#=GENOME_DIFF 1.0 #=CREATED 18:37:28 03 Jun 2025 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20250516nextseq_run_rmdup/IH113_rmdup_R1R2_ -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH113_rmdup_R1.fastq.gz /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH113_rmdup_R2.fastq.gz #=REFSEQ /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff #=READSEQ /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH113_rmdup_R1.fastq.gz #=READSEQ /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH113_rmdup_R2.fastq.gz #=CONVERTED-BASES 492328800 #=CONVERTED-READS 1641096 #=INPUT-BASES 492407400 #=INPUT-READS 1641358 #=MAPPED-BASES 473380165 #=MAPPED-READS 1580332 SUB 1 72,73 NC_000913 61440 2 AA SNP 2 76 NC_000913 159169 A SNP 3 77 NC_000913 202464 A DEL 4 294,304 NC_000913 257908 776 SNP 5 78 NC_000913 284535 G SUB 6 79,80 NC_000913 364753 2 CC SNP 7 81 NC_000913 403038 T SUB 8 82,83 NC_000913 404238 2 TT SNP 9 85 NC_000913 456803 T INS 10 308 NC_000913 481906 TTACCCG repeat_length=7 repeat_new_copies=2 repeat_ref_copies=1 repeat_seq=TTACCCG MOB 11 307,310 NC_000913 578014 IS2 -1 5 DEL 12 295,305 NC_000913 674957 12894 mediated=IS5 SNP 13 191 NC_000913 706759 A SNP 14 192 NC_000913 708774 A SNP 15 195 NC_000913 881614 T MOB 16 306,316 NC_000913 932362 IS2 1 5 SNP 17 196 NC_000913 997536 C SNP 18 197 NC_000913 1023187 T SNP 19 198 NC_000913 1169836 G SNP 20 199 NC_000913 1189980 G SNP 21 200 NC_000913 1196220 T SNP 22 201 NC_000913 1196232 T SNP 23 202 NC_000913 1196245 C SNP 24 203 NC_000913 1196247 G DEL 25 297,320 NC_000913 1299499 1199 SNP 26 212 NC_000913 1301992 T SNP 27 213 NC_000913 1306736 G SNP 28 215 NC_000913 1337394 G SNP 29 216 NC_000913 1358859 C SNP 30 217 NC_000913 1419679 C SNP 31 218 NC_000913 1456421 A SNP 32 221 NC_000913 1582030 C MOB 33 321,322 NC_000913 1596347 IS2 -1 5 SNP 34 223 NC_000913 1643679 T SNP 35 224 NC_000913 1652331 C SNP 36 225 NC_000913 1668027 A MOB 37 323,324 NC_000913 1909811 IS2 -1 5 SNP 38 238 NC_000913 1986220 G SNP 39 239 NC_000913 2040433 A SNP 40 240 NC_000913 2043522 A SNP 41 241 NC_000913 2105739 A DEL 42 245,246 NC_000913 2173363 2 SNP 43 248 NC_000913 2316887 A SNP 44 249 NC_000913 2316895 A SNP 45 255 NC_000913 2745600 G SNP 46 256 NC_000913 2774947 A SNP 47 260 NC_000913 2867332 A SNP 48 261 NC_000913 2867455 A SNP 49 265 NC_000913 3060221 A SNP 50 266 NC_000913 3060380 T DEL 51 300,328 NC_000913 3096674 33472 mediated=IS5 SNP 52 267 NC_000913 3184065 T SNP 53 269 NC_000913 3388041 G INS 54 270 NC_000913 3560455 G SNP 55 272 NC_000913 3603627 T SNP 56 273 NC_000913 3707947 A DEL 57 302,334 NC_000913 3815859 82 MOB 58 317,327 NC_000913 3817267 IS3 -1 3 SNP 59 276 NC_000913 3837039 T SNP 60 277 NC_000913 3844617 T MOB 61 332,333 NC_000913 3889124 IS5 -1 4 SNP 62 281 NC_000913 4183829 C SNP 63 282 NC_000913 4223638 C SNP 64 283 NC_000913 4248791 A SNP 65 285 NC_000913 4283161 T INS 66 287,288 NC_000913 4296381 GC SNP 67 290 NC_000913 4440855 A SNP 68 291 NC_000913 4441042 T SNP 69 292 NC_000913 4510238 G SNP 70 293 NC_000913 4640877 T RA 71 . NC_000913 12152 0 G T bias_e_value=18.1301 bias_p_value=3.90596e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=171.9 fisher_strand_p_value=2.40507e-07 frequency=3.036e-01 ks_quality_p_value=1 major_base=G major_cov=35/43 major_frequency=6.964e-01 minor_base=T minor_cov=0/34 new_cov=0/34 polymorphism_frequency=3.036e-01 polymorphism_score=25.0 prediction=polymorphism ref_cov=35/43 total_cov=35/77 RA 72 . NC_000913 61440 0 G A consensus_score=314.8 frequency=1 major_base=A major_cov=40/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/48 RA 73 . NC_000913 61441 0 G A consensus_score=305.7 frequency=1 major_base=A major_cov=40/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/47 RA 74 . NC_000913 85651 0 G T bias_e_value=1097.47 bias_p_value=0.00023644 consensus_reject=FREQUENCY_CUTOFF consensus_score=196.7 fisher_strand_p_value=2.00041e-05 frequency=2.222e-01 ks_quality_p_value=1 major_base=G major_cov=36/55 major_frequency=7.778e-01 minor_base=T minor_cov=0/26 new_cov=0/26 polymorphism_frequency=2.222e-01 polymorphism_score=11.6 prediction=polymorphism ref_cov=36/55 total_cov=36/81 RA 75 . NC_000913 147802 0 C A bias_e_value=10.0288 bias_p_value=2.1606e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=204.2 fisher_strand_p_value=1.28068e-07 frequency=2.881e-01 ks_quality_p_value=1 major_base=C major_cov=46/38 major_frequency=7.119e-01 minor_base=A minor_cov=34/0 new_cov=34/0 polymorphism_frequency=2.881e-01 polymorphism_score=11.4 prediction=polymorphism ref_cov=46/38 total_cov=80/38 RA 76 . NC_000913 159169 0 T A bias_e_value=4641400 bias_p_value=0.999945 consensus_score=354.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.989531 major_base=A major_cov=63/33 major_frequency=9.897e-01 minor_base=. minor_cov=1/0 new_cov=63/33 polymorphism_frequency=9.897e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=0/0 total_cov=64/33 RA 77 . NC_000913 202464 0 C A consensus_score=393.7 frequency=1 major_base=A major_cov=55/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/55 RA 78 . NC_000913 284535 0 T G consensus_score=140.2 frequency=1 major_base=G major_cov=18/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/21 RA 79 . NC_000913 364753 0 T C consensus_score=287.8 frequency=1 major_base=C major_cov=30/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/47 RA 80 . NC_000913 364754 0 T C consensus_score=289.5 frequency=1 major_base=C major_cov=30/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/48 RA 81 . NC_000913 403038 0 C T consensus_score=300.2 frequency=1 major_base=T major_cov=44/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/39 RA 82 . NC_000913 404238 0 C T consensus_score=198.9 frequency=1 major_base=T major_cov=31/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/24 RA 83 . NC_000913 404239 0 C T consensus_score=198.3 frequency=1 major_base=T major_cov=31/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/24 RA 84 . NC_000913 449461 0 C A bias_e_value=16618.3 bias_p_value=0.00358025 consensus_reject=FREQUENCY_CUTOFF consensus_score=144.6 fisher_strand_p_value=0.000406478 frequency=2.333e-01 ks_quality_p_value=1 major_base=C major_cov=23/23 major_frequency=7.667e-01 minor_base=A minor_cov=0/14 new_cov=0/14 polymorphism_frequency=2.333e-01 polymorphism_score=19.6 prediction=polymorphism ref_cov=23/23 total_cov=23/37 RA 85 . NC_000913 456803 0 A T bias_e_value=2701390 bias_p_value=0.581988 consensus_score=413.1 fisher_strand_p_value=0.239636 frequency=1 ks_quality_p_value=1 major_base=T major_cov=61/57 major_frequency=9.833e-01 minor_base=G minor_cov=0/2 new_cov=61/57 polymorphism_frequency=9.833e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/59 RA 86 . NC_000913 566396 0 T A bias_e_value=1065070 bias_p_value=0.22946 consensus_reject=FREQUENCY_CUTOFF consensus_score=304.0 fisher_strand_p_value=0.0628233 frequency=2.105e-01 ks_quality_p_value=0.958769 major_base=T major_cov=43/47 major_frequency=7.895e-01 minor_base=A minor_cov=6/18 new_cov=6/18 polymorphism_frequency=2.105e-01 polymorphism_score=88.0 prediction=polymorphism ref_cov=43/47 total_cov=49/66 RA 87 . NC_000913 566414 0 A G bias_e_value=3044640 bias_p_value=0.655938 consensus_reject=FREQUENCY_CUTOFF consensus_score=259.3 fisher_strand_p_value=0.297217 frequency=2.439e-01 ks_quality_p_value=0.994769 major_base=A major_cov=45/48 major_frequency=7.561e-01 minor_base=G minor_cov=11/19 new_cov=11/19 polymorphism_frequency=2.439e-01 polymorphism_score=79.2 prediction=polymorphism ref_cov=45/48 total_cov=56/67 RA 88 . NC_000913 566435 0 G A bias_e_value=983543 bias_p_value=0.211895 consensus_reject=FREQUENCY_CUTOFF consensus_score=223.7 fisher_strand_p_value=0.0544053 frequency=2.761e-01 ks_quality_p_value=0.994323 major_base=G major_cov=47/50 major_frequency=7.239e-01 minor_base=A minor_cov=11/26 new_cov=11/26 polymorphism_frequency=2.761e-01 polymorphism_score=110.7 prediction=polymorphism ref_cov=47/50 total_cov=58/76 RA 89 . NC_000913 566444 0 T C bias_e_value=561804 bias_p_value=0.121035 consensus_reject=FREQUENCY_CUTOFF consensus_score=237.2 fisher_strand_p_value=0.0261332 frequency=2.937e-01 ks_quality_p_value=0.996416 major_base=T major_cov=47/54 major_frequency=7.063e-01 minor_base=C minor_cov=11/31 new_cov=11/31 polymorphism_frequency=2.937e-01 polymorphism_score=123.0 prediction=polymorphism ref_cov=47/54 total_cov=58/85 RA 90 . NC_000913 566451 0 T C bias_e_value=620015 bias_p_value=0.133576 consensus_reject=FREQUENCY_CUTOFF consensus_score=218.3 fisher_strand_p_value=0.0296753 frequency=3.172e-01 ks_quality_p_value=0.995404 major_base=T major_cov=48/51 major_frequency=6.828e-01 minor_base=C minor_cov=13/33 new_cov=13/33 polymorphism_frequency=3.172e-01 polymorphism_score=132.8 prediction=polymorphism ref_cov=48/51 total_cov=61/85 RA 91 . NC_000913 566463 0 T C bias_e_value=840254 bias_p_value=0.181025 consensus_reject=FREQUENCY_CUTOFF consensus_score=229.9 fisher_strand_p_value=0.0475306 frequency=3.046e-01 ks_quality_p_value=0.922945 major_base=T major_cov=49/56 major_frequency=6.954e-01 minor_base=C minor_cov=13/33 new_cov=13/33 polymorphism_frequency=3.046e-01 polymorphism_score=133.7 prediction=polymorphism ref_cov=49/56 total_cov=62/89 RA 92 . NC_000913 566468 0 C T bias_e_value=958665 bias_p_value=0.206535 consensus_reject=FREQUENCY_CUTOFF consensus_score=195.0 fisher_strand_p_value=0.0522697 frequency=3.268e-01 ks_quality_p_value=1 major_base=C major_cov=47/56 major_frequency=6.732e-01 minor_base=T minor_cov=14/36 new_cov=14/36 polymorphism_frequency=3.268e-01 polymorphism_score=154.0 prediction=polymorphism ref_cov=47/56 total_cov=62/92 RA 93 . NC_000913 566492 0 G T bias_e_value=1015700 bias_p_value=0.218823 consensus_reject=FREQUENCY_CUTOFF consensus_score=158.8 fisher_strand_p_value=0.0749303 frequency=3.818e-01 ks_quality_p_value=0.753892 major_base=G major_cov=47/55 major_frequency=6.182e-01 minor_base=T minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.818e-01 polymorphism_score=190.2 prediction=polymorphism ref_cov=47/55 total_cov=67/98 RA 94 . NC_000913 566493 0 G A bias_e_value=1442750 bias_p_value=0.310827 consensus_reject=FREQUENCY_CUTOFF consensus_score=140.3 fisher_strand_p_value=0.101564 frequency=3.780e-01 ks_quality_p_value=0.903019 major_base=G major_cov=47/55 major_frequency=6.220e-01 minor_base=A minor_cov=20/42 new_cov=20/42 polymorphism_frequency=3.780e-01 polymorphism_score=200.5 prediction=polymorphism ref_cov=47/55 total_cov=67/97 RA 95 . NC_000913 566498 0 C T bias_e_value=671881 bias_p_value=0.144751 consensus_reject=FREQUENCY_CUTOFF consensus_score=114.8 fisher_strand_p_value=0.101564 frequency=3.780e-01 ks_quality_p_value=0.322551 major_base=C major_cov=47/55 major_frequency=6.220e-01 minor_base=T minor_cov=20/42 new_cov=20/42 polymorphism_frequency=3.780e-01 polymorphism_score=210.4 prediction=polymorphism ref_cov=47/55 total_cov=67/97 RA 96 . NC_000913 566510 0 G C bias_e_value=1576540 bias_p_value=0.33965 consensus_reject=FREQUENCY_CUTOFF consensus_score=181.4 fisher_strand_p_value=0.105884 frequency=3.684e-01 ks_quality_p_value=0.983293 major_base=G major_cov=49/59 major_frequency=6.316e-01 minor_base=C minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.684e-01 polymorphism_score=224.7 prediction=polymorphism ref_cov=49/59 total_cov=69/102 RA 97 . NC_000913 566513 0 C T bias_e_value=1583990 bias_p_value=0.341256 consensus_reject=FREQUENCY_CUTOFF consensus_score=152.3 fisher_strand_p_value=0.104826 frequency=3.728e-01 ks_quality_p_value=1 major_base=C major_cov=48/58 major_frequency=6.272e-01 minor_base=T minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.728e-01 polymorphism_score=207.1 prediction=polymorphism ref_cov=48/58 total_cov=69/101 RA 98 . NC_000913 566519 0 T C bias_e_value=1586890 bias_p_value=0.341881 consensus_reject=FREQUENCY_CUTOFF consensus_score=177.6 fisher_strand_p_value=0.106344 frequency=3.706e-01 ks_quality_p_value=0.988334 major_base=T major_cov=48/59 major_frequency=6.294e-01 minor_base=C minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.706e-01 polymorphism_score=195.7 prediction=polymorphism ref_cov=48/59 total_cov=68/102 RA 99 . NC_000913 566522 0 C A bias_e_value=1611150 bias_p_value=0.347106 consensus_reject=FREQUENCY_CUTOFF consensus_score=189.7 fisher_strand_p_value=0.143077 frequency=3.750e-01 ks_quality_p_value=0.750881 major_base=C major_cov=46/59 major_frequency=6.250e-01 minor_base=A minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.750e-01 polymorphism_score=177.4 prediction=polymorphism ref_cov=46/59 total_cov=66/102 RA 100 . NC_000913 566528 0 A G bias_e_value=1059120 bias_p_value=0.228178 consensus_reject=FREQUENCY_CUTOFF consensus_score=187.4 fisher_strand_p_value=0.0764199 frequency=3.684e-01 ks_quality_p_value=0.782224 major_base=A major_cov=50/58 major_frequency=6.316e-01 minor_base=G minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.684e-01 polymorphism_score=195.7 prediction=polymorphism ref_cov=50/58 total_cov=70/101 RA 101 . NC_000913 566530 1 . T bias_e_value=1258760 bias_p_value=0.271188 consensus_reject=FREQUENCY_CUTOFF consensus_score=193.1 fisher_strand_p_value=0.0764199 frequency=3.684e-01 ks_quality_p_value=0.991128 major_base=. major_cov=50/58 major_frequency=6.316e-01 minor_base=T minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.684e-01 polymorphism_score=inf prediction=polymorphism ref_cov=50/58 total_cov=70/101 RA 102 . NC_000913 566532 0 A T bias_e_value=1256550 bias_p_value=0.270712 consensus_reject=FREQUENCY_CUTOFF consensus_score=214.6 fisher_strand_p_value=0.0755577 frequency=3.706e-01 ks_quality_p_value=1 major_base=A major_cov=50/57 major_frequency=6.294e-01 minor_base=T minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.706e-01 polymorphism_score=255.3 prediction=polymorphism ref_cov=50/57 total_cov=70/101 RA 103 . NC_000913 566535 0 T . bias_e_value=972943 bias_p_value=0.209611 consensus_reject=FREQUENCY_CUTOFF consensus_score=412.7 fisher_strand_p_value=0.0547251 frequency=3.621e-01 ks_quality_p_value=0.974242 major_base=T major_cov=53/58 major_frequency=6.379e-01 minor_base=. minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.621e-01 polymorphism_score=298.4 prediction=polymorphism ref_cov=53/58 total_cov=73/101 RA 104 . NC_000913 566536 0 G A bias_e_value=959481 bias_p_value=0.206711 consensus_reject=FREQUENCY_CUTOFF consensus_score=170.6 fisher_strand_p_value=0.0554462 frequency=3.600e-01 ks_quality_p_value=0.943785 major_base=G major_cov=53/59 major_frequency=6.400e-01 minor_base=A minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.600e-01 polymorphism_score=201.9 prediction=polymorphism ref_cov=53/59 total_cov=73/102 RA 105 . NC_000913 566543 0 A T bias_e_value=564416 bias_p_value=0.121598 consensus_reject=FREQUENCY_CUTOFF consensus_score=226.2 fisher_strand_p_value=0.0262036 frequency=3.621e-01 ks_quality_p_value=0.99963 major_base=A major_cov=55/56 major_frequency=6.379e-01 minor_base=T minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.621e-01 polymorphism_score=256.5 prediction=polymorphism ref_cov=55/56 total_cov=75/99 RA 106 . NC_000913 566547 0 C A bias_e_value=541812 bias_p_value=0.116728 consensus_reject=FREQUENCY_CUTOFF consensus_score=207.9 fisher_strand_p_value=0.0250888 frequency=3.684e-01 ks_quality_p_value=0.991128 major_base=C major_cov=54/54 major_frequency=6.316e-01 minor_base=A minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.684e-01 polymorphism_score=172.5 prediction=polymorphism ref_cov=54/54 total_cov=74/97 RA 107 . NC_000913 566565 0 A G bias_e_value=989778 bias_p_value=0.213238 consensus_reject=FREQUENCY_CUTOFF consensus_score=177.2 fisher_strand_p_value=0.0545576 frequency=3.787e-01 ks_quality_p_value=1 major_base=A major_cov=51/54 major_frequency=6.213e-01 minor_base=G minor_cov=21/43 new_cov=21/43 polymorphism_frequency=3.787e-01 polymorphism_score=189.7 prediction=polymorphism ref_cov=51/54 total_cov=72/97 RA 108 . NC_000913 566570 0 A C bias_e_value=747019 bias_p_value=0.160938 consensus_reject=FREQUENCY_CUTOFF consensus_score=132.8 fisher_strand_p_value=0.0375945 frequency=3.663e-01 ks_quality_p_value=1 major_base=A major_cov=53/56 major_frequency=6.337e-01 minor_base=C minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.663e-01 polymorphism_score=211.9 prediction=polymorphism ref_cov=53/56 total_cov=73/99 RA 109 . NC_000913 566597 0 T C bias_e_value=945003 bias_p_value=0.203592 consensus_reject=FREQUENCY_CUTOFF consensus_score=190.7 fisher_strand_p_value=0.0513021 frequency=3.669e-01 ks_quality_p_value=0.999485 major_base=T major_cov=50/57 major_frequency=6.331e-01 minor_base=C minor_cov=19/43 new_cov=19/43 polymorphism_frequency=3.669e-01 polymorphism_score=191.7 prediction=polymorphism ref_cov=50/57 total_cov=70/100 RA 110 . NC_000913 566651 0 T C bias_e_value=1407610 bias_p_value=0.303257 consensus_reject=FREQUENCY_CUTOFF consensus_score=160.4 fisher_strand_p_value=0.103233 frequency=3.818e-01 ks_quality_p_value=0.857947 major_base=T major_cov=46/56 major_frequency=6.182e-01 minor_base=C minor_cov=20/43 new_cov=20/43 polymorphism_frequency=3.818e-01 polymorphism_score=193.5 prediction=polymorphism ref_cov=46/56 total_cov=66/99 RA 111 . NC_000913 581115 0 C A bias_e_value=4042700 bias_p_value=0.870962 consensus_reject=FREQUENCY_CUTOFF consensus_score=166.8 fisher_strand_p_value=0.540749 frequency=2.857e-01 ks_quality_p_value=0.9933 major_base=C major_cov=46/39 major_frequency=7.143e-01 minor_base=A minor_cov=21/13 new_cov=21/13 polymorphism_frequency=2.857e-01 polymorphism_score=89.5 prediction=polymorphism ref_cov=46/39 total_cov=67/52 RA 112 . NC_000913 581121 0 A C bias_e_value=4584300 bias_p_value=0.987643 consensus_reject=FREQUENCY_CUTOFF consensus_score=123.3 fisher_strand_p_value=0.84697 frequency=3.150e-01 ks_quality_p_value=1 major_base=A major_cov=49/38 major_frequency=6.850e-01 minor_base=C minor_cov=24/16 new_cov=24/16 polymorphism_frequency=3.150e-01 polymorphism_score=119.0 prediction=polymorphism ref_cov=49/38 total_cov=73/54 RA 113 . NC_000913 581127 0 G A bias_e_value=4639270 bias_p_value=0.999488 consensus_reject=FREQUENCY_CUTOFF consensus_score=115.0 fisher_strand_p_value=1 frequency=3.359e-01 ks_quality_p_value=0.968161 major_base=G major_cov=50/35 major_frequency=6.641e-01 minor_base=A minor_cov=26/17 new_cov=26/17 polymorphism_frequency=3.359e-01 polymorphism_score=140.3 prediction=polymorphism ref_cov=50/35 total_cov=76/52 RA 114 . NC_000913 581130 0 G A bias_e_value=3151120 bias_p_value=0.678878 consensus_reject=FREQUENCY_CUTOFF consensus_score=100.1 fisher_strand_p_value=0.849433 frequency=3.386e-01 ks_quality_p_value=0.370831 major_base=G major_cov=48/36 major_frequency=6.614e-01 minor_base=A minor_cov=26/17 new_cov=26/17 polymorphism_frequency=3.386e-01 polymorphism_score=139.1 prediction=polymorphism ref_cov=48/36 total_cov=74/53 RA 115 . NC_000913 581139 0 C A bias_e_value=2393550 bias_p_value=0.515667 consensus_reject=FREQUENCY_CUTOFF consensus_score=115.5 fisher_strand_p_value=0.359143 frequency=3.488e-01 ks_quality_p_value=0.546184 major_base=C major_cov=45/39 major_frequency=6.512e-01 minor_base=A minor_cov=28/17 new_cov=28/17 polymorphism_frequency=3.488e-01 polymorphism_score=120.9 prediction=polymorphism ref_cov=45/39 total_cov=73/56 RA 116 . NC_000913 581141 0 G A bias_e_value=4251540 bias_p_value=0.915954 consensus_reject=FREQUENCY_CUTOFF consensus_score=111.7 fisher_strand_p_value=0.705704 frequency=3.359e-01 ks_quality_p_value=0.877287 major_base=G major_cov=47/38 major_frequency=6.641e-01 minor_base=A minor_cov=26/17 new_cov=26/17 polymorphism_frequency=3.359e-01 polymorphism_score=137.3 prediction=polymorphism ref_cov=47/38 total_cov=73/56 RA 117 . NC_000913 581145 0 C T bias_e_value=3764940 bias_p_value=0.81112 consensus_reject=FREQUENCY_CUTOFF consensus_score=143.6 fisher_strand_p_value=0.455459 frequency=3.182e-01 ks_quality_p_value=0.992954 major_base=C major_cov=49/41 major_frequency=6.818e-01 minor_base=T minor_cov=26/16 new_cov=26/16 polymorphism_frequency=3.182e-01 polymorphism_score=127.9 prediction=polymorphism ref_cov=49/41 total_cov=75/58 RA 118 . NC_000913 581154 0 A G bias_e_value=4368810 bias_p_value=0.941219 consensus_reject=FREQUENCY_CUTOFF consensus_score=155.2 fisher_strand_p_value=0.709324 frequency=3.185e-01 ks_quality_p_value=0.954907 major_base=A major_cov=51/41 major_frequency=6.815e-01 minor_base=G minor_cov=26/17 new_cov=26/17 polymorphism_frequency=3.185e-01 polymorphism_score=126.5 prediction=polymorphism ref_cov=51/41 total_cov=77/58 RA 119 . NC_000913 581175 0 T C bias_e_value=4546940 bias_p_value=0.979595 consensus_reject=FREQUENCY_CUTOFF consensus_score=160.5 fisher_strand_p_value=0.851829 frequency=3.185e-01 ks_quality_p_value=0.944919 major_base=T major_cov=53/39 major_frequency=6.815e-01 minor_base=C minor_cov=26/17 new_cov=26/17 polymorphism_frequency=3.185e-01 polymorphism_score=131.3 prediction=polymorphism ref_cov=53/39 total_cov=79/56 RA 120 . NC_000913 581178 0 T G bias_e_value=4557900 bias_p_value=0.981956 consensus_reject=FREQUENCY_CUTOFF consensus_score=106.3 fisher_strand_p_value=1 frequency=3.359e-01 ks_quality_p_value=0.816145 major_base=T major_cov=51/34 major_frequency=6.641e-01 minor_base=G minor_cov=26/17 new_cov=26/17 polymorphism_frequency=3.359e-01 polymorphism_score=139.6 prediction=polymorphism ref_cov=51/34 total_cov=77/51 RA 121 . NC_000913 581196 0 C G bias_e_value=4550890 bias_p_value=0.980445 consensus_reject=FREQUENCY_CUTOFF consensus_score=85.4 fisher_strand_p_value=1 frequency=3.780e-01 ks_quality_p_value=0.80887 major_base=C major_cov=47/32 major_frequency=6.220e-01 minor_base=G minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.780e-01 polymorphism_score=167.1 prediction=polymorphism ref_cov=47/32 total_cov=75/52 RA 122 . NC_000913 581199 0 A C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.7 fisher_strand_p_value=1 frequency=3.701e-01 ks_quality_p_value=0.999179 major_base=A major_cov=46/34 major_frequency=6.299e-01 minor_base=C minor_cov=27/20 new_cov=27/20 polymorphism_frequency=3.701e-01 polymorphism_score=141.2 prediction=polymorphism ref_cov=46/34 total_cov=73/54 RA 123 . NC_000913 581202 0 T A bias_e_value=4628340 bias_p_value=0.997131 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.0 fisher_strand_p_value=1 frequency=3.840e-01 ks_quality_p_value=0.925213 major_base=T major_cov=44/33 major_frequency=6.160e-01 minor_base=A minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.840e-01 polymorphism_score=196.6 prediction=polymorphism ref_cov=44/33 total_cov=72/53 RA 124 . NC_000913 581206 0 A G bias_e_value=3912310 bias_p_value=0.842871 consensus_reject=FREQUENCY_CUTOFF consensus_score=73.0 fisher_strand_p_value=0.853641 frequency=3.840e-01 ks_quality_p_value=0.579516 major_base=A major_cov=43/34 major_frequency=6.160e-01 minor_base=G minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.840e-01 polymorphism_score=151.2 prediction=polymorphism ref_cov=43/34 total_cov=71/54 RA 125 . NC_000913 581208 0 T A bias_e_value=4565180 bias_p_value=0.983524 consensus_reject=FREQUENCY_CUTOFF consensus_score=67.4 fisher_strand_p_value=0.852758 frequency=3.871e-01 ks_quality_p_value=0.966341 major_base=T major_cov=42/34 major_frequency=6.129e-01 minor_base=A minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.871e-01 polymorphism_score=197.5 prediction=polymorphism ref_cov=42/34 total_cov=70/54 RA 126 . NC_000913 581214 0 T C bias_e_value=4169720 bias_p_value=0.898328 consensus_reject=FREQUENCY_CUTOFF consensus_score=71.9 fisher_strand_p_value=0.58441 frequency=3.984e-01 ks_quality_p_value=1 major_base=T major_cov=40/34 major_frequency=6.016e-01 minor_base=C minor_cov=29/20 new_cov=29/20 polymorphism_frequency=3.984e-01 polymorphism_score=155.3 prediction=polymorphism ref_cov=40/34 total_cov=69/54 RA 127 . NC_000913 581220 0 C T bias_e_value=3588150 bias_p_value=0.773032 consensus_reject=FREQUENCY_CUTOFF consensus_score=57.0 fisher_strand_p_value=0.710324 frequency=3.902e-01 ks_quality_p_value=0.573233 major_base=C major_cov=40/35 major_frequency=6.098e-01 minor_base=T minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.902e-01 polymorphism_score=155.3 prediction=polymorphism ref_cov=40/35 total_cov=68/55 RA 128 . NC_000913 581223 0 C T bias_e_value=4225960 bias_p_value=0.910443 consensus_reject=FREQUENCY_CUTOFF consensus_score=64.4 fisher_strand_p_value=0.710626 frequency=3.934e-01 ks_quality_p_value=0.855341 major_base=C major_cov=40/34 major_frequency=6.066e-01 minor_base=T minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.934e-01 polymorphism_score=152.3 prediction=polymorphism ref_cov=40/34 total_cov=68/54 RA 129 . NC_000913 581226 0 G A bias_e_value=4422530 bias_p_value=0.952793 consensus_reject=FREQUENCY_CUTOFF consensus_score=58.3 fisher_strand_p_value=0.708907 frequency=3.967e-01 ks_quality_p_value=1 major_base=G major_cov=39/34 major_frequency=6.033e-01 minor_base=A minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.967e-01 polymorphism_score=156.6 prediction=polymorphism ref_cov=39/34 total_cov=68/54 RA 130 . NC_000913 581227 0 A G bias_e_value=4359360 bias_p_value=0.939183 consensus_reject=FREQUENCY_CUTOFF consensus_score=75.6 fisher_strand_p_value=0.852758 frequency=3.871e-01 ks_quality_p_value=0.788223 major_base=A major_cov=42/34 major_frequency=6.129e-01 minor_base=G minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.871e-01 polymorphism_score=149.9 prediction=polymorphism ref_cov=42/34 total_cov=70/54 RA 131 . NC_000913 581229 0 C T bias_e_value=4210430 bias_p_value=0.907098 consensus_reject=FREQUENCY_CUTOFF consensus_score=53.3 fisher_strand_p_value=0.712791 frequency=3.967e-01 ks_quality_p_value=0.843421 major_base=C major_cov=40/33 major_frequency=6.033e-01 minor_base=T minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.967e-01 polymorphism_score=158.0 prediction=polymorphism ref_cov=40/33 total_cov=68/53 RA 132 . NC_000913 581232 0 C T bias_e_value=2189050 bias_p_value=0.471611 consensus_reject=FREQUENCY_CUTOFF consensus_score=38.7 fisher_strand_p_value=0.712791 frequency=3.967e-01 ks_quality_p_value=0.238799 major_base=C major_cov=40/33 major_frequency=6.033e-01 minor_base=T minor_cov=28/20 new_cov=28/20 polymorphism_frequency=3.967e-01 polymorphism_score=158.7 prediction=polymorphism ref_cov=40/33 total_cov=68/53 RA 133 . NC_000913 581241 0 G T bias_e_value=3314280 bias_p_value=0.714031 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-5.6 fisher_strand_p_value=0.390292 frequency=4.855e-01 ks_quality_p_value=0.888486 major_base=G major_cov=39/32 major_frequency=5.145e-01 minor_base=T minor_cov=42/25 new_cov=42/25 polymorphism_frequency=4.855e-01 polymorphism_score=210.8 prediction=polymorphism ref_cov=39/32 total_cov=81/57 RA 134 . NC_000913 581250 0 T C bias_e_value=3955050 bias_p_value=0.852078 consensus_reject=FREQUENCY_CUTOFF consensus_score=25.8 fisher_strand_p_value=0.508034 frequency=5.102e-01 ks_quality_p_value=1 major_base=C major_cov=45/30 major_frequency=5.102e-01 minor_base=T minor_cov=39/33 new_cov=45/30 polymorphism_frequency=5.102e-01 polymorphism_score=248.3 prediction=polymorphism ref_cov=39/33 total_cov=84/63 RA 135 . NC_000913 581253 0 T C bias_e_value=41294.4 bias_p_value=0.00889648 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-1.6 fisher_strand_p_value=0.409216 frequency=5.170e-01 ks_quality_p_value=0.002797 major_base=C major_cov=46/30 major_frequency=5.170e-01 minor_base=T minor_cov=38/33 new_cov=46/30 polymorphism_frequency=5.170e-01 polymorphism_score=239.9 prediction=polymorphism ref_cov=38/33 total_cov=84/63 RA 136 . NC_000913 581259 0 A G bias_e_value=3240040 bias_p_value=0.698035 consensus_reject=FREQUENCY_CUTOFF consensus_score=56.1 fisher_strand_p_value=0.335787 frequency=5.253e-01 ks_quality_p_value=0.988627 major_base=G major_cov=51/32 major_frequency=5.253e-01 minor_base=A minor_cov=40/35 new_cov=51/32 polymorphism_frequency=5.253e-01 polymorphism_score=248.4 prediction=polymorphism ref_cov=40/35 total_cov=91/67 RA 137 . NC_000913 581275 0 G A bias_e_value=4498010 bias_p_value=0.969054 consensus_reject=FREQUENCY_CUTOFF consensus_score=132.4 fisher_strand_p_value=0.761764 frequency=5.593e-01 ks_quality_p_value=1 major_base=A major_cov=54/45 major_frequency=5.593e-01 minor_base=G minor_cov=40/38 new_cov=54/45 polymorphism_frequency=5.593e-01 polymorphism_score=239.6 prediction=polymorphism ref_cov=40/38 total_cov=94/83 RA 138 . NC_000913 581286 0 G C bias_e_value=2177150 bias_p_value=0.469047 consensus_reject=FREQUENCY_CUTOFF consensus_score=89.4 fisher_strand_p_value=0.647656 frequency=5.517e-01 ks_quality_p_value=0.260585 major_base=C major_cov=51/45 major_frequency=5.517e-01 minor_base=G minor_cov=38/40 new_cov=51/45 polymorphism_frequency=5.517e-01 polymorphism_score=265.0 prediction=polymorphism ref_cov=38/40 total_cov=92/86 RA 139 . NC_000913 581289 0 A G bias_e_value=2433470 bias_p_value=0.524268 consensus_reject=FREQUENCY_CUTOFF consensus_score=71.6 fisher_strand_p_value=0.451086 frequency=5.562e-01 ks_quality_p_value=0.446661 major_base=G major_cov=54/45 major_frequency=5.562e-01 minor_base=A minor_cov=38/41 new_cov=54/45 polymorphism_frequency=5.562e-01 polymorphism_score=259.2 prediction=polymorphism ref_cov=38/41 total_cov=92/86 RA 140 . NC_000913 581290 0 C A bias_e_value=2613790 bias_p_value=0.563117 consensus_reject=FREQUENCY_CUTOFF consensus_score=56.9 fisher_strand_p_value=0.293432 frequency=5.593e-01 ks_quality_p_value=0.772501 major_base=A major_cov=55/44 major_frequency=5.593e-01 minor_base=C minor_cov=37/41 new_cov=55/44 polymorphism_frequency=5.593e-01 polymorphism_score=266.5 prediction=polymorphism ref_cov=37/41 total_cov=92/85 RA 141 . NC_000913 581291 0 G A bias_e_value=3344220 bias_p_value=0.72048 consensus_reject=FREQUENCY_CUTOFF consensus_score=104.9 fisher_strand_p_value=0.544186 frequency=5.625e-01 ks_quality_p_value=0.648508 major_base=A major_cov=54/45 major_frequency=5.625e-01 minor_base=G minor_cov=38/39 new_cov=54/45 polymorphism_frequency=5.625e-01 polymorphism_score=230.5 prediction=polymorphism ref_cov=38/39 total_cov=92/86 RA 142 . NC_000913 581295 0 T C bias_e_value=3711560 bias_p_value=0.799621 consensus_reject=FREQUENCY_CUTOFF consensus_score=86.1 fisher_strand_p_value=0.453898 frequency=5.556e-01 ks_quality_p_value=0.965069 major_base=C major_cov=55/45 major_frequency=5.556e-01 minor_base=T minor_cov=39/41 new_cov=55/45 polymorphism_frequency=5.556e-01 polymorphism_score=274.1 prediction=polymorphism ref_cov=39/41 total_cov=94/86 RA 143 . NC_000913 581301 0 C T bias_e_value=3818720 bias_p_value=0.822707 consensus_reject=FREQUENCY_CUTOFF consensus_score=101.9 fisher_strand_p_value=0.551501 frequency=5.531e-01 ks_quality_p_value=0.847068 major_base=T major_cov=54/45 major_frequency=5.531e-01 minor_base=C minor_cov=40/40 new_cov=54/45 polymorphism_frequency=5.531e-01 polymorphism_score=261.9 prediction=polymorphism ref_cov=40/40 total_cov=94/85 RA 144 . NC_000913 581322 0 C T bias_e_value=4610640 bias_p_value=0.993319 consensus_reject=FREQUENCY_CUTOFF consensus_score=195.9 fisher_strand_p_value=0.886653 frequency=6.029e-01 ks_quality_p_value=1 major_base=T major_cov=64/59 major_frequency=6.029e-01 minor_base=C minor_cov=41/40 new_cov=64/59 polymorphism_frequency=6.029e-01 polymorphism_score=252.6 prediction=polymorphism ref_cov=41/40 total_cov=107/99 RA 145 . NC_000913 581335 0 C A bias_e_value=4513740 bias_p_value=0.972442 consensus_reject=FREQUENCY_CUTOFF consensus_score=126.6 fisher_strand_p_value=0.78558 frequency=5.964e-01 ks_quality_p_value=0.986036 major_base=A major_cov=68/65 major_frequency=5.964e-01 minor_base=C minor_cov=48/42 new_cov=68/65 polymorphism_frequency=5.964e-01 polymorphism_score=298.0 prediction=polymorphism ref_cov=48/42 total_cov=116/107 RA 146 . NC_000913 581337 0 G A bias_e_value=4376430 bias_p_value=0.94286 consensus_reject=FREQUENCY_CUTOFF consensus_score=223.3 fisher_strand_p_value=0.681586 frequency=6.045e-01 ks_quality_p_value=1 major_base=A major_cov=68/65 major_frequency=6.045e-01 minor_base=G minor_cov=47/40 new_cov=68/65 polymorphism_frequency=6.045e-01 polymorphism_score=270.4 prediction=polymorphism ref_cov=47/40 total_cov=115/105 RA 147 . NC_000913 581380 0 C G bias_e_value=1117040 bias_p_value=0.240655 consensus_reject=FREQUENCY_CUTOFF consensus_score=90.8 fisher_strand_p_value=0.893269 frequency=5.605e-01 ks_quality_p_value=0.0719432 major_base=G major_cov=65/60 major_frequency=5.605e-01 minor_base=C minor_cov=52/46 new_cov=65/60 polymorphism_frequency=5.605e-01 polymorphism_score=inf prediction=polymorphism ref_cov=52/46 total_cov=117/109 RA 148 . NC_000913 581381 0 A G bias_e_value=4383680 bias_p_value=0.944422 consensus_reject=FREQUENCY_CUTOFF consensus_score=99.5 fisher_strand_p_value=0.68813 frequency=5.619e-01 ks_quality_p_value=0.996458 major_base=G major_cov=64/63 major_frequency=5.619e-01 minor_base=A minor_cov=53/46 new_cov=64/63 polymorphism_frequency=5.619e-01 polymorphism_score=inf prediction=polymorphism ref_cov=53/46 total_cov=117/109 RA 149 . NC_000913 581388 0 G A bias_e_value=3520040 bias_p_value=0.75836 consensus_reject=FREQUENCY_CUTOFF consensus_score=24.5 fisher_strand_p_value=0.391205 frequency=5.026e-01 ks_quality_p_value=1 major_base=A major_cov=47/51 major_frequency=5.026e-01 minor_base=G minor_cov=53/44 new_cov=47/51 polymorphism_frequency=5.026e-01 polymorphism_score=313.0 prediction=polymorphism ref_cov=53/44 total_cov=100/96 RA 150 . NC_000913 581392 0 T C bias_e_value=3434290 bias_p_value=0.739886 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=1.2 fisher_strand_p_value=0.475058 frequency=4.974e-01 ks_quality_p_value=0.783126 major_base=T major_cov=53/45 major_frequency=5.026e-01 minor_base=C minor_cov=47/50 new_cov=47/50 polymorphism_frequency=4.974e-01 polymorphism_score=inf prediction=polymorphism ref_cov=53/45 total_cov=100/95 RA 151 . NC_000913 581394 0 T C bias_e_value=3502740 bias_p_value=0.754632 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-4.7 fisher_strand_p_value=0.391205 frequency=5.026e-01 ks_quality_p_value=0.9899 major_base=C major_cov=47/51 major_frequency=5.026e-01 minor_base=T minor_cov=53/44 new_cov=47/51 polymorphism_frequency=5.026e-01 polymorphism_score=inf prediction=polymorphism ref_cov=53/44 total_cov=100/95 RA 152 . NC_000913 581397 0 T C bias_e_value=3284880 bias_p_value=0.707696 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-6.2 fisher_strand_p_value=0.390857 frequency=5.104e-01 ks_quality_p_value=0.872022 major_base=C major_cov=47/51 major_frequency=5.104e-01 minor_base=T minor_cov=51/43 new_cov=47/51 polymorphism_frequency=5.104e-01 polymorphism_score=inf prediction=polymorphism ref_cov=51/43 total_cov=98/95 RA 153 . NC_000913 581398 0 C G bias_e_value=3829440 bias_p_value=0.825017 consensus_reject=FREQUENCY_CUTOFF consensus_score=22.6 fisher_strand_p_value=0.470207 frequency=5.131e-01 ks_quality_p_value=1 major_base=G major_cov=47/51 major_frequency=5.131e-01 minor_base=C minor_cov=50/43 new_cov=47/51 polymorphism_frequency=5.131e-01 polymorphism_score=inf prediction=polymorphism ref_cov=50/43 total_cov=98/94 RA 154 . NC_000913 581404 0 C G bias_e_value=4109460 bias_p_value=0.885345 consensus_reject=FREQUENCY_CUTOFF consensus_score=10.7 fisher_strand_p_value=0.565756 frequency=5.078e-01 ks_quality_p_value=0.991802 major_base=G major_cov=47/51 major_frequency=5.078e-01 minor_base=C minor_cov=50/45 new_cov=47/51 polymorphism_frequency=5.078e-01 polymorphism_score=inf prediction=polymorphism ref_cov=50/45 total_cov=97/96 RA 155 . NC_000913 581407 0 G T bias_e_value=4231560 bias_p_value=0.91165 consensus_reject=FREQUENCY_CUTOFF consensus_score=25.0 fisher_strand_p_value=0.66673 frequency=4.974e-01 ks_quality_p_value=0.915306 major_base=G major_cov=50/47 major_frequency=5.026e-01 minor_base=T minor_cov=46/50 new_cov=46/50 polymorphism_frequency=4.974e-01 polymorphism_score=294.3 prediction=polymorphism ref_cov=50/47 total_cov=96/97 RA 156 . NC_000913 581410 0 T A bias_e_value=4352280 bias_p_value=0.937657 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=3.1 fisher_strand_p_value=0.668348 frequency=5.026e-01 ks_quality_p_value=1 major_base=A major_cov=47/51 major_frequency=5.026e-01 minor_base=T minor_cov=50/47 new_cov=47/51 polymorphism_frequency=5.026e-01 polymorphism_score=inf prediction=polymorphism ref_cov=50/47 total_cov=98/98 RA 157 . NC_000913 581412 0 G T bias_e_value=4311440 bias_p_value=0.928859 consensus_reject=FREQUENCY_CUTOFF consensus_score=31.0 fisher_strand_p_value=0.672948 frequency=4.949e-01 ks_quality_p_value=0.961951 major_base=G major_cov=51/49 major_frequency=5.051e-01 minor_base=T minor_cov=47/51 new_cov=47/51 polymorphism_frequency=4.949e-01 polymorphism_score=297.7 prediction=polymorphism ref_cov=51/49 total_cov=98/100 RA 158 . NC_000913 581413 0 C T bias_e_value=4516940 bias_p_value=0.973133 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=1.9 fisher_strand_p_value=0.777334 frequency=4.949e-01 ks_quality_p_value=1 major_base=C major_cov=50/49 major_frequency=5.051e-01 minor_base=T minor_cov=47/50 new_cov=47/50 polymorphism_frequency=4.949e-01 polymorphism_score=inf prediction=polymorphism ref_cov=50/49 total_cov=97/99 RA 159 . NC_000913 581416 0 A G bias_e_value=4610510 bias_p_value=0.993292 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-5.5 fisher_strand_p_value=0.886428 frequency=5.026e-01 ks_quality_p_value=1 major_base=G major_cov=47/51 major_frequency=5.026e-01 minor_base=A minor_cov=48/49 new_cov=47/51 polymorphism_frequency=5.026e-01 polymorphism_score=inf prediction=polymorphism ref_cov=48/49 total_cov=95/100 RA 160 . NC_000913 581421 0 T A bias_e_value=3876360 bias_p_value=0.835125 consensus_reject=FREQUENCY_CUTOFF consensus_score=32.1 fisher_strand_p_value=0.483863 frequency=4.828e-01 ks_quality_p_value=1 major_base=T major_cov=56/49 major_frequency=5.172e-01 minor_base=A minor_cov=47/51 new_cov=47/51 polymorphism_frequency=4.828e-01 polymorphism_score=inf prediction=polymorphism ref_cov=56/49 total_cov=103/100 RA 161 . NC_000913 581423 0 A C bias_e_value=3470930 bias_p_value=0.747779 consensus_reject=FREQUENCY_CUTOFF consensus_score=33.8 fisher_strand_p_value=0.575351 frequency=4.828e-01 ks_quality_p_value=0.660642 major_base=A major_cov=55/50 major_frequency=5.172e-01 minor_base=C minor_cov=47/51 new_cov=47/51 polymorphism_frequency=4.828e-01 polymorphism_score=inf prediction=polymorphism ref_cov=55/50 total_cov=102/101 RA 162 . NC_000913 581425 0 G A bias_e_value=4146810 bias_p_value=0.893391 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=4.4 fisher_strand_p_value=0.575351 frequency=4.828e-01 ks_quality_p_value=1 major_base=G major_cov=55/50 major_frequency=5.172e-01 minor_base=A minor_cov=47/51 new_cov=47/51 polymorphism_frequency=4.828e-01 polymorphism_score=inf prediction=polymorphism ref_cov=55/50 total_cov=102/101 RA 163 . NC_000913 581428 0 G T bias_e_value=3478450 bias_p_value=0.749399 consensus_reject=FREQUENCY_CUTOFF consensus_score=29.2 fisher_strand_p_value=0.396183 frequency=4.975e-01 ks_quality_p_value=0.963643 major_base=G major_cov=54/46 major_frequency=5.025e-01 minor_base=T minor_cov=47/52 new_cov=47/52 polymorphism_frequency=4.975e-01 polymorphism_score=302.7 prediction=polymorphism ref_cov=54/46 total_cov=101/99 RA 164 . NC_000913 581434 0 A G bias_e_value=3518510 bias_p_value=0.758029 consensus_reject=FREQUENCY_CUTOFF consensus_score=45.9 fisher_strand_p_value=0.393378 frequency=4.798e-01 ks_quality_p_value=0.993578 major_base=A major_cov=56/47 major_frequency=5.202e-01 minor_base=G minor_cov=45/50 new_cov=45/50 polymorphism_frequency=4.798e-01 polymorphism_score=295.1 prediction=polymorphism ref_cov=56/47 total_cov=101/97 RA 165 . NC_000913 581437 0 G A bias_e_value=2371330 bias_p_value=0.510881 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=5.2 fisher_strand_p_value=0.398572 frequency=4.876e-01 ks_quality_p_value=0.484814 major_base=G major_cov=56/47 major_frequency=5.124e-01 minor_base=A minor_cov=47/51 new_cov=47/51 polymorphism_frequency=4.876e-01 polymorphism_score=inf prediction=polymorphism ref_cov=56/47 total_cov=103/98 RA 166 . NC_000913 581440 0 C G bias_e_value=3839100 bias_p_value=0.827099 consensus_reject=FREQUENCY_CUTOFF consensus_score=12.5 fisher_strand_p_value=0.477371 frequency=4.924e-01 ks_quality_p_value=0.990795 major_base=C major_cov=54/46 major_frequency=5.076e-01 minor_base=G minor_cov=47/50 new_cov=47/50 polymorphism_frequency=4.924e-01 polymorphism_score=inf prediction=polymorphism ref_cov=54/46 total_cov=101/96 RA 167 . NC_000913 581443 0 C G bias_e_value=1407020 bias_p_value=0.303129 consensus_reject=FREQUENCY_CUTOFF consensus_score=10.4 fisher_strand_p_value=0.477366 frequency=4.975e-01 ks_quality_p_value=0.185426 major_base=C major_cov=53/46 major_frequency=5.025e-01 minor_base=G minor_cov=47/51 new_cov=47/51 polymorphism_frequency=4.975e-01 polymorphism_score=inf prediction=polymorphism ref_cov=53/46 total_cov=101/97 RA 168 . NC_000913 581455 0 G A bias_e_value=3520040 bias_p_value=0.75836 consensus_reject=FREQUENCY_CUTOFF consensus_score=23.1 fisher_strand_p_value=0.391205 frequency=5.026e-01 ks_quality_p_value=1 major_base=A major_cov=47/51 major_frequency=5.026e-01 minor_base=G minor_cov=53/44 new_cov=47/51 polymorphism_frequency=5.026e-01 polymorphism_score=315.2 prediction=polymorphism ref_cov=53/44 total_cov=100/95 RA 169 . NC_000913 581458 0 T C bias_e_value=3520040 bias_p_value=0.75836 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=8.8 fisher_strand_p_value=0.391205 frequency=5.000e-01 ks_quality_p_value=1 major_base=T major_cov=54/44 major_frequency=5.000e-01 minor_base=C minor_cov=47/51 new_cov=47/51 polymorphism_frequency=5.000e-01 polymorphism_score=inf prediction=polymorphism ref_cov=54/44 total_cov=101/95 RA 170 . NC_000913 581460 0 C A bias_e_value=3605130 bias_p_value=0.77669 consensus_reject=FREQUENCY_CUTOFF consensus_score=32.0 fisher_strand_p_value=0.477278 frequency=4.949e-01 ks_quality_p_value=0.861711 major_base=C major_cov=54/46 major_frequency=5.051e-01 minor_base=A minor_cov=47/51 new_cov=47/51 polymorphism_frequency=4.949e-01 polymorphism_score=301.2 prediction=polymorphism ref_cov=54/46 total_cov=101/97 RA 171 . NC_000913 581476 0 G C bias_e_value=1052260 bias_p_value=0.2267 consensus_reject=FREQUENCY_CUTOFF consensus_score=12.2 fisher_strand_p_value=0.317217 frequency=4.974e-01 ks_quality_p_value=0.186791 major_base=G major_cov=54/44 major_frequency=5.026e-01 minor_base=C minor_cov=46/51 new_cov=46/51 polymorphism_frequency=4.974e-01 polymorphism_score=inf prediction=polymorphism ref_cov=54/44 total_cov=100/97 RA 172 . NC_000913 581482 0 A G bias_e_value=3497420 bias_p_value=0.753486 consensus_reject=FREQUENCY_CUTOFF consensus_score=42.5 fisher_strand_p_value=0.388253 frequency=4.742e-01 ks_quality_p_value=0.994321 major_base=A major_cov=56/46 major_frequency=5.258e-01 minor_base=G minor_cov=44/48 new_cov=44/48 polymorphism_frequency=4.742e-01 polymorphism_score=297.3 prediction=polymorphism ref_cov=56/46 total_cov=100/94 RA 173 . NC_000913 581485 0 C G bias_e_value=4121010 bias_p_value=0.887833 consensus_reject=FREQUENCY_CUTOFF consensus_score=26.3 fisher_strand_p_value=0.565452 frequency=4.794e-01 ks_quality_p_value=1 major_base=C major_cov=54/47 major_frequency=5.206e-01 minor_base=G minor_cov=45/48 new_cov=45/48 polymorphism_frequency=4.794e-01 polymorphism_score=inf prediction=polymorphism ref_cov=54/47 total_cov=100/95 RA 174 . NC_000913 581488 0 A C bias_e_value=3836570 bias_p_value=0.826553 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-5.6 fisher_strand_p_value=0.472248 frequency=4.742e-01 ks_quality_p_value=1 major_base=A major_cov=55/47 major_frequency=5.258e-01 minor_base=C minor_cov=44/48 new_cov=44/48 polymorphism_frequency=4.742e-01 polymorphism_score=302.3 prediction=polymorphism ref_cov=55/47 total_cov=99/95 RA 175 . NC_000913 581512 0 A G bias_e_value=1733440 bias_p_value=0.373453 consensus_reject=FREQUENCY_CUTOFF consensus_score=62.2 fisher_strand_p_value=0.136617 frequency=4.560e-01 ks_quality_p_value=0.87499 major_base=A major_cov=57/42 major_frequency=5.440e-01 minor_base=G minor_cov=38/45 new_cov=38/45 polymorphism_frequency=4.560e-01 polymorphism_score=277.4 prediction=polymorphism ref_cov=57/42 total_cov=96/87 RA 176 . NC_000913 581513 0 C T bias_e_value=1722750 bias_p_value=0.371151 consensus_reject=FREQUENCY_CUTOFF consensus_score=45.6 fisher_strand_p_value=0.142031 frequency=4.486e-01 ks_quality_p_value=0.834023 major_base=C major_cov=58/44 major_frequency=5.514e-01 minor_base=T minor_cov=38/45 new_cov=38/45 polymorphism_frequency=4.486e-01 polymorphism_score=287.9 prediction=polymorphism ref_cov=58/44 total_cov=96/89 RA 177 . NC_000913 581518 0 C G bias_e_value=2300010 bias_p_value=0.495516 consensus_reject=FREQUENCY_CUTOFF consensus_score=74.5 fisher_strand_p_value=0.184451 frequency=4.462e-01 ks_quality_p_value=0.997677 major_base=C major_cov=58/45 major_frequency=5.538e-01 minor_base=G minor_cov=38/45 new_cov=38/45 polymorphism_frequency=4.462e-01 polymorphism_score=300.2 prediction=polymorphism ref_cov=58/45 total_cov=96/90 RA 178 . NC_000913 581524 0 G A bias_e_value=1141330 bias_p_value=0.245889 consensus_reject=FREQUENCY_CUTOFF consensus_score=89.8 fisher_strand_p_value=0.0661821 frequency=4.229e-01 ks_quality_p_value=1 major_base=G major_cov=56/45 major_frequency=5.771e-01 minor_base=A minor_cov=30/44 new_cov=30/44 polymorphism_frequency=4.229e-01 polymorphism_score=240.9 prediction=polymorphism ref_cov=56/45 total_cov=86/89 RA 179 . NC_000913 581527 0 G C bias_e_value=508167 bias_p_value=0.10948 consensus_reject=FREQUENCY_CUTOFF consensus_score=82.2 fisher_strand_p_value=0.0650575 frequency=4.277e-01 ks_quality_p_value=0.352384 major_base=G major_cov=55/44 major_frequency=5.723e-01 minor_base=C minor_cov=30/44 new_cov=30/44 polymorphism_frequency=4.277e-01 polymorphism_score=265.3 prediction=polymorphism ref_cov=55/44 total_cov=85/89 RA 180 . NC_000913 581530 0 C G bias_e_value=1664710 bias_p_value=0.358646 consensus_reject=FREQUENCY_CUTOFF consensus_score=84.5 fisher_strand_p_value=0.122244 frequency=4.353e-01 ks_quality_p_value=0.921624 major_base=C major_cov=51/45 major_frequency=5.647e-01 minor_base=G minor_cov=30/44 new_cov=30/44 polymorphism_frequency=4.353e-01 polymorphism_score=263.0 prediction=polymorphism ref_cov=51/45 total_cov=81/89 RA 181 . NC_000913 581548 0 C T bias_e_value=1071560 bias_p_value=0.230857 consensus_reject=FREQUENCY_CUTOFF consensus_score=153.3 fisher_strand_p_value=0.0607312 frequency=3.600e-01 ks_quality_p_value=1 major_base=C major_cov=52/44 major_frequency=6.400e-01 minor_base=T minor_cov=20/34 new_cov=20/34 polymorphism_frequency=3.600e-01 polymorphism_score=172.7 prediction=polymorphism ref_cov=52/44 total_cov=72/78 RA 182 . NC_000913 581550 0 G A bias_e_value=1402020 bias_p_value=0.302053 consensus_reject=FREQUENCY_CUTOFF consensus_score=157.5 fisher_strand_p_value=0.0898341 frequency=3.529e-01 ks_quality_p_value=0.980389 major_base=G major_cov=52/47 major_frequency=6.471e-01 minor_base=A minor_cov=20/34 new_cov=20/34 polymorphism_frequency=3.529e-01 polymorphism_score=171.9 prediction=polymorphism ref_cov=52/47 total_cov=72/81 RA 183 . NC_000913 581554 0 C T bias_e_value=1860740 bias_p_value=0.40088 consensus_reject=FREQUENCY_CUTOFF consensus_score=191.1 fisher_strand_p_value=0.132784 frequency=3.416e-01 ks_quality_p_value=1 major_base=C major_cov=53/53 major_frequency=6.584e-01 minor_base=T minor_cov=20/35 new_cov=20/35 polymorphism_frequency=3.416e-01 polymorphism_score=165.4 prediction=polymorphism ref_cov=53/53 total_cov=73/88 RA 184 . NC_000913 581560 0 C A bias_e_value=2437060 bias_p_value=0.525041 consensus_reject=FREQUENCY_CUTOFF consensus_score=238.9 fisher_strand_p_value=0.222229 frequency=3.137e-01 ks_quality_p_value=0.908817 major_base=C major_cov=54/51 major_frequency=6.863e-01 minor_base=A minor_cov=19/29 new_cov=19/29 polymorphism_frequency=3.137e-01 polymorphism_score=129.9 prediction=polymorphism ref_cov=54/51 total_cov=73/81 RA 185 . NC_000913 581569 0 G C bias_e_value=3457610 bias_p_value=0.744909 consensus_reject=FREQUENCY_CUTOFF consensus_score=312.5 fisher_strand_p_value=0.41778 frequency=2.190e-01 ks_quality_p_value=0.902735 major_base=G major_cov=55/52 major_frequency=7.810e-01 minor_base=C minor_cov=18/12 new_cov=18/12 polymorphism_frequency=2.190e-01 polymorphism_score=95.2 prediction=polymorphism ref_cov=55/52 total_cov=73/64 RA 186 . NC_000913 581572 0 T C bias_e_value=4043660 bias_p_value=0.871168 consensus_reject=FREQUENCY_CUTOFF consensus_score=310.0 fisher_strand_p_value=0.537457 frequency=2.148e-01 ks_quality_p_value=1 major_base=T major_cov=55/51 major_frequency=7.852e-01 minor_base=C minor_cov=17/12 new_cov=17/12 polymorphism_frequency=2.148e-01 polymorphism_score=64.7 prediction=polymorphism ref_cov=55/51 total_cov=73/63 RA 187 . NC_000913 581575 0 G T bias_e_value=3949160 bias_p_value=0.850809 consensus_reject=FREQUENCY_CUTOFF consensus_score=301.8 fisher_strand_p_value=0.534116 frequency=2.239e-01 ks_quality_p_value=0.947669 major_base=G major_cov=54/50 major_frequency=7.761e-01 minor_base=T minor_cov=18/12 new_cov=18/12 polymorphism_frequency=2.239e-01 polymorphism_score=78.8 prediction=polymorphism ref_cov=54/50 total_cov=73/62 RA 188 . NC_000913 581578 0 G T bias_e_value=3438550 bias_p_value=0.740803 consensus_reject=FREQUENCY_CUTOFF consensus_score=276.8 fisher_strand_p_value=0.534116 frequency=2.239e-01 ks_quality_p_value=0.698272 major_base=G major_cov=54/50 major_frequency=7.761e-01 minor_base=T minor_cov=18/12 new_cov=18/12 polymorphism_frequency=2.239e-01 polymorphism_score=75.2 prediction=polymorphism ref_cov=54/50 total_cov=73/62 RA 189 . NC_000913 590946 0 C T bias_e_value=991.76 bias_p_value=0.000213665 consensus_reject=FREQUENCY_CUTOFF consensus_score=178.6 fisher_strand_p_value=1.79097e-05 frequency=2.079e-01 ks_quality_p_value=1 major_base=C major_cov=42/38 major_frequency=7.921e-01 minor_base=T minor_cov=21/0 new_cov=21/0 polymorphism_frequency=2.079e-01 polymorphism_score=17.2 prediction=polymorphism ref_cov=42/38 total_cov=63/38 RA 190 . NC_000913 706279 0 A G bias_e_value=4542780 bias_p_value=0.978699 consensus_reject=FREQUENCY_CUTOFF consensus_score=385.5 fisher_strand_p_value=0.800826 frequency=6.772e-01 ks_quality_p_value=1 major_base=G major_cov=102/91 major_frequency=6.772e-01 minor_base=A minor_cov=47/45 new_cov=102/91 polymorphism_frequency=6.772e-01 polymorphism_score=288.1 prediction=polymorphism ref_cov=47/45 total_cov=149/136 RA 191 . NC_000913 706759 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=710.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=86/106 major_frequency=9.897e-01 minor_base=G minor_cov=1/1 new_cov=86/106 polymorphism_frequency=9.897e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/1 total_cov=87/107 RA 192 . NC_000913 708774 0 G A consensus_score=992.6 frequency=1 major_base=A major_cov=155/123 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=155/123 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=155/123 RA 193 . NC_000913 711968 0 C T bias_e_value=4613410 bias_p_value=0.993916 consensus_reject=FREQUENCY_CUTOFF consensus_score=297.1 fisher_strand_p_value=0.891738 frequency=6.483e-01 ks_quality_p_value=1 major_base=T major_cov=83/70 major_frequency=6.483e-01 minor_base=C minor_cov=46/37 new_cov=83/70 polymorphism_frequency=6.483e-01 polymorphism_score=252.5 prediction=polymorphism ref_cov=46/37 total_cov=129/107 RA 194 . NC_000913 847955 0 G A bias_e_value=0.0193927 bias_p_value=4.17797e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=243.3 fisher_strand_p_value=1.78179e-10 frequency=2.154e-01 ks_quality_p_value=1 major_base=G major_cov=65/37 major_frequency=7.846e-01 minor_base=A minor_cov=0/28 new_cov=0/28 polymorphism_frequency=2.154e-01 polymorphism_score=39.3 prediction=polymorphism ref_cov=65/37 total_cov=65/65 RA 195 . NC_000913 881614 0 C T consensus_score=340.4 frequency=1 major_base=T major_cov=37/57 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/57 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/57 RA 196 . NC_000913 997536 0 T C consensus_score=505.6 frequency=1 major_base=C major_cov=92/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/39 RA 197 . NC_000913 1023187 0 C T consensus_score=298.6 frequency=1 major_base=T major_cov=36/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/46 RA 198 . NC_000913 1169836 0 A G consensus_score=297.0 frequency=1 major_base=G major_cov=31/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/47 RA 199 . NC_000913 1189980 0 A G consensus_score=401.2 frequency=1 major_base=G major_cov=53/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/52 RA 200 . NC_000913 1196220 0 C T consensus_score=160.8 frequency=1 major_base=T major_cov=28/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/22 RA 201 . NC_000913 1196232 0 C T consensus_score=140.3 frequency=1 major_base=T major_cov=26/19 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/19 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/19 RA 202 . NC_000913 1196245 0 T C bias_e_value=4641650 bias_p_value=0.999999 consensus_score=127.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998839 major_base=C major_cov=23/18 major_frequency=9.762e-01 minor_base=G minor_cov=1/0 new_cov=23/18 polymorphism_frequency=9.762e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/0 total_cov=24/18 RA 203 . NC_000913 1196247 0 A G consensus_score=128.9 frequency=1 major_base=G major_cov=24/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/18 RA 204 . NC_000913 1196277 0 C T consensus_score=99.5 deleted=1 frequency=1 major_base=T major_cov=20/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/14 RA 205 . NC_000913 1196280 0 G C consensus_score=93.8 deleted=1 frequency=1 major_base=C major_cov=20/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/14 RA 206 . NC_000913 1196283 0 A G consensus_score=97.9 deleted=1 frequency=1 major_base=G major_cov=20/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/14 RA 207 . NC_000913 1196292 0 C T consensus_score=87.9 deleted=1 frequency=1 major_base=T major_cov=19/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/12 RA 208 . NC_000913 1196304 0 G A consensus_score=68.3 deleted=1 frequency=1 major_base=A major_cov=15/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/12 RA 209 . NC_000913 1196316 0 T A consensus_score=60.6 deleted=1 frequency=1 major_base=A major_cov=15/10 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/10 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/10 RA 210 . NC_000913 1196325 0 A G consensus_score=51.5 deleted=1 frequency=1 major_base=G major_cov=12/10 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/10 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/10 RA 211 . NC_000913 1196352 0 C A consensus_score=22.4 deleted=1 frequency=1 major_base=A major_cov=6/6 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=6/6 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=6/6 RA 212 . NC_000913 1301992 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=439.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=46/82 major_frequency=9.922e-01 minor_base=G minor_cov=0/1 new_cov=46/82 polymorphism_frequency=9.922e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/83 RA 213 . NC_000913 1306736 0 T G consensus_score=409.9 frequency=1 major_base=G major_cov=69/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=69/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/38 RA 214 . NC_000913 1334966 0 A C bias_e_value=0.000410487 bias_p_value=8.84355e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=281.4 fisher_strand_p_value=3.22034e-12 frequency=2.533e-01 ks_quality_p_value=1 major_base=A major_cov=46/66 major_frequency=7.467e-01 minor_base=C minor_cov=38/0 new_cov=38/0 polymorphism_frequency=2.533e-01 polymorphism_score=20.9 prediction=polymorphism ref_cov=46/66 total_cov=84/66 RA 215 . NC_000913 1337394 0 A G consensus_score=336.6 frequency=1 major_base=G major_cov=55/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/37 RA 216 . NC_000913 1358859 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=376.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=54/45 major_frequency=9.900e-01 minor_base=A minor_cov=1/0 new_cov=54/45 polymorphism_frequency=9.900e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/45 RA 217 . NC_000913 1419679 0 G C bias_e_value=4036200 bias_p_value=0.86956 consensus_score=334.4 fisher_strand_p_value=0.534878 frequency=1 ks_quality_p_value=1 major_base=C major_cov=57/33 major_frequency=9.783e-01 minor_base=A minor_cov=2/0 new_cov=57/33 polymorphism_frequency=9.783e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/33 RA 218 . NC_000913 1456421 0 G A bias_e_value=3938890 bias_p_value=0.848596 consensus_score=367.7 fisher_strand_p_value=0.50293 frequency=1 ks_quality_p_value=1 major_base=A major_cov=57/46 major_frequency=9.810e-01 minor_base=C minor_cov=2/0 new_cov=57/46 polymorphism_frequency=9.810e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/46 RA 219 . NC_000913 1470627 0 C A bias_e_value=5.49991e-07 bias_p_value=1.1849e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=309.6 fisher_strand_p_value=3.45462e-15 frequency=2.770e-01 ks_quality_p_value=1 major_base=C major_cov=36/71 major_frequency=7.230e-01 minor_base=A minor_cov=41/0 new_cov=41/0 polymorphism_frequency=2.770e-01 polymorphism_score=15.7 prediction=polymorphism ref_cov=36/71 total_cov=78/71 RA 220 . NC_000913 1502770 0 T C bias_e_value=0.151231 bias_p_value=3.25814e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=265.6 fisher_strand_p_value=1.52978e-09 frequency=2.047e-01 ks_quality_p_value=1 major_base=T major_cov=62/39 major_frequency=7.953e-01 minor_base=C minor_cov=0/26 new_cov=0/26 polymorphism_frequency=2.047e-01 polymorphism_score=21.3 prediction=polymorphism ref_cov=62/39 total_cov=62/66 RA 221 . NC_000913 1582030 0 A C consensus_score=518.7 frequency=1 major_base=C major_cov=55/81 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/81 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/81 RA 222 . NC_000913 1611547 0 C A bias_e_value=17081.8 bias_p_value=0.00368011 consensus_reject=FREQUENCY_CUTOFF consensus_score=221.8 fisher_strand_p_value=0.000419292 frequency=2.093e-01 ks_quality_p_value=1 major_base=C major_cov=28/40 major_frequency=7.907e-01 minor_base=A minor_cov=0/18 new_cov=0/18 polymorphism_frequency=2.093e-01 polymorphism_score=25.9 prediction=polymorphism ref_cov=28/40 total_cov=28/58 RA 223 . NC_000913 1643679 0 A T consensus_score=232.9 frequency=1 major_base=T major_cov=26/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/38 RA 224 . NC_000913 1652331 0 T C consensus_score=412.6 frequency=1 major_base=C major_cov=56/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/49 RA 225 . NC_000913 1668027 0 C A consensus_score=383.9 frequency=1 major_base=A major_cov=59/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/48 RA 226 . NC_000913 1687338 0 G T bias_e_value=0.0129292 bias_p_value=2.78547e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=170.2 fisher_strand_p_value=1.16686e-10 frequency=2.805e-01 ks_quality_p_value=1 major_base=G major_cov=44/15 major_frequency=7.195e-01 minor_base=T minor_cov=0/23 new_cov=0/23 polymorphism_frequency=2.805e-01 polymorphism_score=10.8 prediction=polymorphism ref_cov=44/15 total_cov=44/38 RA 227 . NC_000913 1812509 0 G T bias_e_value=0.000159579 bias_p_value=3.43797e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=402.6 fisher_strand_p_value=1.20879e-12 frequency=2.011e-01 ks_quality_p_value=1 major_base=G major_cov=85/54 major_frequency=7.989e-01 minor_base=T minor_cov=0/35 new_cov=0/35 polymorphism_frequency=2.011e-01 polymorphism_score=15.2 prediction=polymorphism ref_cov=85/54 total_cov=85/89 RA 228 . NC_000913 1820763 0 G T bias_e_value=0.00254976 bias_p_value=5.49321e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=160.3 fisher_strand_p_value=2.14885e-11 frequency=3.846e-01 ks_quality_p_value=1 major_base=G major_cov=38/26 major_frequency=6.154e-01 minor_base=T minor_cov=0/40 new_cov=0/40 polymorphism_frequency=3.846e-01 polymorphism_score=14.3 prediction=polymorphism ref_cov=38/26 total_cov=38/66 RA 229 . NC_000913 1922815 0 C A bias_e_value=7168.29 bias_p_value=0.00154434 consensus_reject=FREQUENCY_CUTOFF consensus_score=175.6 fisher_strand_p_value=0.000158386 frequency=3.148e-01 ks_quality_p_value=1 major_base=C major_cov=25/49 major_frequency=6.852e-01 minor_base=A minor_cov=25/9 new_cov=25/9 polymorphism_frequency=3.148e-01 polymorphism_score=20.4 prediction=polymorphism ref_cov=25/49 total_cov=50/58 RA 230 . NC_000913 1951320 0 G A bias_e_value=4283920 bias_p_value=0.922929 consensus_reject=FREQUENCY_CUTOFF consensus_score=158.5 fisher_strand_p_value=0.638582 frequency=5.989e-01 ks_quality_p_value=0.992864 major_base=A major_cov=37/75 major_frequency=5.989e-01 minor_base=G minor_cov=28/47 new_cov=37/75 polymorphism_frequency=5.989e-01 polymorphism_score=238.3 prediction=polymorphism ref_cov=28/47 total_cov=65/122 RA 231 . NC_000913 1951332 0 T C bias_e_value=2070670 bias_p_value=0.446105 consensus_reject=FREQUENCY_CUTOFF consensus_score=61.6 fisher_strand_p_value=0.156147 frequency=5.575e-01 ks_quality_p_value=1 major_base=C major_cov=31/66 major_frequency=5.575e-01 minor_base=T minor_cov=33/44 new_cov=31/66 polymorphism_frequency=5.575e-01 polymorphism_score=254.1 prediction=polymorphism ref_cov=33/44 total_cov=64/110 RA 232 . NC_000913 1951335 0 C T bias_e_value=2053570 bias_p_value=0.442422 consensus_reject=FREQUENCY_CUTOFF consensus_score=91.0 fisher_strand_p_value=0.15417 frequency=5.581e-01 ks_quality_p_value=1 major_base=T major_cov=31/65 major_frequency=5.581e-01 minor_base=C minor_cov=33/43 new_cov=31/65 polymorphism_frequency=5.581e-01 polymorphism_score=245.3 prediction=polymorphism ref_cov=33/43 total_cov=64/109 RA 233 . NC_000913 1951338 0 C T bias_e_value=1338790 bias_p_value=0.28843 consensus_reject=FREQUENCY_CUTOFF consensus_score=117.2 fisher_strand_p_value=0.0825386 frequency=5.640e-01 ks_quality_p_value=1 major_base=T major_cov=31/66 major_frequency=5.640e-01 minor_base=C minor_cov=34/41 new_cov=31/66 polymorphism_frequency=5.640e-01 polymorphism_score=225.1 prediction=polymorphism ref_cov=34/41 total_cov=65/107 RA 234 . NC_000913 1951386 0 C T bias_e_value=594884 bias_p_value=0.128162 consensus_reject=FREQUENCY_CUTOFF consensus_score=31.2 fisher_strand_p_value=0.0288549 frequency=4.558e-01 ks_quality_p_value=0.970827 major_base=C major_cov=40/40 major_frequency=5.442e-01 minor_base=T minor_cov=21/46 new_cov=21/46 polymorphism_frequency=4.558e-01 polymorphism_score=218.3 prediction=polymorphism ref_cov=40/40 total_cov=61/86 RA 235 . NC_000913 1951387 0 A C bias_e_value=422972 bias_p_value=0.0911253 consensus_reject=FREQUENCY_CUTOFF consensus_score=20.8 fisher_strand_p_value=0.0182025 frequency=4.490e-01 ks_quality_p_value=1 major_base=A major_cov=41/40 major_frequency=5.510e-01 minor_base=C minor_cov=20/46 new_cov=20/46 polymorphism_frequency=4.490e-01 polymorphism_score=220.4 prediction=polymorphism ref_cov=41/40 total_cov=61/86 RA 236 . NC_000913 1951412 0 A G bias_e_value=662983 bias_p_value=0.142833 consensus_reject=FREQUENCY_CUTOFF consensus_score=85.2 fisher_strand_p_value=0.0461076 frequency=4.211e-01 ks_quality_p_value=0.698374 major_base=A major_cov=44/44 major_frequency=5.789e-01 minor_base=G minor_cov=21/43 new_cov=21/43 polymorphism_frequency=4.211e-01 polymorphism_score=204.5 prediction=polymorphism ref_cov=44/44 total_cov=65/87 RA 237 . NC_000913 1951448 0 G T bias_e_value=938534 bias_p_value=0.202198 consensus_reject=FREQUENCY_CUTOFF consensus_score=196.7 fisher_strand_p_value=0.0520874 frequency=3.226e-01 ks_quality_p_value=0.975422 major_base=G major_cov=42/42 major_frequency=6.774e-01 minor_base=T minor_cov=12/28 new_cov=12/28 polymorphism_frequency=3.226e-01 polymorphism_score=104.6 prediction=polymorphism ref_cov=42/42 total_cov=54/70 RA 238 . NC_000913 1986220 0 A G bias_e_value=2073770 bias_p_value=0.446774 consensus_score=413.2 fisher_strand_p_value=0.156507 frequency=1 ks_quality_p_value=1 major_base=G major_cov=45/67 major_frequency=9.655e-01 minor_base=T minor_cov=0/4 new_cov=45/67 polymorphism_frequency=9.655e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/71 RA 239 . NC_000913 2040433 0 C A consensus_score=303.7 frequency=1 major_base=A major_cov=56/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/33 RA 240 . NC_000913 2043522 0 C A consensus_score=478.6 frequency=1 major_base=A major_cov=70/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=70/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=70/61 RA 241 . NC_000913 2105739 0 T A consensus_score=554.9 frequency=1 major_base=A major_cov=78/74 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=78/74 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=78/74 RA 242 . NC_000913 2159413 0 C T bias_e_value=391.263 bias_p_value=8.4294e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=83.0 fisher_strand_p_value=6.51338e-06 frequency=2.830e-01 ks_quality_p_value=1 major_base=C major_cov=13/25 major_frequency=7.170e-01 minor_base=T minor_cov=15/0 new_cov=15/0 polymorphism_frequency=2.830e-01 polymorphism_score=15.1 prediction=polymorphism ref_cov=13/25 total_cov=29/25 RA 243 . NC_000913 2159415 0 C G bias_e_value=82.1565 bias_p_value=1.76998e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=97.8 fisher_strand_p_value=1.21027e-06 frequency=2.791e-01 ks_quality_p_value=1 major_base=C major_cov=6/25 major_frequency=7.209e-01 minor_base=G minor_cov=12/0 new_cov=12/0 polymorphism_frequency=2.791e-01 polymorphism_score=12.2 prediction=polymorphism ref_cov=6/25 total_cov=29/25 RA 244 . NC_000913 2159421 0 A G bias_e_value=2.79907 bias_p_value=6.03034e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=83.8 fisher_strand_p_value=3.309e-08 frequency=3.333e-01 ks_quality_p_value=1 major_base=A major_cov=6/26 major_frequency=6.667e-01 minor_base=G minor_cov=16/0 new_cov=16/0 polymorphism_frequency=3.333e-01 polymorphism_score=10.1 prediction=polymorphism ref_cov=6/26 total_cov=30/26 RA 245 . NC_000913 2173363 0 C . consensus_score=421.2 frequency=1 major_base=. major_cov=32/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/48 RA 246 . NC_000913 2173364 0 C . consensus_score=421.2 frequency=1 major_base=. major_cov=32/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/48 RA 247 . NC_000913 2288418 0 G T bias_e_value=3.48139e-07 bias_p_value=7.50032e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=294.5 fisher_strand_p_value=2.15712e-15 frequency=2.741e-01 ks_quality_p_value=1 major_base=G major_cov=69/29 major_frequency=7.259e-01 minor_base=T minor_cov=0/37 new_cov=0/37 polymorphism_frequency=2.741e-01 polymorphism_score=14.2 prediction=polymorphism ref_cov=69/29 total_cov=69/66 RA 248 . NC_000913 2316887 0 G A bias_e_value=3773360 bias_p_value=0.812935 consensus_score=475.5 fisher_strand_p_value=0.454545 frequency=1 ks_quality_p_value=1 major_base=A major_cov=59/72 major_frequency=9.924e-01 minor_base=C minor_cov=1/0 new_cov=59/72 polymorphism_frequency=9.924e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/72 RA 249 . NC_000913 2316895 0 G A consensus_score=468.7 frequency=1 major_base=A major_cov=59/73 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/73 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/73 RA 250 . NC_000913 2326713 0 C A bias_e_value=0.00356579 bias_p_value=7.68216e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=208.6 fisher_strand_p_value=3.04674e-11 frequency=2.963e-01 ks_quality_p_value=1 major_base=C major_cov=27/49 major_frequency=7.037e-01 minor_base=A minor_cov=32/0 new_cov=32/0 polymorphism_frequency=2.963e-01 polymorphism_score=10.2 prediction=polymorphism ref_cov=27/49 total_cov=59/49 RA 251 . NC_000913 2365840 0 T G bias_e_value=0.109178 bias_p_value=2.35214e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=284.2 fisher_strand_p_value=1.08694e-09 frequency=2.378e-01 ks_quality_p_value=1 major_base=T major_cov=60/65 major_frequency=7.622e-01 minor_base=G minor_cov=0/39 new_cov=0/39 polymorphism_frequency=2.378e-01 polymorphism_score=11.2 prediction=polymorphism ref_cov=60/65 total_cov=60/104 RA 252 . NC_000913 2477258 0 G A bias_e_value=0.159744 bias_p_value=3.44153e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=185.2 fisher_strand_p_value=1.62025e-09 frequency=2.660e-01 ks_quality_p_value=1 major_base=G major_cov=24/45 major_frequency=7.340e-01 minor_base=A minor_cov=25/0 new_cov=25/0 polymorphism_frequency=2.660e-01 polymorphism_score=10.2 prediction=polymorphism ref_cov=24/45 total_cov=49/45 RA 253 . NC_000913 2477265 0 A C bias_e_value=1.19762e-09 bias_p_value=2.58017e-16 consensus_reject=FREQUENCY_CUTOFF consensus_score=125.2 fisher_strand_p_value=6.35553e-18 frequency=4.301e-01 ks_quality_p_value=1 major_base=A major_cov=9/44 major_frequency=5.699e-01 minor_base=C minor_cov=40/0 new_cov=40/0 polymorphism_frequency=4.301e-01 polymorphism_score=32.6 prediction=polymorphism ref_cov=9/44 total_cov=49/44 RA 254 . NC_000913 2704512 0 C A bias_e_value=569.016 bias_p_value=0.000122589 consensus_reject=FREQUENCY_CUTOFF consensus_score=94.1 fisher_strand_p_value=9.77958e-06 frequency=3.226e-01 ks_quality_p_value=1 major_base=C major_cov=19/23 major_frequency=6.774e-01 minor_base=A minor_cov=20/0 new_cov=20/0 polymorphism_frequency=3.226e-01 polymorphism_score=12.8 prediction=polymorphism ref_cov=19/23 total_cov=39/23 RA 255 . NC_000913 2745600 0 A G bias_e_value=3909460 bias_p_value=0.842257 consensus_score=306.7 fisher_strand_p_value=0.493827 frequency=1 ks_quality_p_value=1 major_base=G major_cov=39/41 major_frequency=9.877e-01 minor_base=A minor_cov=1/0 new_cov=39/41 polymorphism_frequency=9.877e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=40/41 RA 256 . NC_000913 2774947 0 G A bias_e_value=3919830 bias_p_value=0.844489 consensus_score=599.3 fisher_strand_p_value=0.497006 frequency=1 ks_quality_p_value=1 major_base=A major_cov=82/84 major_frequency=9.881e-01 minor_base=C minor_cov=2/0 new_cov=82/84 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/84 RA 257 . NC_000913 2817991 0 A C bias_e_value=285817 bias_p_value=0.0615765 consensus_reject=FREQUENCY_CUTOFF consensus_score=115.7 fisher_strand_p_value=0.0321333 frequency=2.083e-01 ks_quality_p_value=0.349018 major_base=A major_cov=16/41 major_frequency=7.917e-01 minor_base=C minor_cov=9/6 new_cov=9/6 polymorphism_frequency=2.083e-01 polymorphism_score=29.7 prediction=polymorphism ref_cov=16/41 total_cov=25/47 RA 258 . NC_000913 2818018 0 T C bias_e_value=3105170 bias_p_value=0.66898 consensus_reject=FREQUENCY_CUTOFF consensus_score=129.8 fisher_strand_p_value=0.306528 frequency=2.069e-01 ks_quality_p_value=1 major_base=T major_cov=14/32 major_frequency=7.931e-01 minor_base=C minor_cov=6/6 new_cov=6/6 polymorphism_frequency=2.069e-01 polymorphism_score=18.8 prediction=polymorphism ref_cov=14/32 total_cov=20/39 RA 259 . NC_000913 2855852 0 C A bias_e_value=6.94577 bias_p_value=1.4964e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=181.2 fisher_strand_p_value=8.66932e-08 frequency=2.439e-01 ks_quality_p_value=1 major_base=C major_cov=21/41 major_frequency=7.561e-01 minor_base=A minor_cov=20/0 new_cov=20/0 polymorphism_frequency=2.439e-01 polymorphism_score=11.8 prediction=polymorphism ref_cov=21/41 total_cov=41/42 RA 260 . NC_000913 2867332 0 C A consensus_score=418.2 frequency=1 major_base=A major_cov=72/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=72/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=72/46 RA 261 . NC_000913 2867455 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=500.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=96/46 major_frequency=9.930e-01 minor_base=C minor_cov=1/0 new_cov=96/46 polymorphism_frequency=9.930e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=97/46 RA 262 . NC_000913 2895349 0 G T bias_e_value=15.307 bias_p_value=3.29774e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=136.8 fisher_strand_p_value=2.00827e-07 frequency=3.125e-01 ks_quality_p_value=1 major_base=G major_cov=31/24 major_frequency=6.875e-01 minor_base=T minor_cov=0/25 new_cov=0/25 polymorphism_frequency=3.125e-01 polymorphism_score=13.3 prediction=polymorphism ref_cov=31/24 total_cov=31/49 RA 263 . NC_000913 3054886 0 G T bias_e_value=6.80169e-07 bias_p_value=1.46536e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=106.0 fisher_strand_p_value=4.29974e-15 frequency=3.875e-01 ks_quality_p_value=1 major_base=G major_cov=8/41 major_frequency=6.125e-01 minor_base=T minor_cov=31/0 new_cov=31/0 polymorphism_frequency=3.875e-01 polymorphism_score=34.2 prediction=polymorphism ref_cov=8/41 total_cov=39/41 RA 264 . NC_000913 3054894 0 G T bias_e_value=0.0192337 bias_p_value=4.14371e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=82.9 fisher_strand_p_value=1.76653e-10 frequency=3.247e-01 ks_quality_p_value=1 major_base=G major_cov=14/38 major_frequency=6.753e-01 minor_base=T minor_cov=25/0 new_cov=25/0 polymorphism_frequency=3.247e-01 polymorphism_score=28.3 prediction=polymorphism ref_cov=14/38 total_cov=39/38 RA 265 . NC_000913 3060221 0 G A consensus_score=303.8 frequency=1 major_base=A major_cov=40/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/46 RA 266 . NC_000913 3060380 0 G T consensus_score=345.0 frequency=1 major_base=T major_cov=42/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/54 RA 267 . NC_000913 3184065 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=364.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=51/49 major_frequency=9.901e-01 minor_base=C minor_cov=1/0 new_cov=51/49 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/49 RA 268 . NC_000913 3226224 0 G T bias_e_value=0.00118138 bias_p_value=2.54517e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=202.2 fisher_strand_p_value=9.65411e-12 frequency=3.043e-01 ks_quality_p_value=1 major_base=G major_cov=50/30 major_frequency=6.957e-01 minor_base=T minor_cov=0/35 new_cov=0/35 polymorphism_frequency=3.043e-01 polymorphism_score=12.4 prediction=polymorphism ref_cov=50/30 total_cov=50/65 RA 269 . NC_000913 3388041 0 T G consensus_score=428.9 frequency=1 major_base=G major_cov=71/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=71/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=71/41 RA 270 . NC_000913 3560455 1 . G consensus_score=362.4 frequency=1 major_base=G major_cov=43/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/50 RA 271 . NC_000913 3602706 0 C A bias_e_value=34842.2 bias_p_value=0.00750642 consensus_reject=FREQUENCY_CUTOFF consensus_score=134.3 fisher_strand_p_value=0.000942148 frequency=2.000e-01 ks_quality_p_value=1 major_base=C major_cov=36/20 major_frequency=8.000e-01 minor_base=A minor_cov=2/12 new_cov=2/12 polymorphism_frequency=2.000e-01 polymorphism_score=15.2 prediction=polymorphism ref_cov=36/20 total_cov=38/32 RA 272 . NC_000913 3603627 0 G T consensus_score=388.9 frequency=1 major_base=T major_cov=59/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/53 RA 273 . NC_000913 3707947 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=444.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=75/52 major_frequency=9.922e-01 minor_base=C minor_cov=1/0 new_cov=75/52 polymorphism_frequency=9.922e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=76/52 RA 274 . NC_000913 3741871 0 G T bias_e_value=0.205488 bias_p_value=4.42705e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=245.9 fisher_strand_p_value=2.1105e-09 frequency=2.281e-01 ks_quality_p_value=1 major_base=G major_cov=54/34 major_frequency=7.719e-01 minor_base=T minor_cov=0/26 new_cov=0/26 polymorphism_frequency=2.281e-01 polymorphism_score=12.6 prediction=polymorphism ref_cov=54/34 total_cov=54/60 RA 275 . NC_000913 3768435 0 C A bias_e_value=2.29846e-08 bias_p_value=4.95182e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=486.5 fisher_strand_p_value=1.3182e-16 frequency=2.108e-01 ks_quality_p_value=1 major_base=C major_cov=57/104 major_frequency=7.892e-01 minor_base=A minor_cov=43/0 new_cov=43/0 polymorphism_frequency=2.108e-01 polymorphism_score=12.9 prediction=polymorphism ref_cov=57/104 total_cov=100/104 RA 276 . NC_000913 3837039 0 G T consensus_score=553.2 frequency=1 major_base=T major_cov=55/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/101 RA 277 . NC_000913 3844617 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=318.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=40/47 major_frequency=9.886e-01 minor_base=G minor_cov=0/1 new_cov=40/47 polymorphism_frequency=9.886e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=40/48 RA 278 . NC_000913 3911533 0 C A bias_e_value=0.000323082 bias_p_value=6.9605e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=224.5 fisher_strand_p_value=2.51191e-12 frequency=3.333e-01 ks_quality_p_value=1 major_base=C major_cov=48/52 major_frequency=6.667e-01 minor_base=A minor_cov=50/0 new_cov=50/0 polymorphism_frequency=3.333e-01 polymorphism_score=35.5 prediction=polymorphism ref_cov=48/52 total_cov=98/52 RA 279 . NC_000913 3953650 0 A G bias_e_value=78536.4 bias_p_value=0.0169199 consensus_reject=FREQUENCY_CUTOFF consensus_score=135.0 fisher_strand_p_value=0.00240704 frequency=2.131e-01 ks_quality_p_value=1 major_base=A major_cov=27/21 major_frequency=7.869e-01 minor_base=G minor_cov=13/0 new_cov=13/0 polymorphism_frequency=2.131e-01 polymorphism_score=10.0 prediction=polymorphism ref_cov=27/21 total_cov=40/21 RA 280 . NC_000913 4136467 0 A C bias_e_value=1489.62 bias_p_value=0.000320924 consensus_reject=FREQUENCY_CUTOFF consensus_score=183.5 fisher_strand_p_value=2.79419e-05 frequency=2.353e-01 ks_quality_p_value=1 major_base=A major_cov=33/32 major_frequency=7.647e-01 minor_base=C minor_cov=20/0 new_cov=20/0 polymorphism_frequency=2.353e-01 polymorphism_score=10.2 prediction=polymorphism ref_cov=33/32 total_cov=56/33 RA 281 . NC_000913 4183829 0 T C bias_e_value=3819540 bias_p_value=0.822884 consensus_score=340.7 fisher_strand_p_value=0.467391 frequency=1 ks_quality_p_value=1 major_base=C major_cov=42/49 major_frequency=9.891e-01 minor_base=A minor_cov=1/0 new_cov=42/49 polymorphism_frequency=9.891e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/49 RA 282 . NC_000913 4223638 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=434.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=50/64 major_frequency=9.913e-01 minor_base=T minor_cov=0/1 new_cov=50/64 polymorphism_frequency=9.913e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=51/65 RA 283 . NC_000913 4248791 0 G A consensus_score=395.8 frequency=1 major_base=A major_cov=39/68 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/68 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/68 RA 284 . NC_000913 4261040 0 C A bias_e_value=0.00207809 bias_p_value=4.47704e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=400.2 fisher_strand_p_value=1.73688e-11 frequency=2.088e-01 ks_quality_p_value=1 major_base=C major_cov=66/78 major_frequency=7.912e-01 minor_base=A minor_cov=38/0 new_cov=38/0 polymorphism_frequency=2.088e-01 polymorphism_score=11.6 prediction=polymorphism ref_cov=66/78 total_cov=104/78 RA 285 . NC_000913 4283161 0 A T consensus_score=404.2 frequency=1 major_base=T major_cov=40/68 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/68 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/68 RA 286 . NC_000913 4296268 0 T C bias_e_value=3036980 bias_p_value=0.654288 consensus_reject=FREQUENCY_CUTOFF consensus_score=97.0 fisher_strand_p_value=0.294311 frequency=2.308e-01 ks_quality_p_value=1 major_base=T major_cov=25/15 major_frequency=7.692e-01 minor_base=C minor_cov=10/2 new_cov=10/2 polymorphism_frequency=2.308e-01 polymorphism_score=21.4 prediction=polymorphism ref_cov=25/15 total_cov=35/17 RA 287 . NC_000913 4296380 1 . C bias_e_value=4641650 bias_p_value=1 consensus_score=268.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999658 major_base=C major_cov=52/24 major_frequency=9.870e-01 minor_base=. minor_cov=1/0 new_cov=52/24 polymorphism_frequency=9.870e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=1/0 total_cov=53/24 RA 288 . NC_000913 4296380 2 . G bias_e_value=4641650 bias_p_value=0.999999 consensus_score=265.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998634 major_base=G major_cov=52/24 major_frequency=9.870e-01 minor_base=. minor_cov=1/0 new_cov=52/24 polymorphism_frequency=9.870e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=1/0 total_cov=53/24 RA 289 . NC_000913 4360965 0 C A bias_e_value=3.45548e-08 bias_p_value=7.44451e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=354.9 fisher_strand_p_value=2.00411e-16 frequency=2.303e-01 ks_quality_p_value=1 major_base=C major_cov=31/86 major_frequency=7.697e-01 minor_base=A minor_cov=35/0 new_cov=35/0 polymorphism_frequency=2.303e-01 polymorphism_score=22.7 prediction=polymorphism ref_cov=31/86 total_cov=66/86 RA 290 . NC_000913 4440855 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=407.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=65/49 major_frequency=9.913e-01 minor_base=C minor_cov=1/0 new_cov=65/49 polymorphism_frequency=9.913e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/49 RA 291 . NC_000913 4441042 0 A T consensus_score=304.9 frequency=1 major_base=T major_cov=38/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/52 RA 292 . NC_000913 4510238 0 T G bias_e_value=615630 bias_p_value=0.132632 consensus_score=532.0 fisher_strand_p_value=0.029271 frequency=1 ks_quality_p_value=1 major_base=G major_cov=90/61 major_frequency=9.742e-01 minor_base=T minor_cov=0/4 new_cov=90/61 polymorphism_frequency=9.742e-01 polymorphism_score=NA prediction=consensus ref_cov=0/4 total_cov=90/66 RA 293 . NC_000913 4640877 0 G T consensus_score=551.9 frequency=1 major_base=T major_cov=59/93 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/93 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/93 MC 294 . NC_000913 257908 258683 766 0 left_inside_cov=0 left_outside_cov=132 right_inside_cov=3 right_outside_cov=136 MC 295 . NC_000913 674957 688840 0 994 left_inside_cov=0 left_outside_cov=112 right_inside_cov=33 right_outside_cov=37 MC 296 . NC_000913 1196277 1211440 0 0 left_inside_cov=34 left_outside_cov=39 right_inside_cov=34 right_outside_cov=36 MC 297 . NC_000913 1299499 1300697 1198 0 left_inside_cov=0 left_outside_cov=142 right_inside_cov=0 right_outside_cov=142 MC 298 . NC_000913 1962197 1979451 0 0 left_inside_cov=1 left_outside_cov=134 right_inside_cov=0 right_outside_cov=166 MC 299 . NC_000913 2755518 2755710 0 0 left_inside_cov=35 left_outside_cov=36 right_inside_cov=35 right_outside_cov=39 MC 300 . NC_000913 3096674 3131175 0 1034 left_inside_cov=0 left_outside_cov=111 right_inside_cov=35 right_outside_cov=36 MC 301 . NC_000913 3423825 3424496 408 257 left_inside_cov=35 left_outside_cov=36 right_inside_cov=34 right_outside_cov=36 MC 302 . NC_000913 3815859 3815940 0 0 left_inside_cov=0 left_outside_cov=109 right_inside_cov=4 right_outside_cov=112 JC 303 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 coverage_minus=54 coverage_plus=65 flanking_left=300 flanking_right=300 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=299 key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0 max_left=294 max_left_minus=294 max_left_plus=237 max_min_left=149 max_min_left_minus=149 max_min_left_plus=148 max_min_right=146 max_min_right_minus=146 max_min_right_plus=134 max_pos_hash_score=598 max_right=296 max_right_minus=266 max_right_plus=296 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.17 new_junction_read_count=122 polymorphism_frequency=1.000e+00 pos_hash_score=68 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=299 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=299 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=119 JC 304 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=60 coverage_plus=71 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=291 key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0 max_left=291 max_left_minus=291 max_left_plus=282 max_min_left=143 max_min_left_minus=133 max_min_left_plus=143 max_min_right=144 max_min_right_minus=135 max_min_right_plus=144 max_pos_hash_score=582 max_right=290 max_right_minus=283 max_right_plus=290 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.31 new_junction_read_count=132 polymorphism_frequency=1.000e+00 pos_hash_score=82 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=299 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=131 JC 305 . NC_000913 273955 1 NC_000913 674956 -1 0 alignment_overlap=0 coverage_minus=51 coverage_plus=57 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__273955__1__NC_000913__674956__-1__0____300__300__1__0 max_left=293 max_left_minus=278 max_left_plus=293 max_min_left=145 max_min_left_minus=132 max_min_left_plus=145 max_min_right=146 max_min_right_minus=138 max_min_right_plus=146 max_pos_hash_score=598 max_right=299 max_right_minus=296 max_right_plus=299 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.06 new_junction_read_count=110 polymorphism_frequency=1.000e+00 pos_hash_score=75 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=299 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=108 JC 306 . NC_000913 381260 1 NC_000913 932366 -1 0 alignment_overlap=0 coverage_minus=71 coverage_plus=41 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__381260__1__NC_000913__932366__-1__0____300__300__1__0 max_left=296 max_left_minus=296 max_left_plus=296 max_min_left=147 max_min_left_minus=147 max_min_left_plus=146 max_min_right=141 max_min_right_minus=139 max_min_right_plus=141 max_pos_hash_score=598 max_right=298 max_right_minus=297 max_right_plus=298 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.09 new_junction_read_count=113 polymorphism_frequency=1.000e+00 pos_hash_score=74 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=112 JC 307 . NC_000913 382590 -1 NC_000913 578018 -1 0 alignment_overlap=0 coverage_minus=64 coverage_plus=44 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__382590__-1__NC_000913__578018__-1__0____300__300__1__0 max_left=296 max_left_minus=289 max_left_plus=296 max_min_left=149 max_min_left_minus=149 max_min_left_plus=147 max_min_right=148 max_min_right_minus=140 max_min_right_plus=148 max_pos_hash_score=598 max_right=296 max_right_minus=281 max_right_plus=296 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.10 new_junction_read_count=114 polymorphism_frequency=9.912e-01 pos_hash_score=75 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=108 JC 308 . NC_000913 481900 1 NC_000913 481906 -1 0 alignment_overlap=0 coverage_minus=45 coverage_plus=42 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__481900__1__NC_000913__481906__-1__0____300__300__0__0 max_left=297 max_left_minus=288 max_left_plus=297 max_min_left=142 max_min_left_minus=139 max_min_left_plus=142 max_min_right=141 max_min_right_minus=141 max_min_right_plus=139 max_pos_hash_score=598 max_right=299 max_right_minus=295 max_right_plus=299 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.86 new_junction_read_count=89 polymorphism_frequency=9.674e-01 pos_hash_score=65 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=299 side_1_read_count=2 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.04 side_2_overlap=0 side_2_possible_overlap_registers=299 side_2_read_count=4 side_2_redundant=0 total_non_overlap_reads=87 JC 309 . NC_000913 566774 -1 NC_000913 568036 1 0 alignment_overlap=2 coverage_minus=8 coverage_plus=17 flanking_left=300 flanking_right=300 frequency=3.469e-01 junction_possible_overlap_registers=297 key=NC_000913__566774__-1__NC_000913__568034__1__2____300__300__0__0 max_left=225 max_left_minus=224 max_left_plus=225 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=133 max_min_right_minus=133 max_min_right_plus=124 max_pos_hash_score=594 max_right=133 max_right_minus=133 max_right_plus=124 neg_log10_pos_hash_p_value=5.2 new_junction_coverage=0.52 new_junction_read_count=54 polymorphism_frequency=3.469e-01 pos_hash_score=15 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.96 side_1_overlap=2 side_1_possible_overlap_registers=299 side_1_read_count=100 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.01 side_2_overlap=0 side_2_possible_overlap_registers=297 side_2_read_count=104 side_2_redundant=0 total_non_overlap_reads=25 JC 310 . NC_000913 578014 1 NC_000913 1469240 -1 0 alignment_overlap=1 coverage_minus=44 coverage_plus=63 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__578013__1__NC_000913__1469240__-1__1____300__300__0__1 max_left=295 max_left_minus=295 max_left_plus=295 max_min_left=147 max_min_left_minus=120 max_min_left_plus=147 max_min_right=146 max_min_right_minus=141 max_min_right_plus=146 max_pos_hash_score=596 max_right=295 max_right_minus=295 max_right_plus=292 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.04 new_junction_read_count=108 polymorphism_frequency=1.000e+00 pos_hash_score=75 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=107 JC 311 . NC_000913 696504 -1 NC_000913 696940 1 0 alignment_overlap=29 coverage_minus=4 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.009e-01 junction_possible_overlap_registers=270 key=NC_000913__696504__-1__NC_000913__696911__1__29____300__300__0__0 max_left=249 max_left_minus=249 max_left_plus=209 max_min_left=127 max_min_left_minus=127 max_min_left_plus=127 max_min_right=86 max_min_right_minus=86 max_min_right_plus=55 max_pos_hash_score=540 max_right=260 max_right_minus=131 max_right_plus=260 neg_log10_pos_hash_p_value=7.4 new_junction_coverage=0.09 new_junction_read_count=8 polymorphism_frequency=1.009e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.73 side_1_overlap=29 side_1_possible_overlap_registers=299 side_1_read_count=76 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.79 side_2_overlap=0 side_2_possible_overlap_registers=270 side_2_read_count=74 side_2_redundant=0 total_non_overlap_reads=8 JC 312 . NC_000913 696506 -1 NC_000913 696942 1 0 alignment_overlap=1 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.687e-02 junction_possible_overlap_registers=298 key=NC_000913__696506__-1__NC_000913__696941__1__1____300__300__0__0 max_left=192 max_left_minus=192 max_left_plus=139 max_min_left=139 max_min_left_minus=0 max_min_left_plus=139 max_min_right=107 max_min_right_minus=107 max_min_right_plus=0 max_pos_hash_score=596 max_right=258 max_right_minus=107 max_right_plus=258 neg_log10_pos_hash_p_value=10.2 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.687e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.72 side_1_overlap=1 side_1_possible_overlap_registers=299 side_1_read_count=75 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.79 side_2_overlap=0 side_2_possible_overlap_registers=298 side_2_read_count=82 side_2_redundant=0 total_non_overlap_reads=3 JC 313 . NC_000913 700754 1 NC_000913 1951242 1 0 alignment_overlap=11 coverage_minus=66 coverage_plus=83 flanking_left=300 flanking_right=300 frequency=6.515e-01 junction_possible_overlap_registers=288 key=NC_000913__700754__1__NC_000913__1951231__1__11____300__300__0__0 max_left=288 max_left_minus=278 max_left_plus=288 max_min_left=131 max_min_left_minus=114 max_min_left_plus=131 max_min_right=144 max_min_right_minus=144 max_min_right_plus=137 max_pos_hash_score=576 max_right=249 max_right_minus=249 max_right_plus=245 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.63 new_junction_read_count=163 polymorphism_frequency=6.515e-01 pos_hash_score=88 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.95 side_1_overlap=11 side_1_possible_overlap_registers=299 side_1_read_count=99 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.79 side_2_overlap=0 side_2_possible_overlap_registers=288 side_2_read_count=79 side_2_redundant=0 total_non_overlap_reads=149 JC 314 . NC_000913 781222 -1 NC_000913 781653 1 0 alignment_overlap=76 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=9.874e-02 junction_possible_overlap_registers=223 key=NC_000913__781222__-1__NC_000913__781577__1__76____300__300__0__0 max_left=220 max_left_minus=220 max_left_plus=143 max_min_left=62 max_min_left_minus=0 max_min_left_plus=62 max_min_right=81 max_min_right_minus=76 max_min_right_plus=81 max_pos_hash_score=446 max_right=147 max_right_minus=76 max_right_plus=147 neg_log10_pos_hash_p_value=7.3 new_junction_coverage=0.06 new_junction_read_count=5 polymorphism_frequency=9.874e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.52 side_1_overlap=76 side_1_possible_overlap_registers=299 side_1_read_count=54 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.66 side_2_overlap=0 side_2_possible_overlap_registers=223 side_2_read_count=51 side_2_redundant=0 total_non_overlap_reads=5 JC 315 . NC_000913 781760 1 NC_000913 2521328 -1 -49 alignment_overlap=-49 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=1.126e-01 junction_possible_overlap_registers=250 key=NC_000913__781760__1__NC_000913__2521328__-1__-49__TGGCGCAACGTTATCCTTCACGCTTAACATCTGAGTTTGATGTTAAAAC__300__300__0__0 max_left=156 max_left_minus=156 max_left_plus=133 max_min_left=103 max_min_left_minus=0 max_min_left_plus=103 max_min_right=114 max_min_right_minus=105 max_min_right_plus=114 max_pos_hash_score=500 max_right=149 max_right_minus=105 max_right_plus=149 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.08 new_junction_read_count=7 polymorphism_frequency=1.126e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.75 side_1_overlap=0 side_1_possible_overlap_registers=299 side_1_read_count=78 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.52 side_2_overlap=0 side_2_possible_overlap_registers=299 side_2_read_count=54 side_2_redundant=0 total_non_overlap_reads=4 unique_read_sequence=TGGCGCAACGTTATCCTTCACGCTTAACATCTGAGTTTGATGTTAAAAC JC 316 . NC_000913 932362 1 NC_000913 1467910 1 0 alignment_overlap=1 coverage_minus=42 coverage_plus=51 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__932361__1__NC_000913__1467910__1__1____300__300__0__1 max_left=297 max_left_minus=297 max_left_plus=295 max_min_left=141 max_min_left_minus=126 max_min_left_plus=141 max_min_right=138 max_min_right_minus=137 max_min_right_plus=138 max_pos_hash_score=596 max_right=284 max_right_minus=282 max_right_plus=284 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.93 new_junction_read_count=96 polymorphism_frequency=1.000e+00 pos_hash_score=64 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=93 JC 317 . NC_000913 1094245 1 NC_000913 3817269 -1 0 alignment_overlap=0 coverage_minus=50 coverage_plus=46 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__1094245__1__NC_000913__3817269__-1__0____300__300__1__0 max_left=296 max_left_minus=296 max_left_plus=291 max_min_left=147 max_min_left_minus=147 max_min_left_plus=144 max_min_right=144 max_min_right_minus=140 max_min_right_plus=144 max_pos_hash_score=598 max_right=299 max_right_minus=284 max_right_plus=299 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.95 new_junction_read_count=99 polymorphism_frequency=9.899e-01 pos_hash_score=70 prediction=consensus read_count_offset=3 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=296 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=96 JC 318 . NC_000913 1286906 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=9.490e-02 junction_possible_overlap_registers=279 key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=271 max_left_minus=271 max_left_plus=244 max_min_left=4 max_min_left_minus=0 max_min_left_plus=4 max_min_right=49 max_min_right_minus=27 max_min_right_plus=49 max_pos_hash_score=558 max_right=276 max_right_minus=27 max_right_plus=276 neg_log10_pos_hash_p_value=8.1 new_junction_coverage=0.06 new_junction_read_count=6 polymorphism_frequency=9.490e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.65 side_1_overlap=20 side_1_possible_overlap_registers=299 side_1_read_count=68 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.53 side_2_overlap=0 side_2_possible_overlap_registers=279 side_2_read_count=51 side_2_redundant=0 total_non_overlap_reads=6 JC 319 . NC_000913 1287084 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=8.758e-02 junction_possible_overlap_registers=279 key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=163 max_left_minus=163 max_left_plus=78 max_min_left=119 max_min_left_minus=119 max_min_left_plus=78 max_min_right=117 max_min_right_minus=117 max_min_right_plus=0 max_pos_hash_score=558 max_right=276 max_right_minus=161 max_right_plus=276 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.05 new_junction_read_count=5 polymorphism_frequency=8.758e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.55 side_1_overlap=20 side_1_possible_overlap_registers=299 side_1_read_count=57 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.53 side_2_overlap=0 side_2_possible_overlap_registers=279 side_2_read_count=51 side_2_redundant=0 total_non_overlap_reads=4 JC 320 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=64 coverage_plus=75 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0 max_left=294 max_left_minus=287 max_left_plus=294 max_min_left=147 max_min_left_minus=139 max_min_left_plus=147 max_min_right=140 max_min_right_minus=139 max_min_right_plus=140 max_pos_hash_score=590 max_right=291 max_right_minus=283 max_right_plus=291 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.39 new_junction_read_count=142 polymorphism_frequency=1.000e+00 pos_hash_score=93 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=299 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=139 JC 321 . NC_000913 1467910 1 NC_000913 1596351 -1 0 alignment_overlap=1 coverage_minus=72 coverage_plus=41 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__1467910__1__NC_000913__1596352__-1__1____300__300__1__0 max_left=296 max_left_minus=275 max_left_plus=296 max_min_left=148 max_min_left_minus=148 max_min_left_plus=115 max_min_right=146 max_min_right_minus=146 max_min_right_plus=146 max_pos_hash_score=596 max_right=298 max_right_minus=298 max_right_plus=293 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=1.12 new_junction_read_count=116 polymorphism_frequency=1.000e+00 pos_hash_score=62 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=113 JC 322 . NC_000913 1469240 -1 NC_000913 1596347 1 0 alignment_overlap=0 coverage_minus=59 coverage_plus=57 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__1469240__-1__NC_000913__1596347__1__0____300__300__1__0 max_left=297 max_left_minus=296 max_left_plus=297 max_min_left=141 max_min_left_minus=140 max_min_left_plus=141 max_min_right=149 max_min_right_minus=137 max_min_right_plus=149 max_pos_hash_score=598 max_right=299 max_right_minus=299 max_right_plus=291 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.15 new_junction_read_count=119 polymorphism_frequency=9.915e-01 pos_hash_score=73 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=116 JC 323 . NC_000913 1909811 1 NC_000913 2070271 -1 0 alignment_overlap=1 coverage_minus=49 coverage_plus=66 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__1909810__1__NC_000913__2070271__-1__1____300__300__0__1 max_left=297 max_left_minus=297 max_left_plus=297 max_min_left=148 max_min_left_minus=148 max_min_left_plus=137 max_min_right=148 max_min_right_minus=148 max_min_right_plus=144 max_pos_hash_score=596 max_right=296 max_right_minus=296 max_right_plus=296 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.13 new_junction_read_count=117 polymorphism_frequency=1.000e+00 pos_hash_score=80 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=115 JC 324 . NC_000913 1909815 -1 NC_000913 2068941 1 0 alignment_overlap=0 coverage_minus=50 coverage_plus=48 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__1909815__-1__NC_000913__2068941__1__0____300__300__0__1 max_left=298 max_left_minus=298 max_left_plus=298 max_min_left=145 max_min_left_minus=145 max_min_left_plus=140 max_min_right=150 max_min_right_minus=150 max_min_right_plus=147 max_pos_hash_score=598 max_right=279 max_right_minus=279 max_right_plus=276 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.96 new_junction_read_count=100 polymorphism_frequency=9.516e-01 pos_hash_score=72 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.05 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=5 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=98 JC 325 . NC_000913 1962196 -1 NC_000913 1979270 -1 0 alignment_overlap=1 coverage_minus=47 coverage_plus=80 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__1962197__-1__NC_000913__1979270__-1__1____300__300__0__1 max_left=298 max_left_minus=298 max_left_plus=298 max_min_left=149 max_min_left_minus=149 max_min_left_plus=147 max_min_right=147 max_min_right_minus=136 max_min_right_plus=147 max_pos_hash_score=596 max_right=294 max_right_minus=294 max_right_plus=293 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.27 new_junction_read_count=132 polymorphism_frequency=1.000e+00 pos_hash_score=79 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=298 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=127 JC 326 . NC_000913 1978503 1 NC_000913 1979452 1 0 alignment_overlap=0 coverage_minus=108 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__1978503__1__NC_000913__1979452__1__0____300__300__1__0 max_left=291 max_left_minus=291 max_left_plus=287 max_min_left=149 max_min_left_minus=149 max_min_left_plus=139 max_min_right=149 max_min_right_minus=149 max_min_right_plus=131 max_pos_hash_score=598 max_right=294 max_right_minus=293 max_right_plus=294 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.60 new_junction_read_count=166 polymorphism_frequency=1.000e+00 pos_hash_score=98 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=299 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=161 JC 327 . NC_000913 2170171 1 NC_000913 3817267 1 0 alignment_overlap=1 coverage_minus=71 coverage_plus=38 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__2170171__1__NC_000913__3817266__1__1____300__300__1__0 max_left=295 max_left_minus=286 max_left_plus=295 max_min_left=149 max_min_left_minus=149 max_min_left_plus=146 max_min_right=145 max_min_right_minus=145 max_min_right_plus=133 max_pos_hash_score=596 max_right=297 max_right_minus=297 max_right_plus=264 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.07 new_junction_read_count=111 polymorphism_frequency=1.000e+00 pos_hash_score=72 prediction=consensus read_count_offset=3 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=109 JC 328 . NC_000913 3096673 -1 NC_000913 3130146 1 0 alignment_overlap=1 coverage_minus=45 coverage_plus=65 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=298 key=NC_000913__3096674__-1__NC_000913__3130146__1__1____300__300__0__1 max_left=297 max_left_minus=296 max_left_plus=297 max_min_left=149 max_min_left_minus=127 max_min_left_plus=149 max_min_right=145 max_min_right_minus=145 max_min_right_plus=113 max_pos_hash_score=596 max_right=293 max_right_minus=293 max_right_plus=288 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.07 new_junction_read_count=111 polymorphism_frequency=1.000e+00 pos_hash_score=73 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=298 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=110 JC 329 . NC_000913 3270072 1 NC_000913 4137788 1 -25 alignment_overlap=-25 coverage_minus=4 coverage_plus=0 flanking_left=300 flanking_right=300 frequency=6.824e-02 junction_possible_overlap_registers=274 key=NC_000913__3270072__1__NC_000913__4137788__1__-25__CAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0 max_left=268 max_left_minus=268 max_left_plus=0 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=76 max_min_right_minus=76 max_min_right_plus=0 max_pos_hash_score=548 max_right=76 max_right_minus=76 max_right_plus=0 neg_log10_pos_hash_p_value=9.0 new_junction_coverage=0.05 new_junction_read_count=5 polymorphism_frequency=6.824e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.59 side_1_overlap=0 side_1_possible_overlap_registers=299 side_1_read_count=61 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.85 side_2_overlap=0 side_2_possible_overlap_registers=299 side_2_read_count=88 side_2_redundant=0 total_non_overlap_reads=4 unique_read_sequence=CAGATTGTTGAGTGCGCTTTATTCA JC 330 . NC_000913 3468761 -1 NC_000913 3469086 1 0 alignment_overlap=2 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.118e-02 junction_possible_overlap_registers=297 key=NC_000913__3468761__-1__NC_000913__3469084__1__2____300__300__0__0 max_left=259 max_left_minus=171 max_left_plus=259 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=118 max_min_right_minus=118 max_min_right_plus=118 max_pos_hash_score=594 max_right=118 max_right_minus=118 max_right_plus=118 neg_log10_pos_hash_p_value=10.1 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.118e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.84 side_1_overlap=2 side_1_possible_overlap_registers=299 side_1_read_count=87 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.97 side_2_overlap=0 side_2_possible_overlap_registers=297 side_2_read_count=100 side_2_redundant=0 total_non_overlap_reads=3 JC 331 . NC_000913 3469013 -1 NC_000913 3469317 1 0 alignment_overlap=8 coverage_minus=4 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.575e-02 junction_possible_overlap_registers=291 key=NC_000913__3469013__-1__NC_000913__3469309__1__8____300__300__0__0 max_left=123 max_left_minus=123 max_left_plus=81 max_min_left=123 max_min_left_minus=123 max_min_left_plus=81 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=582 max_right=271 max_right_minus=271 max_right_plus=223 neg_log10_pos_hash_p_value=8.3 new_junction_coverage=0.06 new_junction_read_count=6 polymorphism_frequency=5.575e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.99 side_1_overlap=8 side_1_possible_overlap_registers=299 side_1_read_count=103 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.02 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=103 side_2_redundant=0 total_non_overlap_reads=6 JC 332 . NC_000913 3652036 1 NC_000913 3889127 -1 0 alignment_overlap=0 coverage_minus=46 coverage_plus=66 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__3652036__1__NC_000913__3889127__-1__0____300__300__1__0 max_left=294 max_left_minus=286 max_left_plus=294 max_min_left=145 max_min_left_minus=144 max_min_left_plus=145 max_min_right=135 max_min_right_minus=135 max_min_right_plus=131 max_pos_hash_score=598 max_right=298 max_right_minus=298 max_right_plus=296 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.12 new_junction_read_count=116 polymorphism_frequency=1.000e+00 pos_hash_score=75 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=112 JC 333 . NC_000913 3653230 -1 NC_000913 3889124 1 0 alignment_overlap=0 coverage_minus=60 coverage_plus=42 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=299 key=NC_000913__3653230__-1__NC_000913__3889124__1__0____300__300__1__0 max_left=295 max_left_minus=292 max_left_plus=295 max_min_left=146 max_min_left_minus=146 max_min_left_plus=119 max_min_right=150 max_min_right_minus=144 max_min_right_plus=150 max_pos_hash_score=598 max_right=296 max_right_minus=296 max_right_plus=294 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.99 new_junction_read_count=103 polymorphism_frequency=1.000e+00 pos_hash_score=73 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=102 JC 334 . NC_000913 3815858 -1 NC_000913 3815941 1 0 alignment_overlap=10 coverage_minus=48 coverage_plus=60 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=289 key=NC_000913__3815858__-1__NC_000913__3815931__1__10____300__300__0__0 max_left=289 max_left_minus=289 max_left_plus=288 max_min_left=133 max_min_left_minus=127 max_min_left_plus=133 max_min_right=137 max_min_right_minus=137 max_min_right_plus=126 max_pos_hash_score=578 max_right=289 max_right_minus=288 max_right_plus=289 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.08 new_junction_read_count=108 polymorphism_frequency=1.000e+00 pos_hash_score=69 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=10 side_1_possible_overlap_registers=299 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=108 JC 335 . NC_000913 4542682 1 NC_000913 4542996 1 0 alignment_overlap=9 coverage_minus=3 coverage_plus=10 flanking_left=300 flanking_right=300 frequency=8.944e-02 junction_possible_overlap_registers=290 key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0 max_left=280 max_left_minus=210 max_left_plus=280 max_min_left=141 max_min_left_minus=141 max_min_left_plus=114 max_min_right=81 max_min_right_minus=81 max_min_right_plus=64 max_pos_hash_score=580 max_right=242 max_right_minus=165 max_right_plus=242 neg_log10_pos_hash_p_value=6.0 new_junction_coverage=0.13 new_junction_read_count=13 polymorphism_frequency=8.944e-02 pos_hash_score=12 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.38 side_1_overlap=9 side_1_possible_overlap_registers=299 side_1_read_count=143 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.25 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=126 side_2_redundant=0 total_non_overlap_reads=13 JC 336 . NC_000913 4542690 -1 NC_000913 4542986 -1 0 alignment_overlap=9 coverage_minus=11 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=9.920e-02 junction_possible_overlap_registers=290 key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0 max_left=235 max_left_minus=235 max_left_plus=134 max_min_left=141 max_min_left_minus=141 max_min_left_plus=134 max_min_right=129 max_min_right_minus=129 max_min_right_plus=0 max_pos_hash_score=580 max_right=290 max_right_minus=290 max_right_plus=256 neg_log10_pos_hash_p_value=5.1 new_junction_coverage=0.15 new_junction_read_count=15 polymorphism_frequency=9.920e-02 pos_hash_score=15 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.46 side_1_overlap=9 side_1_possible_overlap_registers=299 side_1_read_count=152 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.24 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=125 side_2_redundant=0 total_non_overlap_reads=15 JC 337 . NC_000913 4606166 -1 NC_000913 4606403 1 0 alignment_overlap=89 coverage_minus=5 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.238e-01 junction_possible_overlap_registers=210 key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0 max_left=209 max_left_minus=209 max_left_plus=153 max_min_left=96 max_min_left_minus=75 max_min_left_plus=96 max_min_right=95 max_min_right_minus=47 max_min_right_plus=95 max_pos_hash_score=420 max_right=184 max_right_minus=136 max_right_plus=184 neg_log10_pos_hash_p_value=5.2 new_junction_coverage=0.12 new_junction_read_count=9 polymorphism_frequency=1.238e-01 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.92 side_1_overlap=89 side_1_possible_overlap_registers=299 side_1_read_count=96 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.82 side_2_overlap=0 side_2_possible_overlap_registers=210 side_2_read_count=60 side_2_redundant=0 total_non_overlap_reads=9 UN 338 . 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