#=GENOME_DIFF	1.0
#=CREATED	18:25:19 03 Jun 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250516nextseq_run_rmdup/IH112_rmdup_R1R2_ -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH112_rmdup_R1.fastq.gz /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH112_rmdup_R2.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH112_rmdup_R1.fastq.gz
#=READSEQ	/ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH112_rmdup_R2.fastq.gz
#=CONVERTED-BASES	483624000
#=CONVERTED-READS	1612080
#=INPUT-BASES	483716700
#=INPUT-READS	1612389
#=MAPPED-BASES	451649094
#=MAPPED-READS	1507896
SUB	1	82,83	NC_000913	61440	2	AA
SNP	2	84	NC_000913	159169	A
SNP	3	87	NC_000913	202464	A
DEL	4	323,332	NC_000913	257908	776
SNP	5	88	NC_000913	284535	G
SUB	6	89,90	NC_000913	364753	2	CC
SNP	7	91	NC_000913	403038	T
SUB	8	92,93	NC_000913	404238	2	TT
SNP	9	94	NC_000913	456803	T
MOB	10	337,338	NC_000913	485359	IS2	-1	5
SNP	11	118	NC_000913	566597	C
MOB	12	341,343	NC_000913	577400	IS3	-1	3
SNP	13	171	NC_000913	581322	T
SNP	14	173	NC_000913	581337	A
MOB	15	344,345	NC_000913	607765	IS150	1	3
SNP	16	220	NC_000913	617061	T
MOB	17	335,347	NC_000913	637142	IS3	-1	3
DEL	18	324,333	NC_000913	674957	12894	mediated=IS5
MOB	19	340,342	NC_000913	691512	IS3	-1	3
SNP	20	222	NC_000913	706759	A
SNP	21	223	NC_000913	708774	A
SNP	22	231	NC_000913	881614	T
SNP	23	234	NC_000913	997536	C
SNP	24	237	NC_000913	1023187	T
SNP	25	238	NC_000913	1169836	G
SNP	26	239	NC_000913	1189980	G
SNP	27	240	NC_000913	1196220	T
SNP	28	241	NC_000913	1196232	T
SNP	29	242	NC_000913	1196245	C
SNP	30	243	NC_000913	1196247	G
SNP	31	244	NC_000913	1196277	T
SNP	32	245	NC_000913	1196280	C
SNP	33	246	NC_000913	1196283	G
MOB	34	357,359	NC_000913	1221218	IS3	1	3
DEL	35	326,361	NC_000913	1299499	1199
SNP	36	252	NC_000913	1301992	T
SNP	37	253	NC_000913	1306736	G
SNP	38	254	NC_000913	1337394	G
SNP	39	255	NC_000913	1358859	C
SNP	40	256	NC_000913	1419679	C
SNP	41	257	NC_000913	1456421	A
SNP	42	262	NC_000913	1582030	C
SNP	43	263	NC_000913	1643679	T
SNP	44	264	NC_000913	1652331	C
SNP	45	265	NC_000913	1668027	A
SNP	46	267	NC_000913	1951320	A
SNP	47	268	NC_000913	1951332	C
SNP	48	269	NC_000913	1951335	T
SNP	49	270	NC_000913	1951338	T
SNP	50	275	NC_000913	1986220	G
SNP	51	276	NC_000913	2040433	A
SNP	52	277	NC_000913	2043522	A
SNP	53	278	NC_000913	2105739	A
DEL	54	279,280	NC_000913	2173363	2
SNP	55	282	NC_000913	2316887	A
SNP	56	283	NC_000913	2316895	A
SNP	57	284	NC_000913	2406410	T
SNP	58	287	NC_000913	2867332	A
SNP	59	288	NC_000913	2867455	A
SNP	60	292	NC_000913	3060221	A
SNP	61	293	NC_000913	3060380	T
DEL	62	328,366	NC_000913	3096674	33472	mediated=IS5
SNP	63	294	NC_000913	3184065	T
SNP	64	295	NC_000913	3388041	G
INS	65	297	NC_000913	3560455	G
SNP	66	299	NC_000913	3603627	T
SNP	67	300	NC_000913	3707947	A
DEL	68	330,372	NC_000913	3815859	82
MOB	69	334,358	NC_000913	3817266	IS3	-1	4	ins_end=TC
SNP	70	302	NC_000913	3837039	T
SNP	71	304	NC_000913	3844617	T
MOB	72	370,371	NC_000913	3889124	IS5	-1	4
SNP	73	307	NC_000913	4183829	C
SNP	74	308	NC_000913	4223638	C
SNP	75	309	NC_000913	4248791	A
SNP	76	310	NC_000913	4283161	T
INS	77	313,314	NC_000913	4296381	GC
SNP	78	317	NC_000913	4440855	A
SNP	79	318	NC_000913	4441042	T
SNP	80	320	NC_000913	4510238	G
SNP	81	322	NC_000913	4640877	T
RA	82	.	NC_000913	61440	0	G	A	consensus_score=315.6	frequency=1	major_base=A	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	83	.	NC_000913	61441	0	G	A	bias_e_value=3910860	bias_p_value=0.842557	consensus_score=308.1	fisher_strand_p_value=0.494253	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/44	major_frequency=9.885e-01	minor_base=C	minor_cov=1/0	new_cov=42/44	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	84	.	NC_000913	159169	0	T	A	consensus_score=329.6	frequency=1	major_base=A	major_cov=58/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/35
RA	85	.	NC_000913	161549	0	A	C	bias_e_value=0.0578222	bias_p_value=1.24573e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.5	fisher_strand_p_value=5.58476e-10	frequency=3.148e-01	ks_quality_p_value=1	major_base=A	major_cov=5/32	major_frequency=6.852e-01	minor_base=C	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=3.148e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=5/32	total_cov=22/32
RA	86	.	NC_000913	161559	0	G	A	bias_e_value=0.0829589	bias_p_value=1.78727e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.4	fisher_strand_p_value=8.15072e-10	frequency=3.208e-01	ks_quality_p_value=1	major_base=G	major_cov=5/31	major_frequency=6.792e-01	minor_base=A	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=3.208e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=5/31	total_cov=22/32
RA	87	.	NC_000913	202464	0	C	A	bias_e_value=3550360	bias_p_value=0.764891	consensus_score=401.3	fisher_strand_p_value=0.39823	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/68	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=44/68	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/68
RA	88	.	NC_000913	284535	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=150.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=17/25	major_frequency=9.767e-01	minor_base=A	minor_cov=0/1	new_cov=17/25	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	89	.	NC_000913	364753	0	T	C	consensus_score=200.0	frequency=1	major_base=C	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	90	.	NC_000913	364754	0	T	C	consensus_score=197.6	frequency=1	major_base=C	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	91	.	NC_000913	403038	0	C	T	consensus_score=281.3	frequency=1	major_base=T	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	92	.	NC_000913	404238	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=229.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/30	major_frequency=9.844e-01	minor_base=C	minor_cov=1/0	new_cov=33/30	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/30
RA	93	.	NC_000913	404239	0	C	T	consensus_score=236.0	frequency=1	major_base=T	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	94	.	NC_000913	456803	0	A	T	consensus_score=334.6	frequency=1	major_base=T	major_cov=38/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/63
RA	95	.	NC_000913	566396	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.9	fisher_strand_p_value=1	frequency=4.365e-01	ks_quality_p_value=1	major_base=T	major_cov=34/37	major_frequency=5.635e-01	minor_base=A	minor_cov=27/28	new_cov=27/28	polymorphism_frequency=4.365e-01	polymorphism_score=218.7	prediction=polymorphism	ref_cov=34/37	total_cov=61/65
RA	96	.	NC_000913	566414	0	A	G	bias_e_value=2324070	bias_p_value=0.500698	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.9	fisher_strand_p_value=0.517379	frequency=5.325e-01	ks_quality_p_value=0.361628	major_base=G	major_cov=48/34	major_frequency=5.325e-01	minor_base=A	minor_cov=38/34	new_cov=48/34	polymorphism_frequency=5.325e-01	polymorphism_score=232.8	prediction=polymorphism	ref_cov=38/34	total_cov=86/68
RA	97	.	NC_000913	566435	0	G	A	bias_e_value=4170080	bias_p_value=0.898405	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.5	fisher_strand_p_value=0.770045	frequency=5.789e-01	ks_quality_p_value=0.759118	major_base=A	major_cov=55/55	major_frequency=5.789e-01	minor_base=G	minor_cov=42/38	new_cov=55/55	polymorphism_frequency=5.789e-01	polymorphism_score=249.8	prediction=polymorphism	ref_cov=42/38	total_cov=97/93
RA	98	.	NC_000913	566444	0	T	C	bias_e_value=4144860	bias_p_value=0.892971	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.2	fisher_strand_p_value=0.574592	frequency=5.837e-01	ks_quality_p_value=1	major_base=C	major_cov=56/66	major_frequency=5.837e-01	minor_base=T	minor_cov=44/43	new_cov=56/66	polymorphism_frequency=5.837e-01	polymorphism_score=262.2	prediction=polymorphism	ref_cov=44/43	total_cov=100/109
RA	99	.	NC_000913	566451	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.5	fisher_strand_p_value=1	frequency=6.180e-01	ks_quality_p_value=1	major_base=C	major_cov=75/69	major_frequency=6.180e-01	minor_base=T	minor_cov=47/42	new_cov=75/69	polymorphism_frequency=6.180e-01	polymorphism_score=267.2	prediction=polymorphism	ref_cov=47/42	total_cov=122/111
RA	100	.	NC_000913	566463	0	T	C	bias_e_value=4202570	bias_p_value=0.905403	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.7	fisher_strand_p_value=0.597869	frequency=6.426e-01	ks_quality_p_value=1	major_base=C	major_cov=82/78	major_frequency=6.426e-01	minor_base=T	minor_cov=49/40	new_cov=82/78	polymorphism_frequency=6.426e-01	polymorphism_score=268.4	prediction=polymorphism	ref_cov=49/40	total_cov=131/119
RA	101	.	NC_000913	566468	0	C	T	bias_e_value=4246720	bias_p_value=0.914915	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.1	fisher_strand_p_value=0.693822	frequency=6.537e-01	ks_quality_p_value=0.889201	major_base=T	major_cov=87/81	major_frequency=6.537e-01	minor_base=C	minor_cov=49/40	new_cov=87/81	polymorphism_frequency=6.537e-01	polymorphism_score=266.6	prediction=polymorphism	ref_cov=49/40	total_cov=136/122
RA	102	.	NC_000913	566492	0	G	T	bias_e_value=3711540	bias_p_value=0.799616	consensus_reject=FREQUENCY_CUTOFF	consensus_score=461.6	fisher_strand_p_value=0.447685	frequency=7.157e-01	ks_quality_p_value=0.978451	major_base=T	major_cov=112/107	major_frequency=7.157e-01	minor_base=G	minor_cov=49/38	new_cov=112/107	polymorphism_frequency=7.157e-01	polymorphism_score=261.6	prediction=polymorphism	ref_cov=49/38	total_cov=161/145
RA	103	.	NC_000913	566493	0	G	A	bias_e_value=3203660	bias_p_value=0.690198	consensus_reject=FREQUENCY_CUTOFF	consensus_score=518.4	fisher_strand_p_value=0.374901	frequency=7.180e-01	ks_quality_p_value=0.866706	major_base=A	major_cov=112/107	major_frequency=7.180e-01	minor_base=G	minor_cov=49/37	new_cov=112/107	polymorphism_frequency=7.180e-01	polymorphism_score=250.1	prediction=polymorphism	ref_cov=49/37	total_cov=161/145
RA	104	.	NC_000913	566498	0	C	T	bias_e_value=4006750	bias_p_value=0.863216	consensus_reject=FREQUENCY_CUTOFF	consensus_score=522.1	fisher_strand_p_value=0.524888	frequency=7.171e-01	ks_quality_p_value=1	major_base=T	major_cov=112/106	major_frequency=7.171e-01	minor_base=C	minor_cov=48/38	new_cov=112/106	polymorphism_frequency=7.171e-01	polymorphism_score=234.4	prediction=polymorphism	ref_cov=48/38	total_cov=160/145
RA	105	.	NC_000913	566510	0	G	C	bias_e_value=4227310	bias_p_value=0.910734	consensus_reject=FREQUENCY_CUTOFF	consensus_score=548.5	fisher_strand_p_value=0.61487	frequency=7.110e-01	ks_quality_p_value=0.9895	major_base=C	major_cov=112/107	major_frequency=7.110e-01	minor_base=G	minor_cov=49/40	new_cov=112/107	polymorphism_frequency=7.110e-01	polymorphism_score=283.3	prediction=polymorphism	ref_cov=49/40	total_cov=161/147
RA	106	.	NC_000913	566513	0	C	T	bias_e_value=4416200	bias_p_value=0.951429	consensus_reject=FREQUENCY_CUTOFF	consensus_score=522.6	fisher_strand_p_value=0.704975	frequency=7.134e-01	ks_quality_p_value=1	major_base=T	major_cov=113/106	major_frequency=7.134e-01	minor_base=C	minor_cov=48/40	new_cov=113/106	polymorphism_frequency=7.134e-01	polymorphism_score=248.6	prediction=polymorphism	ref_cov=48/40	total_cov=161/147
RA	107	.	NC_000913	566519	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=507.4	fisher_strand_p_value=1	frequency=7.252e-01	ks_quality_p_value=1	major_base=C	major_cov=112/107	major_frequency=7.252e-01	minor_base=T	minor_cov=42/41	new_cov=112/107	polymorphism_frequency=7.252e-01	polymorphism_score=240.8	prediction=polymorphism	ref_cov=42/41	total_cov=154/148
RA	108	.	NC_000913	566522	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=467.6	fisher_strand_p_value=1	frequency=7.252e-01	ks_quality_p_value=1	major_base=A	major_cov=112/107	major_frequency=7.252e-01	minor_base=C	minor_cov=42/41	new_cov=112/107	polymorphism_frequency=7.252e-01	polymorphism_score=235.5	prediction=polymorphism	ref_cov=42/41	total_cov=154/148
RA	109	.	NC_000913	566528	0	A	G	bias_e_value=4542300	bias_p_value=0.978595	consensus_reject=FREQUENCY_CUTOFF	consensus_score=465.8	fisher_strand_p_value=0.800361	frequency=7.148e-01	ks_quality_p_value=1	major_base=G	major_cov=112/106	major_frequency=7.148e-01	minor_base=A	minor_cov=43/44	new_cov=112/106	polymorphism_frequency=7.148e-01	polymorphism_score=254.3	prediction=polymorphism	ref_cov=43/44	total_cov=155/150
RA	110	.	NC_000913	566530	1	.	T	bias_e_value=4525250	bias_p_value=0.974922	consensus_reject=FREQUENCY_CUTOFF	consensus_score=807.2	fisher_strand_p_value=0.795034	frequency=7.291e-01	ks_quality_p_value=0.986841	major_base=T	major_cov=111/107	major_frequency=7.291e-01	minor_base=.	minor_cov=43/38	new_cov=111/107	polymorphism_frequency=7.291e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=43/38	total_cov=154/145
RA	111	.	NC_000913	566532	0	A	T	bias_e_value=4323770	bias_p_value=0.931515	consensus_reject=FREQUENCY_CUTOFF	consensus_score=635.7	fisher_strand_p_value=1	frequency=7.267e-01	ks_quality_p_value=0.653519	major_base=T	major_cov=112/106	major_frequency=7.267e-01	minor_base=A	minor_cov=42/40	new_cov=112/106	polymorphism_frequency=7.267e-01	polymorphism_score=310.4	prediction=polymorphism	ref_cov=42/40	total_cov=154/147
RA	112	.	NC_000913	566535	0	T	.	bias_e_value=4537380	bias_p_value=0.977535	consensus_reject=FREQUENCY_CUTOFF	consensus_score=682.3	fisher_strand_p_value=0.79566	frequency=7.267e-01	ks_quality_p_value=1	major_base=.	major_cov=112/106	major_frequency=7.267e-01	minor_base=T	minor_cov=44/38	new_cov=112/106	polymorphism_frequency=7.267e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=44/38	total_cov=156/145
RA	113	.	NC_000913	566536	0	G	A	bias_e_value=4641640	bias_p_value=0.999997	consensus_reject=FREQUENCY_CUTOFF	consensus_score=543.9	fisher_strand_p_value=1	frequency=7.276e-01	ks_quality_p_value=0.997515	major_base=A	major_cov=113/106	major_frequency=7.276e-01	minor_base=G	minor_cov=43/39	new_cov=113/106	polymorphism_frequency=7.276e-01	polymorphism_score=229.7	prediction=polymorphism	ref_cov=43/39	total_cov=156/145
RA	114	.	NC_000913	566543	0	A	T	bias_e_value=4313980	bias_p_value=0.929407	consensus_reject=FREQUENCY_CUTOFF	consensus_score=711.1	fisher_strand_p_value=0.702686	frequency=7.375e-01	ks_quality_p_value=0.923038	major_base=T	major_cov=125/111	major_frequency=7.375e-01	minor_base=A	minor_cov=47/37	new_cov=125/111	polymorphism_frequency=7.375e-01	polymorphism_score=315.2	prediction=polymorphism	ref_cov=47/37	total_cov=172/148
RA	115	.	NC_000913	566547	0	C	A	bias_e_value=3957030	bias_p_value=0.852504	consensus_reject=FREQUENCY_CUTOFF	consensus_score=512.7	fisher_strand_p_value=0.526393	frequency=7.430e-01	ks_quality_p_value=0.966318	major_base=A	major_cov=126/114	major_frequency=7.430e-01	minor_base=C	minor_cov=47/36	new_cov=126/114	polymorphism_frequency=7.430e-01	polymorphism_score=246.9	prediction=polymorphism	ref_cov=47/36	total_cov=173/150
RA	116	.	NC_000913	566565	0	A	G	bias_e_value=3122570	bias_p_value=0.672728	consensus_reject=FREQUENCY_CUTOFF	consensus_score=831.6	fisher_strand_p_value=0.309711	frequency=7.953e-01	ks_quality_p_value=1	major_base=G	major_cov=149/154	major_frequency=7.953e-01	minor_base=A	minor_cov=44/34	new_cov=149/154	polymorphism_frequency=7.953e-01	polymorphism_score=206.1	prediction=polymorphism	ref_cov=44/34	total_cov=193/188
RA	117	.	NC_000913	566570	0	A	C	bias_e_value=3578570	bias_p_value=0.77097	consensus_reject=FREQUENCY_CUTOFF	consensus_score=947.6	fisher_strand_p_value=0.454016	frequency=7.943e-01	ks_quality_p_value=0.891804	major_base=C	major_cov=151/158	major_frequency=7.943e-01	minor_base=A	minor_cov=43/37	new_cov=151/158	polymorphism_frequency=7.943e-01	polymorphism_score=202.7	prediction=polymorphism	ref_cov=43/37	total_cov=194/195
RA	118	.	NC_000913	566597	0	T	C	bias_e_value=3495340	bias_p_value=0.753038	consensus_score=986.8	fisher_strand_p_value=0.389483	frequency=1	ks_quality_p_value=0.989972	major_base=C	major_cov=167/175	major_frequency=8.085e-01	minor_base=T	minor_cov=44/37	new_cov=167/175	polymorphism_frequency=8.085e-01	polymorphism_score=227.3	prediction=consensus	ref_cov=44/37	total_cov=211/212
RA	119	.	NC_000913	566651	0	T	C	bias_e_value=2769870	bias_p_value=0.596741	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1062.6	fisher_strand_p_value=0.250121	frequency=7.961e-01	ks_quality_p_value=1	major_base=C	major_cov=180/191	major_frequency=7.961e-01	minor_base=T	minor_cov=53/42	new_cov=180/191	polymorphism_frequency=7.961e-01	polymorphism_score=261.3	prediction=polymorphism	ref_cov=53/42	total_cov=233/233
RA	120	.	NC_000913	566728	0	G	T	bias_e_value=4431550	bias_p_value=0.954735	consensus_reject=FREQUENCY_CUTOFF	consensus_score=642.3	fisher_strand_p_value=0.714618	frequency=7.493e-01	ks_quality_p_value=1	major_base=T	major_cov=132/134	major_frequency=7.493e-01	minor_base=G	minor_cov=42/47	new_cov=132/134	polymorphism_frequency=7.493e-01	polymorphism_score=275.2	prediction=polymorphism	ref_cov=42/47	total_cov=175/181
RA	121	.	NC_000913	566740	0	A	G	bias_e_value=4032200	bias_p_value=0.8687	consensus_reject=FREQUENCY_CUTOFF	consensus_score=533.7	fisher_strand_p_value=0.533506	frequency=7.219e-01	ks_quality_p_value=1	major_base=G	major_cov=112/119	major_frequency=7.219e-01	minor_base=A	minor_cov=47/42	new_cov=112/119	polymorphism_frequency=7.219e-01	polymorphism_score=262.1	prediction=polymorphism	ref_cov=47/42	total_cov=159/161
RA	122	.	NC_000913	566742	0	A	C	bias_e_value=4031590	bias_p_value=0.868567	consensus_reject=FREQUENCY_CUTOFF	consensus_score=607.7	fisher_strand_p_value=0.533506	frequency=7.219e-01	ks_quality_p_value=0.999606	major_base=C	major_cov=112/119	major_frequency=7.219e-01	minor_base=A	minor_cov=47/42	new_cov=112/119	polymorphism_frequency=7.219e-01	polymorphism_score=239.1	prediction=polymorphism	ref_cov=47/42	total_cov=159/161
RA	123	.	NC_000913	566756	0	G	C	bias_e_value=4550750	bias_p_value=0.980417	consensus_reject=FREQUENCY_CUTOFF	consensus_score=557.9	fisher_strand_p_value=0.897351	frequency=7.233e-01	ks_quality_p_value=0.901249	major_base=C	major_cov=104/113	major_frequency=7.233e-01	minor_base=G	minor_cov=41/42	new_cov=104/113	polymorphism_frequency=7.233e-01	polymorphism_score=279.0	prediction=polymorphism	ref_cov=41/42	total_cov=145/155
RA	124	.	NC_000913	566770	0	C	A	bias_e_value=4536800	bias_p_value=0.97741	consensus_reject=FREQUENCY_CUTOFF	consensus_score=345.6	fisher_strand_p_value=0.795116	frequency=6.929e-01	ks_quality_p_value=1	major_base=A	major_cov=88/106	major_frequency=6.929e-01	minor_base=C	minor_cov=41/45	new_cov=88/106	polymorphism_frequency=6.929e-01	polymorphism_score=277.6	prediction=polymorphism	ref_cov=41/45	total_cov=130/151
RA	125	.	NC_000913	568052	0	T	C	bias_e_value=4368660	bias_p_value=0.941186	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.0	fisher_strand_p_value=0.896247	frequency=6.129e-01	ks_quality_p_value=0.755654	major_base=C	major_cov=72/80	major_frequency=6.129e-01	minor_base=T	minor_cov=47/49	new_cov=72/80	polymorphism_frequency=6.129e-01	polymorphism_score=286.3	prediction=polymorphism	ref_cov=47/49	total_cov=121/129
RA	126	.	NC_000913	568067	0	G	A	bias_e_value=4161820	bias_p_value=0.896625	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.2	fisher_strand_p_value=0.581256	frequency=5.714e-01	ks_quality_p_value=1	major_base=A	major_cov=53/71	major_frequency=5.714e-01	minor_base=G	minor_cov=44/49	new_cov=53/71	polymorphism_frequency=5.714e-01	polymorphism_score=275.0	prediction=polymorphism	ref_cov=44/49	total_cov=97/121
RA	127	.	NC_000913	568076	0	A	T	bias_e_value=3908280	bias_p_value=0.842001	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.6	fisher_strand_p_value=0.493465	frequency=5.185e-01	ks_quality_p_value=1	major_base=T	major_cov=46/66	major_frequency=5.185e-01	minor_base=A	minor_cov=48/56	new_cov=46/66	polymorphism_frequency=5.185e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=48/56	total_cov=94/122
RA	128	.	NC_000913	568077	0	A	C	bias_e_value=3908280	bias_p_value=0.842001	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.4	fisher_strand_p_value=0.493465	frequency=5.185e-01	ks_quality_p_value=1	major_base=C	major_cov=46/66	major_frequency=5.185e-01	minor_base=A	minor_cov=48/56	new_cov=46/66	polymorphism_frequency=5.185e-01	polymorphism_score=299.2	prediction=polymorphism	ref_cov=48/56	total_cov=94/122
RA	129	.	NC_000913	568079	0	C	T	bias_e_value=3248060	bias_p_value=0.699764	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.6	fisher_strand_p_value=0.33496	frequency=5.330e-01	ks_quality_p_value=0.995758	major_base=T	major_cov=46/67	major_frequency=5.330e-01	minor_base=C	minor_cov=47/52	new_cov=46/67	polymorphism_frequency=5.330e-01	polymorphism_score=310.4	prediction=polymorphism	ref_cov=47/52	total_cov=93/120
RA	130	.	NC_000913	568085	0	C	T	bias_e_value=3904240	bias_p_value=0.841133	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.7	fisher_strand_p_value=0.492238	frequency=5.280e-01	ks_quality_p_value=1	major_base=T	major_cov=46/67	major_frequency=5.280e-01	minor_base=C	minor_cov=46/55	new_cov=46/67	polymorphism_frequency=5.280e-01	polymorphism_score=298.0	prediction=polymorphism	ref_cov=46/55	total_cov=92/122
RA	131	.	NC_000913	568086	0	G	A	bias_e_value=3598080	bias_p_value=0.775172	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.8	fisher_strand_p_value=0.410702	frequency=5.327e-01	ks_quality_p_value=0.997246	major_base=A	major_cov=46/68	major_frequency=5.327e-01	minor_base=G	minor_cov=46/54	new_cov=46/68	polymorphism_frequency=5.327e-01	polymorphism_score=304.2	prediction=polymorphism	ref_cov=46/54	total_cov=92/122
RA	132	.	NC_000913	568088	0	T	C	bias_e_value=3891770	bias_p_value=0.838446	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.3	fisher_strand_p_value=0.488468	frequency=5.258e-01	ks_quality_p_value=1	major_base=C	major_cov=45/67	major_frequency=5.258e-01	minor_base=T	minor_cov=46/55	new_cov=45/67	polymorphism_frequency=5.258e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=46/55	total_cov=92/122
RA	133	.	NC_000913	568091	0	T	A	bias_e_value=4158350	bias_p_value=0.895876	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.5	fisher_strand_p_value=0.57988	frequency=5.258e-01	ks_quality_p_value=1	major_base=A	major_cov=46/66	major_frequency=5.258e-01	minor_base=T	minor_cov=46/55	new_cov=46/66	polymorphism_frequency=5.258e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=46/55	total_cov=92/122
RA	134	.	NC_000913	568124	0	C	T	bias_e_value=1452960	bias_p_value=0.313026	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.0	fisher_strand_p_value=0.266036	frequency=3.810e-01	ks_quality_p_value=0.348212	major_base=C	major_cov=48/56	major_frequency=6.190e-01	minor_base=T	minor_cov=36/28	new_cov=36/28	polymorphism_frequency=3.810e-01	polymorphism_score=205.2	prediction=polymorphism	ref_cov=48/56	total_cov=84/84
RA	135	.	NC_000913	568133	0	A	G	bias_e_value=2440900	bias_p_value=0.525869	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.4	fisher_strand_p_value=0.487791	frequency=3.245e-01	ks_quality_p_value=0.415103	major_base=A	major_cov=49/53	major_frequency=6.755e-01	minor_base=G	minor_cov=27/22	new_cov=27/22	polymorphism_frequency=3.245e-01	polymorphism_score=140.5	prediction=polymorphism	ref_cov=49/53	total_cov=76/76
RA	136	.	NC_000913	568140	0	T	C	bias_e_value=4209740	bias_p_value=0.906949	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.0	fisher_strand_p_value=0.600888	frequency=3.179e-01	ks_quality_p_value=1	major_base=T	major_cov=50/53	major_frequency=6.821e-01	minor_base=C	minor_cov=26/22	new_cov=26/22	polymorphism_frequency=3.179e-01	polymorphism_score=128.0	prediction=polymorphism	ref_cov=50/53	total_cov=77/76
RA	137	.	NC_000913	568152	0	G	A	bias_e_value=2303330	bias_p_value=0.49623	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.7	fisher_strand_p_value=0.233261	frequency=2.481e-01	ks_quality_p_value=0.790721	major_base=G	major_cov=48/52	major_frequency=7.519e-01	minor_base=A	minor_cov=20/13	new_cov=20/13	polymorphism_frequency=2.481e-01	polymorphism_score=87.2	prediction=polymorphism	ref_cov=48/52	total_cov=68/67
RA	138	.	NC_000913	581115	0	C	A	bias_e_value=316640	bias_p_value=0.068217	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.3	fisher_strand_p_value=0.0127975	frequency=5.449e-01	ks_quality_p_value=0.993577	major_base=A	major_cov=38/53	major_frequency=5.449e-01	minor_base=C	minor_cov=47/29	new_cov=38/53	polymorphism_frequency=5.449e-01	polymorphism_score=240.0	prediction=polymorphism	ref_cov=47/29	total_cov=85/83
RA	139	.	NC_000913	581121	0	A	C	bias_e_value=251201	bias_p_value=0.0541189	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.2	fisher_strand_p_value=0.013197	frequency=5.812e-01	ks_quality_p_value=0.726091	major_base=C	major_cov=49/62	major_frequency=5.812e-01	minor_base=A	minor_cov=50/30	new_cov=49/62	polymorphism_frequency=5.812e-01	polymorphism_score=210.0	prediction=polymorphism	ref_cov=50/30	total_cov=99/92
RA	140	.	NC_000913	581127	0	G	A	bias_e_value=436775	bias_p_value=0.094099	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.5	fisher_strand_p_value=0.0197058	frequency=6.020e-01	ks_quality_p_value=0.961573	major_base=A	major_cov=52/66	major_frequency=6.020e-01	minor_base=G	minor_cov=48/30	new_cov=52/66	polymorphism_frequency=6.020e-01	polymorphism_score=228.4	prediction=polymorphism	ref_cov=48/30	total_cov=100/96
RA	141	.	NC_000913	581130	0	G	A	bias_e_value=1054480	bias_p_value=0.227179	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.8	fisher_strand_p_value=0.0594231	frequency=5.960e-01	ks_quality_p_value=1	major_base=A	major_cov=52/66	major_frequency=5.960e-01	minor_base=G	minor_cov=47/33	new_cov=52/66	polymorphism_frequency=5.960e-01	polymorphism_score=227.5	prediction=polymorphism	ref_cov=47/33	total_cov=99/99
RA	142	.	NC_000913	581139	0	C	A	bias_e_value=1665170	bias_p_value=0.358745	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.2	fisher_strand_p_value=0.112777	frequency=6.100e-01	ks_quality_p_value=0.999395	major_base=A	major_cov=56/66	major_frequency=6.100e-01	minor_base=C	minor_cov=45/33	new_cov=56/66	polymorphism_frequency=6.100e-01	polymorphism_score=235.3	prediction=polymorphism	ref_cov=45/33	total_cov=101/99
RA	143	.	NC_000913	581141	0	G	A	bias_e_value=630908	bias_p_value=0.135923	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.3	fisher_strand_p_value=0.0302074	frequency=5.930e-01	ks_quality_p_value=1	major_base=A	major_cov=52/66	major_frequency=5.930e-01	minor_base=G	minor_cov=49/32	new_cov=52/66	polymorphism_frequency=5.930e-01	polymorphism_score=234.4	prediction=polymorphism	ref_cov=49/32	total_cov=101/98
RA	144	.	NC_000913	581145	0	C	T	bias_e_value=824666	bias_p_value=0.177667	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.3	fisher_strand_p_value=0.117284	frequency=5.721e-01	ks_quality_p_value=0.36491	major_base=T	major_cov=52/63	major_frequency=5.721e-01	minor_base=C	minor_cov=49/37	new_cov=52/63	polymorphism_frequency=5.721e-01	polymorphism_score=263.4	prediction=polymorphism	ref_cov=49/37	total_cov=101/100
RA	145	.	NC_000913	581154	0	A	G	bias_e_value=636116	bias_p_value=0.137045	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.7	fisher_strand_p_value=0.0314381	frequency=5.871e-01	ks_quality_p_value=0.971066	major_base=G	major_cov=52/66	major_frequency=5.871e-01	minor_base=A	minor_cov=50/33	new_cov=52/66	polymorphism_frequency=5.871e-01	polymorphism_score=257.9	prediction=polymorphism	ref_cov=50/33	total_cov=102/99
RA	146	.	NC_000913	581175	0	T	C	bias_e_value=856190	bias_p_value=0.184458	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.0	fisher_strand_p_value=0.0449706	frequency=5.871e-01	ks_quality_p_value=1	major_base=C	major_cov=52/66	major_frequency=5.871e-01	minor_base=T	minor_cov=49/34	new_cov=52/66	polymorphism_frequency=5.871e-01	polymorphism_score=262.6	prediction=polymorphism	ref_cov=49/34	total_cov=101/100
RA	147	.	NC_000913	581178	0	T	G	bias_e_value=1278380	bias_p_value=0.275415	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.2	fisher_strand_p_value=0.077387	frequency=6.082e-01	ks_quality_p_value=1	major_base=G	major_cov=52/66	major_frequency=6.082e-01	minor_base=T	minor_cov=44/32	new_cov=52/66	polymorphism_frequency=6.082e-01	polymorphism_score=230.5	prediction=polymorphism	ref_cov=44/32	total_cov=96/98
RA	148	.	NC_000913	581196	0	C	G	bias_e_value=821554	bias_p_value=0.176996	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.1	fisher_strand_p_value=0.0428396	frequency=6.225e-01	ks_quality_p_value=0.994074	major_base=G	major_cov=56/71	major_frequency=6.225e-01	minor_base=C	minor_cov=46/31	new_cov=56/71	polymorphism_frequency=6.225e-01	polymorphism_score=265.1	prediction=polymorphism	ref_cov=46/31	total_cov=102/102
RA	149	.	NC_000913	581199	0	A	C	bias_e_value=662693	bias_p_value=0.142771	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.4	fisher_strand_p_value=0.0607507	frequency=6.207e-01	ks_quality_p_value=0.52974	major_base=C	major_cov=56/70	major_frequency=6.207e-01	minor_base=A	minor_cov=45/32	new_cov=56/70	polymorphism_frequency=6.207e-01	polymorphism_score=196.7	prediction=polymorphism	ref_cov=45/32	total_cov=101/102
RA	150	.	NC_000913	581202	0	T	A	bias_e_value=825270	bias_p_value=0.177797	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.5	fisher_strand_p_value=0.0428396	frequency=6.207e-01	ks_quality_p_value=1	major_base=A	major_cov=56/70	major_frequency=6.207e-01	minor_base=T	minor_cov=46/31	new_cov=56/70	polymorphism_frequency=6.207e-01	polymorphism_score=303.4	prediction=polymorphism	ref_cov=46/31	total_cov=102/102
RA	151	.	NC_000913	581206	0	A	G	bias_e_value=1362880	bias_p_value=0.29362	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.8	fisher_strand_p_value=0.0846294	frequency=6.214e-01	ks_quality_p_value=1	major_base=G	major_cov=57/71	major_frequency=6.214e-01	minor_base=A	minor_cov=45/33	new_cov=57/71	polymorphism_frequency=6.214e-01	polymorphism_score=221.9	prediction=polymorphism	ref_cov=45/33	total_cov=102/104
RA	152	.	NC_000913	581208	0	T	A	bias_e_value=840396	bias_p_value=0.181055	consensus_reject=FREQUENCY_CUTOFF	consensus_score=268.5	fisher_strand_p_value=0.0438779	frequency=6.158e-01	ks_quality_p_value=1	major_base=A	major_cov=55/70	major_frequency=6.158e-01	minor_base=T	minor_cov=46/32	new_cov=55/70	polymorphism_frequency=6.158e-01	polymorphism_score=306.1	prediction=polymorphism	ref_cov=46/32	total_cov=101/103
RA	153	.	NC_000913	581214	0	T	C	bias_e_value=1127450	bias_p_value=0.242899	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.7	fisher_strand_p_value=0.0650841	frequency=6.135e-01	ks_quality_p_value=1	major_base=C	major_cov=56/71	major_frequency=6.135e-01	minor_base=T	minor_cov=46/34	new_cov=56/71	polymorphism_frequency=6.135e-01	polymorphism_score=238.0	prediction=polymorphism	ref_cov=46/34	total_cov=102/105
RA	154	.	NC_000913	581220	0	C	T	bias_e_value=1698710	bias_p_value=0.365971	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.8	fisher_strand_p_value=0.116041	frequency=6.135e-01	ks_quality_p_value=1	major_base=T	major_cov=56/71	major_frequency=6.135e-01	minor_base=C	minor_cov=45/35	new_cov=56/71	polymorphism_frequency=6.135e-01	polymorphism_score=223.5	prediction=polymorphism	ref_cov=45/35	total_cov=101/106
RA	155	.	NC_000913	581223	0	C	T	bias_e_value=1727440	bias_p_value=0.37216	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.4	fisher_strand_p_value=0.118931	frequency=6.058e-01	ks_quality_p_value=1	major_base=T	major_cov=56/70	major_frequency=6.058e-01	minor_base=C	minor_cov=46/36	new_cov=56/70	polymorphism_frequency=6.058e-01	polymorphism_score=249.1	prediction=polymorphism	ref_cov=46/36	total_cov=102/107
RA	156	.	NC_000913	581226	0	G	A	bias_e_value=2079300	bias_p_value=0.447966	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.2	fisher_strand_p_value=0.157151	frequency=6.029e-01	ks_quality_p_value=1	major_base=A	major_cov=56/70	major_frequency=6.029e-01	minor_base=G	minor_cov=46/37	new_cov=56/70	polymorphism_frequency=6.029e-01	polymorphism_score=241.3	prediction=polymorphism	ref_cov=46/37	total_cov=102/107
RA	157	.	NC_000913	581227	0	A	G	bias_e_value=2091210	bias_p_value=0.450531	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.1	fisher_strand_p_value=0.15854	frequency=5.990e-01	ks_quality_p_value=1	major_base=G	major_cov=56/68	major_frequency=5.990e-01	minor_base=A	minor_cov=46/37	new_cov=56/68	polymorphism_frequency=5.990e-01	polymorphism_score=244.9	prediction=polymorphism	ref_cov=46/37	total_cov=103/106
RA	158	.	NC_000913	581229	0	C	T	bias_e_value=1403720	bias_p_value=0.302419	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.0	fisher_strand_p_value=0.0882231	frequency=6.106e-01	ks_quality_p_value=1	major_base=T	major_cov=56/71	major_frequency=6.106e-01	minor_base=C	minor_cov=46/35	new_cov=56/71	polymorphism_frequency=6.106e-01	polymorphism_score=243.2	prediction=polymorphism	ref_cov=46/35	total_cov=102/106
RA	159	.	NC_000913	581232	0	C	T	bias_e_value=1702110	bias_p_value=0.366703	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.8	fisher_strand_p_value=0.116381	frequency=6.165e-01	ks_quality_p_value=1	major_base=T	major_cov=56/71	major_frequency=6.165e-01	minor_base=C	minor_cov=44/35	new_cov=56/71	polymorphism_frequency=6.165e-01	polymorphism_score=231.5	prediction=polymorphism	ref_cov=44/35	total_cov=102/106
RA	160	.	NC_000913	581241	0	G	T	bias_e_value=4199960	bias_p_value=0.904841	consensus_reject=FREQUENCY_CUTOFF	consensus_score=357.1	fisher_strand_p_value=0.598873	frequency=6.830e-01	ks_quality_p_value=0.996504	major_base=T	major_cov=97/84	major_frequency=6.830e-01	minor_base=G	minor_cov=48/36	new_cov=97/84	polymorphism_frequency=6.830e-01	polymorphism_score=254.0	prediction=polymorphism	ref_cov=48/36	total_cov=146/120
RA	161	.	NC_000913	581250	0	T	C	bias_e_value=4525510	bias_p_value=0.974978	consensus_reject=FREQUENCY_CUTOFF	consensus_score=512.3	fisher_strand_p_value=0.784802	frequency=7.355e-01	ks_quality_p_value=1	major_base=C	major_cov=106/97	major_frequency=7.355e-01	minor_base=T	minor_cov=40/33	new_cov=106/97	polymorphism_frequency=7.355e-01	polymorphism_score=210.2	prediction=polymorphism	ref_cov=40/33	total_cov=146/130
RA	162	.	NC_000913	581253	0	T	C	bias_e_value=73589.3	bias_p_value=0.0158541	consensus_reject=FREQUENCY_CUTOFF	consensus_score=402.8	fisher_strand_p_value=0.784293	frequency=7.326e-01	ks_quality_p_value=0.00284506	major_base=C	major_cov=104/96	major_frequency=7.326e-01	minor_base=T	minor_cov=40/33	new_cov=104/96	polymorphism_frequency=7.326e-01	polymorphism_score=210.4	prediction=polymorphism	ref_cov=40/33	total_cov=146/129
RA	163	.	NC_000913	581259	0	A	G	bias_e_value=4386020	bias_p_value=0.944926	consensus_reject=FREQUENCY_CUTOFF	consensus_score=554.5	fisher_strand_p_value=0.687033	frequency=7.466e-01	ks_quality_p_value=1	major_base=G	major_cov=114/104	major_frequency=7.466e-01	minor_base=A	minor_cov=41/33	new_cov=114/104	polymorphism_frequency=7.466e-01	polymorphism_score=207.4	prediction=polymorphism	ref_cov=41/33	total_cov=155/137
RA	164	.	NC_000913	581275	0	G	A	bias_e_value=3727330	bias_p_value=0.803018	consensus_reject=FREQUENCY_CUTOFF	consensus_score=697.3	fisher_strand_p_value=0.443806	frequency=7.575e-01	ks_quality_p_value=0.996341	major_base=A	major_cov=123/130	major_frequency=7.575e-01	minor_base=G	minor_cov=44/37	new_cov=123/130	polymorphism_frequency=7.575e-01	polymorphism_score=223.3	prediction=polymorphism	ref_cov=44/37	total_cov=167/167
RA	165	.	NC_000913	581286	0	G	C	bias_e_value=622091	bias_p_value=0.134024	consensus_reject=FREQUENCY_CUTOFF	consensus_score=641.4	fisher_strand_p_value=0.523807	frequency=7.485e-01	ks_quality_p_value=0.0566354	major_base=C	major_cov=114/130	major_frequency=7.485e-01	minor_base=G	minor_cov=42/40	new_cov=114/130	polymorphism_frequency=7.485e-01	polymorphism_score=242.3	prediction=polymorphism	ref_cov=42/40	total_cov=165/172
RA	166	.	NC_000913	581289	0	A	G	bias_e_value=244216	bias_p_value=0.0526141	consensus_reject=FREQUENCY_CUTOFF	consensus_score=569.6	fisher_strand_p_value=1	frequency=7.477e-01	ks_quality_p_value=0.00925964	major_base=G	major_cov=123/126	major_frequency=7.477e-01	minor_base=A	minor_cov=42/42	new_cov=123/126	polymorphism_frequency=7.477e-01	polymorphism_score=247.4	prediction=polymorphism	ref_cov=42/42	total_cov=165/172
RA	167	.	NC_000913	581290	0	C	A	bias_e_value=4641610	bias_p_value=0.999991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=572.1	fisher_strand_p_value=1	frequency=7.530e-01	ks_quality_p_value=0.99579	major_base=A	major_cov=123/130	major_frequency=7.530e-01	minor_base=C	minor_cov=41/42	new_cov=123/130	polymorphism_frequency=7.530e-01	polymorphism_score=244.2	prediction=polymorphism	ref_cov=41/42	total_cov=164/172
RA	168	.	NC_000913	581291	0	G	A	bias_e_value=557763	bias_p_value=0.120165	consensus_reject=FREQUENCY_CUTOFF	consensus_score=590.4	fisher_strand_p_value=1	frequency=7.530e-01	ks_quality_p_value=0.0258012	major_base=A	major_cov=123/130	major_frequency=7.530e-01	minor_base=G	minor_cov=41/42	new_cov=123/130	polymorphism_frequency=7.530e-01	polymorphism_score=215.1	prediction=polymorphism	ref_cov=41/42	total_cov=164/173
RA	169	.	NC_000913	581295	0	T	C	bias_e_value=4639330	bias_p_value=0.9995	consensus_reject=FREQUENCY_CUTOFF	consensus_score=635.0	fisher_strand_p_value=1	frequency=7.493e-01	ks_quality_p_value=0.968538	major_base=C	major_cov=123/128	major_frequency=7.493e-01	minor_base=T	minor_cov=41/43	new_cov=123/128	polymorphism_frequency=7.493e-01	polymorphism_score=245.6	prediction=polymorphism	ref_cov=41/43	total_cov=164/171
RA	170	.	NC_000913	581301	0	C	T	bias_e_value=4608290	bias_p_value=0.992812	consensus_reject=FREQUENCY_CUTOFF	consensus_score=660.6	fisher_strand_p_value=1	frequency=7.530e-01	ks_quality_p_value=0.882518	major_base=T	major_cov=123/130	major_frequency=7.530e-01	minor_base=C	minor_cov=41/42	new_cov=123/130	polymorphism_frequency=7.530e-01	polymorphism_score=236.0	prediction=polymorphism	ref_cov=41/42	total_cov=164/172
RA	171	.	NC_000913	581322	0	C	T	bias_e_value=4619890	bias_p_value=0.995311	consensus_score=1022.2	fisher_strand_p_value=0.904739	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=179/166	major_frequency=8.005e-01	minor_base=C	minor_cov=44/42	new_cov=179/166	polymorphism_frequency=8.005e-01	polymorphism_score=228.9	prediction=consensus	ref_cov=44/42	total_cov=224/208
RA	172	.	NC_000913	581335	0	C	A	bias_e_value=4506990	bias_p_value=0.970988	consensus_reject=FREQUENCY_CUTOFF	consensus_score=917.3	fisher_strand_p_value=1	frequency=7.982e-01	ks_quality_p_value=0.768995	major_base=A	major_cov=188/172	major_frequency=7.982e-01	minor_base=C	minor_cov=47/44	new_cov=188/172	polymorphism_frequency=7.982e-01	polymorphism_score=268.8	prediction=polymorphism	ref_cov=47/44	total_cov=237/216
RA	173	.	NC_000913	581337	0	G	A	bias_e_value=4596070	bias_p_value=0.99018	consensus_score=1092.0	fisher_strand_p_value=0.906057	frequency=1	ks_quality_p_value=0.952669	major_base=A	major_cov=191/172	major_frequency=8.031e-01	minor_base=G	minor_cov=46/43	new_cov=191/172	polymorphism_frequency=8.031e-01	polymorphism_score=238.4	prediction=consensus	ref_cov=46/43	total_cov=237/215
RA	174	.	NC_000913	581380	0	C	G	bias_e_value=463794	bias_p_value=0.09992	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1009.7	fisher_strand_p_value=0.299095	frequency=7.867e-01	ks_quality_p_value=0.0683076	major_base=G	major_cov=199/155	major_frequency=7.867e-01	minor_base=C	minor_cov=48/48	new_cov=199/155	polymorphism_frequency=7.867e-01	polymorphism_score=302.9	prediction=polymorphism	ref_cov=48/48	total_cov=247/208
RA	175	.	NC_000913	581381	0	A	G	bias_e_value=3037120	bias_p_value=0.654319	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1000.0	fisher_strand_p_value=0.415964	frequency=7.930e-01	ks_quality_p_value=0.707601	major_base=G	major_cov=199/161	major_frequency=7.930e-01	minor_base=A	minor_cov=47/47	new_cov=199/161	polymorphism_frequency=7.930e-01	polymorphism_score=268.8	prediction=polymorphism	ref_cov=47/47	total_cov=246/208
RA	176	.	NC_000913	581388	0	G	A	bias_e_value=1974720	bias_p_value=0.425436	consensus_reject=FREQUENCY_CUTOFF	consensus_score=747.1	fisher_strand_p_value=0.145227	frequency=7.500e-01	ks_quality_p_value=1	major_base=A	major_cov=163/113	major_frequency=7.500e-01	minor_base=G	minor_cov=46/46	new_cov=163/113	polymorphism_frequency=7.500e-01	polymorphism_score=247.1	prediction=polymorphism	ref_cov=46/46	total_cov=209/159
RA	177	.	NC_000913	581392	0	T	C	bias_e_value=1673950	bias_p_value=0.360637	consensus_reject=FREQUENCY_CUTOFF	consensus_score=686.3	fisher_strand_p_value=0.114396	frequency=7.520e-01	ks_quality_p_value=0.992839	major_base=C	major_cov=163/113	major_frequency=7.520e-01	minor_base=T	minor_cov=45/46	new_cov=163/113	polymorphism_frequency=7.520e-01	polymorphism_score=264.5	prediction=polymorphism	ref_cov=45/46	total_cov=208/159
RA	178	.	NC_000913	581394	0	T	C	bias_e_value=760166	bias_p_value=0.163771	consensus_reject=FREQUENCY_CUTOFF	consensus_score=669.3	fisher_strand_p_value=0.0884604	frequency=7.548e-01	ks_quality_p_value=0.43478	major_base=C	major_cov=164/113	major_frequency=7.548e-01	minor_base=T	minor_cov=44/46	new_cov=164/113	polymorphism_frequency=7.548e-01	polymorphism_score=267.2	prediction=polymorphism	ref_cov=44/46	total_cov=208/159
RA	179	.	NC_000913	581397	0	T	C	bias_e_value=1067270	bias_p_value=0.229932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=676.9	fisher_strand_p_value=0.067747	frequency=7.534e-01	ks_quality_p_value=0.891572	major_base=C	major_cov=162/113	major_frequency=7.534e-01	minor_base=T	minor_cov=43/47	new_cov=162/113	polymorphism_frequency=7.534e-01	polymorphism_score=261.4	prediction=polymorphism	ref_cov=43/47	total_cov=205/160
RA	180	.	NC_000913	581398	0	C	G	bias_e_value=1128830	bias_p_value=0.243195	consensus_reject=FREQUENCY_CUTOFF	consensus_score=762.1	fisher_strand_p_value=0.067078	frequency=7.541e-01	ks_quality_p_value=0.971892	major_base=G	major_cov=163/113	major_frequency=7.541e-01	minor_base=C	minor_cov=43/47	new_cov=163/113	polymorphism_frequency=7.541e-01	polymorphism_score=290.4	prediction=polymorphism	ref_cov=43/47	total_cov=206/160
RA	181	.	NC_000913	581404	0	C	G	bias_e_value=771841	bias_p_value=0.166286	consensus_reject=FREQUENCY_CUTOFF	consensus_score=745.4	fisher_strand_p_value=0.0392353	frequency=7.479e-01	ks_quality_p_value=0.999998	major_base=G	major_cov=162/111	major_frequency=7.479e-01	minor_base=C	minor_cov=43/49	new_cov=162/111	polymorphism_frequency=7.479e-01	polymorphism_score=297.8	prediction=polymorphism	ref_cov=43/49	total_cov=206/162
RA	182	.	NC_000913	581407	0	G	T	bias_e_value=780998	bias_p_value=0.168259	consensus_reject=FREQUENCY_CUTOFF	consensus_score=659.0	fisher_strand_p_value=0.0398459	frequency=7.480e-01	ks_quality_p_value=0.999998	major_base=T	major_cov=163/113	major_frequency=7.480e-01	minor_base=G	minor_cov=43/50	new_cov=163/113	polymorphism_frequency=7.480e-01	polymorphism_score=270.5	prediction=polymorphism	ref_cov=43/50	total_cov=206/163
RA	183	.	NC_000913	581410	0	T	A	bias_e_value=809590	bias_p_value=0.174418	consensus_reject=FREQUENCY_CUTOFF	consensus_score=862.0	fisher_strand_p_value=0.052009	frequency=7.500e-01	ks_quality_p_value=0.803159	major_base=A	major_cov=163/113	major_frequency=7.500e-01	minor_base=T	minor_cov=43/49	new_cov=163/113	polymorphism_frequency=7.500e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=43/49	total_cov=206/163
RA	184	.	NC_000913	581412	0	G	T	bias_e_value=515446	bias_p_value=0.111048	consensus_reject=FREQUENCY_CUTOFF	consensus_score=633.5	fisher_strand_p_value=0.0275997	frequency=7.534e-01	ks_quality_p_value=0.845716	major_base=T	major_cov=163/112	major_frequency=7.534e-01	minor_base=G	minor_cov=41/49	new_cov=163/112	polymorphism_frequency=7.534e-01	polymorphism_score=267.4	prediction=polymorphism	ref_cov=41/49	total_cov=204/162
RA	185	.	NC_000913	581413	0	C	T	bias_e_value=478402	bias_p_value=0.103067	consensus_reject=FREQUENCY_CUTOFF	consensus_score=735.6	fisher_strand_p_value=0.0212435	frequency=7.520e-01	ks_quality_p_value=1	major_base=T	major_cov=163/113	major_frequency=7.520e-01	minor_base=C	minor_cov=41/50	new_cov=163/113	polymorphism_frequency=7.520e-01	polymorphism_score=258.1	prediction=polymorphism	ref_cov=41/50	total_cov=204/163
RA	186	.	NC_000913	581416	0	A	G	bias_e_value=173255	bias_p_value=0.0373262	consensus_reject=FREQUENCY_CUTOFF	consensus_score=687.0	fisher_strand_p_value=0.00656002	frequency=7.576e-01	ks_quality_p_value=0.933448	major_base=G	major_cov=163/112	major_frequency=7.576e-01	minor_base=A	minor_cov=37/51	new_cov=163/112	polymorphism_frequency=7.576e-01	polymorphism_score=251.5	prediction=polymorphism	ref_cov=37/51	total_cov=201/163
RA	187	.	NC_000913	581421	0	T	A	bias_e_value=1238270	bias_p_value=0.266774	consensus_reject=FREQUENCY_CUTOFF	consensus_score=836.0	fisher_strand_p_value=0.0741627	frequency=7.398e-01	ks_quality_p_value=0.998326	major_base=A	major_cov=160/113	major_frequency=7.398e-01	minor_base=T	minor_cov=46/50	new_cov=160/113	polymorphism_frequency=7.398e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=46/50	total_cov=207/163
RA	188	.	NC_000913	581423	0	A	C	bias_e_value=1216910	bias_p_value=0.262171	consensus_reject=FREQUENCY_CUTOFF	consensus_score=755.3	fisher_strand_p_value=0.0731629	frequency=7.412e-01	ks_quality_p_value=0.987916	major_base=C	major_cov=162/113	major_frequency=7.412e-01	minor_base=A	minor_cov=46/50	new_cov=162/113	polymorphism_frequency=7.412e-01	polymorphism_score=247.1	prediction=polymorphism	ref_cov=46/50	total_cov=208/163
RA	189	.	NC_000913	581425	0	G	A	bias_e_value=1043780	bias_p_value=0.224873	consensus_reject=FREQUENCY_CUTOFF	consensus_score=712.9	fisher_strand_p_value=0.0736469	frequency=7.439e-01	ks_quality_p_value=0.795802	major_base=A	major_cov=163/113	major_frequency=7.439e-01	minor_base=G	minor_cov=46/49	new_cov=163/113	polymorphism_frequency=7.439e-01	polymorphism_score=275.3	prediction=polymorphism	ref_cov=46/49	total_cov=209/162
RA	190	.	NC_000913	581428	0	G	T	bias_e_value=2261860	bias_p_value=0.487295	consensus_reject=FREQUENCY_CUTOFF	consensus_score=655.7	fisher_strand_p_value=0.179505	frequency=7.520e-01	ks_quality_p_value=0.998321	major_base=T	major_cov=163/113	major_frequency=7.520e-01	minor_base=G	minor_cov=46/45	new_cov=163/113	polymorphism_frequency=7.520e-01	polymorphism_score=271.0	prediction=polymorphism	ref_cov=46/45	total_cov=209/158
RA	191	.	NC_000913	581434	0	A	G	bias_e_value=1870810	bias_p_value=0.403049	consensus_reject=FREQUENCY_CUTOFF	consensus_score=634.1	fisher_strand_p_value=0.235022	frequency=7.373e-01	ks_quality_p_value=0.569567	major_base=G	major_cov=163/112	major_frequency=7.373e-01	minor_base=A	minor_cov=51/47	new_cov=163/112	polymorphism_frequency=7.373e-01	polymorphism_score=284.2	prediction=polymorphism	ref_cov=51/47	total_cov=214/159
RA	192	.	NC_000913	581437	0	G	A	bias_e_value=2985250	bias_p_value=0.643143	consensus_reject=FREQUENCY_CUTOFF	consensus_score=713.9	fisher_strand_p_value=0.285313	frequency=7.392e-01	ks_quality_p_value=1	major_base=A	major_cov=162/113	major_frequency=7.392e-01	minor_base=G	minor_cov=51/46	new_cov=162/113	polymorphism_frequency=7.392e-01	polymorphism_score=270.8	prediction=polymorphism	ref_cov=51/46	total_cov=214/159
RA	193	.	NC_000913	581440	0	C	G	bias_e_value=2269580	bias_p_value=0.488959	consensus_reject=FREQUENCY_CUTOFF	consensus_score=712.1	fisher_strand_p_value=0.469559	frequency=7.418e-01	ks_quality_p_value=0.383705	major_base=G	major_cov=162/111	major_frequency=7.418e-01	minor_base=C	minor_cov=52/43	new_cov=162/111	polymorphism_frequency=7.418e-01	polymorphism_score=311.4	prediction=polymorphism	ref_cov=52/43	total_cov=214/156
RA	194	.	NC_000913	581443	0	C	G	bias_e_value=3823030	bias_p_value=0.823636	consensus_reject=FREQUENCY_CUTOFF	consensus_score=765.2	fisher_strand_p_value=0.468382	frequency=7.459e-01	ks_quality_p_value=1	major_base=G	major_cov=163/113	major_frequency=7.459e-01	minor_base=C	minor_cov=51/43	new_cov=163/113	polymorphism_frequency=7.459e-01	polymorphism_score=288.2	prediction=polymorphism	ref_cov=51/43	total_cov=214/156
RA	195	.	NC_000913	581455	0	G	A	bias_e_value=3496830	bias_p_value=0.753359	consensus_reject=FREQUENCY_CUTOFF	consensus_score=722.3	fisher_strand_p_value=0.392247	frequency=7.514e-01	ks_quality_p_value=0.983857	major_base=A	major_cov=163/112	major_frequency=7.514e-01	minor_base=G	minor_cov=49/42	new_cov=163/112	polymorphism_frequency=7.514e-01	polymorphism_score=256.5	prediction=polymorphism	ref_cov=49/42	total_cov=212/154
RA	196	.	NC_000913	581458	0	T	C	bias_e_value=3814450	bias_p_value=0.821787	consensus_reject=FREQUENCY_CUTOFF	consensus_score=687.3	fisher_strand_p_value=0.465952	frequency=7.493e-01	ks_quality_p_value=1	major_base=C	major_cov=162/113	major_frequency=7.493e-01	minor_base=T	minor_cov=50/42	new_cov=162/113	polymorphism_frequency=7.493e-01	polymorphism_score=263.5	prediction=polymorphism	ref_cov=50/42	total_cov=212/155
RA	197	.	NC_000913	581460	0	C	A	bias_e_value=3656170	bias_p_value=0.787687	consensus_reject=FREQUENCY_CUTOFF	consensus_score=599.1	fisher_strand_p_value=0.468772	frequency=7.453e-01	ks_quality_p_value=0.904208	major_base=A	major_cov=162/113	major_frequency=7.453e-01	minor_base=C	minor_cov=51/43	new_cov=162/113	polymorphism_frequency=7.453e-01	polymorphism_score=289.5	prediction=polymorphism	ref_cov=51/43	total_cov=213/156
RA	198	.	NC_000913	581476	0	G	C	bias_e_value=4488200	bias_p_value=0.96694	consensus_reject=FREQUENCY_CUTOFF	consensus_score=673.4	fisher_strand_p_value=0.808509	frequency=7.409e-01	ks_quality_p_value=0.93275	major_base=C	major_cov=153/113	major_frequency=7.409e-01	minor_base=G	minor_cov=52/41	new_cov=153/113	polymorphism_frequency=7.409e-01	polymorphism_score=275.1	prediction=polymorphism	ref_cov=52/41	total_cov=211/156
RA	199	.	NC_000913	581482	0	A	G	bias_e_value=3087700	bias_p_value=0.665217	consensus_reject=FREQUENCY_CUTOFF	consensus_score=621.8	fisher_strand_p_value=0.467928	frequency=7.368e-01	ks_quality_p_value=0.648302	major_base=G	major_cov=158/108	major_frequency=7.368e-01	minor_base=A	minor_cov=52/43	new_cov=158/108	polymorphism_frequency=7.368e-01	polymorphism_score=279.4	prediction=polymorphism	ref_cov=52/43	total_cov=210/151
RA	200	.	NC_000913	581485	0	C	G	bias_e_value=3541790	bias_p_value=0.763046	consensus_reject=FREQUENCY_CUTOFF	consensus_score=705.6	fisher_strand_p_value=0.397011	frequency=7.389e-01	ks_quality_p_value=0.998039	major_base=G	major_cov=158/108	major_frequency=7.389e-01	minor_base=C	minor_cov=51/43	new_cov=158/108	polymorphism_frequency=7.389e-01	polymorphism_score=310.4	prediction=polymorphism	ref_cov=51/43	total_cov=210/151
RA	201	.	NC_000913	581488	0	A	C	bias_e_value=2167980	bias_p_value=0.46707	consensus_reject=FREQUENCY_CUTOFF	consensus_score=684.6	fisher_strand_p_value=0.328376	frequency=7.430e-01	ks_quality_p_value=0.510573	major_base=C	major_cov=158/108	major_frequency=7.430e-01	minor_base=A	minor_cov=49/43	new_cov=158/108	polymorphism_frequency=7.430e-01	polymorphism_score=233.9	prediction=polymorphism	ref_cov=49/43	total_cov=207/151
RA	202	.	NC_000913	581512	0	A	G	bias_e_value=3902230	bias_p_value=0.840699	consensus_reject=FREQUENCY_CUTOFF	consensus_score=512.5	fisher_strand_p_value=0.900201	frequency=7.205e-01	ks_quality_p_value=0.54613	major_base=G	major_cov=134/98	major_frequency=7.205e-01	minor_base=A	minor_cov=53/37	new_cov=134/98	polymorphism_frequency=7.205e-01	polymorphism_score=272.2	prediction=polymorphism	ref_cov=53/37	total_cov=187/135
RA	203	.	NC_000913	581513	0	C	T	bias_e_value=4338070	bias_p_value=0.934596	consensus_reject=FREQUENCY_CUTOFF	consensus_score=550.0	fisher_strand_p_value=0.707493	frequency=7.196e-01	ks_quality_p_value=0.934085	major_base=T	major_cov=133/98	major_frequency=7.196e-01	minor_base=C	minor_cov=54/36	new_cov=133/98	polymorphism_frequency=7.196e-01	polymorphism_score=263.2	prediction=polymorphism	ref_cov=54/36	total_cov=187/134
RA	204	.	NC_000913	581518	0	C	G	bias_e_value=4225180	bias_p_value=0.910275	consensus_reject=FREQUENCY_CUTOFF	consensus_score=566.4	fisher_strand_p_value=0.900475	frequency=7.196e-01	ks_quality_p_value=0.674633	major_base=G	major_cov=134/97	major_frequency=7.196e-01	minor_base=C	minor_cov=53/37	new_cov=134/97	polymorphism_frequency=7.196e-01	polymorphism_score=298.6	prediction=polymorphism	ref_cov=53/37	total_cov=187/135
RA	205	.	NC_000913	581524	0	G	A	bias_e_value=1345670	bias_p_value=0.289911	consensus_reject=FREQUENCY_CUTOFF	consensus_score=439.6	fisher_strand_p_value=0.705314	frequency=7.020e-01	ks_quality_p_value=0.117867	major_base=A	major_cov=117/95	major_frequency=7.020e-01	minor_base=G	minor_cov=52/38	new_cov=117/95	polymorphism_frequency=7.020e-01	polymorphism_score=262.6	prediction=polymorphism	ref_cov=52/38	total_cov=169/133
RA	206	.	NC_000913	581527	0	G	C	bias_e_value=4488970	bias_p_value=0.967106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=506.8	fisher_strand_p_value=0.799289	frequency=7.033e-01	ks_quality_p_value=0.944244	major_base=C	major_cov=116/95	major_frequency=7.033e-01	minor_base=G	minor_cov=51/38	new_cov=116/95	polymorphism_frequency=7.033e-01	polymorphism_score=288.9	prediction=polymorphism	ref_cov=51/38	total_cov=167/133
RA	207	.	NC_000913	581530	0	C	G	bias_e_value=4537050	bias_p_value=0.977465	consensus_reject=FREQUENCY_CUTOFF	consensus_score=496.0	fisher_strand_p_value=0.798102	frequency=7.095e-01	ks_quality_p_value=0.996558	major_base=G	major_cov=116/94	major_frequency=7.095e-01	minor_base=C	minor_cov=49/37	new_cov=116/94	polymorphism_frequency=7.095e-01	polymorphism_score=283.1	prediction=polymorphism	ref_cov=49/37	total_cov=165/132
RA	208	.	NC_000913	581548	0	C	T	bias_e_value=4641610	bias_p_value=0.999991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=326.5	fisher_strand_p_value=1	frequency=6.654e-01	ks_quality_p_value=0.995668	major_base=T	major_cov=96/73	major_frequency=6.654e-01	minor_base=C	minor_cov=49/36	new_cov=96/73	polymorphism_frequency=6.654e-01	polymorphism_score=256.4	prediction=polymorphism	ref_cov=49/36	total_cov=145/109
RA	209	.	NC_000913	581550	0	G	A	bias_e_value=1738140	bias_p_value=0.374465	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.8	fisher_strand_p_value=1	frequency=6.640e-01	ks_quality_p_value=0.120016	major_base=A	major_cov=95/73	major_frequency=6.640e-01	minor_base=G	minor_cov=48/37	new_cov=95/73	polymorphism_frequency=6.640e-01	polymorphism_score=257.5	prediction=polymorphism	ref_cov=48/37	total_cov=144/110
RA	210	.	NC_000913	581554	0	C	T	bias_e_value=3765000	bias_p_value=0.811133	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.2	fisher_strand_p_value=0.526029	frequency=6.306e-01	ks_quality_p_value=0.859775	major_base=T	major_cov=96/73	major_frequency=6.306e-01	minor_base=C	minor_cov=52/47	new_cov=96/73	polymorphism_frequency=6.306e-01	polymorphism_score=303.9	prediction=polymorphism	ref_cov=52/47	total_cov=148/120
RA	211	.	NC_000913	581560	0	C	A	bias_e_value=1692670	bias_p_value=0.364669	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.6	fisher_strand_p_value=0.120726	frequency=6.118e-01	ks_quality_p_value=0.956192	major_base=A	major_cov=96/60	major_frequency=6.118e-01	minor_base=C	minor_cov=51/48	new_cov=96/60	polymorphism_frequency=6.118e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=51/48	total_cov=147/108
RA	212	.	NC_000913	581569	0	G	C	bias_e_value=39503.7	bias_p_value=0.0085107	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.0	fisher_strand_p_value=0.00118118	frequency=5.124e-01	ks_quality_p_value=0.920967	major_base=C	major_cov=77/26	major_frequency=5.124e-01	minor_base=G	minor_cov=51/47	new_cov=77/26	polymorphism_frequency=5.124e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=51/47	total_cov=129/73
RA	213	.	NC_000913	581572	0	T	C	bias_e_value=149.651	bias_p_value=3.22408e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.0	fisher_strand_p_value=0.000388225	frequency=5.228e-01	ks_quality_p_value=0.00594044	major_base=C	major_cov=77/26	major_frequency=5.228e-01	minor_base=T	minor_cov=47/47	new_cov=77/26	polymorphism_frequency=5.228e-01	polymorphism_score=308.7	prediction=polymorphism	ref_cov=47/47	total_cov=126/73
RA	214	.	NC_000913	581575	0	G	T	bias_e_value=22781.7	bias_p_value=0.0049081	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.6	fisher_strand_p_value=0.000610389	frequency=5.306e-01	ks_quality_p_value=0.95146	major_base=T	major_cov=78/26	major_frequency=5.306e-01	minor_base=G	minor_cov=47/45	new_cov=78/26	polymorphism_frequency=5.306e-01	polymorphism_score=310.5	prediction=polymorphism	ref_cov=47/45	total_cov=125/71
RA	215	.	NC_000913	581578	0	G	T	bias_e_value=37908.9	bias_p_value=0.00816711	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.5	fisher_strand_p_value=0.00103765	frequency=5.204e-01	ks_quality_p_value=1	major_base=T	major_cov=76/26	major_frequency=5.204e-01	minor_base=G	minor_cov=48/46	new_cov=76/26	polymorphism_frequency=5.204e-01	polymorphism_score=291.8	prediction=polymorphism	ref_cov=48/46	total_cov=124/72
RA	216	.	NC_000913	581593	0	C	T	bias_e_value=38344.1	bias_p_value=0.00826087	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.8	fisher_strand_p_value=0.00110505	frequency=4.471e-01	ks_quality_p_value=0.951364	major_base=C	major_cov=51/43	major_frequency=5.529e-01	minor_base=T	minor_cov=60/16	new_cov=60/16	polymorphism_frequency=4.471e-01	polymorphism_score=244.8	prediction=polymorphism	ref_cov=51/43	total_cov=111/59
RA	217	.	NC_000913	581596	0	T	C	bias_e_value=70188.8	bias_p_value=0.0151215	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.7	fisher_strand_p_value=0.00211189	frequency=4.438e-01	ks_quality_p_value=1	major_base=T	major_cov=51/43	major_frequency=5.562e-01	minor_base=C	minor_cov=58/17	new_cov=58/17	polymorphism_frequency=4.438e-01	polymorphism_score=223.5	prediction=polymorphism	ref_cov=51/43	total_cov=109/60
RA	218	.	NC_000913	581602	0	C	A	bias_e_value=289130	bias_p_value=0.0622903	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.8	fisher_strand_p_value=0.0113745	frequency=4.038e-01	ks_quality_p_value=0.99998	major_base=C	major_cov=50/43	major_frequency=5.962e-01	minor_base=A	minor_cov=47/16	new_cov=47/16	polymorphism_frequency=4.038e-01	polymorphism_score=164.2	prediction=polymorphism	ref_cov=50/43	total_cov=97/59
RA	219	.	NC_000913	581609	0	C	T	bias_e_value=203236	bias_p_value=0.0437854	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.7	fisher_strand_p_value=0.00741609	frequency=3.741e-01	ks_quality_p_value=1	major_base=C	major_cov=45/42	major_frequency=6.259e-01	minor_base=T	minor_cov=39/13	new_cov=39/13	polymorphism_frequency=3.741e-01	polymorphism_score=152.1	prediction=polymorphism	ref_cov=45/42	total_cov=84/55
RA	220	.	NC_000913	617061	0	G	T	bias_e_value=2791630	bias_p_value=0.60143	consensus_score=254.1	fisher_strand_p_value=0.253521	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=53/17	major_frequency=9.859e-01	minor_base=G	minor_cov=0/1	new_cov=53/17	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/18
RA	221	.	NC_000913	701705	0	G	T	bias_e_value=2.6103e-25	bias_p_value=5.62365e-32	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1290.5	fisher_strand_p_value=7.27477e-34	frequency=2.007e-01	ks_quality_p_value=1	major_base=G	major_cov=248/202	major_frequency=7.993e-01	minor_base=T	minor_cov=0/113	new_cov=0/113	polymorphism_frequency=2.007e-01	polymorphism_score=23.6	prediction=polymorphism	ref_cov=248/202	total_cov=249/315
RA	222	.	NC_000913	706759	0	G	A	bias_e_value=3662020	bias_p_value=0.788948	consensus_score=1575.2	fisher_strand_p_value=0.425339	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=187/254	major_frequency=9.977e-01	minor_base=G	minor_cov=1/0	new_cov=187/254	polymorphism_frequency=9.977e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=188/254
RA	223	.	NC_000913	708774	0	G	A	bias_e_value=425311	bias_p_value=0.0916292	consensus_score=2084.4	fisher_strand_p_value=0.0183284	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=325/272	major_frequency=9.884e-01	minor_base=C	minor_cov=7/0	new_cov=325/272	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=332/273
RA	224	.	NC_000913	710830	0	G	T	bias_e_value=5.43124e-36	bias_p_value=1.17011e-42	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1685.5	fisher_strand_p_value=1.14517e-44	frequency=2.085e-01	ks_quality_p_value=1	major_base=G	major_cov=322/293	major_frequency=7.915e-01	minor_base=T	minor_cov=0/162	new_cov=0/162	polymorphism_frequency=2.085e-01	polymorphism_score=70.1	prediction=polymorphism	ref_cov=322/293	total_cov=323/455
RA	225	.	NC_000913	711968	0	C	T	bias_e_value=3998970	bias_p_value=0.86154	consensus_reject=FREQUENCY_CUTOFF	consensus_score=987.9	fisher_strand_p_value=0.522299	frequency=7.116e-01	ks_quality_p_value=1	major_base=T	major_cov=228/189	major_frequency=7.116e-01	minor_base=C	minor_cov=87/82	new_cov=228/189	polymorphism_frequency=7.116e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=87/82	total_cov=315/272
RA	226	.	NC_000913	832448	0	G	A	bias_e_value=0.287816	bias_p_value=6.20072e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.4	fisher_strand_p_value=3.00679e-09	frequency=2.619e-01	ks_quality_p_value=1	major_base=G	major_cov=49/44	major_frequency=7.381e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.619e-01	polymorphism_score=28.2	prediction=polymorphism	ref_cov=49/44	total_cov=49/77
RA	227	.	NC_000913	847955	0	G	A	bias_e_value=1.04696e-11	bias_p_value=2.25557e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=317.1	fisher_strand_p_value=4.96277e-20	frequency=2.876e-01	ks_quality_p_value=1	major_base=G	major_cov=95/66	major_frequency=7.124e-01	minor_base=A	minor_cov=0/65	new_cov=0/65	polymorphism_frequency=2.876e-01	polymorphism_score=87.6	prediction=polymorphism	ref_cov=95/66	total_cov=95/133
RA	228	.	NC_000913	865108	0	C	A	bias_e_value=41.4458	bias_p_value=8.92911e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.9	fisher_strand_p_value=5.81405e-07	frequency=2.632e-01	ks_quality_p_value=1	major_base=C	major_cov=58/40	major_frequency=7.368e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.632e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=58/40	total_cov=93/41
RA	229	.	NC_000913	866319	0	C	A	bias_e_value=3.3835e-05	bias_p_value=7.28943e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=361.7	fisher_strand_p_value=2.42598e-13	frequency=2.432e-01	ks_quality_p_value=1	major_base=C	major_cov=62/78	major_frequency=7.568e-01	minor_base=A	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=2.432e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=62/78	total_cov=107/78
RA	230	.	NC_000913	878655	0	C	A	bias_e_value=5.11529e-06	bias_p_value=1.10204e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=362.5	fisher_strand_p_value=3.44392e-14	frequency=2.381e-01	ks_quality_p_value=1	major_base=C	major_cov=48/80	major_frequency=7.619e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.381e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=48/80	total_cov=88/80
RA	231	.	NC_000913	881614	0	C	T	bias_e_value=3810020	bias_p_value=0.820834	consensus_score=600.9	fisher_strand_p_value=0.464706	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=91/78	major_frequency=9.941e-01	minor_base=G	minor_cov=0/1	new_cov=91/78	polymorphism_frequency=9.941e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=91/79
RA	232	.	NC_000913	915139	0	T	G	bias_e_value=0.0301972	bias_p_value=6.50571e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.7	fisher_strand_p_value=2.83036e-10	frequency=2.131e-01	ks_quality_p_value=1	major_base=T	major_cov=62/34	major_frequency=7.869e-01	minor_base=G	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.131e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=62/34	total_cov=63/61
RA	233	.	NC_000913	915199	0	A	G	bias_e_value=4.17022e-06	bias_p_value=8.98434e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.8	fisher_strand_p_value=2.78926e-14	frequency=2.414e-01	ks_quality_p_value=1	major_base=A	major_cov=68/20	major_frequency=7.586e-01	minor_base=G	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.414e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=68/20	total_cov=69/48
RA	234	.	NC_000913	997536	0	T	C	bias_e_value=2993220	bias_p_value=0.644862	consensus_score=849.2	fisher_strand_p_value=0.290749	frequency=1	ks_quality_p_value=0.986025	major_base=C	major_cov=161/65	major_frequency=9.956e-01	minor_base=G	minor_cov=0/1	new_cov=161/65	polymorphism_frequency=9.956e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=161/66
RA	235	.	NC_000913	1001094	0	G	T	bias_e_value=0.0593378	bias_p_value=1.27838e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=407.9	fisher_strand_p_value=5.73811e-10	frequency=2.030e-01	ks_quality_p_value=1	major_base=G	major_cov=74/87	major_frequency=7.970e-01	minor_base=T	minor_cov=0/41	new_cov=0/41	polymorphism_frequency=2.030e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=74/87	total_cov=74/128
RA	236	.	NC_000913	1015488	0	C	A	bias_e_value=0.0102624	bias_p_value=2.21093e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=313.9	fisher_strand_p_value=9.16921e-11	frequency=2.556e-01	ks_quality_p_value=1	major_base=C	major_cov=72/62	major_frequency=7.444e-01	minor_base=A	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=2.556e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=72/62	total_cov=118/62
RA	237	.	NC_000913	1023187	0	C	T	bias_e_value=3540980	bias_p_value=0.762871	consensus_score=458.8	fisher_strand_p_value=0.398438	frequency=1	ks_quality_p_value=0.99399	major_base=T	major_cov=50/77	major_frequency=9.922e-01	minor_base=C	minor_cov=1/0	new_cov=50/77	polymorphism_frequency=9.922e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=51/77
RA	238	.	NC_000913	1169836	0	A	G	bias_e_value=3719040	bias_p_value=0.801231	consensus_score=178.2	fisher_strand_p_value=0.44	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=21/28	major_frequency=9.800e-01	minor_base=A	minor_cov=1/0	new_cov=21/28	polymorphism_frequency=9.800e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=22/28
RA	239	.	NC_000913	1189980	0	A	G	consensus_score=209.7	frequency=1	major_base=G	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	240	.	NC_000913	1196220	0	C	T	consensus_score=123.6	frequency=1	major_base=T	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	241	.	NC_000913	1196232	0	C	T	consensus_score=109.2	frequency=1	major_base=T	major_cov=23/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/13
RA	242	.	NC_000913	1196245	0	T	C	consensus_score=101.0	frequency=1	major_base=C	major_cov=22/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/12
RA	243	.	NC_000913	1196247	0	A	G	consensus_score=106.1	frequency=1	major_base=G	major_cov=22/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/12
RA	244	.	NC_000913	1196277	0	C	T	consensus_score=60.7	frequency=1	major_base=T	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	245	.	NC_000913	1196280	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=58.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=12/10	major_frequency=9.565e-01	minor_base=A	minor_cov=1/0	new_cov=12/10	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	246	.	NC_000913	1196283	0	A	G	consensus_score=63.7	frequency=1	major_base=G	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	247	.	NC_000913	1196292	0	C	T	consensus_score=50.0	deleted=1	frequency=1	major_base=T	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	248	.	NC_000913	1196304	0	G	A	consensus_score=42.8	deleted=1	frequency=1	major_base=A	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	249	.	NC_000913	1196316	0	T	A	consensus_score=39.5	deleted=1	frequency=1	major_base=A	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	250	.	NC_000913	1196325	0	A	G	consensus_score=25.4	deleted=1	frequency=1	major_base=G	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	251	.	NC_000913	1196352	0	C	A	consensus_score=16.7	deleted=1	frequency=1	major_base=A	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	252	.	NC_000913	1301992	0	A	T	bias_e_value=2947910	bias_p_value=0.635099	consensus_score=260.5	fisher_strand_p_value=0.278956	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/46	major_frequency=9.625e-01	minor_base=G	minor_cov=0/3	new_cov=31/46	polymorphism_frequency=9.625e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/49
RA	253	.	NC_000913	1306736	0	T	G	consensus_score=247.9	frequency=1	major_base=G	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	254	.	NC_000913	1337394	0	A	G	bias_e_value=3395330	bias_p_value=0.731491	consensus_score=201.4	fisher_strand_p_value=0.363636	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=35/19	major_frequency=9.818e-01	minor_base=T	minor_cov=0/1	new_cov=35/19	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/20
RA	255	.	NC_000913	1358859	0	T	C	consensus_score=276.5	frequency=1	major_base=C	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	256	.	NC_000913	1419679	0	G	C	consensus_score=313.2	frequency=1	major_base=C	major_cov=62/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/24
RA	257	.	NC_000913	1456421	0	G	A	consensus_score=231.6	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	258	.	NC_000913	1466210	0	G	A	bias_e_value=180464	bias_p_value=0.0388793	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.9	fisher_strand_p_value=0.00642969	frequency=2.195e-01	ks_quality_p_value=1	major_base=G	major_cov=11/21	major_frequency=7.805e-01	minor_base=A	minor_cov=8/1	new_cov=8/1	polymorphism_frequency=2.195e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=11/21	total_cov=19/22
RA	259	.	NC_000913	1466393	0	C	T	bias_e_value=1132320	bias_p_value=0.243948	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.4	fisher_strand_p_value=0.0654685	frequency=2.703e-01	ks_quality_p_value=1	major_base=C	major_cov=12/15	major_frequency=7.297e-01	minor_base=T	minor_cov=1/9	new_cov=1/9	polymorphism_frequency=2.703e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=12/15	total_cov=13/24
RA	260	.	NC_000913	1466438	0	T	G	bias_e_value=1169890	bias_p_value=0.252041	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.5	fisher_strand_p_value=0.0696124	frequency=2.500e-01	ks_quality_p_value=0.983471	major_base=T	major_cov=13/17	major_frequency=7.500e-01	minor_base=G	minor_cov=1/9	new_cov=1/9	polymorphism_frequency=2.500e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=13/17	total_cov=14/26
RA	261	.	NC_000913	1502770	0	T	C	bias_e_value=79.8874	bias_p_value=1.7211e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.9	fisher_strand_p_value=1.17443e-06	frequency=2.533e-01	ks_quality_p_value=1	major_base=T	major_cov=34/22	major_frequency=7.467e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.533e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=34/22	total_cov=34/41
RA	262	.	NC_000913	1582030	0	A	C	consensus_score=303.5	frequency=1	major_base=C	major_cov=34/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/49
RA	263	.	NC_000913	1643679	0	A	T	consensus_score=224.5	frequency=1	major_base=T	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	264	.	NC_000913	1652331	0	T	C	consensus_score=351.4	frequency=1	major_base=C	major_cov=45/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/49
RA	265	.	NC_000913	1668027	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=255.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=47/28	major_frequency=9.868e-01	minor_base=C	minor_cov=1/0	new_cov=47/28	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/28
RA	266	.	NC_000913	1815135	0	T	C	bias_e_value=4440.02	bias_p_value=0.00095656	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.4	fisher_strand_p_value=9.30268e-05	frequency=2.258e-01	ks_quality_p_value=1	major_base=T	major_cov=20/28	major_frequency=7.742e-01	minor_base=C	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.258e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=20/28	total_cov=34/28
RA	267	.	NC_000913	1951320	0	G	A	bias_e_value=4398320	bias_p_value=0.947577	consensus_score=1139.3	fisher_strand_p_value=0.694193	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=152/207	major_frequency=8.349e-01	minor_base=G	minor_cov=28/43	new_cov=152/207	polymorphism_frequency=8.349e-01	polymorphism_score=182.5	prediction=consensus	ref_cov=28/43	total_cov=180/250
RA	268	.	NC_000913	1951332	0	T	C	bias_e_value=4605030	bias_p_value=0.992109	consensus_score=997.2	fisher_strand_p_value=0.891221	frequency=1	ks_quality_p_value=0.984082	major_base=C	major_cov=138/191	major_frequency=8.350e-01	minor_base=T	minor_cov=28/37	new_cov=138/191	polymorphism_frequency=8.350e-01	polymorphism_score=177.8	prediction=consensus	ref_cov=28/37	total_cov=166/228
RA	269	.	NC_000913	1951335	0	C	T	bias_e_value=4368800	bias_p_value=0.941218	consensus_score=1012.8	fisher_strand_p_value=0.786418	frequency=1	ks_quality_p_value=0.861292	major_base=T	major_cov=138/190	major_frequency=8.325e-01	minor_base=C	minor_cov=29/37	new_cov=138/190	polymorphism_frequency=8.325e-01	polymorphism_score=174.1	prediction=consensus	ref_cov=29/37	total_cov=167/227
RA	270	.	NC_000913	1951338	0	C	T	bias_e_value=4518240	bias_p_value=0.973412	consensus_score=1024.4	fisher_strand_p_value=0.784123	frequency=1	ks_quality_p_value=0.992757	major_base=T	major_cov=139/190	major_frequency=8.350e-01	minor_base=C	minor_cov=29/36	new_cov=139/190	polymorphism_frequency=8.350e-01	polymorphism_score=168.1	prediction=consensus	ref_cov=29/36	total_cov=168/226
RA	271	.	NC_000913	1951386	0	C	T	bias_e_value=837809	bias_p_value=0.180498	consensus_reject=FREQUENCY_CUTOFF	consensus_score=584.9	fisher_strand_p_value=0.0436998	frequency=7.745e-01	ks_quality_p_value=1	major_base=T	major_cov=89/124	major_frequency=7.745e-01	minor_base=C	minor_cov=35/27	new_cov=89/124	polymorphism_frequency=7.745e-01	polymorphism_score=150.2	prediction=polymorphism	ref_cov=35/27	total_cov=124/152
RA	272	.	NC_000913	1951387	0	A	C	bias_e_value=42842.2	bias_p_value=0.00922995	consensus_reject=FREQUENCY_CUTOFF	consensus_score=580.5	fisher_strand_p_value=0.00119397	frequency=7.482e-01	ks_quality_p_value=1	major_base=C	major_cov=80/125	major_frequency=7.482e-01	minor_base=A	minor_cov=43/26	new_cov=80/125	polymorphism_frequency=7.482e-01	polymorphism_score=145.9	prediction=polymorphism	ref_cov=43/26	total_cov=124/151
RA	273	.	NC_000913	1951412	0	A	G	bias_e_value=1249110	bias_p_value=0.269108	consensus_reject=FREQUENCY_CUTOFF	consensus_score=505.1	fisher_strand_p_value=0.0750505	frequency=7.628e-01	ks_quality_p_value=0.998493	major_base=G	major_cov=80/113	major_frequency=7.628e-01	minor_base=A	minor_cov=33/27	new_cov=80/113	polymorphism_frequency=7.628e-01	polymorphism_score=163.9	prediction=polymorphism	ref_cov=33/27	total_cov=113/141
RA	274	.	NC_000913	1951448	0	G	T	bias_e_value=351812	bias_p_value=0.0757946	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.8	fisher_strand_p_value=0.0611259	frequency=6.791e-01	ks_quality_p_value=0.236857	major_base=T	major_cov=57/70	major_frequency=6.791e-01	minor_base=G	minor_cov=36/24	new_cov=57/70	polymorphism_frequency=6.791e-01	polymorphism_score=196.5	prediction=polymorphism	ref_cov=36/24	total_cov=93/94
RA	275	.	NC_000913	1986220	0	A	G	bias_e_value=2984110	bias_p_value=0.642898	consensus_score=309.0	fisher_strand_p_value=0.285117	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=35/54	major_frequency=9.674e-01	minor_base=T	minor_cov=0/3	new_cov=35/54	polymorphism_frequency=9.674e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/57
RA	276	.	NC_000913	2040433	0	C	A	consensus_score=237.0	frequency=1	major_base=A	major_cov=29/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/40
RA	277	.	NC_000913	2043522	0	C	A	consensus_score=343.4	frequency=1	major_base=A	major_cov=54/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/43
RA	278	.	NC_000913	2105739	0	T	A	consensus_score=378.0	frequency=1	major_base=A	major_cov=56/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/50
RA	279	.	NC_000913	2173363	0	C	.	bias_e_value=4639490	bias_p_value=0.999535	consensus_score=371.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.969648	major_base=.	major_cov=36/36	major_frequency=9.863e-01	minor_base=C	minor_cov=1/0	new_cov=36/36	polymorphism_frequency=9.863e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/0	total_cov=37/36
RA	280	.	NC_000913	2173364	0	C	.	bias_e_value=4639490	bias_p_value=0.999535	consensus_score=371.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.969648	major_base=.	major_cov=36/36	major_frequency=9.863e-01	minor_base=C	minor_cov=1/0	new_cov=36/36	polymorphism_frequency=9.863e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/0	total_cov=37/36
RA	281	.	NC_000913	2288418	0	G	T	bias_e_value=0.115185	bias_p_value=2.48156e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=284.1	fisher_strand_p_value=1.14974e-09	frequency=2.222e-01	ks_quality_p_value=1	major_base=G	major_cov=60/45	major_frequency=7.778e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.222e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=60/45	total_cov=60/75
RA	282	.	NC_000913	2316887	0	G	A	consensus_score=311.9	frequency=1	major_base=A	major_cov=41/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	283	.	NC_000913	2316895	0	G	A	consensus_score=305.3	frequency=1	major_base=A	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	284	.	NC_000913	2406410	0	C	T	consensus_score=224.8	frequency=1	major_base=T	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	285	.	NC_000913	2477265	0	A	C	bias_e_value=2.29571e-05	bias_p_value=4.94589e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.8	fisher_strand_p_value=1.62434e-13	frequency=3.500e-01	ks_quality_p_value=1	major_base=A	major_cov=10/42	major_frequency=6.500e-01	minor_base=C	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.500e-01	polymorphism_score=27.8	prediction=polymorphism	ref_cov=10/42	total_cov=38/42
RA	286	.	NC_000913	2767445	0	C	A	bias_e_value=0.00385445	bias_p_value=8.30404e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.1	fisher_strand_p_value=3.304e-11	frequency=3.077e-01	ks_quality_p_value=1	major_base=C	major_cov=19/44	major_frequency=6.923e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.077e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=19/44	total_cov=48/44
RA	287	.	NC_000913	2867332	0	C	A	consensus_score=335.9	frequency=1	major_base=A	major_cov=61/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/38
RA	288	.	NC_000913	2867455	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=430.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=86/40	major_frequency=9.921e-01	minor_base=C	minor_cov=1/0	new_cov=86/40	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=87/40
RA	289	.	NC_000913	2990480	0	C	A	bias_e_value=0.0147401	bias_p_value=3.17562e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.5	fisher_strand_p_value=1.33796e-10	frequency=2.829e-01	ks_quality_p_value=1	major_base=C	major_cov=55/54	major_frequency=7.171e-01	minor_base=A	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=2.829e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=55/54	total_cov=99/55
RA	290	.	NC_000913	3054886	0	G	T	bias_e_value=0.00111337	bias_p_value=2.39866e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.4	fisher_strand_p_value=9.07713e-12	frequency=2.887e-01	ks_quality_p_value=1	major_base=G	major_cov=20/49	major_frequency=7.113e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.887e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=20/49	total_cov=48/49
RA	291	.	NC_000913	3054894	0	G	T	bias_e_value=9.46608e-05	bias_p_value=2.03938e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.4	fisher_strand_p_value=7.03659e-13	frequency=3.617e-01	ks_quality_p_value=1	major_base=G	major_cov=12/48	major_frequency=6.383e-01	minor_base=T	minor_cov=32/2	new_cov=32/2	polymorphism_frequency=3.617e-01	polymorphism_score=32.0	prediction=polymorphism	ref_cov=12/48	total_cov=44/50
RA	292	.	NC_000913	3060221	0	G	A	consensus_score=309.8	frequency=1	major_base=A	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	293	.	NC_000913	3060380	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=342.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/55	major_frequency=9.899e-01	minor_base=C	minor_cov=0/1	new_cov=43/55	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	294	.	NC_000913	3184065	0	A	T	consensus_score=342.1	frequency=1	major_base=T	major_cov=55/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/39
RA	295	.	NC_000913	3388041	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=291.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=46/31	major_frequency=9.872e-01	minor_base=A	minor_cov=1/0	new_cov=46/31	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/31
RA	296	.	NC_000913	3433680	0	C	A	bias_e_value=0.0349587	bias_p_value=7.53152e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.5	fisher_strand_p_value=3.29862e-10	frequency=2.696e-01	ks_quality_p_value=1	major_base=C	major_cov=34/50	major_frequency=7.304e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.696e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=34/50	total_cov=65/50
RA	297	.	NC_000913	3560455	1	.	G	consensus_score=417.8	frequency=1	major_base=G	major_cov=52/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/64
RA	298	.	NC_000913	3602706	0	C	A	bias_e_value=12056.4	bias_p_value=0.00259744	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.0	fisher_strand_p_value=0.000283283	frequency=2.097e-01	ks_quality_p_value=1	major_base=C	major_cov=32/17	major_frequency=7.903e-01	minor_base=A	minor_cov=1/12	new_cov=1/12	polymorphism_frequency=2.097e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=32/17	total_cov=33/29
RA	299	.	NC_000913	3603627	0	G	T	consensus_score=345.7	frequency=1	major_base=T	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	300	.	NC_000913	3707947	0	C	A	bias_e_value=4044690	bias_p_value=0.87139	consensus_score=527.2	fisher_strand_p_value=0.537815	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=97/55	major_frequency=9.870e-01	minor_base=C	minor_cov=2/0	new_cov=97/55	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=99/55
RA	301	.	NC_000913	3741871	0	G	T	bias_e_value=0.36133	bias_p_value=7.78451e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.5	fisher_strand_p_value=3.81907e-09	frequency=2.541e-01	ks_quality_p_value=1	major_base=G	major_cov=50/41	major_frequency=7.459e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.541e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=50/41	total_cov=50/72
RA	302	.	NC_000913	3837039	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=558.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/96	major_frequency=9.938e-01	minor_base=C	minor_cov=0/1	new_cov=63/96	polymorphism_frequency=9.938e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/97
RA	303	.	NC_000913	3841663	0	G	A	bias_e_value=196.93	bias_p_value=4.24268e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.1	fisher_strand_p_value=3.10048e-06	frequency=2.982e-01	ks_quality_p_value=1	major_base=G	major_cov=26/14	major_frequency=7.018e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.982e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=26/14	total_cov=26/31
RA	304	.	NC_000913	3844617	0	G	T	consensus_score=312.5	frequency=1	major_base=T	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	305	.	NC_000913	3911533	0	C	A	bias_e_value=0.00011096	bias_p_value=2.39053e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.8	fisher_strand_p_value=8.29527e-13	frequency=3.101e-01	ks_quality_p_value=1	major_base=C	major_cov=35/54	major_frequency=6.899e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=3.101e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=35/54	total_cov=75/54
RA	306	.	NC_000913	4136467	0	A	C	bias_e_value=6350.73	bias_p_value=0.0013682	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.6	fisher_strand_p_value=0.000138408	frequency=2.759e-01	ks_quality_p_value=1	major_base=A	major_cov=20/22	major_frequency=7.241e-01	minor_base=C	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.759e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=20/22	total_cov=37/22
RA	307	.	NC_000913	4183829	0	T	C	consensus_score=354.6	frequency=1	major_base=C	major_cov=59/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/39
RA	308	.	NC_000913	4223638	0	T	C	bias_e_value=3689900	bias_p_value=0.794953	consensus_score=411.3	fisher_strand_p_value=0.432432	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=47/63	major_frequency=9.910e-01	minor_base=A	minor_cov=1/0	new_cov=47/63	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/63
RA	309	.	NC_000913	4248791	0	G	A	consensus_score=316.3	frequency=1	major_base=A	major_cov=39/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/51
RA	310	.	NC_000913	4283161	0	A	T	consensus_score=429.7	frequency=1	major_base=T	major_cov=40/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/80
RA	311	.	NC_000913	4296268	0	T	C	bias_e_value=3379110	bias_p_value=0.727997	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.0	fisher_strand_p_value=0.360199	frequency=3.654e-01	ks_quality_p_value=1	major_base=T	major_cov=24/9	major_frequency=6.346e-01	minor_base=C	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=3.654e-01	polymorphism_score=42.9	prediction=polymorphism	ref_cov=24/9	total_cov=36/17
RA	312	.	NC_000913	4296303	0	A	G	bias_e_value=260916	bias_p_value=0.056212	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.9	fisher_strand_p_value=0.0100348	frequency=2.391e-01	ks_quality_p_value=1	major_base=A	major_cov=26/9	major_frequency=7.609e-01	minor_base=G	minor_cov=3/8	new_cov=3/8	polymorphism_frequency=2.391e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=26/9	total_cov=29/17
RA	313	.	NC_000913	4296380	1	.	C	bias_e_value=4641650	bias_p_value=1	consensus_score=227.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=45/25	major_frequency=9.722e-01	minor_base=T	minor_cov=1/1	new_cov=45/25	polymorphism_frequency=9.722e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/0	total_cov=46/26
RA	314	.	NC_000913	4296380	2	.	G	consensus_score=239.5	frequency=1	major_base=G	major_cov=46/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/26
RA	315	.	NC_000913	4360965	0	C	A	bias_e_value=6.2994e-07	bias_p_value=1.35715e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=380.2	fisher_strand_p_value=3.973e-15	frequency=2.160e-01	ks_quality_p_value=1	major_base=C	major_cov=39/88	major_frequency=7.840e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.160e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=39/88	total_cov=75/88
RA	316	.	NC_000913	4427822	0	C	A	bias_e_value=0.000220622	bias_p_value=4.7531e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.1	fisher_strand_p_value=1.69116e-12	frequency=2.635e-01	ks_quality_p_value=1	major_base=C	major_cov=45/64	major_frequency=7.365e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.635e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=45/64	total_cov=85/64
RA	317	.	NC_000913	4440855	0	G	A	consensus_score=390.2	frequency=1	major_base=A	major_cov=59/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/54
RA	318	.	NC_000913	4441042	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=319.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/49	major_frequency=9.890e-01	minor_base=G	minor_cov=0/1	new_cov=41/49	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	319	.	NC_000913	4482049	0	G	T	bias_e_value=187020	bias_p_value=0.0402916	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.4	fisher_strand_p_value=0.00671074	frequency=2.031e-01	ks_quality_p_value=1	major_base=G	major_cov=32/19	major_frequency=7.969e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.031e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=32/19	total_cov=45/19
RA	320	.	NC_000913	4510238	0	T	G	bias_e_value=82375.2	bias_p_value=0.017747	consensus_score=419.3	fisher_strand_p_value=0.00254485	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=70/48	major_frequency=9.440e-01	minor_base=T	minor_cov=0/7	new_cov=70/48	polymorphism_frequency=9.440e-01	polymorphism_score=-6.9	prediction=consensus	ref_cov=0/7	total_cov=70/55
RA	321	.	NC_000913	4618146	0	G	T	bias_e_value=57.9173	bias_p_value=1.24777e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.7	fisher_strand_p_value=8.31872e-07	frequency=2.667e-01	ks_quality_p_value=1	major_base=G	major_cov=35/31	major_frequency=7.333e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.667e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=35/31	total_cov=36/55
RA	322	.	NC_000913	4640877	0	G	T	consensus_score=401.0	frequency=1	major_base=T	major_cov=42/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/73
MC	323	.	NC_000913	257908	258683	768	0	left_inside_cov=0	left_outside_cov=122	right_inside_cov=1	right_outside_cov=123
MC	324	.	NC_000913	674957	688785	0	939	left_inside_cov=0	left_outside_cov=113	right_inside_cov=21	right_outside_cov=22
MC	325	.	NC_000913	1196292	1211440	0	0	left_inside_cov=20	left_outside_cov=22	right_inside_cov=21	right_outside_cov=22
MC	326	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=88	right_inside_cov=0	right_outside_cov=88
MC	327	.	NC_000913	1962197	1979451	0	0	left_inside_cov=0	left_outside_cov=117	right_inside_cov=0	right_outside_cov=109
MC	328	.	NC_000913	3096674	3131088	0	946	left_inside_cov=0	left_outside_cov=96	right_inside_cov=19	right_outside_cov=22
MC	329	.	NC_000913	3423908	3424440	325	202	left_inside_cov=21	left_outside_cov=22	right_inside_cov=21	right_outside_cov=22
MC	330	.	NC_000913	3815859	3815940	0	0	left_inside_cov=0	left_outside_cov=111	right_inside_cov=4	right_outside_cov=114
JC	331	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=77	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=299	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=292	max_left_minus=292	max_left_plus=291	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=148	max_min_right_minus=148	max_min_right_plus=148	max_pos_hash_score=598	max_right=298	max_right_minus=298	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.29	new_junction_read_count=128	polymorphism_frequency=1.000e+00	pos_hash_score=77	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=125
JC	332	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=48	coverage_plus=73	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=287	max_min_left=135	max_min_left_minus=79	max_min_left_plus=135	max_min_right=145	max_min_right_minus=132	max_min_right_plus=145	max_pos_hash_score=582	max_right=290	max_right_minus=290	max_right_plus=283	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.26	new_junction_read_count=122	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=121
JC	333	.	NC_000913	273955	1	NC_000913	674956	-1	0	alignment_overlap=0	coverage_minus=53	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__273955__1__NC_000913__674956__-1__0____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=293	max_min_left=145	max_min_left_minus=134	max_min_left_plus=145	max_min_right=149	max_min_right_minus=149	max_min_right_plus=146	max_pos_hash_score=598	max_right=296	max_right_minus=296	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=113	polymorphism_frequency=1.000e+00	pos_hash_score=82	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=111
JC	334	.	NC_000913	315229	1	NC_000913	3817266	1	-2	alignment_overlap=-2	coverage_minus=70	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=297	key=NC_000913__315229__1__NC_000913__3817266__1__-2__TC__300__300__0__0	max_left=293	max_left_minus=284	max_left_plus=293	max_min_left=147	max_min_left_minus=147	max_min_left_plus=147	max_min_right=144	max_min_right_minus=142	max_min_right_plus=144	max_pos_hash_score=594	max_right=296	max_right_minus=296	max_right_plus=296	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.34	new_junction_read_count=132	polymorphism_frequency=1.000e+00	pos_hash_score=95	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=128	unique_read_sequence=TC
JC	335	.	NC_000913	316483	-1	NC_000913	637144	-1	0	alignment_overlap=0	coverage_minus=68	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__316483__-1__NC_000913__637144__-1__0____300__300__1__0	max_left=291	max_left_minus=291	max_left_plus=265	max_min_left=147	max_min_left_minus=147	max_min_left_plus=146	max_min_right=140	max_min_right_minus=140	max_min_right_plus=140	max_pos_hash_score=598	max_right=299	max_right_minus=299	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=108	polymorphism_frequency=1.000e+00	pos_hash_score=77	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=296	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=107
JC	336	.	NC_000913	349693	-1	NC_000913	349973	1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=9.013e-02	junction_possible_overlap_registers=282	key=NC_000913__349693__-1__NC_000913__349956__1__17____300__300__0__0	max_left=223	max_left_minus=223	max_left_plus=170	max_min_left=133	max_min_left_minus=0	max_min_left_plus=133	max_min_right=120	max_min_right_minus=120	max_min_right_plus=113	max_pos_hash_score=564	max_right=150	max_right_minus=120	max_right_plus=150	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=9.013e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.36	side_1_overlap=17	side_1_possible_overlap_registers=299	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=5
JC	337	.	NC_000913	485359	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=59	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__485359__1__NC_000913__1469240__-1__0____300__300__0__1	max_left=295	max_left_minus=275	max_left_plus=295	max_min_left=141	max_min_left_minus=141	max_min_left_plus=139	max_min_right=147	max_min_right_minus=143	max_min_right_plus=147	max_pos_hash_score=598	max_right=296	max_right_minus=296	max_right_plus=292	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.13	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=111
JC	338	.	NC_000913	485363	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=39	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__485363__-1__NC_000913__1467910__1__0____300__300__0__1	max_left=284	max_left_minus=284	max_left_plus=280	max_min_left=131	max_min_left_minus=121	max_min_left_plus=131	max_min_right=150	max_min_right_minus=150	max_min_right_plus=149	max_pos_hash_score=598	max_right=293	max_right_minus=279	max_right_plus=293	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.80	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=78
JC	339	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=35	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=6.393e-01	junction_possible_overlap_registers=297	key=NC_000913__566774__-1__NC_000913__568034__1__2____300__300__0__0	max_left=234	max_left_minus=234	max_left_plus=225	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=133	max_min_right_minus=133	max_min_right_plus=127	max_pos_hash_score=594	max_right=133	max_right_minus=133	max_right_plus=127	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=1.61	new_junction_read_count=159	polymorphism_frequency=6.393e-01	pos_hash_score=37	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=2	side_1_possible_overlap_registers=299	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=297	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=78
JC	340	.	NC_000913	566777	1	NC_000913	691512	1	0	alignment_overlap=0	coverage_minus=102	coverage_plus=87	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__566777__1__NC_000913__691512__1__0____300__300__1__0	max_left=296	max_left_minus=294	max_left_plus=296	max_min_left=149	max_min_left_minus=142	max_min_left_plus=149	max_min_right=148	max_min_right_minus=148	max_min_right_plus=146	max_pos_hash_score=598	max_right=299	max_right_minus=295	max_right_plus=299	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.95	new_junction_read_count=194	polymorphism_frequency=1.000e+00	pos_hash_score=109	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=296	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=189
JC	341	.	NC_000913	568034	-1	NC_000913	577402	-1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=34	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__568034__-1__NC_000913__577402__-1__0____300__300__1__0	max_left=296	max_left_minus=296	max_left_plus=285	max_min_left=146	max_min_left_minus=124	max_min_left_plus=146	max_min_right=140	max_min_right_minus=140	max_min_right_plus=109	max_pos_hash_score=598	max_right=299	max_right_minus=299	max_right_plus=271	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.69	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=296	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	342	.	NC_000913	568034	-1	NC_000913	691514	-1	0	alignment_overlap=1	coverage_minus=40	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__568034__-1__NC_000913__691515__-1__1____300__300__1__0	max_left=297	max_left_minus=297	max_left_plus=296	max_min_left=136	max_min_left_minus=136	max_min_left_plus=120	max_min_right=144	max_min_right_minus=138	max_min_right_plus=144	max_pos_hash_score=596	max_right=294	max_right_minus=294	max_right_plus=289	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.81	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=79
JC	343	.	NC_000913	577400	1	NC_000913	1095502	-1	0	alignment_overlap=1	coverage_minus=38	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__577400__1__NC_000913__1095503__-1__1____300__300__0__1	max_left=294	max_left_minus=287	max_left_plus=294	max_min_left=149	max_min_left_minus=142	max_min_left_plus=149	max_min_right=149	max_min_right_minus=149	max_min_right_plus=135	max_pos_hash_score=596	max_right=282	max_right_minus=282	max_right_plus=279	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.74	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=296	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=73
JC	344	.	NC_000913	607765	1	NC_000913	3722075	-1	0	alignment_overlap=1	coverage_minus=58	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__607764__1__NC_000913__3722075__-1__1____300__300__0__0	max_left=296	max_left_minus=296	max_left_plus=295	max_min_left=145	max_min_left_minus=135	max_min_left_plus=145	max_min_right=145	max_min_right_minus=131	max_min_right_plus=145	max_pos_hash_score=596	max_right=298	max_right_minus=298	max_right_plus=287	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=98	polymorphism_frequency=9.898e-01	pos_hash_score=64	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=96
JC	345	.	NC_000913	607767	-1	NC_000913	3720633	1	0	alignment_overlap=2	coverage_minus=45	coverage_plus=65	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=297	key=NC_000913__607769__-1__NC_000913__3720633__1__2____300__300__0__0	max_left=295	max_left_minus=291	max_left_plus=295	max_min_left=142	max_min_left_minus=133	max_min_left_plus=142	max_min_right=147	max_min_right_minus=147	max_min_right_plus=145	max_pos_hash_score=594	max_right=294	max_right_minus=294	max_right_plus=290	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.16	new_junction_read_count=114	polymorphism_frequency=9.741e-01	pos_hash_score=63	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=110
JC	346	.	NC_000913	628460	-1	NC_000913	628623	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.134e-02	junction_possible_overlap_registers=290	key=NC_000913__628460__-1__NC_000913__628614__1__9____300__300__0__0	max_left=266	max_left_minus=266	max_left_plus=175	max_min_left=80	max_min_left_minus=0	max_min_left_plus=80	max_min_right=116	max_min_right_minus=25	max_min_right_plus=116	max_pos_hash_score=580	max_right=211	max_right_minus=25	max_right_plus=211	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.134e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.62	side_1_overlap=9	side_1_possible_overlap_registers=299	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	347	.	NC_000913	637142	1	NC_000913	1095502	-1	0	alignment_overlap=1	coverage_minus=64	coverage_plus=72	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__637142__1__NC_000913__1095503__-1__1____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=294	max_min_left=145	max_min_left_minus=145	max_min_left_plus=139	max_min_right=145	max_min_right_minus=145	max_min_right_plus=142	max_pos_hash_score=596	max_right=296	max_right_minus=296	max_right_plus=289	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.39	new_junction_read_count=137	polymorphism_frequency=1.000e+00	pos_hash_score=93	prediction=consensus	read_count_offset=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=296	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=136
JC	348	.	NC_000913	696504	-1	NC_000913	696940	1	0	alignment_overlap=29	coverage_minus=5	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=6.591e-02	junction_possible_overlap_registers=270	key=NC_000913__696504__-1__NC_000913__696911__1__29____300__300__0__0	max_left=264	max_left_minus=200	max_left_plus=264	max_min_left=127	max_min_left_minus=127	max_min_left_plus=122	max_min_right=55	max_min_right_minus=52	max_min_right_plus=55	max_pos_hash_score=540	max_right=222	max_right_minus=164	max_right_plus=222	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.12	new_junction_read_count=11	polymorphism_frequency=6.591e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.68	side_1_overlap=29	side_1_possible_overlap_registers=299	side_1_read_count=167	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.80	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=161	side_2_redundant=0	total_non_overlap_reads=11
JC	349	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=11	coverage_plus=12	flanking_left=300	flanking_right=300	frequency=1.694e-01	junction_possible_overlap_registers=221	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=192	max_left_minus=192	max_left_plus=183	max_min_left=86	max_min_left_minus=63	max_min_left_plus=86	max_min_right=98	max_min_right_minus=98	max_min_right_plus=97	max_pos_hash_score=442	max_right=184	max_right_minus=138	max_right_plus=184	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.33	new_junction_read_count=24	polymorphism_frequency=1.694e-01	pos_hash_score=17	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.57	side_1_overlap=78	side_1_possible_overlap_registers=299	side_1_read_count=156	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.64	side_2_overlap=0	side_2_possible_overlap_registers=221	side_2_read_count=120	side_2_redundant=0	total_non_overlap_reads=23
JC	350	.	NC_000913	700754	1	NC_000913	1951242	1	0	alignment_overlap=11	coverage_minus=222	coverage_plus=242	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=288	key=NC_000913__700754__1__NC_000913__1951231__1__11____300__300__0__0	max_left=288	max_left_minus=287	max_left_plus=288	max_min_left=138	max_min_left_minus=138	max_min_left_plus=131	max_min_right=144	max_min_right_minus=144	max_min_right_plus=142	max_pos_hash_score=576	max_right=249	max_right_minus=249	max_right_plus=245	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=5.37	new_junction_read_count=513	polymorphism_frequency=8.162e-01	pos_hash_score=167	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.64	side_1_overlap=11	side_1_possible_overlap_registers=299	side_1_read_count=163	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=464
JC	351	.	NC_000913	780629	-1	NC_000913	780919	1	0	alignment_overlap=76	coverage_minus=6	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.242e-01	junction_possible_overlap_registers=223	key=NC_000913__780629__-1__NC_000913__780843__1__76____300__300__0__0	max_left=216	max_left_minus=216	max_left_plus=195	max_min_left=105	max_min_left_minus=105	max_min_left_plus=71	max_min_right=92	max_min_right_minus=71	max_min_right_plus=92	max_pos_hash_score=446	max_right=162	max_right_minus=119	max_right_plus=162	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.20	new_junction_read_count=15	polymorphism_frequency=1.242e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.68	side_1_overlap=76	side_1_possible_overlap_registers=299	side_1_read_count=167	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=223	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=14
JC	352	.	NC_000913	780733	-1	NC_000913	780740	1	-21	alignment_overlap=-21	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.002e-02	junction_possible_overlap_registers=278	key=NC_000913__780733__-1__NC_000913__780740__1__-21__TGACGGTGGGTTCGGTGGAAG__300__300__0__0	max_left=239	max_left_minus=239	max_left_plus=185	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=95	max_min_right_minus=69	max_min_right_plus=95	max_pos_hash_score=556	max_right=95	max_right_minus=69	max_right_plus=95	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.002e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.45	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=144	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=TGACGGTGGGTTCGGTGGAAG
JC	353	.	NC_000913	781016	-1	NC_000913	2521253	1	-33	alignment_overlap=-33	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.321e-02	junction_possible_overlap_registers=266	key=NC_000913__781016__-1__NC_000913__2521253__1__-33__TCCTGAATGATTAAGGCAGCATAATCCCGCAAG__300__300__0__0	max_left=257	max_left_minus=257	max_left_plus=196	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=87	max_min_right_minus=45	max_min_right_plus=87	max_pos_hash_score=532	max_right=87	max_right_minus=45	max_right_plus=87	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.321e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=TCCTGAATGATTAAGGCAGCATAATCCCGCAAG
JC	354	.	NC_000913	781282	-1	NC_000913	781771	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.849e-02	junction_possible_overlap_registers=291	key=NC_000913__781282__-1__NC_000913__781763__1__8____300__300__0__0	max_left=259	max_left_minus=259	max_left_plus=61	max_min_left=61	max_min_left_minus=60	max_min_left_plus=61	max_min_right=32	max_min_right_minus=32	max_min_right_plus=0	max_pos_hash_score=582	max_right=224	max_right_minus=224	max_right_plus=224	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=2.849e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=119	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.63	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=157	side_2_redundant=0	total_non_overlap_reads=4
JC	355	.	NC_000913	781322	-1	NC_000913	781811	1	0	alignment_overlap=39	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.446e-02	junction_possible_overlap_registers=260	key=NC_000913__781322__-1__NC_000913__781772__1__39____300__300__0__0	max_left=221	max_left_minus=221	max_left_plus=76	max_min_left=76	max_min_left_minus=76	max_min_left_plus=76	max_min_right=40	max_min_right_minus=40	max_min_right_plus=0	max_pos_hash_score=520	max_right=172	max_right_minus=172	max_right_plus=171	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.446e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=39	side_1_possible_overlap_registers=299	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.63	side_2_overlap=0	side_2_possible_overlap_registers=260	side_2_read_count=141	side_2_redundant=0	total_non_overlap_reads=3
JC	356	.	NC_000913	781577	1	NC_000913	2521006	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=6.444e-02	junction_possible_overlap_registers=295	key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0	max_left=235	max_left_minus=233	max_left_plus=235	max_min_left=70	max_min_left_minus=70	max_min_left_plus=33	max_min_right=100	max_min_right_minus=47	max_min_right_plus=100	max_pos_hash_score=590	max_right=274	max_right_minus=226	max_right_plus=274	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=6.444e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.37	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=136	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=GAAG
JC	357	.	NC_000913	1094245	1	NC_000913	1221218	1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1094245__1__NC_000913__1221218__1__0____300__300__1__0	max_left=296	max_left_minus=296	max_left_plus=292	max_min_left=139	max_min_left_minus=137	max_min_left_plus=139	max_min_right=150	max_min_right_minus=140	max_min_right_plus=150	max_pos_hash_score=598	max_right=298	max_right_minus=295	max_right_plus=298	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.44	new_junction_read_count=44	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=296	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=44
JC	358	.	NC_000913	1094245	1	NC_000913	3817269	-1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1094245__1__NC_000913__3817269__-1__0____300__300__1__0	max_left=291	max_left_minus=266	max_left_plus=291	max_min_left=137	max_min_left_minus=137	max_min_left_plus=127	max_min_right=150	max_min_right_minus=140	max_min_right_plus=150	max_pos_hash_score=598	max_right=296	max_right_minus=280	max_right_plus=296	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.82	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=80
JC	359	.	NC_000913	1095502	-1	NC_000913	1221220	-1	0	alignment_overlap=0	coverage_minus=35	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1095502__-1__NC_000913__1221220__-1__0____300__300__1__0	max_left=296	max_left_minus=296	max_left_plus=296	max_min_left=149	max_min_left_minus=140	max_min_left_plus=149	max_min_right=148	max_min_right_minus=140	max_min_right_plus=148	max_pos_hash_score=598	max_right=295	max_right_minus=295	max_right_plus=286	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.76	new_junction_read_count=75	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=296	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	360	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.713e-02	junction_possible_overlap_registers=279	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=172	max_left_minus=67	max_left_plus=172	max_min_left=88	max_min_left_minus=67	max_min_left_plus=88	max_min_right=108	max_min_right_minus=0	max_min_right_plus=108	max_pos_hash_score=558	max_right=213	max_right_minus=213	max_right_plus=186	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=8.713e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.32	side_1_overlap=20	side_1_possible_overlap_registers=299	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=3
JC	361	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=40	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=285	max_left_plus=294	max_min_left=139	max_min_left_minus=139	max_min_left_plus=134	max_min_right=142	max_min_right_minus=139	max_min_right_plus=142	max_pos_hash_score=590	max_right=291	max_right_minus=291	max_right_plus=287	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	362	.	NC_000913	1962196	-1	NC_000913	1979270	-1	0	alignment_overlap=1	coverage_minus=40	coverage_plus=70	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__1962197__-1__NC_000913__1979270__-1__1____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=298	max_min_left=148	max_min_left_minus=142	max_min_left_plus=148	max_min_right=149	max_min_right_minus=149	max_min_right_plus=146	max_pos_hash_score=596	max_right=294	max_right_minus=294	max_right_plus=288	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=116	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=298	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=110
JC	363	.	NC_000913	1978503	1	NC_000913	1979452	1	0	alignment_overlap=0	coverage_minus=70	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1978503__1__NC_000913__1979452__1__0____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=275	max_min_left=149	max_min_left_minus=149	max_min_left_plus=139	max_min_right=139	max_min_right_minus=139	max_min_right_plus=131	max_pos_hash_score=598	max_right=296	max_right_minus=293	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=108	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=108
JC	364	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.960e-02	junction_possible_overlap_registers=274	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=181	max_left_minus=181	max_left_plus=181	max_min_left=82	max_min_left_minus=82	max_min_left_plus=78	max_min_right=123	max_min_right_minus=94	max_min_right_plus=123	max_pos_hash_score=548	max_right=193	max_right_minus=189	max_right_plus=193	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=9.960e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=25	side_1_possible_overlap_registers=299	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=6
JC	365	.	NC_000913	2878003	-1	NC_000913	2878372	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.493e-02	junction_possible_overlap_registers=297	key=NC_000913__2878003__-1__NC_000913__2878370__1__2____300__300__0__0	max_left=97	max_left_minus=97	max_left_plus=70	max_min_left=97	max_min_left_minus=97	max_min_left_plus=70	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=594	max_right=229	max_right_minus=228	max_right_plus=229	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.493e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=2	side_1_possible_overlap_registers=299	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=297	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=4
JC	366	.	NC_000913	3096673	-1	NC_000913	3130146	1	0	alignment_overlap=1	coverage_minus=43	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__3096674__-1__NC_000913__3130146__1__1____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=287	max_min_left=139	max_min_left_minus=139	max_min_left_plus=139	max_min_right=145	max_min_right_minus=145	max_min_right_plus=113	max_pos_hash_score=596	max_right=293	max_right_minus=293	max_right_plus=288	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=298	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=96
JC	367	.	NC_000913	3269938	-1	NC_000913	3270266	1	0	alignment_overlap=22	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=3.297e-02	junction_possible_overlap_registers=277	key=NC_000913__3269938__-1__NC_000913__3270244__1__22____300__300__0__0	max_left=138	max_left_minus=0	max_left_plus=138	max_min_left=138	max_min_left_minus=0	max_min_left_plus=138	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=554	max_right=228	max_right_minus=0	max_right_plus=228	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.297e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=22	side_1_possible_overlap_registers=299	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	368	.	NC_000913	3469019	-1	NC_000913	3469323	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.508e-02	junction_possible_overlap_registers=297	key=NC_000913__3469019__-1__NC_000913__3469321__1__2____300__300__0__0	max_left=147	max_left_minus=147	max_left_plus=113	max_min_left=147	max_min_left_minus=147	max_min_left_plus=113	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=594	max_right=219	max_right_minus=151	max_right_plus=219	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.508e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=2	side_1_possible_overlap_registers=299	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=297	side_2_read_count=121	side_2_redundant=0	total_non_overlap_reads=3
JC	369	.	NC_000913	3469040	-1	NC_000913	3469344	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.561e-02	junction_possible_overlap_registers=279	key=NC_000913__3469040__-1__NC_000913__3469324__1__20____300__300__0__0	max_left=200	max_left_minus=200	max_left_plus=183	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=102	max_min_right_minus=95	max_min_right_plus=102	max_pos_hash_score=558	max_right=102	max_right_minus=95	max_right_plus=102	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.561e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=20	side_1_possible_overlap_registers=299	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=4
JC	370	.	NC_000913	3652036	1	NC_000913	3889127	-1	0	alignment_overlap=0	coverage_minus=53	coverage_plus=77	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__3652036__1__NC_000913__3889127__-1__0____300__300__1__0	max_left=294	max_left_minus=273	max_left_plus=294	max_min_left=146	max_min_left_minus=132	max_min_left_plus=146	max_min_right=150	max_min_right_minus=138	max_min_right_plus=150	max_pos_hash_score=598	max_right=298	max_right_minus=298	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.34	new_junction_read_count=133	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=130
JC	371	.	NC_000913	3653230	-1	NC_000913	3889124	1	0	alignment_overlap=0	coverage_minus=68	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__3653230__-1__NC_000913__3889124__1__0____300__300__1__0	max_left=299	max_left_minus=289	max_left_plus=299	max_min_left=146	max_min_left_minus=146	max_min_left_plus=145	max_min_right=150	max_min_right_minus=149	max_min_right_plus=150	max_pos_hash_score=598	max_right=297	max_right_minus=297	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=114	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=112
JC	372	.	NC_000913	3815858	-1	NC_000913	3815941	1	0	alignment_overlap=10	coverage_minus=50	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__3815858__-1__NC_000913__3815931__1__10____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=278	max_min_left=144	max_min_left_minus=144	max_min_left_plus=121	max_min_right=143	max_min_right_minus=137	max_min_right_plus=143	max_pos_hash_score=578	max_right=289	max_right_minus=249	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=108
JC	373	.	NC_000913	4094350	-1	NC_000913	4094719	1	0	alignment_overlap=41	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.491e-02	junction_possible_overlap_registers=258	key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0	max_left=256	max_left_minus=256	max_left_plus=250	max_min_left=99	max_min_left_minus=0	max_min_left_plus=99	max_min_right=102	max_min_right_minus=65	max_min_right_plus=102	max_pos_hash_score=516	max_right=156	max_right_minus=65	max_right_plus=156	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=9.491e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=41	side_1_possible_overlap_registers=299	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=258	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=6
JC	374	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=6	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.004e-01	junction_possible_overlap_registers=290	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=284	max_left_minus=284	max_left_plus=283	max_min_left=141	max_min_left_minus=141	max_min_left_plus=127	max_min_right=96	max_min_right_minus=96	max_min_right_plus=48	max_pos_hash_score=580	max_right=281	max_right_minus=160	max_right_plus=281	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.16	new_junction_read_count=15	polymorphism_frequency=1.004e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.43	side_1_overlap=9	side_1_possible_overlap_registers=299	side_1_read_count=142	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.36	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=131	side_2_redundant=0	total_non_overlap_reads=14
JC	375	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=8	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.050e-02	junction_possible_overlap_registers=290	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=275	max_left_minus=275	max_left_plus=241	max_min_left=139	max_min_left_minus=139	max_min_left_plus=71	max_min_right=145	max_min_right_minus=145	max_min_right_plus=88	max_pos_hash_score=580	max_right=220	max_right_minus=203	max_right_plus=220	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.11	new_junction_read_count=11	polymorphism_frequency=7.050e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.65	side_1_overlap=9	side_1_possible_overlap_registers=299	side_1_read_count=164	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.36	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=131	side_2_redundant=0	total_non_overlap_reads=11
JC	376	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=6	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.396e-01	junction_possible_overlap_registers=210	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=199	max_left_minus=199	max_left_plus=161	max_min_left=75	max_min_left_minus=75	max_min_left_plus=28	max_min_right=86	max_min_right_minus=77	max_min_right_plus=86	max_pos_hash_score=420	max_right=183	max_right_minus=179	max_right_plus=183	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.14	new_junction_read_count=10	polymorphism_frequency=1.396e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=89	side_1_possible_overlap_registers=299	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=10
UN	377	.	NC_000913	15644	16492
UN	378	.	NC_000913	20081	20285
UN	379	.	NC_000913	224010	224509
UN	380	.	NC_000913	225164	225323
UN	381	.	NC_000913	227274	228411
UN	382	.	NC_000913	257908	258683
UN	383	.	NC_000913	270794	270794
UN	384	.	NC_000913	270800	270800
UN	385	.	NC_000913	270803	271006
UN	386	.	NC_000913	271011	271011
UN	387	.	NC_000913	271020	271020
UN	388	.	NC_000913	274235	274862
UN	389	.	NC_000913	279448	279681
UN	390	.	NC_000913	290919	291128
UN	391	.	NC_000913	315509	315509
UN	392	.	NC_000913	315513	316219
UN	393	.	NC_000913	381526	381526
UN	394	.	NC_000913	381530	381530
UN	395	.	NC_000913	381534	382329
UN	396	.	NC_000913	391980	391981
UN	397	.	NC_000913	391984	392689
UN	398	.	NC_000913	392694	392694
UN	399	.	NC_000913	392699	392699
UN	400	.	NC_000913	392706	392706
UN	401	.	NC_000913	392709	392709
UN	402	.	NC_000913	526122	526463
UN	403	.	NC_000913	526469	526469
UN	404	.	NC_000913	526472	526472
UN	405	.	NC_000913	526474	526474
UN	406	.	NC_000913	526476	526476
UN	407	.	NC_000913	526478	526478
UN	408	.	NC_000913	526480	526481
UN	409	.	NC_000913	526484	526484
UN	410	.	NC_000913	566414	566414
UN	411	.	NC_000913	567034	567034
UN	412	.	NC_000913	567049	567050
UN	413	.	NC_000913	567054	567770
UN	414	.	NC_000913	574868	575507
UN	415	.	NC_000913	575509	575509
UN	416	.	NC_000913	581572	581572
UN	417	.	NC_000913	581575	581575
UN	418	.	NC_000913	608278	609079
UN	419	.	NC_000913	609081	609081
UN	420	.	NC_000913	674957	688759
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UN	422	.	NC_000913	1095227	1095228
UN	423	.	NC_000913	1095230	1095230
UN	424	.	NC_000913	1095232	1095232
UN	425	.	NC_000913	1196374	1211413
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UN	429	.	NC_000913	1468168	1468168
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UN	431	.	NC_000913	1468180	1468962
UN	432	.	NC_000913	1468964	1468965
UN	433	.	NC_000913	1468967	1468967
UN	434	.	NC_000913	1469546	1470229
UN	435	.	NC_000913	1470231	1470233
UN	436	.	NC_000913	1528529	1528529
UN	437	.	NC_000913	1528536	1528537
UN	438	.	NC_000913	1528542	1528542
UN	439	.	NC_000913	1528552	1528902
UN	440	.	NC_000913	1528904	1528905
UN	441	.	NC_000913	1528912	1528912
UN	442	.	NC_000913	1528919	1528919
UN	443	.	NC_000913	1528922	1528922
UN	444	.	NC_000913	1528925	1528925
UN	445	.	NC_000913	1528935	1528935
UN	446	.	NC_000913	1651113	1651271
UN	447	.	NC_000913	1651274	1651274
UN	448	.	NC_000913	1651276	1651276
UN	449	.	NC_000913	1962197	1979451
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UN	451	.	NC_000913	2069196	2070020
UN	452	.	NC_000913	2102012	2102658
UN	453	.	NC_000913	2170428	2170428
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UN	457	.	NC_000913	2514538	2514541
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UN	459	.	NC_000913	2726328	2729006
UN	460	.	NC_000913	2729843	2730705
UN	461	.	NC_000913	2996601	2997438
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UN	463	.	NC_000913	3186362	3186362
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UN	467	.	NC_000913	3423930	3423931
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UN	471	.	NC_000913	3427211	3427211
UN	472	.	NC_000913	3427216	3428279
UN	473	.	NC_000913	3583715	3583912
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UN	476	.	NC_000913	3583923	3583924
UN	477	.	NC_000913	3619548	3620801
UN	478	.	NC_000913	3621351	3621351
UN	479	.	NC_000913	3621358	3622033
UN	480	.	NC_000913	3652316	3652953
UN	481	.	NC_000913	3762530	3762531
UN	482	.	NC_000913	3762533	3762533
UN	483	.	NC_000913	3762536	3762536
UN	484	.	NC_000913	3762539	3763792
UN	485	.	NC_000913	3764338	3765031
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UN	487	.	NC_000913	3765037	3765037
UN	488	.	NC_000913	3765041	3765042
UN	489	.	NC_000913	3765045	3765045
UN	490	.	NC_000913	3815859	3815940
UN	491	.	NC_000913	3942320	3943135
UN	492	.	NC_000913	3944343	3944343
UN	493	.	NC_000913	3944346	3945294
UN	494	.	NC_000913	4035432	4036810
UN	495	.	NC_000913	4036820	4036820
UN	496	.	NC_000913	4038106	4038421
UN	497	.	NC_000913	4038994	4038994
UN	498	.	NC_000913	4038998	4039111
UN	499	.	NC_000913	4039648	4039648
UN	500	.	NC_000913	4039655	4040329
UN	501	.	NC_000913	4166561	4166564
UN	502	.	NC_000913	4166923	4167937
UN	503	.	NC_000913	4168848	4171379
UN	504	.	NC_000913	4171415	4171415
UN	505	.	NC_000913	4176820	4176823
UN	506	.	NC_000913	4176825	4176837
UN	507	.	NC_000913	4208390	4209476
UN	508	.	NC_000913	4210287	4212846
UN	509	.	NC_000913	4498476	4499234
UN	510	.	NC_000913	4499236	4499236
UN	511	.	NC_000913	4507741	4508415