	major_base=T	major_cov=40/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/46
RA	282	.	NC_000913	987152	0	G	T	consensus_score=436.8	frequency=1	major_base=T	major_cov=79/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/34
RA	283	.	NC_000913	1001094	0	G	T	bias_e_value=170.24	bias_p_value=3.66766e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.5	fisher_strand_p_value=2.64985e-06	frequency=2.444e-01	ks_quality_p_value=1	major_base=G	major_cov=35/33	major_frequency=7.556e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.444e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=35/33	total_cov=35/55
RA	284	.	NC_000913	1051393	0	C	T	bias_e_value=4634920	bias_p_value=0.998549	consensus_score=398.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.946608	major_base=T	major_cov=50/60	major_frequency=9.821e-01	minor_base=.	minor_cov=1/1	new_cov=50/60	polymorphism_frequency=9.821e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=0/0	total_cov=51/62
RA	285	.	NC_000913	1075684	0	C	T	consensus_score=202.2	frequency=1	major_base=T	major_cov=37/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/21
RA	286	.	NC_000913	1087580	0	G	A	bias_e_value=4.66978	bias_p_value=1.00606e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.3	fisher_strand_p_value=5.68973e-08	frequency=3.182e-01	ks_quality_p_value=1	major_base=G	major_cov=27/33	major_frequency=6.818e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.182e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=27/33	total_cov=55/33
RA	287	.	NC_000913	1164173	0	G	A	bias_e_value=3789620	bias_p_value=0.816438	consensus_score=204.9	fisher_strand_p_value=0.459016	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/33	major_frequency=9.836e-01	minor_base=C	minor_cov=1/0	new_cov=27/33	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	288	.	NC_000913	1184738	0	G	A	consensus_score=283.7	frequency=1	major_base=A	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	289	.	NC_000913	1188675	0	G	A	bias_e_value=3785330	bias_p_value=0.815514	consensus_score=289.6	fisher_strand_p_value=0.457831	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=37/45	major_frequency=9.880e-01	minor_base=C	minor_cov=1/0	new_cov=37/45	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	290	.	NC_000913	1190060	0	G	A	consensus_score=262.3	frequency=1	major_base=A	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	291	.	NC_000913	1196220	0	C	T	consensus_score=145.8	frequency=1	major_base=T	major_cov=24/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/25
RA	292	.	NC_000913	1196232	0	C	T	consensus_score=131.3	frequency=1	major_base=T	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	293	.	NC_000913	1196245	0	T	C	bias_e_value=3816980	bias_p_value=0.822332	consensus_score=129.1	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=24/20	major_frequency=9.778e-01	minor_base=T	minor_cov=0/1	new_cov=24/20	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=24/21
RA	294	.	NC_000913	1196247	0	A	G	consensus_score=134.5	frequency=1	major_base=G	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	295	.	NC_000913	1196277	0	C	T	consensus_score=93.7	frequency=1	major_base=T	major_cov=21/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/14
RA	296	.	NC_000913	1196280	0	G	C	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=91.3	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=21/13	major_frequency=9.714e-01	minor_base=T	minor_cov=0/1	new_cov=21/13	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/14
RA	297	.	NC_000913	1196283	0	A	G	consensus_score=95.5	frequency=1	major_base=G	major_cov=21/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/14
RA	298	.	NC_000913	1196292	0	C	T	consensus_score=83.7	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	299	.	NC_000913	1196304	0	G	A	consensus_score=82.1	frequency=1	major_base=A	major_cov=21/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	300	.	NC_000913	1196316	0	T	A	consensus_score=68.6	frequency=1	major_base=A	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	301	.	NC_000913	1196325	0	A	G	consensus_score=48.6	frequency=1	major_base=G	major_cov=17/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/5
RA	302	.	NC_000913	1196352	0	C	A	consensus_score=33.4	deleted=1	frequency=1	major_base=A	major_cov=15/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/2
RA	303	.	NC_000913	1214349	0	G	A	bias_e_value=3697310	bias_p_value=0.796551	consensus_score=357.9	fisher_strand_p_value=0.434343	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/56	major_frequency=9.899e-01	minor_base=C	minor_cov=1/0	new_cov=42/56	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	304	.	NC_000913	1222374	0	G	A	consensus_score=292.3	frequency=1	major_base=A	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	305	.	NC_000913	1224022	0	G	A	consensus_score=291.1	frequency=1	major_base=A	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	306	.	NC_000913	1237210	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=293.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/41	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=43/41	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/42
RA	307	.	NC_000913	1290881	0	C	T	consensus_score=374.0	frequency=1	major_base=T	major_cov=50/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/50
RA	308	.	NC_000913	1297640	0	C	T	consensus_score=232.7	frequency=1	major_base=T	major_cov=35/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/28
RA	309	.	NC_000913	1334966	0	A	C	bias_e_value=13.5037	bias_p_value=2.90925e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.1	fisher_strand_p_value=1.7574e-07	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=37/31	major_frequency=6.667e-01	minor_base=C	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.333e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=37/31	total_cov=71/31
RA	310	.	NC_000913	1337394	0	A	G	bias_e_value=3447870	bias_p_value=0.742811	consensus_score=227.5	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=40/23	major_frequency=9.844e-01	minor_base=C	minor_cov=0/1	new_cov=40/23	polymorphism_frequency=9.844e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=40/24
RA	311	.	NC_000913	1353758	0	T	A	consensus_score=253.1	frequency=1	major_base=A	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	312	.	NC_000913	1423225	0	G	A	bias_e_value=4638440	bias_p_value=0.999309	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.5	fisher_strand_p_value=1	frequency=3.200e-01	ks_quality_p_value=0.963053	major_base=G	major_cov=9/8	major_frequency=6.800e-01	minor_base=A	minor_cov=5/3	new_cov=5/3	polymorphism_frequency=3.200e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=9/8	total_cov=14/11
RA	313	.	NC_000913	1423244	0	G	C	bias_e_value=4484690	bias_p_value=0.966185	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.2	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.751477	major_base=G	major_cov=8/6	major_frequency=5.000e-01	minor_base=C	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=5.000e-01	polymorphism_score=48.6	prediction=polymorphism	ref_cov=8/6	total_cov=17/12
RA	314	.	NC_000913	1423272	0	C	T	bias_e_value=4482590	bias_p_value=0.965732	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.7	fisher_strand_p_value=0.749896	frequency=6.667e-01	ks_quality_p_value=1	major_base=T	major_cov=14/14	major_frequency=6.667e-01	minor_base=C	minor_cov=8/6	new_cov=14/14	polymorphism_frequency=6.667e-01	polymorphism_score=37.2	prediction=polymorphism	ref_cov=8/6	total_cov=22/20
RA	315	.	NC_000913	1423273	0	G	A	bias_e_value=4219990	bias_p_value=0.909156	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.6	fisher_strand_p_value=0.749896	frequency=6.667e-01	ks_quality_p_value=0.807118	major_base=A	major_cov=14/14	major_frequency=6.667e-01	minor_base=G	minor_cov=8/6	new_cov=14/14	polymorphism_frequency=6.667e-01	polymorphism_score=34.9	prediction=polymorphism	ref_cov=8/6	total_cov=22/20
RA	316	.	NC_000913	1423283	0	A	C	bias_e_value=4482220	bias_p_value=0.965651	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.8	fisher_strand_p_value=0.749617	frequency=6.429e-01	ks_quality_p_value=1	major_base=C	major_cov=14/13	major_frequency=6.429e-01	minor_base=A	minor_cov=9/6	new_cov=14/13	polymorphism_frequency=6.429e-01	polymorphism_score=32.9	prediction=polymorphism	ref_cov=9/6	total_cov=23/20
RA	317	.	NC_000913	1423284	0	A	C	bias_e_value=4439560	bias_p_value=0.95646	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.3	fisher_strand_p_value=0.749169	frequency=6.512e-01	ks_quality_p_value=0.960811	major_base=C	major_cov=14/14	major_frequency=6.512e-01	minor_base=A	minor_cov=9/6	new_cov=14/14	polymorphism_frequency=6.512e-01	polymorphism_score=33.4	prediction=polymorphism	ref_cov=9/6	total_cov=23/20
RA	318	.	NC_000913	1423338	0	G	C	bias_e_value=4481620	bias_p_value=0.965522	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.8	fisher_strand_p_value=0.749169	frequency=6.512e-01	ks_quality_p_value=1	major_base=C	major_cov=14/14	major_frequency=6.512e-01	minor_base=G	minor_cov=9/6	new_cov=14/14	polymorphism_frequency=6.512e-01	polymorphism_score=43.3	prediction=polymorphism	ref_cov=9/6	total_cov=23/20
RA	319	.	NC_000913	1423404	0	G	T	bias_e_value=4481620	bias_p_value=0.965522	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.9	fisher_strand_p_value=0.749169	frequency=6.512e-01	ks_quality_p_value=1	major_base=T	major_cov=14/14	major_frequency=6.512e-01	minor_base=G	minor_cov=9/6	new_cov=14/14	polymorphism_frequency=6.512e-01	polymorphism_score=40.2	prediction=polymorphism	ref_cov=9/6	total_cov=23/20
RA	320	.	NC_000913	1428925	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.4	fisher_strand_p_value=1	frequency=3.684e-01	ks_quality_p_value=1	major_base=C	major_cov=1/11	major_frequency=6.316e-01	minor_base=T	minor_cov=0/7	new_cov=0/7	polymorphism_frequency=3.684e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=1/11	total_cov=1/18
RA	321	.	NC_000913	1428945	0	C	T	bias_e_value=4635820	bias_p_value=0.998744	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.2	fisher_strand_p_value=1	frequency=5.667e-01	ks_quality_p_value=0.950297	major_base=T	major_cov=1/16	major_frequency=5.667e-01	minor_base=C	minor_cov=1/12	new_cov=1/16	polymorphism_frequency=5.667e-01	polymorphism_score=36.7	prediction=polymorphism	ref_cov=1/12	total_cov=2/28
RA	322	.	NC_000913	1428954	0	T	A	bias_e_value=4564280	bias_p_value=0.983331	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.2	fisher_strand_p_value=1	frequency=5.862e-01	ks_quality_p_value=0.82306	major_base=A	major_cov=1/16	major_frequency=5.862e-01	minor_base=T	minor_cov=1/11	new_cov=1/16	polymorphism_frequency=5.862e-01	polymorphism_score=47.7	prediction=polymorphism	ref_cov=1/11	total_cov=2/27
RA	323	.	NC_000913	1428963	0	G	T	bias_e_value=4637200	bias_p_value=0.999041	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.4	fisher_strand_p_value=1	frequency=6.000e-01	ks_quality_p_value=0.956529	major_base=T	major_cov=1/17	major_frequency=6.000e-01	minor_base=G	minor_cov=1/11	new_cov=1/17	polymorphism_frequency=6.000e-01	polymorphism_score=28.4	prediction=polymorphism	ref_cov=1/11	total_cov=2/28
RA	324	.	NC_000913	1428966	0	T	G	bias_e_value=4637200	bias_p_value=0.999041	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.1	fisher_strand_p_value=1	frequency=6.000e-01	ks_quality_p_value=0.956529	major_base=G	major_cov=1/17	major_frequency=6.000e-01	minor_base=T	minor_cov=1/11	new_cov=1/17	polymorphism_frequency=6.000e-01	polymorphism_score=30.2	prediction=polymorphism	ref_cov=1/11	total_cov=2/28
RA	325	.	NC_000913	1428978	0	G	A	bias_e_value=4641370	bias_p_value=0.999939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.4	fisher_strand_p_value=1	frequency=6.000e-01	ks_quality_p_value=0.98895	major_base=A	major_cov=1/17	major_frequency=6.000e-01	minor_base=G	minor_cov=1/11	new_cov=1/17	polymorphism_frequency=6.000e-01	polymorphism_score=31.1	prediction=polymorphism	ref_cov=1/11	total_cov=2/28
RA	326	.	NC_000913	1429021	0	T	A	bias_e_value=4299940	bias_p_value=0.926381	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.3	fisher_strand_p_value=0.641702	frequency=7.500e-01	ks_quality_p_value=1	major_base=A	major_cov=7/17	major_frequency=7.500e-01	minor_base=T	minor_cov=1/7	new_cov=7/17	polymorphism_frequency=7.500e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=1/7	total_cov=8/24
RA	327	.	NC_000913	1429022	0	T	A	bias_e_value=4272060	bias_p_value=0.920374	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.2	fisher_strand_p_value=0.641702	frequency=7.500e-01	ks_quality_p_value=0.979382	major_base=A	major_cov=7/17	major_frequency=7.500e-01	minor_base=T	minor_cov=1/7	new_cov=7/17	polymorphism_frequency=7.500e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=1/7	total_cov=8/24
RA	328	.	NC_000913	1429024	0	A	C	bias_e_value=4299940	bias_p_value=0.926381	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.4	fisher_strand_p_value=0.641702	frequency=7.500e-01	ks_quality_p_value=1	major_base=C	major_cov=7/17	major_frequency=7.500e-01	minor_base=A	minor_cov=1/7	new_cov=7/17	polymorphism_frequency=7.500e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=1/7	total_cov=8/24
RA	329	.	NC_000913	1429027	0	C	T	bias_e_value=4299940	bias_p_value=0.926381	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.4	fisher_strand_p_value=0.641702	frequency=7.500e-01	ks_quality_p_value=1	major_base=T	major_cov=7/17	major_frequency=7.500e-01	minor_base=C	minor_cov=1/7	new_cov=7/17	polymorphism_frequency=7.500e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=1/7	total_cov=8/24
RA	330	.	NC_000913	1429069	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.1	fisher_strand_p_value=1	frequency=7.561e-01	ks_quality_p_value=1	major_base=A	major_cov=7/24	major_frequency=7.561e-01	minor_base=T	minor_cov=2/8	new_cov=7/24	polymorphism_frequency=7.561e-01	polymorphism_score=35.0	prediction=polymorphism	ref_cov=2/8	total_cov=9/32
RA	331	.	NC_000913	1429072	0	A	C	bias_e_value=4641080	bias_p_value=0.999877	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.8	fisher_strand_p_value=1	frequency=7.561e-01	ks_quality_p_value=0.984388	major_base=C	major_cov=7/24	major_frequency=7.561e-01	minor_base=A	minor_cov=2/8	new_cov=7/24	polymorphism_frequency=7.561e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=2/8	total_cov=9/32
RA	332	.	NC_000913	1429111	0	A	C	bias_e_value=4641280	bias_p_value=0.99992	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.1	fisher_strand_p_value=1	frequency=7.778e-01	ks_quality_p_value=0.987382	major_base=C	major_cov=7/28	major_frequency=7.778e-01	minor_base=A	minor_cov=2/8	new_cov=7/28	polymorphism_frequency=7.778e-01	polymorphism_score=23.3	prediction=polymorphism	ref_cov=2/8	total_cov=9/36
RA	333	.	NC_000913	1429114	0	C	T	bias_e_value=4641240	bias_p_value=0.999911	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.6	fisher_strand_p_value=1	frequency=7.727e-01	ks_quality_p_value=0.98672	major_base=T	major_cov=7/27	major_frequency=7.727e-01	minor_base=C	minor_cov=2/8	new_cov=7/27	polymorphism_frequency=7.727e-01	polymorphism_score=22.4	prediction=polymorphism	ref_cov=2/8	total_cov=9/36
RA	334	.	NC_000913	1429126	0	A	C	bias_e_value=4613550	bias_p_value=0.993946	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.6	fisher_strand_p_value=1	frequency=7.778e-01	ks_quality_p_value=0.892003	major_base=C	major_cov=7/28	major_frequency=7.778e-01	minor_base=A	minor_cov=2/8	new_cov=7/28	polymorphism_frequency=7.778e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=2/8	total_cov=9/37
RA	335	.	NC_000913	1429128	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.8	fisher_strand_p_value=1	frequency=7.778e-01	ks_quality_p_value=1	major_base=G	major_cov=7/28	major_frequency=7.778e-01	minor_base=A	minor_cov=2/8	new_cov=7/28	polymorphism_frequency=7.778e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=2/8	total_cov=9/37
RA	336	.	NC_000913	1429160	0	C	G	bias_e_value=4495920	bias_p_value=0.968604	consensus_score=133.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.760115	major_base=G	major_cov=9/33	major_frequency=8.400e-01	minor_base=C	minor_cov=2/6	new_cov=9/33	polymorphism_frequency=8.400e-01	polymorphism_score=17.8	prediction=consensus	ref_cov=2/6	total_cov=11/40
RA	337	.	NC_000913	1429164	0	C	G	bias_e_value=4641530	bias_p_value=0.999974	consensus_score=143.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992731	major_base=G	major_cov=9/34	major_frequency=8.431e-01	minor_base=C	minor_cov=2/6	new_cov=9/34	polymorphism_frequency=8.431e-01	polymorphism_score=17.8	prediction=consensus	ref_cov=2/6	total_cov=11/40
RA	338	.	NC_000913	1429171	0	A	G	bias_e_value=4301680	bias_p_value=0.926757	consensus_score=142.0	fisher_strand_p_value=0.659321	frequency=1	ks_quality_p_value=0.974564	major_base=G	major_cov=9/37	major_frequency=8.519e-01	minor_base=A	minor_cov=2/6	new_cov=9/37	polymorphism_frequency=8.519e-01	polymorphism_score=16.7	prediction=consensus	ref_cov=2/6	total_cov=11/43
RA	339	.	NC_000913	1429204	0	C	T	bias_e_value=4265690	bias_p_value=0.919002	consensus_score=136.9	fisher_strand_p_value=0.666167	frequency=1	ks_quality_p_value=0.939003	major_base=T	major_cov=11/33	major_frequency=8.462e-01	minor_base=C	minor_cov=3/5	new_cov=11/33	polymorphism_frequency=8.462e-01	polymorphism_score=15.9	prediction=consensus	ref_cov=3/5	total_cov=14/38
RA	340	.	NC_000913	1429207	0	T	G	bias_e_value=4312340	bias_p_value=0.929054	consensus_score=137.5	fisher_strand_p_value=0.666167	frequency=1	ks_quality_p_value=0.972416	major_base=G	major_cov=11/33	major_frequency=8.462e-01	minor_base=T	minor_cov=3/5	new_cov=11/33	polymorphism_frequency=8.462e-01	polymorphism_score=14.4	prediction=consensus	ref_cov=3/5	total_cov=14/38
RA	341	.	NC_000913	1429225	0	C	T	bias_e_value=3405490	bias_p_value=0.733681	consensus_score=88.6	fisher_strand_p_value=0.3924	frequency=1	ks_quality_p_value=0.93223	major_base=T	major_cov=10/22	major_frequency=8.421e-01	minor_base=C	minor_cov=3/3	new_cov=10/22	polymorphism_frequency=8.421e-01	polymorphism_score=9.5	prediction=consensus	ref_cov=3/3	total_cov=13/25
RA	342	.	NC_000913	1429228	0	T	C	bias_e_value=3125540	bias_p_value=0.673367	consensus_score=100.5	fisher_strand_p_value=0.320918	frequency=1	ks_quality_p_value=0.966781	major_base=C	major_cov=10/22	major_frequency=8.649e-01	minor_base=T	minor_cov=3/2	new_cov=10/22	polymorphism_frequency=8.649e-01	polymorphism_score=8.3	prediction=consensus	ref_cov=3/2	total_cov=13/24
RA	343	.	NC_000913	1429231	0	T	C	bias_e_value=3054600	bias_p_value=0.658084	consensus_score=99.0	fisher_strand_p_value=0.320918	frequency=1	ks_quality_p_value=0.926804	major_base=C	major_cov=10/22	major_frequency=8.649e-01	minor_base=T	minor_cov=3/2	new_cov=10/22	polymorphism_frequency=8.649e-01	polymorphism_score=8.3	prediction=consensus	ref_cov=3/2	total_cov=13/24
RA	344	.	NC_000913	1429235	0	T	C	bias_e_value=1701380	bias_p_value=0.366547	consensus_score=103.4	fisher_strand_p_value=0.12381	frequency=1	ks_quality_p_value=0.939413	major_base=C	major_cov=10/22	major_frequency=8.889e-01	minor_base=T	minor_cov=3/1	new_cov=10/22	polymorphism_frequency=8.889e-01	polymorphism_score=5.2	prediction=consensus	ref_cov=3/1	total_cov=13/23
RA	345	.	NC_000913	1429236	0	T	A	bias_e_value=1742090	bias_p_value=0.375317	consensus_score=103.6	fisher_strand_p_value=0.12381	frequency=1	ks_quality_p_value=0.972604	major_base=A	major_cov=10/22	major_frequency=8.889e-01	minor_base=T	minor_cov=3/1	new_cov=10/22	polymorphism_frequency=8.889e-01	polymorphism_score=9.9	prediction=consensus	ref_cov=3/1	total_cov=13/23
RA	346	.	NC_000913	1429240	0	G	T	bias_e_value=1742090	bias_p_value=0.375317	consensus_score=101.3	fisher_strand_p_value=0.12381	frequency=1	ks_quality_p_value=0.972604	major_base=T	major_cov=10/22	major_frequency=8.889e-01	minor_base=G	minor_cov=3/1	new_cov=10/22	polymorphism_frequency=8.889e-01	polymorphism_score=5.9	prediction=consensus	ref_cov=3/1	total_cov=13/23
RA	347	.	NC_000913	1429243	0	A	C	bias_e_value=1645650	bias_p_value=0.35454	consensus_score=109.6	fisher_strand_p_value=0.12381	frequency=1	ks_quality_p_value=0.894839	major_base=C	major_cov=10/22	major_frequency=8.889e-01	minor_base=A	minor_cov=3/1	new_cov=10/22	polymorphism_frequency=8.889e-01	polymorphism_score=3.1	prediction=consensus	ref_cov=3/1	total_cov=13/23
RA	348	.	NC_000913	1429246	0	A	T	bias_e_value=1742090	bias_p_value=0.375317	consensus_score=111.7	fisher_strand_p_value=0.12381	frequency=1	ks_quality_p_value=0.972604	major_base=T	major_cov=10/22	major_frequency=8.889e-01	minor_base=A	minor_cov=3/1	new_cov=10/22	polymorphism_frequency=8.889e-01	polymorphism_score=9.3	prediction=consensus	ref_cov=3/1	total_cov=13/23
RA	349	.	NC_000913	1429249	0	C	T	bias_e_value=1645650	bias_p_value=0.35454	consensus_score=98.2	fisher_strand_p_value=0.12381	frequency=1	ks_quality_p_value=0.894839	major_base=T	major_cov=10/22	major_frequency=8.889e-01	minor_base=C	minor_cov=3/1	new_cov=10/22	polymorphism_frequency=8.889e-01	polymorphism_score=5.5	prediction=consensus	ref_cov=3/1	total_cov=13/23
RA	350	.	NC_000913	1429252	0	G	A	bias_e_value=1494410	bias_p_value=0.321957	consensus_score=98.1	fisher_strand_p_value=0.12381	frequency=1	ks_quality_p_value=0.778801	major_base=A	major_cov=10/22	major_frequency=8.889e-01	minor_base=G	minor_cov=3/1	new_cov=10/22	polymorphism_frequency=8.889e-01	polymorphism_score=4.7	prediction=consensus	ref_cov=3/1	total_cov=13/23
RA	351	.	NC_000913	1429255	0	G	A	bias_e_value=1494410	bias_p_value=0.321957	consensus_score=98.1	fisher_strand_p_value=0.12381	frequency=1	ks_quality_p_value=0.778801	major_base=A	major_cov=10/22	major_frequency=8.889e-01	minor_base=G	minor_cov=3/1	new_cov=10/22	polymorphism_frequency=8.889e-01	polymorphism_score=4.7	prediction=consensus	ref_cov=3/1	total_cov=13/23
RA	352	.	NC_000913	1429258	0	A	G	bias_e_value=3220790	bias_p_value=0.693888	consensus_score=94.0	fisher_strand_p_value=0.328227	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=10/21	major_frequency=8.611e-01	minor_base=A	minor_cov=3/2	new_cov=10/21	polymorphism_frequency=8.611e-01	polymorphism_score=5.8	prediction=consensus	ref_cov=3/2	total_cov=13/23
RA	353	.	NC_000913	1429261	0	T	C	bias_e_value=1645650	bias_p_value=0.35454	consensus_score=97.7	fisher_strand_p_value=0.12381	frequency=1	ks_quality_p_value=0.894839	major_base=C	major_cov=10/22	major_frequency=8.889e-01	minor_base=T	minor_cov=3/1	new_cov=10/22	polymorphism_frequency=8.889e-01	polymorphism_score=5.2	prediction=consensus	ref_cov=3/1	total_cov=13/23
RA	354	.	NC_000913	1429273	0	T	C	bias_e_value=2978340	bias_p_value=0.641655	consensus_score=124.1	fisher_strand_p_value=0.297239	frequency=1	ks_quality_p_value=0.95589	major_base=C	major_cov=15/23	major_frequency=9.048e-01	minor_base=T	minor_cov=3/1	new_cov=15/23	polymorphism_frequency=9.048e-01	polymorphism_score=5.0	prediction=consensus	ref_cov=3/1	total_cov=18/24
RA	355	.	NC_000913	1429291	0	T	A	bias_e_value=2890720	bias_p_value=0.622778	consensus_score=116.3	fisher_strand_p_value=0.283248	frequency=1	ks_quality_p_value=0.951229	major_base=A	major_cov=13/23	major_frequency=9.000e-01	minor_base=T	minor_cov=3/1	new_cov=13/23	polymorphism_frequency=9.000e-01	polymorphism_score=9.7	prediction=consensus	ref_cov=3/1	total_cov=16/24
RA	356	.	NC_000913	1429297	0	C	G	bias_e_value=1601980	bias_p_value=0.345131	consensus_score=121.6	fisher_strand_p_value=0.10655	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=10/24	major_frequency=8.947e-01	minor_base=C	minor_cov=3/1	new_cov=10/24	polymorphism_frequency=8.947e-01	polymorphism_score=6.6	prediction=consensus	ref_cov=3/1	total_cov=13/25
RA	357	.	NC_000913	1429300	0	T	G	bias_e_value=2588230	bias_p_value=0.55761	consensus_score=113.3	fisher_strand_p_value=0.240669	frequency=1	ks_quality_p_value=0.926527	major_base=G	major_cov=10/24	major_frequency=9.189e-01	minor_base=T	minor_cov=2/1	new_cov=10/24	polymorphism_frequency=9.189e-01	polymorphism_score=2.2	prediction=consensus	ref_cov=2/1	total_cov=12/25
RA	358	.	NC_000913	1429319	0	G	T	bias_e_value=1676960	bias_p_value=0.361286	consensus_score=116.3	fisher_strand_p_value=0.114509	frequency=1	ks_quality_p_value=0.99446	major_base=T	major_cov=11/25	major_frequency=9.000e-01	minor_base=G	minor_cov=3/1	new_cov=11/25	polymorphism_frequency=9.000e-01	polymorphism_score=6.8	prediction=consensus	ref_cov=3/1	total_cov=14/26
RA	359	.	NC_000913	1429345	0	T	G	bias_e_value=3961990	bias_p_value=0.853574	consensus_score=127.2	fisher_strand_p_value=0.564676	frequency=1	ks_quality_p_value=0.903615	major_base=G	major_cov=15/22	major_frequency=9.250e-01	minor_base=T	minor_cov=2/1	new_cov=15/22	polymorphism_frequency=9.250e-01	polymorphism_score=1.1	prediction=consensus	ref_cov=2/1	total_cov=17/23
RA	360	.	NC_000913	1429353	0	C	T	bias_e_value=1480160	bias_p_value=0.318886	consensus_score=107.5	fisher_strand_p_value=0.105019	frequency=1	ks_quality_p_value=0.905678	major_base=T	major_cov=15/19	major_frequency=8.947e-01	minor_base=C	minor_cov=4/0	new_cov=15/19	polymorphism_frequency=8.947e-01	polymorphism_score=5.2	prediction=consensus	ref_cov=4/0	total_cov=19/19
RA	361	.	NC_000913	1429354	0	A	G	bias_e_value=1480160	bias_p_value=0.318886	consensus_score=106.3	fisher_strand_p_value=0.105019	frequency=1	ks_quality_p_value=0.905678	major_base=G	major_cov=15/19	major_frequency=8.947e-01	minor_base=A	minor_cov=4/0	new_cov=15/19	polymorphism_frequency=8.947e-01	polymorphism_score=5.2	prediction=consensus	ref_cov=4/0	total_cov=19/19
RA	362	.	NC_000913	1429360	0	C	T	bias_e_value=871416	bias_p_value=0.187738	consensus_score=115.7	fisher_strand_p_value=0.047124	frequency=1	ks_quality_p_value=0.976829	major_base=T	major_cov=15/20	major_frequency=8.974e-01	minor_base=C	minor_cov=4/0	new_cov=15/20	polymorphism_frequency=8.974e-01	polymorphism_score=5.1	prediction=consensus	ref_cov=4/0	total_cov=19/20
RA	363	.	NC_000913	1429364	0	T	C	bias_e_value=852331	bias_p_value=0.183627	consensus_score=113.5	fisher_strand_p_value=0.047124	frequency=1	ks_quality_p_value=0.94862	major_base=C	major_cov=15/20	major_frequency=8.974e-01	minor_base=T	minor_cov=4/0	new_cov=15/20	polymorphism_frequency=8.974e-01	polymorphism_score=4.9	prediction=consensus	ref_cov=4/0	total_cov=19/20
RA	364	.	NC_000913	1429404	0	C	T	bias_e_value=1466960	bias_p_value=0.316042	consensus_score=116.3	fisher_strand_p_value=0.1079	frequency=1	ks_quality_p_value=0.870325	major_base=T	major_cov=17/19	major_frequency=9.000e-01	minor_base=C	minor_cov=4/0	new_cov=17/19	polymorphism_frequency=9.000e-01	polymorphism_score=5.1	prediction=consensus	ref_cov=4/0	total_cov=21/20
RA	365	.	NC_000913	1429416	0	A	G	bias_e_value=2887190	bias_p_value=0.622018	consensus_score=105.5	fisher_strand_p_value=0.275994	frequency=1	ks_quality_p_value=0.974132	major_base=G	major_cov=19/14	major_frequency=8.919e-01	minor_base=A	minor_cov=4/0	new_cov=19/14	polymorphism_frequency=8.919e-01	polymorphism_score=5.2	prediction=consensus	ref_cov=4/0	total_cov=23/14
RA	366	.	NC_000913	1429417	0	C	T	bias_e_value=2665690	bias_p_value=0.574297	consensus_score=101.5	fisher_strand_p_value=0.275994	frequency=1	ks_quality_p_value=0.848912	major_base=T	major_cov=19/14	major_frequency=8.919e-01	minor_base=C	minor_cov=4/0	new_cov=19/14	polymorphism_frequency=8.919e-01	polymorphism_score=5.3	prediction=consensus	ref_cov=4/0	total_cov=23/14
RA	367	.	NC_000913	1429425	0	C	A	bias_e_value=4226690	bias_p_value=0.910601	consensus_score=87.6	fisher_strand_p_value=0.629041	frequency=1	ks_quality_p_value=0.966781	major_base=A	major_cov=18/14	major_frequency=8.649e-01	minor_base=C	minor_cov=4/1	new_cov=18/14	polymorphism_frequency=8.649e-01	polymorphism_score=8.9	prediction=consensus	ref_cov=4/1	total_cov=22/15
RA	368	.	NC_000913	1429435	0	G	A	bias_e_value=2490480	bias_p_value=0.53655	consensus_score=85.4	fisher_strand_p_value=0.209241	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/14	major_frequency=8.158e-01	minor_base=G	minor_cov=6/1	new_cov=17/14	polymorphism_frequency=8.158e-01	polymorphism_score=12.7	prediction=consensus	ref_cov=6/1	total_cov=23/15
RA	369	.	NC_000913	1429442	0	A	G	bias_e_value=3256510	bias_p_value=0.701583	consensus_score=83.6	fisher_strand_p_value=0.370454	frequency=1	ks_quality_p_value=0.904837	major_base=G	major_cov=17/13	major_frequency=8.333e-01	minor_base=A	minor_cov=5/1	new_cov=17/13	polymorphism_frequency=8.333e-01	polymorphism_score=11.8	prediction=consensus	ref_cov=5/1	total_cov=22/15
RA	370	.	NC_000913	1429444	0	T	C	bias_e_value=3398810	bias_p_value=0.732241	consensus_score=91.9	fisher_strand_p_value=0.36821	frequency=1	ks_quality_p_value=0.989592	major_base=C	major_cov=17/14	major_frequency=8.378e-01	minor_base=T	minor_cov=5/1	new_cov=17/14	polymorphism_frequency=8.378e-01	polymorphism_score=11.2	prediction=consensus	ref_cov=5/1	total_cov=22/15
RA	371	.	NC_000913	1429453	0	C	T	bias_e_value=3409560	bias_p_value=0.734558	consensus_score=89.5	fisher_strand_p_value=0.36668	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/14	major_frequency=8.333e-01	minor_base=C	minor_cov=5/1	new_cov=16/14	polymorphism_frequency=8.333e-01	polymorphism_score=12.2	prediction=consensus	ref_cov=5/1	total_cov=21/15
RA	372	.	NC_000913	1429454	0	A	G	bias_e_value=3390590	bias_p_value=0.73047	consensus_score=87.4	fisher_strand_p_value=0.36668	frequency=1	ks_quality_p_value=0.98895	major_base=G	major_cov=16/14	major_frequency=8.333e-01	minor_base=A	minor_cov=5/1	new_cov=16/14	polymorphism_frequency=8.333e-01	polymorphism_score=11.9	prediction=consensus	ref_cov=5/1	total_cov=21/15
RA	373	.	NC_000913	1429462	0	C	T	bias_e_value=4256920	bias_p_value=0.917113	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.6	fisher_strand_p_value=0.632815	frequency=7.931e-01	ks_quality_p_value=0.98217	major_base=T	major_cov=14/9	major_frequency=7.931e-01	minor_base=C	minor_cov=5/1	new_cov=14/9	polymorphism_frequency=7.931e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=5/1	total_cov=20/10
RA	374	.	NC_000913	1429463	0	C	G	bias_e_value=4064220	bias_p_value=0.875598	consensus_score=67.5	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=0.860708	major_base=G	major_cov=15/9	major_frequency=8.000e-01	minor_base=C	minor_cov=5/1	new_cov=15/9	polymorphism_frequency=8.000e-01	polymorphism_score=15.5	prediction=consensus	ref_cov=5/1	total_cov=20/10
RA	375	.	NC_000913	1429464	0	G	C	bias_e_value=4258730	bias_p_value=0.917504	consensus_score=75.7	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=0.983471	major_base=C	major_cov=15/9	major_frequency=8.000e-01	minor_base=G	minor_cov=5/1	new_cov=15/9	polymorphism_frequency=8.000e-01	polymorphism_score=15.3	prediction=consensus	ref_cov=5/1	total_cov=20/10
RA	376	.	NC_000913	1429466	0	G	C	bias_e_value=4281350	bias_p_value=0.922377	consensus_score=77.0	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=15/9	major_frequency=8.000e-01	minor_base=G	minor_cov=5/1	new_cov=15/9	polymorphism_frequency=8.000e-01	polymorphism_score=14.4	prediction=consensus	ref_cov=5/1	total_cov=20/10
RA	377	.	NC_000913	1429470	0	C	T	bias_e_value=4281350	bias_p_value=0.922377	consensus_score=65.4	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/9	major_frequency=8.000e-01	minor_base=C	minor_cov=5/1	new_cov=15/9	polymorphism_frequency=8.000e-01	polymorphism_score=12.7	prediction=consensus	ref_cov=5/1	total_cov=20/10
RA	378	.	NC_000913	1429471	0	G	C	bias_e_value=4281350	bias_p_value=0.922377	consensus_score=76.1	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=15/9	major_frequency=8.000e-01	minor_base=G	minor_cov=5/1	new_cov=15/9	polymorphism_frequency=8.000e-01	polymorphism_score=15.3	prediction=consensus	ref_cov=5/1	total_cov=20/10
RA	379	.	NC_000913	1429474	0	A	G	bias_e_value=3316870	bias_p_value=0.714589	consensus_score=53.2	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=0.548812	major_base=G	major_cov=15/9	major_frequency=8.000e-01	minor_base=A	minor_cov=5/1	new_cov=15/9	polymorphism_frequency=8.000e-01	polymorphism_score=12.4	prediction=consensus	ref_cov=5/1	total_cov=20/10
RA	380	.	NC_000913	1429475	0	A	G	bias_e_value=4188430	bias_p_value=0.902357	consensus_score=61.5	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=0.935507	major_base=G	major_cov=15/9	major_frequency=8.000e-01	minor_base=A	minor_cov=5/1	new_cov=15/9	polymorphism_frequency=8.000e-01	polymorphism_score=12.4	prediction=consensus	ref_cov=5/1	total_cov=20/10
RA	381	.	NC_000913	1429479	0	A	T	bias_e_value=4188430	bias_p_value=0.902357	consensus_score=79.1	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=0.935507	major_base=T	major_cov=15/9	major_frequency=8.000e-01	minor_base=A	minor_cov=5/1	new_cov=15/9	polymorphism_frequency=8.000e-01	polymorphism_score=19.0	prediction=consensus	ref_cov=5/1	total_cov=20/10
RA	382	.	NC_000913	1429482	0	C	T	bias_e_value=4281350	bias_p_value=0.922377	consensus_score=65.4	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/9	major_frequency=8.000e-01	minor_base=C	minor_cov=5/1	new_cov=15/9	polymorphism_frequency=8.000e-01	polymorphism_score=12.7	prediction=consensus	ref_cov=5/1	total_cov=20/10
RA	383	.	NC_000913	1429484	0	G	A	bias_e_value=4258730	bias_p_value=0.917504	consensus_score=64.1	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=0.983471	major_base=A	major_cov=15/9	major_frequency=8.000e-01	minor_base=G	minor_cov=5/1	new_cov=15/9	polymorphism_frequency=8.000e-01	polymorphism_score=12.3	prediction=consensus	ref_cov=5/1	total_cov=20/10
RA	384	.	NC_000913	1429492	0	T	A	bias_e_value=4261880	bias_p_value=0.918182	consensus_score=74.5	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=0.985735	major_base=A	major_cov=15/9	major_frequency=8.276e-01	minor_base=T	minor_cov=4/1	new_cov=15/9	polymorphism_frequency=8.276e-01	polymorphism_score=14.5	prediction=consensus	ref_cov=4/1	total_cov=19/10
RA	385	.	NC_000913	1429493	0	G	A	bias_e_value=4261880	bias_p_value=0.918182	consensus_score=68.3	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=0.985735	major_base=A	major_cov=15/9	major_frequency=8.276e-01	minor_base=G	minor_cov=4/1	new_cov=15/9	polymorphism_frequency=8.276e-01	polymorphism_score=8.7	prediction=consensus	ref_cov=4/1	total_cov=19/10
RA	386	.	NC_000913	1429495	0	G	T	bias_e_value=4095780	bias_p_value=0.882397	consensus_score=62.7	fisher_strand_p_value=0.632815	frequency=1	ks_quality_p_value=0.878701	major_base=T	major_cov=15/9	major_frequency=8.276e-01	minor_base=G	minor_cov=4/1	new_cov=15/9	polymorphism_frequency=8.276e-01	polymorphism_score=10.6	prediction=consensus	ref_cov=4/1	total_cov=19/10
RA	387	.	NC_000913	1429510	0	A	C	bias_e_value=4618150	bias_p_value=0.994937	consensus_score=82.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.901075	major_base=C	major_cov=18/9	major_frequency=8.438e-01	minor_base=A	minor_cov=4/1	new_cov=18/9	polymorphism_frequency=8.438e-01	polymorphism_score=6.7	prediction=consensus	ref_cov=4/1	total_cov=22/10
RA	388	.	NC_000913	1429522	0	A	C	bias_e_value=4641180	bias_p_value=0.999899	consensus_score=82.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985816	major_base=C	major_cov=18/10	major_frequency=8.000e-01	minor_base=A	minor_cov=4/3	new_cov=18/10	polymorphism_frequency=8.000e-01	polymorphism_score=12.3	prediction=consensus	ref_cov=4/3	total_cov=22/13
RA	389	.	NC_000913	1429534	0	C	T	bias_e_value=4606420	bias_p_value=0.99241	consensus_score=72.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.879351	major_base=T	major_cov=18/10	major_frequency=8.000e-01	minor_base=C	minor_cov=4/3	new_cov=18/10	polymorphism_frequency=8.000e-01	polymorphism_score=16.1	prediction=consensus	ref_cov=4/3	total_cov=22/13
RA	390	.	NC_000913	1429537	0	G	A	bias_e_value=4524020	bias_p_value=0.974657	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.5	fisher_strand_p_value=1	frequency=7.941e-01	ks_quality_p_value=0.783481	major_base=A	major_cov=17/10	major_frequency=7.941e-01	minor_base=G	minor_cov=4/3	new_cov=17/10	polymorphism_frequency=7.941e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=4/3	total_cov=21/13
RA	391	.	NC_000913	1429543	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.4	fisher_strand_p_value=1	frequency=7.941e-01	ks_quality_p_value=1	major_base=A	major_cov=17/10	major_frequency=7.941e-01	minor_base=G	minor_cov=4/3	new_cov=17/10	polymorphism_frequency=7.941e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=4/3	total_cov=21/13
RA	392	.	NC_000913	1429550	0	T	G	bias_e_value=4389110	bias_p_value=0.945592	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.4	fisher_strand_p_value=1	frequency=7.838e-01	ks_quality_p_value=0.688812	major_base=G	major_cov=18/11	major_frequency=7.838e-01	minor_base=T	minor_cov=5/3	new_cov=18/11	polymorphism_frequency=7.838e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=5/3	total_cov=23/14
RA	393	.	NC_000913	1429551	0	C	A	bias_e_value=4603410	bias_p_value=0.991761	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.2	fisher_strand_p_value=1	frequency=7.838e-01	ks_quality_p_value=0.874412	major_base=A	major_cov=18/11	major_frequency=7.838e-01	minor_base=C	minor_cov=5/3	new_cov=18/11	polymorphism_frequency=7.838e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=5/3	total_cov=23/14
RA	394	.	NC_000913	1429558	0	T	C	bias_e_value=4629170	bias_p_value=0.997311	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.9	fisher_strand_p_value=1	frequency=7.368e-01	ks_quality_p_value=0.927569	major_base=C	major_cov=17/11	major_frequency=7.368e-01	minor_base=T	minor_cov=6/4	new_cov=17/11	polymorphism_frequency=7.368e-01	polymorphism_score=25.8	prediction=polymorphism	ref_cov=6/4	total_cov=23/15
RA	395	.	NC_000913	1429562	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.2	fisher_strand_p_value=1	frequency=7.027e-01	ks_quality_p_value=1	major_base=G	major_cov=16/10	major_frequency=7.027e-01	minor_base=A	minor_cov=7/4	new_cov=16/10	polymorphism_frequency=7.027e-01	polymorphism_score=26.1	prediction=polymorphism	ref_cov=7/4	total_cov=23/15
RA	396	.	NC_000913	1429569	0	G	A	bias_e_value=4640840	bias_p_value=0.999826	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.9	fisher_strand_p_value=1	frequency=7.368e-01	ks_quality_p_value=0.981379	major_base=A	major_cov=17/11	major_frequency=7.368e-01	minor_base=G	minor_cov=6/4	new_cov=17/11	polymorphism_frequency=7.368e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=6/4	total_cov=23/15
RA	397	.	NC_000913	1429571	0	A	G	bias_e_value=4640840	bias_p_value=0.999826	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.6	fisher_strand_p_value=1	frequency=7.368e-01	ks_quality_p_value=0.981379	major_base=G	major_cov=17/11	major_frequency=7.368e-01	minor_base=A	minor_cov=6/4	new_cov=17/11	polymorphism_frequency=7.368e-01	polymorphism_score=25.4	prediction=polymorphism	ref_cov=6/4	total_cov=23/15
RA	398	.	NC_000913	1429580	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.8	fisher_strand_p_value=1	frequency=7.105e-01	ks_quality_p_value=1	major_base=G	major_cov=16/11	major_frequency=7.105e-01	minor_base=A	minor_cov=7/4	new_cov=16/11	polymorphism_frequency=7.105e-01	polymorphism_score=26.1	prediction=polymorphism	ref_cov=7/4	total_cov=23/15
RA	399	.	NC_000913	1429597	0	A	G	bias_e_value=4404290	bias_p_value=0.948862	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.7	fisher_strand_p_value=0.708982	frequency=7.442e-01	ks_quality_p_value=0.984139	major_base=G	major_cov=23/9	major_frequency=7.442e-01	minor_base=A	minor_cov=7/4	new_cov=23/9	polymorphism_frequency=7.442e-01	polymorphism_score=28.3	prediction=polymorphism	ref_cov=7/4	total_cov=30/13
RA	400	.	NC_000913	1429598	0	T	G	bias_e_value=4346090	bias_p_value=0.936323	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.2	fisher_strand_p_value=0.708982	frequency=7.442e-01	ks_quality_p_value=0.938049	major_base=G	major_cov=23/9	major_frequency=7.442e-01	minor_base=T	minor_cov=7/4	new_cov=23/9	polymorphism_frequency=7.442e-01	polymorphism_score=29.4	prediction=polymorphism	ref_cov=7/4	total_cov=30/13
RA	401	.	NC_000913	1429599	0	C	A	bias_e_value=4240000	bias_p_value=0.913467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.3	fisher_strand_p_value=0.708982	frequency=7.442e-01	ks_quality_p_value=0.865978	major_base=A	major_cov=23/9	major_frequency=7.442e-01	minor_base=C	minor_cov=7/4	new_cov=23/9	polymorphism_frequency=7.442e-01	polymorphism_score=31.4	prediction=polymorphism	ref_cov=7/4	total_cov=30/13
RA	402	.	NC_000913	1429609	0	T	C	bias_e_value=4389730	bias_p_value=0.945727	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.0	fisher_strand_p_value=0.704078	frequency=7.436e-01	ks_quality_p_value=0.97883	major_base=C	major_cov=20/9	major_frequency=7.436e-01	minor_base=T	minor_cov=6/4	new_cov=20/9	polymorphism_frequency=7.436e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=6/4	total_cov=26/13
RA	403	.	NC_000913	1429612	0	C	A	bias_e_value=4328640	bias_p_value=0.932565	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.8	fisher_strand_p_value=0.704078	frequency=7.436e-01	ks_quality_p_value=0.93171	major_base=A	major_cov=20/9	major_frequency=7.436e-01	minor_base=C	minor_cov=6/4	new_cov=20/9	polymorphism_frequency=7.436e-01	polymorphism_score=28.2	prediction=polymorphism	ref_cov=6/4	total_cov=26/13
RA	404	.	NC_000913	1429615	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.2	fisher_strand_p_value=1	frequency=7.250e-01	ks_quality_p_value=1	major_base=C	major_cov=20/9	major_frequency=7.250e-01	minor_base=T	minor_cov=7/4	new_cov=20/9	polymorphism_frequency=7.250e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=7/4	total_cov=27/13
RA	405	.	NC_000913	1429632	0	G	A	bias_e_value=4634970	bias_p_value=0.99856	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.3	fisher_strand_p_value=1	frequency=7.609e-01	ks_quality_p_value=0.946809	major_base=A	major_cov=22/13	major_frequency=7.609e-01	minor_base=G	minor_cov=7/4	new_cov=22/13	polymorphism_frequency=7.609e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=7/4	total_cov=29/17
RA	406	.	NC_000913	1429682	0	T	G	bias_e_value=4401690	bias_p_value=0.948302	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.4	fisher_strand_p_value=0.70424	frequency=7.872e-01	ks_quality_p_value=0.988565	major_base=G	major_cov=26/11	major_frequency=7.872e-01	minor_base=T	minor_cov=6/4	new_cov=26/11	polymorphism_frequency=7.872e-01	polymorphism_score=24.9	prediction=polymorphism	ref_cov=6/4	total_cov=32/15
RA	407	.	NC_000913	1429692	0	T	A	bias_e_value=3999180	bias_p_value=0.861586	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.3	fisher_strand_p_value=0.706488	frequency=7.826e-01	ks_quality_p_value=0.739388	major_base=A	major_cov=25/11	major_frequency=7.826e-01	minor_base=T	minor_cov=6/4	new_cov=25/11	polymorphism_frequency=7.826e-01	polymorphism_score=36.1	prediction=polymorphism	ref_cov=6/4	total_cov=31/15
RA	408	.	NC_000913	1429702	0	A	C	bias_e_value=4123220	bias_p_value=0.888309	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.0	fisher_strand_p_value=0.701348	frequency=7.727e-01	ks_quality_p_value=0.807426	major_base=C	major_cov=24/10	major_frequency=7.727e-01	minor_base=A	minor_cov=6/4	new_cov=24/10	polymorphism_frequency=7.727e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=6/4	total_cov=30/14
RA	409	.	NC_000913	1429708	0	A	G	bias_e_value=3914480	bias_p_value=0.843337	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.9	fisher_strand_p_value=0.495863	frequency=7.333e-01	ks_quality_p_value=0.99899	major_base=G	major_cov=23/10	major_frequency=7.333e-01	minor_base=A	minor_cov=7/5	new_cov=23/10	polymorphism_frequency=7.333e-01	polymorphism_score=28.7	prediction=polymorphism	ref_cov=7/5	total_cov=30/15
RA	410	.	NC_000913	1429714	0	A	C	bias_e_value=2997080	bias_p_value=0.645693	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.3	fisher_strand_p_value=0.291795	frequency=7.391e-01	ks_quality_p_value=0.984772	major_base=C	major_cov=24/10	major_frequency=7.391e-01	minor_base=A	minor_cov=6/6	new_cov=24/10	polymorphism_frequency=7.391e-01	polymorphism_score=28.4	prediction=polymorphism	ref_cov=6/6	total_cov=30/16
RA	411	.	NC_000913	1429724	0	A	G	bias_e_value=2558060	bias_p_value=0.551111	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.1	fisher_strand_p_value=0.27084	frequency=7.727e-01	ks_quality_p_value=0.807426	major_base=G	major_cov=24/10	major_frequency=7.727e-01	minor_base=A	minor_cov=5/5	new_cov=24/10	polymorphism_frequency=7.727e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=5/5	total_cov=29/15
RA	412	.	NC_000913	1429732	0	G	A	bias_e_value=2899260	bias_p_value=0.624619	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.9	fisher_strand_p_value=0.27084	frequency=7.727e-01	ks_quality_p_value=1	major_base=A	major_cov=24/10	major_frequency=7.727e-01	minor_base=G	minor_cov=5/5	new_cov=24/10	polymorphism_frequency=7.727e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=5/5	total_cov=29/15
RA	413	.	NC_000913	1429735	0	A	G	bias_e_value=2877350	bias_p_value=0.619897	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.3	fisher_strand_p_value=0.27084	frequency=7.727e-01	ks_quality_p_value=0.98672	major_base=G	major_cov=24/10	major_frequency=7.727e-01	minor_base=A	minor_cov=5/5	new_cov=24/10	polymorphism_frequency=7.727e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=5/5	total_cov=29/15
RA	414	.	NC_000913	1429741	0	A	G	bias_e_value=2812020	bias_p_value=0.605824	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.0	fisher_strand_p_value=0.27084	frequency=7.727e-01	ks_quality_p_value=0.947929	major_base=G	major_cov=24/10	major_frequency=7.727e-01	minor_base=A	minor_cov=5/5	new_cov=24/10	polymorphism_frequency=7.727e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=5/5	total_cov=29/15
RA	415	.	NC_000913	1429744	0	T	C	bias_e_value=2108340	bias_p_value=0.454222	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.3	fisher_strand_p_value=0.160551	frequency=7.556e-01	ks_quality_p_value=1	major_base=C	major_cov=24/10	major_frequency=7.556e-01	minor_base=T	minor_cov=5/6	new_cov=24/10	polymorphism_frequency=7.556e-01	polymorphism_score=25.4	prediction=polymorphism	ref_cov=5/6	total_cov=29/16
RA	416	.	NC_000913	1429747	0	G	C	bias_e_value=2088800	bias_p_value=0.450013	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.5	fisher_strand_p_value=0.160551	frequency=7.556e-01	ks_quality_p_value=0.985724	major_base=C	major_cov=24/10	major_frequency=7.556e-01	minor_base=G	minor_cov=5/6	new_cov=24/10	polymorphism_frequency=7.556e-01	polymorphism_score=32.0	prediction=polymorphism	ref_cov=5/6	total_cov=29/16
RA	417	.	NC_000913	1429750	0	C	T	bias_e_value=2088800	bias_p_value=0.450013	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.0	fisher_strand_p_value=0.160551	frequency=7.556e-01	ks_quality_p_value=0.985724	major_base=T	major_cov=24/10	major_frequency=7.556e-01	minor_base=C	minor_cov=5/6	new_cov=24/10	polymorphism_frequency=7.556e-01	polymorphism_score=25.4	prediction=polymorphism	ref_cov=5/6	total_cov=29/16
RA	418	.	NC_000913	1429753	0	G	A	bias_e_value=2037750	bias_p_value=0.439015	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.2	fisher_strand_p_value=0.160551	frequency=7.556e-01	ks_quality_p_value=0.948943	major_base=A	major_cov=24/10	major_frequency=7.556e-01	minor_base=G	minor_cov=5/6	new_cov=24/10	polymorphism_frequency=7.556e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=5/6	total_cov=29/16
RA	419	.	NC_000913	1429756	0	C	A	bias_e_value=2088800	bias_p_value=0.450013	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.0	fisher_strand_p_value=0.160551	frequency=7.556e-01	ks_quality_p_value=0.985724	major_base=A	major_cov=24/10	major_frequency=7.556e-01	minor_base=C	minor_cov=5/6	new_cov=24/10	polymorphism_frequency=7.556e-01	polymorphism_score=28.0	prediction=polymorphism	ref_cov=5/6	total_cov=29/16
RA	420	.	NC_000913	1429759	0	G	A	bias_e_value=2088800	bias_p_value=0.450013	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.0	fisher_strand_p_value=0.160551	frequency=7.556e-01	ks_quality_p_value=0.985724	major_base=A	major_cov=24/10	major_frequency=7.556e-01	minor_base=G	minor_cov=5/6	new_cov=24/10	polymorphism_frequency=7.556e-01	polymorphism_score=26.1	prediction=polymorphism	ref_cov=5/6	total_cov=29/16
RA	421	.	NC_000913	1429767	0	C	T	bias_e_value=3021930	bias_p_value=0.651047	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.8	fisher_strand_p_value=0.291795	frequency=7.391e-01	ks_quality_p_value=0.999574	major_base=T	major_cov=24/10	major_frequency=7.391e-01	minor_base=C	minor_cov=6/6	new_cov=24/10	polymorphism_frequency=7.391e-01	polymorphism_score=30.5	prediction=polymorphism	ref_cov=6/6	total_cov=30/16
RA	422	.	NC_000913	1429780	0	A	G	bias_e_value=3035930	bias_p_value=0.654062	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.0	fisher_strand_p_value=0.303176	frequency=7.273e-01	ks_quality_p_value=0.970152	major_base=G	major_cov=22/10	major_frequency=7.273e-01	minor_base=A	minor_cov=6/6	new_cov=22/10	polymorphism_frequency=7.273e-01	polymorphism_score=28.9	prediction=polymorphism	ref_cov=6/6	total_cov=28/16
RA	423	.	NC_000913	1429783	0	G	A	bias_e_value=3138130	bias_p_value=0.676081	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.6	fisher_strand_p_value=0.312583	frequency=7.209e-01	ks_quality_p_value=1	major_base=A	major_cov=21/10	major_frequency=7.209e-01	minor_base=G	minor_cov=6/6	new_cov=21/10	polymorphism_frequency=7.209e-01	polymorphism_score=27.8	prediction=polymorphism	ref_cov=6/6	total_cov=28/16
RA	424	.	NC_000913	1429816	0	C	T	bias_e_value=2991830	bias_p_value=0.644561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.2	fisher_strand_p_value=0.291953	frequency=7.143e-01	ks_quality_p_value=0.981133	major_base=T	major_cov=21/9	major_frequency=7.143e-01	minor_base=C	minor_cov=6/6	new_cov=21/9	polymorphism_frequency=7.143e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=6/6	total_cov=27/15
RA	425	.	NC_000913	1429820	0	A	G	bias_e_value=2958780	bias_p_value=0.637442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.9	fisher_strand_p_value=0.280796	frequency=7.000e-01	ks_quality_p_value=1	major_base=G	major_cov=20/8	major_frequency=7.000e-01	minor_base=A	minor_cov=6/6	new_cov=20/8	polymorphism_frequency=7.000e-01	polymorphism_score=28.2	prediction=polymorphism	ref_cov=6/6	total_cov=26/14
RA	426	.	NC_000913	1429823	0	A	C	bias_e_value=2958780	bias_p_value=0.637442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.4	fisher_strand_p_value=0.280796	frequency=7.000e-01	ks_quality_p_value=1	major_base=C	major_cov=20/8	major_frequency=7.000e-01	minor_base=A	minor_cov=6/6	new_cov=20/8	polymorphism_frequency=7.000e-01	polymorphism_score=28.0	prediction=polymorphism	ref_cov=6/6	total_cov=26/14
RA	427	.	NC_000913	1429851	0	G	A	bias_e_value=2435910	bias_p_value=0.524793	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.0	fisher_strand_p_value=0.220409	frequency=7.429e-01	ks_quality_p_value=0.915618	major_base=A	major_cov=19/7	major_frequency=7.429e-01	minor_base=G	minor_cov=4/5	new_cov=19/7	polymorphism_frequency=7.429e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=4/5	total_cov=23/12
RA	428	.	NC_000913	1429858	0	C	T	bias_e_value=2703580	bias_p_value=0.582462	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.0	fisher_strand_p_value=0.239967	frequency=7.188e-01	ks_quality_p_value=1	major_base=T	major_cov=16/7	major_frequency=7.188e-01	minor_base=C	minor_cov=4/5	new_cov=16/7	polymorphism_frequency=7.188e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=4/5	total_cov=20/12
RA	429	.	NC_000913	1429861	0	G	C	bias_e_value=2748710	bias_p_value=0.592184	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.3	fisher_strand_p_value=0.25345	frequency=7.097e-01	ks_quality_p_value=0.973952	major_base=C	major_cov=15/7	major_frequency=7.097e-01	minor_base=G	minor_cov=4/5	new_cov=15/7	polymorphism_frequency=7.097e-01	polymorphism_score=25.0	prediction=polymorphism	ref_cov=4/5	total_cov=20/12
RA	430	.	NC_000913	1429863	0	A	G	bias_e_value=2703580	bias_p_value=0.582462	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.3	fisher_strand_p_value=0.239967	frequency=7.188e-01	ks_quality_p_value=1	major_base=G	major_cov=16/7	major_frequency=7.188e-01	minor_base=A	minor_cov=4/5	new_cov=16/7	polymorphism_frequency=7.188e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=4/5	total_cov=20/12
RA	431	.	NC_000913	1429888	0	C	T	bias_e_value=3603920	bias_p_value=0.776431	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.8	fisher_strand_p_value=0.410984	frequency=6.800e-01	ks_quality_p_value=1	major_base=T	major_cov=10/7	major_frequency=6.800e-01	minor_base=C	minor_cov=3/5	new_cov=10/7	polymorphism_frequency=6.800e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=3/5	total_cov=13/12
RA	432	.	NC_000913	1429897	0	T	A	bias_e_value=4349460	bias_p_value=0.937049	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.6	fisher_strand_p_value=0.666846	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=9/7	major_frequency=6.667e-01	minor_base=T	minor_cov=3/5	new_cov=9/7	polymorphism_frequency=6.667e-01	polymorphism_score=27.6	prediction=polymorphism	ref_cov=3/5	total_cov=13/12
RA	433	.	NC_000913	1429906	0	G	A	bias_e_value=2166390	bias_p_value=0.466728	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.1	fisher_strand_p_value=0.167468	frequency=6.000e-01	ks_quality_p_value=1	major_base=A	major_cov=9/3	major_frequency=6.000e-01	minor_base=G	minor_cov=3/5	new_cov=9/3	polymorphism_frequency=6.000e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=3/5	total_cov=12/8
RA	434	.	NC_000913	1429914	0	G	A	bias_e_value=873369	bias_p_value=0.188159	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.5	fisher_strand_p_value=0.131935	frequency=5.333e-01	ks_quality_p_value=0.349938	major_base=A	major_cov=6/2	major_frequency=5.333e-01	minor_base=G	minor_cov=2/5	new_cov=6/2	polymorphism_frequency=5.333e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=2/5	total_cov=8/7
RA	435	.	NC_000913	1429917	0	A	G	bias_e_value=1712320	bias_p_value=0.368904	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.5	fisher_strand_p_value=0.131935	frequency=5.333e-01	ks_quality_p_value=0.889882	major_base=G	major_cov=6/2	major_frequency=5.333e-01	minor_base=A	minor_cov=2/5	new_cov=6/2	polymorphism_frequency=5.333e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=2/5	total_cov=8/7
RA	436	.	NC_000913	1429927	0	G	T	bias_e_value=1560200	bias_p_value=0.33613	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.1	fisher_strand_p_value=0.102564	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=6/1	major_frequency=5.000e-01	minor_base=G	minor_cov=2/5	new_cov=6/1	polymorphism_frequency=5.000e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=2/5	total_cov=8/6
RA	437	.	NC_000913	1429930	0	T	C	bias_e_value=1560200	bias_p_value=0.33613	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.9	fisher_strand_p_value=0.102564	frequency=5.000e-01	ks_quality_p_value=1	major_base=C	major_cov=6/1	major_frequency=5.000e-01	minor_base=T	minor_cov=2/5	new_cov=6/1	polymorphism_frequency=5.000e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=2/5	total_cov=8/6
RA	438	.	NC_000913	1464283	0	G	A	consensus_score=251.0	frequency=1	major_base=A	major_cov=43/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
RA	439	.	NC_000913	1494388	0	C	.	consensus_score=404.4	frequency=1	major_base=.	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	440	.	NC_000913	1502770	0	T	C	bias_e_value=551.069	bias_p_value=0.000118723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.3	fisher_strand_p_value=9.44489e-06	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=33/23	major_frequency=7.778e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.222e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=33/23	total_cov=33/39
RA	441	.	NC_000913	1502772	0	G	A	bias_e_value=41.8087	bias_p_value=9.0073e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.3	fisher_strand_p_value=5.86852e-07	frequency=2.609e-01	ks_quality_p_value=1	major_base=G	major_cov=33/18	major_frequency=7.391e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.609e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=33/18	total_cov=33/37
RA	442	.	NC_000913	1517508	0	G	T	bias_e_value=3908410	bias_p_value=0.84203	consensus_score=275.1	fisher_strand_p_value=0.493506	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/37	major_frequency=9.740e-01	minor_base=G	minor_cov=0/2	new_cov=38/37	polymorphism_frequency=9.740e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/2	total_cov=38/39
RA	443	.	NC_000913	1574501	0	G	A	consensus_score=300.7	frequency=1	major_base=A	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	444	.	NC_000913	1618227	0	C	T	consensus_score=213.8	frequency=1	major_base=T	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	445	.	NC_000913	1634370	0	T	C	bias_e_value=125871	bias_p_value=0.0271177	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.9	fisher_strand_p_value=0.00418766	frequency=5.588e-01	ks_quality_p_value=1	major_base=C	major_cov=18/1	major_frequency=5.588e-01	minor_base=T	minor_cov=7/8	new_cov=18/1	polymorphism_frequency=5.588e-01	polymorphism_score=41.4	prediction=polymorphism	ref_cov=7/8	total_cov=25/9
RA	446	.	NC_000913	1634382	0	T	C	bias_e_value=1518940	bias_p_value=0.327241	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.6	fisher_strand_p_value=0.112208	frequency=6.471e-01	ks_quality_p_value=0.879552	major_base=C	major_cov=18/4	major_frequency=6.471e-01	minor_base=T	minor_cov=6/6	new_cov=18/4	polymorphism_frequency=6.471e-01	polymorphism_score=30.8	prediction=polymorphism	ref_cov=6/6	total_cov=24/10
RA	447	.	NC_000913	1634388	0	T	G	bias_e_value=831599	bias_p_value=0.17916	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.6	fisher_strand_p_value=0.0626995	frequency=6.216e-01	ks_quality_p_value=0.690165	major_base=G	major_cov=19/4	major_frequency=6.216e-01	minor_base=T	minor_cov=7/7	new_cov=19/4	polymorphism_frequency=6.216e-01	polymorphism_score=39.7	prediction=polymorphism	ref_cov=7/7	total_cov=26/11
RA	448	.	NC_000913	1634404	0	A	G	bias_e_value=3061950	bias_p_value=0.659669	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.6	fisher_strand_p_value=0.323819	frequency=6.977e-01	ks_quality_p_value=0.922544	major_base=G	major_cov=21/9	major_frequency=6.977e-01	minor_base=A	minor_cov=7/6	new_cov=21/9	polymorphism_frequency=6.977e-01	polymorphism_score=35.5	prediction=polymorphism	ref_cov=7/6	total_cov=28/15
RA	449	.	NC_000913	1634482	0	T	C	bias_e_value=3073950	bias_p_value=0.662254	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.3	fisher_strand_p_value=0.30443	frequency=6.190e-01	ks_quality_p_value=0.988347	major_base=C	major_cov=44/21	major_frequency=6.190e-01	minor_base=T	minor_cov=23/17	new_cov=44/21	polymorphism_frequency=6.190e-01	polymorphism_score=116.4	prediction=polymorphism	ref_cov=23/17	total_cov=67/38
RA	450	.	NC_000913	1634484	0	G	T	bias_e_value=3093630	bias_p_value=0.666493	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.1	fisher_strand_p_value=0.30443	frequency=6.190e-01	ks_quality_p_value=1	major_base=T	major_cov=44/21	major_frequency=6.190e-01	minor_base=G	minor_cov=23/17	new_cov=44/21	polymorphism_frequency=6.190e-01	polymorphism_score=118.4	prediction=polymorphism	ref_cov=23/17	total_cov=67/38
RA	451	.	NC_000913	1634569	0	A	T	bias_e_value=1344380	bias_p_value=0.289634	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.1	fisher_strand_p_value=0.0861782	frequency=6.382e-01	ks_quality_p_value=0.963374	major_base=T	major_cov=65/32	major_frequency=6.382e-01	minor_base=A	minor_cov=29/26	new_cov=65/32	polymorphism_frequency=6.382e-01	polymorphism_score=231.3	prediction=polymorphism	ref_cov=29/26	total_cov=94/58
RA	452	.	NC_000913	1634571	0	C	T	bias_e_value=1441430	bias_p_value=0.310542	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.6	fisher_strand_p_value=0.120188	frequency=6.340e-01	ks_quality_p_value=0.762098	major_base=T	major_cov=65/32	major_frequency=6.340e-01	minor_base=C	minor_cov=30/26	new_cov=65/32	polymorphism_frequency=6.340e-01	polymorphism_score=173.1	prediction=polymorphism	ref_cov=30/26	total_cov=95/58
RA	453	.	NC_000913	1634578	0	T	C	bias_e_value=1712010	bias_p_value=0.368837	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.7	fisher_strand_p_value=0.167682	frequency=6.340e-01	ks_quality_p_value=0.699984	major_base=C	major_cov=64/33	major_frequency=6.340e-01	minor_base=T	minor_cov=30/26	new_cov=64/33	polymorphism_frequency=6.340e-01	polymorphism_score=165.5	prediction=polymorphism	ref_cov=30/26	total_cov=95/59
RA	454	.	NC_000913	1634597	0	C	A	bias_e_value=1535940	bias_p_value=0.330903	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.6	fisher_strand_p_value=0.101321	frequency=6.173e-01	ks_quality_p_value=0.989731	major_base=A	major_cov=65/35	major_frequency=6.173e-01	minor_base=C	minor_cov=32/30	new_cov=65/35	polymorphism_frequency=6.173e-01	polymorphism_score=195.8	prediction=polymorphism	ref_cov=32/30	total_cov=98/65
RA	455	.	NC_000913	1634658	0	A	G	bias_e_value=3965080	bias_p_value=0.85424	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.3	fisher_strand_p_value=0.511241	frequency=5.828e-01	ks_quality_p_value=1	major_base=G	major_cov=51/37	major_frequency=5.828e-01	minor_base=A	minor_cov=33/30	new_cov=51/37	polymorphism_frequency=5.828e-01	polymorphism_score=188.8	prediction=polymorphism	ref_cov=33/30	total_cov=84/67
RA	456	.	NC_000913	1634661	0	C	G	bias_e_value=4461210	bias_p_value=0.961126	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.3	fisher_strand_p_value=0.734451	frequency=6.054e-01	ks_quality_p_value=1	major_base=G	major_cov=51/38	major_frequency=6.054e-01	minor_base=C	minor_cov=31/27	new_cov=51/38	polymorphism_frequency=6.054e-01	polymorphism_score=197.2	prediction=polymorphism	ref_cov=31/27	total_cov=82/66
RA	457	.	NC_000913	1634676	0	A	G	bias_e_value=3108070	bias_p_value=0.669604	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.2	fisher_strand_p_value=0.386576	frequency=6.028e-01	ks_quality_p_value=0.794295	major_base=G	major_cov=51/34	major_frequency=6.028e-01	minor_base=A	minor_cov=29/27	new_cov=51/34	polymorphism_frequency=6.028e-01	polymorphism_score=175.5	prediction=polymorphism	ref_cov=29/27	total_cov=80/61
RA	458	.	NC_000913	1634699	0	A	C	bias_e_value=2473930	bias_p_value=0.532984	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.2	fisher_strand_p_value=0.206969	frequency=5.859e-01	ks_quality_p_value=1	major_base=C	major_cov=47/28	major_frequency=5.859e-01	minor_base=A	minor_cov=27/26	new_cov=47/28	polymorphism_frequency=5.859e-01	polymorphism_score=150.0	prediction=polymorphism	ref_cov=27/26	total_cov=74/54
RA	459	.	NC_000913	1634724	0	G	A	bias_e_value=2722360	bias_p_value=0.586506	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.2	fisher_strand_p_value=0.242813	frequency=5.877e-01	ks_quality_p_value=1	major_base=A	major_cov=44/23	major_frequency=5.877e-01	minor_base=G	minor_cov=25/22	new_cov=44/23	polymorphism_frequency=5.877e-01	polymorphism_score=134.9	prediction=polymorphism	ref_cov=25/22	total_cov=70/45
RA	460	.	NC_000913	1634769	0	T	A	bias_e_value=1291360	bias_p_value=0.278212	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.0	fisher_strand_p_value=0.0801711	frequency=5.060e-01	ks_quality_p_value=0.978941	major_base=A	major_cov=25/17	major_frequency=5.060e-01	minor_base=T	minor_cov=16/25	new_cov=25/17	polymorphism_frequency=5.060e-01	polymorphism_score=177.3	prediction=polymorphism	ref_cov=16/25	total_cov=41/42
RA	461	.	NC_000913	1634778	0	T	G	bias_e_value=908299	bias_p_value=0.195684	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.0	fisher_strand_p_value=0.0486369	frequency=5.060e-01	ks_quality_p_value=1	major_base=G	major_cov=25/17	major_frequency=5.060e-01	minor_base=T	minor_cov=15/26	new_cov=25/17	polymorphism_frequency=5.060e-01	polymorphism_score=123.2	prediction=polymorphism	ref_cov=15/26	total_cov=40/43
RA	462	.	NC_000913	1634799	0	A	G	bias_e_value=1489620	bias_p_value=0.320925	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.5	fisher_strand_p_value=0.103497	frequency=4.800e-01	ks_quality_p_value=0.927387	major_base=A	major_cov=18/21	major_frequency=5.200e-01	minor_base=G	minor_cov=24/12	new_cov=24/12	polymorphism_frequency=4.800e-01	polymorphism_score=114.0	prediction=polymorphism	ref_cov=18/21	total_cov=42/33
RA	463	.	NC_000913	1635974	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.7	fisher_strand_p_value=1	frequency=3.030e-01	ks_quality_p_value=1	major_base=T	major_cov=22/24	major_frequency=6.970e-01	minor_base=G	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=3.030e-01	polymorphism_score=55.4	prediction=polymorphism	ref_cov=22/24	total_cov=32/35
RA	464	.	NC_000913	1636068	0	T	C	bias_e_value=4199280	bias_p_value=0.904695	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.1	fisher_strand_p_value=0.59692	frequency=2.676e-01	ks_quality_p_value=0.999287	major_base=T	major_cov=23/29	major_frequency=7.324e-01	minor_base=C	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=2.676e-01	polymorphism_score=50.5	prediction=polymorphism	ref_cov=23/29	total_cov=33/38
RA	465	.	NC_000913	1636074	0	C	T	bias_e_value=4140350	bias_p_value=0.891999	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.9	fisher_strand_p_value=0.59692	frequency=2.676e-01	ks_quality_p_value=0.959666	major_base=C	major_cov=23/29	major_frequency=7.324e-01	minor_base=T	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=2.676e-01	polymorphism_score=52.9	prediction=polymorphism	ref_cov=23/29	total_cov=33/38
RA	466	.	NC_000913	1636128	0	C	T	bias_e_value=4536760	bias_p_value=0.977401	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.2	fisher_strand_p_value=0.795076	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=26/26	major_frequency=7.222e-01	minor_base=T	minor_cov=11/9	new_cov=11/9	polymorphism_frequency=2.778e-01	polymorphism_score=49.5	prediction=polymorphism	ref_cov=26/26	total_cov=37/35
RA	467	.	NC_000913	1636145	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.9	fisher_strand_p_value=1	frequency=2.254e-01	ks_quality_p_value=1	major_base=T	major_cov=28/27	major_frequency=7.746e-01	minor_base=C	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=2.254e-01	polymorphism_score=37.2	prediction=polymorphism	ref_cov=28/27	total_cov=36/35
RA	468	.	NC_000913	1636382	0	C	A	bias_e_value=1590140	bias_p_value=0.342581	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.4	fisher_strand_p_value=0.127758	frequency=3.535e-01	ks_quality_p_value=0.825106	major_base=C	major_cov=44/20	major_frequency=6.465e-01	minor_base=A	minor_cov=18/17	new_cov=18/17	polymorphism_frequency=3.535e-01	polymorphism_score=100.6	prediction=polymorphism	ref_cov=44/20	total_cov=62/37
RA	469	.	NC_000913	1636413	0	C	A	bias_e_value=2181150	bias_p_value=0.469908	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.2	fisher_strand_p_value=0.169253	frequency=4.144e-01	ks_quality_p_value=1	major_base=C	major_cov=44/21	major_frequency=5.856e-01	minor_base=A	minor_cov=25/21	new_cov=25/21	polymorphism_frequency=4.144e-01	polymorphism_score=126.2	prediction=polymorphism	ref_cov=44/21	total_cov=69/42
RA	470	.	NC_000913	1636423	0	T	C	bias_e_value=1149520	bias_p_value=0.247653	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.1	fisher_strand_p_value=0.162879	frequency=4.245e-01	ks_quality_p_value=0.410322	major_base=T	major_cov=41/20	major_frequency=5.755e-01	minor_base=C	minor_cov=24/21	new_cov=24/21	polymorphism_frequency=4.245e-01	polymorphism_score=142.0	prediction=polymorphism	ref_cov=41/20	total_cov=65/41
RA	471	.	NC_000913	1636455	0	G	A	bias_e_value=1109080	bias_p_value=0.23894	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.9	fisher_strand_p_value=0.366023	frequency=4.560e-01	ks_quality_p_value=0.173872	major_base=G	major_cov=41/27	major_frequency=5.440e-01	minor_base=A	minor_cov=29/28	new_cov=29/28	polymorphism_frequency=4.560e-01	polymorphism_score=181.6	prediction=polymorphism	ref_cov=41/27	total_cov=70/56
RA	472	.	NC_000913	1636484	0	C	T	bias_e_value=3889940	bias_p_value=0.838051	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.7	fisher_strand_p_value=0.487916	frequency=4.962e-01	ks_quality_p_value=1	major_base=C	major_cov=39/28	major_frequency=5.038e-01	minor_base=T	minor_cov=34/32	new_cov=34/32	polymorphism_frequency=4.962e-01	polymorphism_score=213.5	prediction=polymorphism	ref_cov=39/28	total_cov=73/61
RA	473	.	NC_000913	1636503	0	T	C	bias_e_value=4238910	bias_p_value=0.913233	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.2	fisher_strand_p_value=0.620885	frequency=5.034e-01	ks_quality_p_value=0.988081	major_base=C	major_cov=38/36	major_frequency=5.034e-01	minor_base=T	minor_cov=41/32	new_cov=38/36	polymorphism_frequency=5.034e-01	polymorphism_score=237.9	prediction=polymorphism	ref_cov=41/32	total_cov=79/68
RA	474	.	NC_000913	1652331	0	T	C	consensus_score=336.1	frequency=1	major_base=C	major_cov=48/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/40
RA	475	.	NC_000913	1667887	0	C	.	consensus_score=216.9	frequency=1	major_base=.	major_cov=30/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/12
RA	476	.	NC_000913	1744751	0	C	.	consensus_score=313.0	frequency=1	major_base=.	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	477	.	NC_000913	1816913	0	C	T	consensus_score=258.5	frequency=1	major_base=T	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	478	.	NC_000913	1823728	0	G	A	consensus_score=205.8	frequency=1	major_base=A	major_cov=21/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/35
RA	479	.	NC_000913	1831435	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=163.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/13	major_frequency=9.783e-01	minor_base=G	minor_cov=1/0	new_cov=32/13	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=33/13
RA	480	.	NC_000913	1835860	0	G	A	consensus_score=253.5	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	481	.	NC_000913	1845475	0	G	A	consensus_score=162.1	frequency=1	major_base=A	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	482	.	NC_000913	1845912	0	G	A	consensus_score=236.6	frequency=1	major_base=A	major_cov=44/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/23
RA	483	.	NC_000913	1854305	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=355.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999208	major_base=T	major_cov=37/63	major_frequency=9.901e-01	minor_base=G	minor_cov=0/1	new_cov=37/63	polymorphism_frequency=9.901e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=37/64
RA	484	.	NC_000913	1854927	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=282.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/49	major_frequency=9.881e-01	minor_base=G	minor_cov=0/1	new_cov=34/49	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	485	.	NC_000913	1860532	0	G	A	consensus_score=251.4	frequency=1	major_base=A	major_cov=41/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/30
RA	486	.	NC_000913	1864475	0	G	A	consensus_score=255.6	frequency=1	major_base=A	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	487	.	NC_000913	1868152	0	G	A	consensus_score=304.4	frequency=1	major_base=A	major_cov=36/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/47
RA	488	.	NC_000913	1898386	0	G	A	consensus_score=267.6	frequency=1	major_base=A	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	489	.	NC_000913	1901679	0	G	A	consensus_score=279.0	frequency=1	major_base=A	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	490	.	NC_000913	1913979	0	C	T	consensus_score=205.4	frequency=1	major_base=T	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	491	.	NC_000913	1919587	0	G	A	consensus_score=277.4	frequency=1	major_base=A	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	492	.	NC_000913	1921166	0	C	T	consensus_score=342.7	frequency=1	major_base=T	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	493	.	NC_000913	1922815	0	C	A	bias_e_value=58237.4	bias_p_value=0.0125467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.9	fisher_strand_p_value=0.00170087	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=25/45	major_frequency=7.143e-01	minor_base=A	minor_cov=20/8	new_cov=20/8	polymorphism_frequency=2.857e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=25/45	total_cov=45/53
RA	494	.	NC_000913	1923685	0	C	T	consensus_score=361.2	frequency=1	major_base=T	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	495	.	NC_000913	1924639	0	C	T	consensus_score=305.3	frequency=1	major_base=T	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	496	.	NC_000913	1931811	0	C	T	bias_e_value=3545340	bias_p_value=0.76381	consensus_score=258.1	fisher_strand_p_value=0.397059	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/26	major_frequency=9.853e-01	minor_base=C	minor_cov=0/1	new_cov=41/26	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=41/27
RA	497	.	NC_000913	1937945	0	C	T	consensus_score=274.4	frequency=1	major_base=T	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	498	.	NC_000913	1978243	0	G	T	consensus_score=393.6	frequency=1	major_base=T	major_cov=55/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/53
RA	499	.	NC_000913	2003264	0	C	T	consensus_score=316.2	frequency=1	major_base=T	major_cov=32/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/55
RA	500	.	NC_000913	2008426	0	C	T	consensus_score=292.5	frequency=1	major_base=T	major_cov=26/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/55
RA	501	.	NC_000913	2010262	0	G	A	consensus_score=345.5	frequency=1	major_base=A	major_cov=44/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	502	.	NC_000913	2032423	0	G	A	bias_e_value=3914710	bias_p_value=0.843388	consensus_score=252.3	fisher_strand_p_value=0.495434	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=37/34	major_frequency=9.726e-01	minor_base=C	minor_cov=2/0	new_cov=37/34	polymorphism_frequency=9.726e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	503	.	NC_000913	2038532	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=417.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=56/56	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=56/56	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/56
RA	504	.	NC_000913	2128907	0	G	A	consensus_score=317.9	frequency=1	major_base=A	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	505	.	NC_000913	2173363	0	C	.	consensus_score=266.9	frequency=1	major_base=.	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	506	.	NC_000913	2173364	0	C	.	consensus_score=266.9	frequency=1	major_base=.	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	507	.	NC_000913	2239994	0	G	T	bias_e_value=0.0163347	bias_p_value=3.51917e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.6	fisher_strand_p_value=1.48944e-10	frequency=2.268e-01	ks_quality_p_value=1	major_base=G	major_cov=55/20	major_frequency=7.732e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.268e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=55/20	total_cov=55/42
RA	508	.	NC_000913	2242121	0	A	G	bias_e_value=3076660	bias_p_value=0.662838	consensus_score=276.9	fisher_strand_p_value=0.30137	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=21/51	major_frequency=9.863e-01	minor_base=A	minor_cov=1/0	new_cov=21/51	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=22/51
RA	509	.	NC_000913	2288418	0	G	T	bias_e_value=2.52191	bias_p_value=5.43322e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.4	fisher_strand_p_value=2.96341e-08	frequency=2.756e-01	ks_quality_p_value=1	major_base=G	major_cov=43/49	major_frequency=7.244e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.756e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=43/49	total_cov=44/84
RA	510	.	NC_000913	2365779	0	T	G	bias_e_value=0.00044926	bias_p_value=9.67888e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=322.5	fisher_strand_p_value=3.53658e-12	frequency=2.075e-01	ks_quality_p_value=1	major_base=T	major_cov=79/47	major_frequency=7.925e-01	minor_base=G	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.075e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=79/47	total_cov=79/80
RA	511	.	NC_000913	2397444	0	G	A	consensus_score=356.8	frequency=1	major_base=A	major_cov=48/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	512	.	NC_000913	2422545	0	G	A	consensus_score=302.4	frequency=1	major_base=A	major_cov=51/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/33
RA	513	.	NC_000913	2477265	0	A	C	bias_e_value=1.37274e-08	bias_p_value=2.95745e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.0	fisher_strand_p_value=7.76345e-17	frequency=3.158e-01	ks_quality_p_value=1	major_base=A	major_cov=3/49	major_frequency=6.842e-01	minor_base=C	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.158e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=3/49	total_cov=27/49
RA	514	.	NC_000913	2490240	0	G	T	bias_e_value=149.941	bias_p_value=3.23033e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.0	fisher_strand_p_value=2.31104e-06	frequency=2.197e-01	ks_quality_p_value=1	major_base=G	major_cov=44/59	major_frequency=7.803e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.197e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=44/59	total_cov=44/88
RA	515	.	NC_000913	2520477	0	G	A	bias_e_value=4026780	bias_p_value=0.867532	consensus_score=409.4	fisher_strand_p_value=0.531653	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=74/44	major_frequency=9.833e-01	minor_base=C	minor_cov=2/0	new_cov=74/44	polymorphism_frequency=9.833e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=76/44
RA	516	.	NC_000913	2593230	0	C	T	bias_e_value=3882580	bias_p_value=0.836465	consensus_score=370.7	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/50	major_frequency=9.905e-01	minor_base=G	minor_cov=0/1	new_cov=54/50	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/51
RA	517	.	NC_000913	2603685	0	C	T	consensus_score=303.0	frequency=1	major_base=T	major_cov=57/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/29
RA	518	.	NC_000913	2620332	0	C	T	bias_e_value=3912830	bias_p_value=0.842982	consensus_score=318.5	fisher_strand_p_value=0.495091	frequency=1	ks_quality_p_value=0.999527	major_base=T	major_cov=45/46	major_frequency=9.785e-01	minor_base=G	minor_cov=0/2	new_cov=45/46	polymorphism_frequency=9.785e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=45/48
RA	519	.	NC_000913	2621166	0	C	T	consensus_score=426.2	frequency=1	major_base=T	major_cov=41/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/78
RA	520	.	NC_000913	2629883	0	C	T	bias_e_value=4641000	bias_p_value=0.999859	consensus_score=455.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983231	major_base=T	major_cov=56/74	major_frequency=9.924e-01	minor_base=G	minor_cov=0/1	new_cov=56/74	polymorphism_frequency=9.924e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/0	total_cov=56/75
RA	521	.	NC_000913	2633906	0	C	T	consensus_score=416.0	frequency=1	major_base=T	major_cov=54/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/60
RA	522	.	NC_000913	2635195	0	C	T	bias_e_value=3848630	bias_p_value=0.829151	consensus_score=368.4	fisher_strand_p_value=0.475728	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/48	major_frequency=9.903e-01	minor_base=G	minor_cov=0/1	new_cov=54/48	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/49
RA	523	.	NC_000913	2659219	0	C	T	consensus_score=286.5	frequency=1	major_base=T	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	524	.	NC_000913	2690434	0	G	T	bias_e_value=66.7984	bias_p_value=1.43911e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.8	fisher_strand_p_value=9.69314e-07	frequency=2.477e-01	ks_quality_p_value=1	major_base=G	major_cov=39/43	major_frequency=7.523e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.477e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=39/43	total_cov=39/70
RA	525	.	NC_000913	2718323	0	C	T	consensus_score=349.2	frequency=1	major_base=T	major_cov=54/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/43
RA	526	.	NC_000913	2725642	0	C	T	consensus_score=424.5	frequency=1	major_base=T	major_cov=69/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/49
RA	527	.	NC_000913	2726122	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=258.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/40	major_frequency=9.867e-01	minor_base=G	minor_cov=0/1	new_cov=34/40	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/41
RA	528	.	NC_000913	2746691	0	C	T	consensus_score=311.1	frequency=1	major_base=T	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	529	.	NC_000913	2748463	0	C	T	consensus_score=448.3	frequency=1	major_base=T	major_cov=64/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/58
RA	530	.	NC_000913	2750150	0	C	T	consensus_score=275.4	frequency=1	major_base=T	major_cov=31/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/48
RA	531	.	NC_000913	2752143	0	C	T	consensus_score=319.8	frequency=1	major_base=T	major_cov=45/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/41
RA	532	.	NC_000913	2767443	0	C	A	bias_e_value=7.71332e-07	bias_p_value=1.66176e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.3	fisher_strand_p_value=4.89464e-15	frequency=3.070e-01	ks_quality_p_value=1	major_base=C	major_cov=21/58	major_frequency=6.930e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.070e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=21/58	total_cov=58/58
RA	533	.	NC_000913	2767445	0	C	A	bias_e_value=4.07669e-12	bias_p_value=8.78284e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.1	fisher_strand_p_value=1.89229e-20	frequency=3.879e-01	ks_quality_p_value=1	major_base=C	major_cov=13/58	major_frequency=6.121e-01	minor_base=A	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=3.879e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=13/58	total_cov=58/58
RA	534	.	NC_000913	2767447	0	C	A	bias_e_value=0.000108725	bias_p_value=2.34238e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=267.4	fisher_strand_p_value=8.12227e-13	frequency=2.677e-01	ks_quality_p_value=1	major_base=C	major_cov=32/61	major_frequency=7.323e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.677e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=32/61	total_cov=66/61
RA	535	.	NC_000913	2771139	0	G	T	bias_e_value=1.44356	bias_p_value=3.11002e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.5	fisher_strand_p_value=1.64343e-08	frequency=2.109e-01	ks_quality_p_value=1	major_base=G	major_cov=56/45	major_frequency=7.891e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.109e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=56/45	total_cov=56/72
RA	536	.	NC_000913	2990480	0	C	A	bias_e_value=4.83511e-06	bias_p_value=1.04168e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=314.5	fisher_strand_p_value=3.24939e-14	frequency=2.824e-01	ks_quality_p_value=1	major_base=C	major_cov=53/69	major_frequency=7.176e-01	minor_base=A	minor_cov=48/0	new_cov=48/0	polymorphism_frequency=2.824e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=53/69	total_cov=101/69
RA	537	.	NC_000913	3054886	0	G	T	bias_e_value=0.000218854	bias_p_value=4.715e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.8	fisher_strand_p_value=1.6771e-12	frequency=3.056e-01	ks_quality_p_value=1	major_base=G	major_cov=24/51	major_frequency=6.944e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.056e-01	polymorphism_score=27.4	prediction=polymorphism	ref_cov=24/51	total_cov=58/51
RA	538	.	NC_000913	3054894	0	G	T	bias_e_value=0.0049215	bias_p_value=1.06029e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.5	fisher_strand_p_value=4.26183e-11	frequency=3.486e-01	ks_quality_p_value=1	major_base=G	major_cov=22/49	major_frequency=6.514e-01	minor_base=T	minor_cov=36/2	new_cov=36/2	polymorphism_frequency=3.486e-01	polymorphism_score=41.0	prediction=polymorphism	ref_cov=22/49	total_cov=59/51
RA	539	.	NC_000913	3054949	0	G	A	bias_e_value=0.0410449	bias_p_value=8.84274e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.8	fisher_strand_p_value=3.90159e-10	frequency=2.653e-01	ks_quality_p_value=1	major_base=G	major_cov=24/48	major_frequency=7.347e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.653e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=24/48	total_cov=50/48
RA	540	.	NC_000913	3157420	0	C	A	bias_e_value=0.000269435	bias_p_value=5.80473e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=314.9	fisher_strand_p_value=2.08067e-12	frequency=2.276e-01	ks_quality_p_value=1	major_base=C	major_cov=40/72	major_frequency=7.724e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.276e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=40/72	total_cov=73/72
RA	541	.	NC_000913	3168264	0	G	T	bias_e_value=0.861111	bias_p_value=1.85518e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=360.7	fisher_strand_p_value=9.52893e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=64/68	major_frequency=8.000e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.000e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=64/68	total_cov=64/101
RA	542	.	NC_000913	3226224	0	G	T	bias_e_value=0.000279863	bias_p_value=6.02939e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.4	fisher_strand_p_value=2.16426e-12	frequency=2.866e-01	ks_quality_p_value=1	major_base=G	major_cov=66/46	major_frequency=7.134e-01	minor_base=T	minor_cov=1/44	new_cov=1/44	polymorphism_frequency=2.866e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=66/46	total_cov=68/90
RA	543	.	NC_000913	3268247	0	G	T	bias_e_value=3.20765e-06	bias_p_value=6.91057e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=476.2	fisher_strand_p_value=2.12756e-14	frequency=2.057e-01	ks_quality_p_value=1	major_base=G	major_cov=97/69	major_frequency=7.943e-01	minor_base=T	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=2.057e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=97/69	total_cov=97/112
RA	544	.	NC_000913	3268970	0	A	G	bias_e_value=3705500	bias_p_value=0.798314	consensus_score=704.3	fisher_strand_p_value=0.436464	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=102/78	major_frequency=9.945e-01	minor_base=A	minor_cov=0/1	new_cov=102/78	polymorphism_frequency=9.945e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=102/79
RA	545	.	NC_000913	3269943	0	G	T	bias_e_value=30.2969	bias_p_value=6.52718e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.7	fisher_strand_p_value=4.15937e-07	frequency=2.375e-01	ks_quality_p_value=1	major_base=G	major_cov=23/38	major_frequency=7.625e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.375e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=23/38	total_cov=43/39
RA	546	.	NC_000913	3431396	0	C	A	bias_e_value=4.09931	bias_p_value=8.83158e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.7	fisher_strand_p_value=4.95597e-08	frequency=2.131e-01	ks_quality_p_value=1	major_base=C	major_cov=44/52	major_frequency=7.869e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.131e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=44/52	total_cov=70/52
RA	547	.	NC_000913	3433680	0	C	A	bias_e_value=0.00352557	bias_p_value=7.59552e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.8	fisher_strand_p_value=3.01097e-11	frequency=2.273e-01	ks_quality_p_value=1	major_base=C	major_cov=51/68	major_frequency=7.727e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.273e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=51/68	total_cov=86/69
RA	548	.	NC_000913	3486205	0	C	A	consensus_score=407.4	frequency=1	major_base=A	major_cov=69/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/47
RA	549	.	NC_000913	3543220	0	A	C	bias_e_value=3.53585	bias_p_value=7.61764e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.0	fisher_strand_p_value=4.23751e-08	frequency=2.254e-01	ks_quality_p_value=1	major_base=A	major_cov=58/52	major_frequency=7.746e-01	minor_base=C	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.254e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=58/52	total_cov=93/52
RA	550	.	NC_000913	3560455	1	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=505.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=61/73	major_frequency=9.926e-01	minor_base=A	minor_cov=0/1	new_cov=61/73	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/74
RA	551	.	NC_000913	3577691	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=420.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=60/52	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=60/52	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=61/52
RA	552	.	NC_000913	3741871	0	G	T	bias_e_value=0.108932	bias_p_value=2.34683e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.4	fisher_strand_p_value=1.08437e-09	frequency=2.254e-01	ks_quality_p_value=1	major_base=G	major_cov=60/50	major_frequency=7.746e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.254e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=60/50	total_cov=60/82
RA	553	.	NC_000913	3768435	0	C	A	bias_e_value=4.77514e-10	bias_p_value=1.02876e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=586.5	fisher_strand_p_value=2.47657e-18	frequency=2.101e-01	ks_quality_p_value=1	major_base=C	major_cov=69/119	major_frequency=7.899e-01	minor_base=A	minor_cov=50/0	new_cov=50/0	polymorphism_frequency=2.101e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=69/119	total_cov=119/119
RA	554	.	NC_000913	3776287	0	G	A	consensus_score=564.2	frequency=1	major_base=A	major_cov=100/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=100/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=100/58
RA	555	.	NC_000913	3791594	0	G	A	bias_e_value=2429240	bias_p_value=0.523357	consensus_score=481.0	fisher_strand_p_value=0.203371	frequency=1	ks_quality_p_value=0.987921	major_base=A	major_cov=56/70	major_frequency=9.844e-01	minor_base=G	minor_cov=2/0	new_cov=56/70	polymorphism_frequency=9.844e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=2/0	total_cov=59/70
RA	556	.	NC_000913	3843750	0	C	A	bias_e_value=0.0146448	bias_p_value=3.15509e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=323.9	fisher_strand_p_value=1.32894e-10	frequency=2.843e-01	ks_quality_p_value=1	major_base=C	major_cov=89/57	major_frequency=7.157e-01	minor_base=A	minor_cov=58/0	new_cov=58/0	polymorphism_frequency=2.843e-01	polymorphism_score=24.8	prediction=polymorphism	ref_cov=89/57	total_cov=147/57
RA	557	.	NC_000913	3852978	0	G	A	consensus_score=433.3	frequency=1	major_base=A	major_cov=61/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/58
RA	558	.	NC_000913	3906152	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=509.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999891	major_base=A	major_cov=65/70	major_frequency=9.926e-01	minor_base=G	minor_cov=0/1	new_cov=65/70	polymorphism_frequency=9.926e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/1	total_cov=65/71
RA	559	.	NC_000913	3911533	0	C	A	bias_e_value=1.96232e-09	bias_p_value=4.22763e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.6	fisher_strand_p_value=1.05451e-17	frequency=3.473e-01	ks_quality_p_value=1	major_base=C	major_cov=42/67	major_frequency=6.527e-01	minor_base=A	minor_cov=58/0	new_cov=58/0	polymorphism_frequency=3.473e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=42/67	total_cov=100/67
RA	560	.	NC_000913	3913479	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=469.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=82/48	major_frequency=9.924e-01	minor_base=G	minor_cov=1/0	new_cov=82/48	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=83/48
RA	561	.	NC_000913	3917605	0	G	A	consensus_score=376.7	frequency=1	major_base=A	major_cov=43/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	562	.	NC_000913	3922570	0	G	A	consensus_score=606.9	frequency=1	major_base=A	major_cov=101/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=101/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=101/63
RA	563	.	NC_000913	3928008	0	G	A	consensus_score=358.2	frequency=1	major_base=A	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	564	.	NC_000913	3959071	0	G	A	bias_e_value=3787150	bias_p_value=0.815906	consensus_score=522.1	fisher_strand_p_value=0.458333	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=65/78	major_frequency=9.931e-01	minor_base=C	minor_cov=1/0	new_cov=65/78	polymorphism_frequency=9.931e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=66/79
RA	565	.	NC_000913	3959203	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=486.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=50/84	major_frequency=9.926e-01	minor_base=G	minor_cov=0/1	new_cov=50/84	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=50/85
RA	566	.	NC_000913	3966927	0	G	A	bias_e_value=3785740	bias_p_value=0.815602	consensus_score=383.8	fisher_strand_p_value=0.457944	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/58	major_frequency=9.907e-01	minor_base=C	minor_cov=1/0	new_cov=48/58	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=49/59
RA	567	.	NC_000913	3970253	0	G	T	bias_e_value=0.000929387	bias_p_value=2.00228e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.2	fisher_strand_p_value=7.52369e-12	frequency=2.593e-01	ks_quality_p_value=1	major_base=G	major_cov=61/39	major_frequency=7.407e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.593e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=61/39	total_cov=62/74
RA	568	.	NC_000913	3975757	0	G	A	bias_e_value=3719040	bias_p_value=0.801231	consensus_score=446.7	fisher_strand_p_value=0.44	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/70	major_frequency=9.920e-01	minor_base=C	minor_cov=1/0	new_cov=54/70	polymorphism_frequency=9.920e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/70
RA	569	.	NC_000913	3985381	0	G	A	consensus_score=376.4	frequency=1	major_base=A	major_cov=49/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/52
RA	570	.	NC_000913	3985943	0	G	A	consensus_score=621.3	frequency=1	major_base=A	major_cov=105/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=105/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=105/65
RA	571	.	NC_000913	3994609	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=487.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=62/71	major_frequency=9.925e-01	minor_base=G	minor_cov=0/1	new_cov=62/71	polymorphism_frequency=9.925e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/72
RA	572	.	NC_000913	4028896	0	G	A	consensus_score=283.7	frequency=1	major_base=A	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	573	.	NC_000913	4056166	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=429.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=58/58	major_frequency=9.915e-01	minor_base=G	minor_cov=1/0	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=59/58
RA	574	.	NC_000913	4057198	0	G	A	consensus_score=457.7	frequency=1	major_base=A	major_cov=65/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/60
RA	575	.	NC_000913	4060213	0	G	A	consensus_score=453.7	frequency=1	major_base=A	major_cov=84/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=84/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=84/44
RA	576	.	NC_000913	4068390	0	G	A	consensus_score=428.4	frequency=1	major_base=A	major_cov=57/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/59
RA	577	.	NC_000913	4074572	0	C	A	bias_e_value=1.87573	bias_p_value=4.04108e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.0	fisher_strand_p_value=2.16712e-08	frequency=2.701e-01	ks_quality_p_value=1	major_base=C	major_cov=55/45	major_frequency=7.299e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.701e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=55/45	total_cov=92/45
RA	578	.	NC_000913	4091974	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=387.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=68/42	major_frequency=9.910e-01	minor_base=C	minor_cov=1/0	new_cov=68/42	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=70/42
RA	579	.	NC_000913	4092637	0	G	A	consensus_score=500.9	frequency=1	major_base=A	major_cov=86/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=86/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=86/55
RA	580	.	NC_000913	4095578	0	G	A	consensus_score=419.4	frequency=1	major_base=A	major_cov=58/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/58
RA	581	.	NC_000913	4101843	0	G	A	bias_e_value=4638400	bias_p_value=0.999299	consensus_score=520.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.962784	major_base=A	major_cov=84/68	major_frequency=9.935e-01	minor_base=C	minor_cov=1/0	new_cov=84/68	polymorphism_frequency=9.935e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=85/68
RA	582	.	NC_000913	4114396	0	G	A	consensus_score=559.4	frequency=1	major_base=A	major_cov=85/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/69
RA	583	.	NC_000913	4136467	0	A	C	bias_e_value=10.4902	bias_p_value=2.26002e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.0	fisher_strand_p_value=1.34342e-07	frequency=2.174e-01	ks_quality_p_value=1	major_base=A	major_cov=26/46	major_frequency=7.826e-01	minor_base=C	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.174e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=26/46	total_cov=48/46
RA	584	.	NC_000913	4146389	1	.	T	bias_e_value=4595530	bias_p_value=0.990063	consensus_score=343.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.86238	major_base=T	major_cov=59/35	major_frequency=9.691e-01	minor_base=.	minor_cov=2/1	new_cov=59/35	polymorphism_frequency=9.691e-01	polymorphism_score=5.4	prediction=consensus	ref_cov=2/1	total_cov=61/36
RA	585	.	NC_000913	4261040	0	C	A	bias_e_value=2.27873e-06	bias_p_value=4.90931e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=415.9	fisher_strand_p_value=1.49519e-14	frequency=2.419e-01	ks_quality_p_value=1	major_base=C	major_cov=58/83	major_frequency=7.581e-01	minor_base=A	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=2.419e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=58/83	total_cov=103/83
RA	586	.	NC_000913	4296268	0	T	C	bias_e_value=3908610	bias_p_value=0.842074	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.4	fisher_strand_p_value=0.493568	frequency=2.927e-01	ks_quality_p_value=1	major_base=T	major_cov=18/11	major_frequency=7.073e-01	minor_base=C	minor_cov=9/3	new_cov=9/3	polymorphism_frequency=2.927e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=18/11	total_cov=27/14
RA	587	.	NC_000913	4296380	1	.	C	bias_e_value=402760	bias_p_value=0.0867709	consensus_score=205.6	fisher_strand_p_value=0.0171237	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=46/14	major_frequency=9.524e-01	minor_base=T	minor_cov=0/3	new_cov=46/14	polymorphism_frequency=9.524e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=0/0	total_cov=46/17
RA	588	.	NC_000913	4296380	2	.	G	consensus_score=218.4	frequency=1	major_base=G	major_cov=46/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/17
RA	589	.	NC_000913	4406302	0	C	A	bias_e_value=0.0108942	bias_p_value=2.34706e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=309.6	fisher_strand_p_value=9.75899e-11	frequency=2.357e-01	ks_quality_p_value=1	major_base=C	major_cov=45/62	major_frequency=7.643e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.357e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=45/62	total_cov=78/62
RA	590	.	NC_000913	4542683	0	T	.	bias_e_value=1079720	bias_p_value=0.232615	consensus_score=920.7	fisher_strand_p_value=0.0613599	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=109/69	major_frequency=9.834e-01	minor_base=T	minor_cov=0/3	new_cov=109/69	polymorphism_frequency=9.834e-01	polymorphism_score=2.1	prediction=consensus	ref_cov=0/3	total_cov=109/72
MC	591	.	NC_000913	257908	258683	768	0	left_inside_cov=0	left_outside_cov=110	right_inside_cov=1	right_outside_cov=111
MC	592	.	NC_000913	1196328	1211436	0	0	left_inside_cov=21	left_outside_cov=22	right_inside_cov=21	right_outside_cov=22
MC	593	.	NC_000913	1294035	1294175	0	0	left_inside_cov=0	left_outside_cov=71	right_inside_cov=1	right_outside_cov=72
MC	594	.	NC_000913	1303073	1303084	0	0	left_inside_cov=0	left_outside_cov=97	right_inside_cov=1	right_outside_cov=99
MC	595	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=92	right_inside_cov=0	right_outside_cov=120
MC	596	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=76	right_inside_cov=0	right_outside_cov=76
MC	597	.	NC_000913	3423848	3424431	381	193	left_inside_cov=21	left_outside_cov=22	right_inside_cov=21	right_outside_cov=22
MC	598	.	NC_000913	3682261	3682294	0	0	left_inside_cov=0	left_outside_cov=141	right_inside_cov=1	right_outside_cov=145
JC	599	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=59	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=299	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=260	max_min_left=149	max_min_left_minus=149	max_min_left_plus=140	max_min_right=148	max_min_right_minus=147	max_min_right_plus=148	max_pos_hash_score=598	max_right=291	max_right_minus=290	max_right_plus=291	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103
JC	600	.	NC_000913	57276	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=39	coverage_plus=63	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__57276__1__NC_000913__382590__-1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=295	max_min_left=140	max_min_left_minus=133	max_min_left_plus=140	max_min_right=142	max_min_right_minus=139	max_min_right_plus=142	max_pos_hash_score=598	max_right=296	max_right_minus=296	max_right_plus=286	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=102
JC	601	.	NC_000913	57280	-1	NC_000913	381260	1	0	alignment_overlap=0	coverage_minus=40	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__57280__-1__NC_000913__381260__1__0____300__300__0__1	max_left=299	max_left_minus=289	max_left_plus=299	max_min_left=145	max_min_left_minus=145	max_min_left_plus=138	max_min_right=148	max_min_right_minus=148	max_min_right_plus=143	max_pos_hash_score=598	max_right=297	max_right_minus=297	max_right_plus=287	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.87	new_junction_read_count=86	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=83
JC	602	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=43	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=282	max_min_left=145	max_min_left_minus=145	max_min_left_plus=143	max_min_right=144	max_min_right_minus=136	max_min_right_plus=144	max_pos_hash_score=582	max_right=285	max_right_minus=285	max_right_plus=267	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=107
JC	603	.	NC_000913	279163	1	NC_000913	2666074	1	0	alignment_overlap=0	coverage_minus=63	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__279163__1__NC_000913__2666074__1__0____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=271	max_min_left=149	max_min_left_minus=149	max_min_left_plus=145	max_min_right=143	max_min_right_minus=140	max_min_right_plus=143	max_pos_hash_score=598	max_right=298	max_right_minus=275	max_right_plus=298	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.29	new_junction_read_count=127	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=125
JC	604	.	NC_000913	291401	-1	NC_000913	2666082	-1	0	alignment_overlap=1	coverage_minus=61	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__291402__-1__NC_000913__2666082__-1__1____300__300__1__0	max_left=278	max_left_minus=277	max_left_plus=278	max_min_left=148	max_min_left_minus=148	max_min_left_plus=147	max_min_right=147	max_min_right_minus=147	max_min_right_plus=139	max_pos_hash_score=596	max_right=295	max_right_minus=286	max_right_plus=295	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.08	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=105
JC	605	.	NC_000913	381260	1	NC_000913	382183	-1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=299	key=NC_000913__381260__1__NC_000913__382183__-1__0____300__300__1__1	max_left=297	max_left_minus=297	max_left_plus=263	max_min_left=145	max_min_left_minus=137	max_min_left_plus=145	max_min_right=137	max_min_right_minus=137	max_min_right_plus=122	max_pos_hash_score=598	max_right=275	max_right_minus=275	max_right_plus=265	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.41	new_junction_read_count=40	polymorphism_frequency=NA	pos_hash_score=31	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=39
JC	606	.	NC_000913	381260	1	NC_000913	1105376	1	0	alignment_overlap=1	coverage_minus=49	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__381260__1__NC_000913__1105375__1__1____300__300__1__0	max_left=296	max_left_minus=296	max_left_plus=295	max_min_left=146	max_min_left_minus=146	max_min_left_plus=116	max_min_right=137	max_min_right_minus=137	max_min_right_plus=122	max_pos_hash_score=596	max_right=295	max_right_minus=295	max_right_plus=294	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.87	new_junction_read_count=86	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	607	.	NC_000913	382179	1	NC_000913	382590	-1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=13	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=297	key=NC_000913__382177__1__NC_000913__382590__-1__2____300__300__1__1	max_left=251	max_left_minus=229	max_left_plus=251	max_min_left=145	max_min_left_minus=145	max_min_left_plus=140	max_min_right=128	max_min_right_minus=128	max_min_right_plus=106	max_pos_hash_score=594	max_right=289	max_right_minus=289	max_right_plus=219	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.24	new_junction_read_count=24	polymorphism_frequency=NA	pos_hash_score=21	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	608	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=18	coverage_plus=13	flanking_left=300	flanking_right=300	frequency=2.961e-01	junction_possible_overlap_registers=297	key=NC_000913__566774__-1__NC_000913__568034__1__2____300__300__0__0	max_left=225	max_left_minus=225	max_left_plus=225	max_min_left=148	max_min_left_minus=146	max_min_left_plus=148	max_min_right=145	max_min_right_minus=145	max_min_right_plus=143	max_pos_hash_score=594	max_right=185	max_right_minus=176	max_right_plus=185	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.40	new_junction_read_count=39	polymorphism_frequency=2.961e-01	pos_hash_score=23	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=2	side_1_possible_overlap_registers=299	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=297	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=31
JC	609	.	NC_000913	568449	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__568449__1__NC_000913__1469240__-1__0____300__300__0__1	max_left=295	max_left_minus=259	max_left_plus=295	max_min_left=148	max_min_left_minus=148	max_min_left_plus=132	max_min_right=137	max_min_right_minus=134	max_min_right_plus=137	max_pos_hash_score=598	max_right=297	max_right_minus=297	max_right_plus=289	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.89	new_junction_read_count=88	polymorphism_frequency=9.886e-01	pos_hash_score=71	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=86
JC	610	.	NC_000913	568453	-1	NC_000913	1467910	1	0	alignment_overlap=1	coverage_minus=61	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__568454__-1__NC_000913__1467910__1__1____300__300__0__1	max_left=286	max_left_minus=286	max_left_plus=267	max_min_left=148	max_min_left_minus=148	max_min_left_plus=141	max_min_right=148	max_min_right_minus=146	max_min_right_plus=148	max_pos_hash_score=596	max_right=293	max_right_minus=293	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.25	new_junction_read_count=123	polymorphism_frequency=9.918e-01	pos_hash_score=82	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=121
JC	611	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=7.965e-02	junction_possible_overlap_registers=221	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=156	max_left_minus=156	max_left_plus=25	max_min_left=68	max_min_left_minus=68	max_min_left_plus=25	max_min_right=55	max_min_right_minus=55	max_min_right_plus=0	max_pos_hash_score=442	max_right=197	max_right_minus=154	max_right_plus=197	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=7.965e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=78	side_1_possible_overlap_registers=299	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=221	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=3
JC	612	.	NC_000913	780629	-1	NC_000913	780919	1	0	alignment_overlap=76	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.226e-01	junction_possible_overlap_registers=223	key=NC_000913__780629__-1__NC_000913__780843__1__76____300__300__0__0	max_left=212	max_left_minus=212	max_left_plus=128	max_min_left=78	max_min_left_minus=69	max_min_left_plus=78	max_min_right=92	max_min_right_minus=66	max_min_right_plus=92	max_pos_hash_score=446	max_right=189	max_right_minus=155	max_right_plus=189	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.12	new_junction_read_count=9	polymorphism_frequency=1.226e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=76	side_1_possible_overlap_registers=299	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=223	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=9
JC	613	.	NC_000913	1105380	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=71	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1105380__-1__NC_000913__1467910__1__0____300__300__0__1	max_left=299	max_left_minus=299	max_left_plus=294	max_min_left=146	max_min_left_minus=146	max_min_left_plus=140	max_min_right=150	max_min_right_minus=150	max_min_right_plus=149	max_pos_hash_score=598	max_right=297	max_right_minus=297	max_right_plus=293	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.05	new_junction_read_count=104	polymorphism_frequency=9.903e-01	pos_hash_score=70	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=101
JC	614	.	NC_000913	1294034	-1	NC_000913	1294176	1	0	alignment_overlap=10	coverage_minus=32	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__1294034__-1__NC_000913__1294166__1__10____300__300__0__0	max_left=278	max_left_minus=276	max_left_plus=278	max_min_left=141	max_min_left_minus=117	max_min_left_plus=141	max_min_right=144	max_min_right_minus=127	max_min_right_plus=144	max_pos_hash_score=578	max_right=288	max_right_minus=288	max_right_plus=262	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.74	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71
JC	615	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=66	coverage_plus=54	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=293	max_left_plus=294	max_min_left=138	max_min_left_minus=138	max_min_left_plus=111	max_min_right=144	max_min_right_minus=139	max_min_right_plus=144	max_pos_hash_score=590	max_right=295	max_right_minus=293	max_right_plus=295	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.25	new_junction_read_count=122	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=120
JC	616	.	NC_000913	1303072	-1	NC_000913	1303085	1	0	alignment_overlap=1	coverage_minus=48	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__1303072__-1__NC_000913__1303084__1__1____300__300__0__0	max_left=293	max_left_minus=293	max_left_plus=284	max_min_left=148	max_min_left_minus=148	max_min_left_plus=142	max_min_right=147	max_min_right_minus=116	max_min_right_plus=147	max_pos_hash_score=596	max_right=291	max_right_minus=291	max_right_plus=291	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.99	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=298	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=94
JC	617	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=295	max_left_minus=284	max_left_plus=295	max_min_left=143	max_min_left_minus=132	max_min_left_plus=143	max_min_right=133	max_min_right_minus=130	max_min_right_plus=133	max_pos_hash_score=598	max_right=296	max_right_minus=296	max_right_plus=287	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=92	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90
JC	618	.	NC_000913	1411924	-1	NC_000913	1434985	1	0	alignment_overlap=26	coverage_minus=38	coverage_plus=36	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=273	key=NC_000913__1411924__-1__NC_000913__1434959__1__26____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=243	max_min_left=125	max_min_left_minus=125	max_min_left_plus=112	max_min_right=137	max_min_right_minus=134	max_min_right_plus=137	max_pos_hash_score=546	max_right=271	max_right_minus=271	max_right_plus=271	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.85	new_junction_read_count=77	polymorphism_frequency=8.641e-01	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.09	side_1_overlap=26	side_1_possible_overlap_registers=299	side_1_read_count=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.18	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=16	side_2_redundant=0	total_non_overlap_reads=74
JC	619	.	NC_000913	1469240	-1	NC_000913	1792772	1	0	alignment_overlap=2	coverage_minus=38	coverage_plus=26	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=297	key=NC_000913__1469240__-1__NC_000913__1792770__1__2____300__300__1__0	max_left=295	max_left_minus=290	max_left_plus=295	max_min_left=148	max_min_left_minus=133	max_min_left_plus=148	max_min_right=143	max_min_right_minus=142	max_min_right_plus=143	max_pos_hash_score=594	max_right=295	max_right_minus=295	max_right_plus=251	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.66	new_junction_read_count=65	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=64
JC	620	.	NC_000913	1651548	-1	NC_000913	1792776	-1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1651548__-1__NC_000913__1792776__-1__0____300__300__1__0	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=139	max_min_left_minus=139	max_min_left_plus=124	max_min_right=150	max_min_right_minus=141	max_min_right_plus=150	max_pos_hash_score=598	max_right=295	max_right_minus=295	max_right_plus=238	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.78	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	621	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=55	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____300__300__1__0	max_left=289	max_left_minus=285	max_left_plus=289	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=146	max_min_right_minus=146	max_min_right_plus=145	max_pos_hash_score=596	max_right=297	max_right_minus=277	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=101
JC	622	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____300__300__1__0	max_left=293	max_left_minus=277	max_left_plus=293	max_min_left=147	max_min_left_minus=147	max_min_left_plus=147	max_min_right=150	max_min_right_minus=150	max_min_right_plus=149	max_pos_hash_score=598	max_right=298	max_right_minus=298	max_right_plus=287	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.11	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=107
JC	623	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=78	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=299	max_left_minus=291	max_left_plus=299	max_min_left=145	max_min_left_minus=145	max_min_left_plus=145	max_min_right=150	max_min_right_minus=145	max_min_right_plus=150	max_pos_hash_score=598	max_right=299	max_right_minus=299	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=121	polymorphism_frequency=1.000e+00	pos_hash_score=79	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=119
JC	624	.	NC_000913	2068941	1	NC_000913	2319850	1	0	alignment_overlap=0	coverage_minus=57	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2068941__1__NC_000913__2319850__1__0____300__300__1__0	max_left=279	max_left_minus=279	max_left_plus=273	max_min_left=149	max_min_left_minus=149	max_min_left_plus=149	max_min_right=140	max_min_right_minus=140	max_min_right_plus=127	max_pos_hash_score=598	max_right=296	max_right_minus=289	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=106
JC	625	.	NC_000913	2269876	1	NC_000913	2288919	1	0	alignment_overlap=1	coverage_minus=56	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__2269875__1__NC_000913__2288919__1__1____300__300__0__1	max_left=298	max_left_minus=268	max_left_plus=298	max_min_left=138	max_min_left_minus=137	max_min_left_plus=138	max_min_right=147	max_min_right_minus=147	max_min_right_plus=145	max_pos_hash_score=596	max_right=296	max_right_minus=293	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=118	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=116
JC	626	.	NC_000913	2269879	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=50	coverage_plus=74	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2269879__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=297	max_left_minus=290	max_left_plus=297	max_min_left=149	max_min_left_minus=117	max_min_left_plus=149	max_min_right=133	max_min_right_minus=133	max_min_right_plus=130	max_pos_hash_score=598	max_right=297	max_right_minus=297	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.26	new_junction_read_count=124	polymorphism_frequency=9.919e-01	pos_hash_score=75	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=124
JC	627	.	NC_000913	2288919	1	NC_000913	4536236	1	0	alignment_overlap=1	coverage_minus=49	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__2288919__1__NC_000913__4536235__1__1____300__300__1__0	max_left=290	max_left_minus=290	max_left_plus=274	max_min_left=138	max_min_left_minus=138	max_min_left_plus=123	max_min_right=146	max_min_right_minus=146	max_min_right_plus=145	max_pos_hash_score=596	max_right=287	max_right_minus=287	max_right_plus=286	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.18	new_junction_read_count=116	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=113
JC	628	.	NC_000913	2290113	-1	NC_000913	4536239	-1	0	alignment_overlap=0	coverage_minus=97	coverage_plus=67	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2290113__-1__NC_000913__4536239__-1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=283	max_min_left=149	max_min_left_minus=146	max_min_left_plus=149	max_min_right=144	max_min_right_minus=144	max_min_right_plus=140	max_pos_hash_score=598	max_right=298	max_right_minus=298	max_right_plus=287	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.69	new_junction_read_count=167	polymorphism_frequency=1.000e+00	pos_hash_score=103	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=164
JC	629	.	NC_000913	2319854	-1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2319854__-1__NC_000913__2997691__-1__0____300__300__0__1	max_left=295	max_left_minus=278	max_left_plus=295	max_min_left=148	max_min_left_minus=148	max_min_left_plus=137	max_min_right=144	max_min_right_minus=144	max_min_right_plus=137	max_pos_hash_score=598	max_right=296	max_right_minus=296	max_right_plus=287	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.89	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=86
JC	630	.	NC_000913	2357690	-1	NC_000913	2357874	1	0	alignment_overlap=25	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.587e-02	junction_possible_overlap_registers=274	key=NC_000913__2357690__-1__NC_000913__2357849__1__25____300__300__0__0	max_left=199	max_left_minus=199	max_left_plus=199	max_min_left=130	max_min_left_minus=0	max_min_left_plus=130	max_min_right=89	max_min_right_minus=89	max_min_right_plus=76	max_pos_hash_score=548	max_right=145	max_right_minus=89	max_right_plus=145	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.587e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=25	side_1_possible_overlap_registers=299	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=4
JC	631	.	NC_000913	2357730	-1	NC_000913	2357926	1	0	alignment_overlap=40	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.500e-02	junction_possible_overlap_registers=259	key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0	max_left=258	max_left_minus=164	max_left_plus=258	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=88	max_pos_hash_score=518	max_right=96	max_right_minus=96	max_right_plus=88	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.500e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=40	side_1_possible_overlap_registers=299	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=259	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=3
JC	632	.	NC_000913	2466384	-1	NC_000913	2476600	1	0	alignment_overlap=16	coverage_minus=4	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=1.292e-01	junction_possible_overlap_registers=283	key=NC_000913__2466384__-1__NC_000913__2476584__1__16____300__300__0__0	max_left=276	max_left_minus=242	max_left_plus=276	max_min_left=112	max_min_left_minus=104	max_min_left_plus=112	max_min_right=142	max_min_right_minus=142	max_min_right_plus=113	max_pos_hash_score=566	max_right=253	max_right_minus=180	max_right_plus=253	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.15	new_junction_read_count=14	polymorphism_frequency=1.292e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=16	side_1_possible_overlap_registers=299	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=14
JC	633	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=36	coverage_plus=34	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=290	max_left_minus=281	max_left_plus=290	max_min_left=141	max_min_left_minus=141	max_min_left_plus=141	max_min_right=146	max_min_right_minus=91	max_min_right_plus=146	max_pos_hash_score=582	max_right=285	max_right_minus=262	max_right_plus=285	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.78	new_junction_read_count=75	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=70
JC	634	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=6	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.370e-01	junction_possible_overlap_registers=274	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=217	max_left_minus=217	max_left_plus=167	max_min_left=110	max_min_left_minus=110	max_min_left_plus=64	max_min_right=108	max_min_right_minus=95	max_min_right_plus=108	max_pos_hash_score=548	max_right=253	max_right_minus=253	max_right_plus=233	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.13	new_junction_read_count=12	polymorphism_frequency=1.370e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=25	side_1_possible_overlap_registers=299	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=11
JC	635	.	NC_000913	2817668	-1	NC_000913	2817802	1	0	alignment_overlap=19	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.872e-02	junction_possible_overlap_registers=280	key=NC_000913__2817668__-1__NC_000913__2817783__1__19____300__300__0__0	max_left=270	max_left_minus=270	max_left_plus=154	max_min_left=114	max_min_left_minus=0	max_min_left_plus=114	max_min_right=127	max_min_right_minus=11	max_min_right_plus=127	max_pos_hash_score=560	max_right=167	max_right_minus=11	max_right_plus=167	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.872e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.29	side_1_overlap=19	side_1_possible_overlap_registers=299	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=280	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=3
JC	636	.	NC_000913	2947467	-1	NC_000913	2947688	1	0	alignment_overlap=83	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.743e-02	junction_possible_overlap_registers=216	key=NC_000913__2947467__-1__NC_000913__2947605__1__83____300__300__0__0	max_left=135	max_left_minus=135	max_left_plus=132	max_min_left=99	max_min_left_minus=0	max_min_left_plus=99	max_min_right=85	max_min_right_minus=82	max_min_right_plus=85	max_pos_hash_score=432	max_right=118	max_right_minus=82	max_right_plus=118	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.743e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=83	side_1_possible_overlap_registers=299	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=3
JC	637	.	NC_000913	3187426	-1	NC_000913	3737137	1	0	alignment_overlap=1	coverage_minus=98	coverage_plus=68	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__3187426__-1__NC_000913__3737136__1__1____300__300__1__0	max_left=297	max_left_minus=297	max_left_plus=295	max_min_left=149	max_min_left_minus=140	max_min_left_plus=149	max_min_right=148	max_min_right_minus=141	max_min_right_plus=148	max_pos_hash_score=596	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.75	new_junction_read_count=172	polymorphism_frequency=1.000e+00	pos_hash_score=103	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=166
JC	638	.	NC_000913	3270072	1	NC_000913	4137788	1	-25	alignment_overlap=-25	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=3.454e-02	junction_possible_overlap_registers=274	key=NC_000913__3270072__1__NC_000913__4137788__1__-25__CAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=53	max_min_right_minus=53	max_min_right_plus=0	max_pos_hash_score=548	max_right=53	max_right_minus=53	max_right_plus=0	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.454e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=128	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=CAGATTGTTGAGTGCGCTTTATTCA
JC	639	.	NC_000913	3648146	-1	NC_000913	3648378	1	0	alignment_overlap=58	coverage_minus=5	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.141e-02	junction_possible_overlap_registers=241	key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0	max_left=140	max_left_minus=140	max_left_plus=105	max_min_left=105	max_min_left_minus=100	max_min_left_plus=105	max_min_right=102	max_min_right_minus=102	max_min_right_plus=0	max_pos_hash_score=482	max_right=239	max_right_minus=239	max_right_plus=238	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.11	new_junction_read_count=9	polymorphism_frequency=7.141e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.46	side_1_overlap=58	side_1_possible_overlap_registers=299	side_1_read_count=144	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.48	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=7
JC	640	.	NC_000913	3682260	-1	NC_000913	3682295	1	0	alignment_overlap=2	coverage_minus=60	coverage_plus=81	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=297	key=NC_000913__3682260__-1__NC_000913__3682293__1__2____300__300__0__0	max_left=294	max_left_minus=294	max_left_plus=289	max_min_left=147	max_min_left_minus=145	max_min_left_plus=147	max_min_right=144	max_min_right_minus=144	max_min_right_plus=138	max_pos_hash_score=594	max_right=294	max_right_minus=290	max_right_plus=294	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.44	new_junction_read_count=141	polymorphism_frequency=1.000e+00	pos_hash_score=91	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=297	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=141
JC	641	.	NC_000913	3737141	-1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=63	coverage_plus=82	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__3737141__-1__NC_000913__4498181__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=295	max_min_left=145	max_min_left_minus=145	max_min_left_plus=137	max_min_right=149	max_min_right_minus=149	max_min_right_plus=143	max_pos_hash_score=598	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.49	new_junction_read_count=147	polymorphism_frequency=1.000e+00	pos_hash_score=92	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=145
JC	642	.	NC_000913	4123923	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=54	coverage_plus=79	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__4123922__1__NC_000913__4498181__1__1____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=297	max_min_left=143	max_min_left_minus=143	max_min_left_plus=137	max_min_right=146	max_min_right_minus=146	max_min_right_plus=144	max_pos_hash_score=596	max_right=292	max_right_minus=290	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.37	new_junction_read_count=135	polymorphism_frequency=1.000e+00	pos_hash_score=82	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=133
JC	643	.	NC_000913	4123927	-1	NC_000913	4499511	-1	0	alignment_overlap=1	coverage_minus=37	coverage_plus=73	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____300__300__0__1	max_left=293	max_left_minus=293	max_left_plus=283	max_min_left=140	max_min_left_minus=120	max_min_left_plus=140	max_min_right=148	max_min_right_minus=125	max_min_right_plus=148	max_pos_hash_score=596	max_right=292	max_right_minus=285	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=113	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=110
JC	644	.	NC_000913	4135180	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=57	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__4135180__1__NC_000913__4498181__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=295	max_min_left=139	max_min_left_minus=139	max_min_left_plus=116	max_min_right=141	max_min_right_minus=141	max_min_right_plus=135	max_pos_hash_score=598	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.05	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=102
JC	645	.	NC_000913	4135184	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=72	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__4135184__-1__NC_000913__4499511__-1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=295	max_min_left=144	max_min_left_minus=144	max_min_left_plus=140	max_min_right=149	max_min_right_minus=138	max_min_right_plus=149	max_pos_hash_score=598	max_right=298	max_right_minus=293	max_right_plus=298	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.22	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=113
JC	646	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=7.143e-02	junction_possible_overlap_registers=210	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=136	max_left_minus=136	max_left_plus=73	max_min_left=73	max_min_left_minus=35	max_min_left_plus=73	max_min_right=74	max_min_right_minus=74	max_min_right_plus=0	max_pos_hash_score=420	max_right=176	max_right_minus=176	max_right_plus=138	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=7.143e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=89	side_1_possible_overlap_registers=299	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=3
UN	647	.	NC_000913	15654	15654
UN	648	.	NC_000913	15663	16444
UN	649	.	NC_000913	16452	16452
UN	650	.	NC_000913	20081	20278
UN	651	.	NC_000913	224024	224499
UN	652	.	NC_000913	225164	225317
UN	653	.	NC_000913	227273	228408
UN	654	.	NC_000913	257908	258683
UN	655	.	NC_000913	270798	270798
UN	656	.	NC_000913	270808	271007
UN	657	.	NC_000913	271011	271011
UN	658	.	NC_000913	271020	271020
UN	659	.	NC_000913	274249	274862
UN	660	.	NC_000913	279442	279653
UN	661	.	NC_000913	290920	291128
UN	662	.	NC_000913	315514	316196
UN	663	.	NC_000913	316204	316204
UN	664	.	NC_000913	381521	381521
UN	665	.	NC_000913	381525	382314
UN	666	.	NC_000913	391995	392686
UN	667	.	NC_000913	526108	526108
UN	668	.	NC_000913	526110	526110
UN	669	.	NC_000913	526115	526118
UN	670	.	NC_000913	526120	526123
UN	671	.	NC_000913	526125	526127
UN	672	.	NC_000913	526129	526448
UN	673	.	NC_000913	567034	567034
UN	674	.	NC_000913	567044	567764
UN	675	.	NC_000913	567769	567769
UN	676	.	NC_000913	574869	575505
UN	677	.	NC_000913	579127	579127
UN	678	.	NC_000913	579134	579134
UN	679	.	NC_000913	579146	579146
UN	680	.	NC_000913	580115	580115
UN	681	.	NC_000913	608277	608278
UN	682	.	NC_000913	608280	608280
UN	683	.	NC_000913	608283	609069
UN	684	.	NC_000913	609073	609073
UN	685	.	NC_000913	688129	688129
UN	686	.	NC_000913	688131	688765
UN	687	.	NC_000913	807343	807343
UN	688	.	NC_000913	807356	807356
UN	689	.	NC_000913	1094509	1095233
UN	690	.	NC_000913	1095239	1095239
UN	691	.	NC_000913	1095245	1095245
UN	692	.	NC_000913	1196374	1211413
UN	693	.	NC_000913	1294035	1294175
UN	694	.	NC_000913	1299499	1300697
UN	695	.	NC_000913	1303073	1303084
UN	696	.	NC_000913	1396324	1396981
UN	697	.	NC_000913	1416583	1416583
UN	698	.	NC_000913	1418514	1418514
UN	699	.	NC_000913	1423272	1423273
UN	700	.	NC_000913	1423338	1423338
UN	701	.	NC_000913	1423404	1423404
UN	702	.	NC_000913	1427821	1427822
UN	703	.	NC_000913	1427992	1427992
UN	704	.	NC_000913	1428147	1428191
UN	705	.	NC_000913	1428202	1428203
UN	706	.	NC_000913	1428210	1428211
UN	707	.	NC_000913	1428214	1428214
UN	708	.	NC_000913	1428240	1428240
UN	709	.	NC_000913	1428945	1428945
UN	710	.	NC_000913	1429906	1429906
UN	711	.	NC_000913	1429914	1429914
UN	712	.	NC_000913	1429917	1429917
UN	713	.	NC_000913	1429927	1429927
UN	714	.	NC_000913	1429930	1429930
UN	715	.	NC_000913	1429938	1429938
UN	716	.	NC_000913	1429940	1429940
UN	717	.	NC_000913	1429983	1429983
UN	718	.	NC_000913	1430042	1430042
UN	719	.	NC_000913	1430045	1430045
UN	720	.	NC_000913	1430047	1430047
UN	721	.	NC_000913	1430050	1430051
UN	722	.	NC_000913	1430053	1430054
UN	723	.	NC_000913	1430056	1430056
UN	724	.	NC_000913	1430058	1430086
UN	725	.	NC_000913	1430097	1430156
UN	726	.	NC_000913	1430199	1430199
UN	727	.	NC_000913	1430234	1430234
UN	728	.	NC_000913	1430255	1430255
UN	729	.	NC_000913	1430272	1430272
UN	730	.	NC_000913	1430296	1430296
UN	731	.	NC_000913	1430346	1430346
UN	732	.	NC_000913	1430374	1430374
UN	733	.	NC_000913	1430386	1430398
UN	734	.	NC_000913	1430410	1430410
UN	735	.	NC_000913	1432885	1432928
UN	736	.	NC_000913	1432931	1432931
UN	737	.	NC_000913	1432933	1432980
UN	738	.	NC_000913	1432982	1432982
UN	739	.	NC_000913	1432993	1432993
UN	740	.	NC_000913	1433001	1433001
UN	741	.	NC_000913	1433008	1433008
UN	742	.	NC_000913	1433014	1433014
UN	743	.	NC_000913	1433067	1433067
UN	744	.	NC_000913	1468156	1468156
UN	745	.	NC_000913	1468162	1468974
UN	746	.	NC_000913	1469550	1470229
UN	747	.	NC_000913	1528521	1528521
UN	748	.	NC_000913	1528552	1528939
UN	749	.	NC_000913	1634370	1634370
UN	750	.	NC_000913	1634382	1634382
UN	751	.	NC_000913	1634388	1634388
UN	752	.	NC_000913	1634404	1634404
UN	753	.	NC_000913	1634482	1634482
UN	754	.	NC_000913	1634484	1634484
UN	755	.	NC_000913	1634597	1634597
UN	756	.	NC_000913	1634658	1634658
UN	757	.	NC_000913	1634661	1634661
UN	758	.	NC_000913	1634676	1634676
UN	759	.	NC_000913	1634699	1634699
UN	760	.	NC_000913	1634724	1634724
UN	761	.	NC_000913	1651100	1651293
UN	762	.	NC_000913	1978495	1979270
UN	763	.	NC_000913	2066982	2067035
UN	764	.	NC_000913	2069204	2069204
UN	765	.	NC_000913	2069211	2070022
UN	766	.	NC_000913	2070024	2070024
UN	767	.	NC_000913	2102002	2102663
UN	768	.	NC_000913	2170415	2170415
UN	769	.	NC_000913	2170417	2170418
UN	770	.	NC_000913	2170420	2170421
UN	771	.	NC_000913	2170423	2170424
UN	772	.	NC_000913	2170428	2170429
UN	773	.	NC_000913	2170431	2170431
UN	774	.	NC_000913	2170434	2171147
UN	775	.	NC_000913	2171149	2171151
UN	776	.	NC_000913	2171153	2171153
UN	777	.	NC_000913	2171163	2171163
UN	778	.	NC_000913	2289194	2289833
UN	779	.	NC_000913	2514538	2514538
UN	780	.	NC_000913	2514540	2515350
UN	781	.	NC_000913	2558699	2565488
UN	782	.	NC_000913	2726341	2728979
UN	783	.	NC_000913	2729830	2730689
UN	784	.	NC_000913	2996616	2996617
UN	785	.	NC_000913	2996619	2997418
UN	786	.	NC_000913	3130432	3131066
UN	787	.	NC_000913	3186382	3187151
UN	788	.	NC_000913	3365836	3366464
UN	789	.	NC_000913	3423924	3424375
UN	790	.	NC_000913	3424944	3426576
UN	791	.	NC_000913	3427216	3428294
UN	792	.	NC_000913	3583712	3583712
UN	793	.	NC_000913	3583715	3583718
UN	794	.	NC_000913	3583720	3583912
UN	795	.	NC_000913	3619542	3619543
UN	796	.	NC_000913	3619545	3619546
UN	797	.	NC_000913	3619548	3620805
UN	798	.	NC_000913	3621336	3622033
UN	799	.	NC_000913	3622037	3622037
UN	800	.	NC_000913	3622039	3622041
UN	801	.	NC_000913	3622043	3622044
UN	802	.	NC_000913	3622046	3622046
UN	803	.	NC_000913	3622049	3622051
UN	804	.	NC_000913	3622054	3622054
UN	805	.	NC_000913	3652299	3652299
UN	806	.	NC_000913	3652304	3652304
UN	807	.	NC_000913	3652308	3652944
UN	808	.	NC_000913	3652946	3652946
UN	809	.	NC_000913	3652948	3652948
UN	810	.	NC_000913	3682261	3682294
UN	811	.	NC_000913	3762530	3763794
UN	812	.	NC_000913	3764323	3764323
UN	813	.	NC_000913	3764326	3765048
UN	814	.	NC_000913	3942320	3943115
UN	815	.	NC_000913	3943117	3943118
UN	816	.	NC_000913	3944320	3945284
UN	817	.	NC_000913	4035443	4035443
UN	818	.	NC_000913	4035451	4035453
UN	819	.	NC_000913	4036014	4036799
UN	820	.	NC_000913	4036802	4036802
UN	821	.	NC_000913	4038108	4038403
UN	822	.	NC_000913	4039001	4039098
UN	823	.	NC_000913	4039100	4039100
UN	824	.	NC_000913	4039103	4039103
UN	825	.	NC_000913	4039674	4040315
UN	826	.	NC_000913	4166923	4167935
UN	827	.	NC_000913	4168843	4168843
UN	828	.	NC_000913	4168846	4171361
UN	829	.	NC_000913	4171364	4171364
UN	830	.	NC_000913	4208395	4209474
UN	831	.	NC_000913	4210304	4212838
UN	832	.	NC_000913	4498476	4499227
UN	833	.	NC_000913	4507743	4507743
UN	834	.	NC_000913	4507747	4508410