#=GENOME_DIFF	1.0
#=CREATED	17:59:22 03 Jun 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250516nextseq_run_rmdup/IH110_rmdup_R1R2_ -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH110_rmdup_R1.fastq.gz /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH110_rmdup_R2.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH110_rmdup_R1.fastq.gz
#=READSEQ	/ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/IH110_rmdup_R2.fastq.gz
#=CONVERTED-BASES	506927100
#=CONVERTED-READS	1689757
#=INPUT-BASES	506996700
#=INPUT-READS	1689989
#=MAPPED-BASES	492457938
#=MAPPED-READS	1644102
DEL	1	137,145	NC_000913	257908	776
MOB	2	146,147	NC_000913	258928	IS2	1	5
SNP	3	57	NC_000913	440202	A
SNP	4	58	NC_000913	557635	T
SNP	5	59	NC_000913	706759	A
SNP	6	60	NC_000913	708774	A
MOB	7	150,152	NC_000913	785074	IS2	1	5
MOB	8	148,149	NC_000913	949487	IS5	1	4
SNP	9	62	NC_000913	1076997	T
SNP	10	63	NC_000913	1093264	T
MOB	11	151,155	NC_000913	1105376	IS2	-1	5
SNP	12	66	NC_000913	1171950	T
SNP	13	67	NC_000913	1196220	T
SNP	14	68	NC_000913	1196232	T
SNP	15	69	NC_000913	1196245	C
SNP	16	70	NC_000913	1196247	G
DEL	17	139,158	NC_000913	1299499	1199
MOB	18	159,160	NC_000913	1305759	IS2	-1	5
SNP	19	80	NC_000913	1337394	G
DEL	20	140,161	NC_000913	1397239	10478	mediated=IS5
SNP	21	82	NC_000913	1428387	T
MOB	22	165,166	NC_000913	1596299	IS2	1	5
SNP	23	85	NC_000913	1652331	C
MOB	24	167,168	NC_000913	1655849	IS2	-1	5
SNP	25	86	NC_000913	1738006	G
MOB	26	162,169	NC_000913	1859380	IS5	1	4
SNP	27	87	NC_000913	1876930	A
SNP	28	88	NC_000913	1876942	C
SNP	29	89	NC_000913	1881105	A
SNP	30	92	NC_000913	2032423	A
SNP	31	93	NC_000913	2043522	A
DEL	32	96,97	NC_000913	2173363	2
MOB	33	173,176	NC_000913	2317455	IS2	-1	5
MOB	34	170,171	NC_000913	2406780	IS1	-1	8
DEL	35	142,180	NC_000913	2558699	6790
MOB	36	174,182	NC_000913	2771973	IS2	1	5
SNP	37	107	NC_000913	2867455	A
MOB	38	175,185	NC_000913	2993579	IS5	1	4
SNP	39	110	NC_000913	3036972	T
SNP	40	113	NC_000913	3090656	G
MOB	41	186,187	NC_000913	3368586	IS2	1	5
SNP	42	115	NC_000913	3486205	A
INS	43	116	NC_000913	3560455	G
SNP	44	119	NC_000913	3803378	T
SNP	45	120	NC_000913	3803540	T
SNP	46	123	NC_000913	3948012	T
SNP	47	125	NC_000913	4029259	A
SNP	48	127	NC_000913	4080436	A
SNP	49	129	NC_000913	4200353	T
INS	50	133,134	NC_000913	4296381	GC
SNP	51	136	NC_000913	4567746	T
RA	52	.	NC_000913	12152	0	G	T	bias_e_value=0.0924319	bias_p_value=1.99136e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.5	fisher_strand_p_value=9.12862e-10	frequency=2.901e-01	ks_quality_p_value=1	major_base=G	major_cov=47/46	major_frequency=7.099e-01	minor_base=T	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.901e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=47/46	total_cov=47/84
RA	53	.	NC_000913	186117	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.9	fisher_strand_p_value=1	frequency=7.000e-01	ks_quality_p_value=1	major_base=A	major_cov=36/41	major_frequency=7.000e-01	minor_base=G	minor_cov=15/18	new_cov=36/41	polymorphism_frequency=7.000e-01	polymorphism_score=94.7	prediction=polymorphism	ref_cov=15/18	total_cov=52/59
RA	54	.	NC_000913	186408	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.4	fisher_strand_p_value=1	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=24/36	major_frequency=7.143e-01	minor_base=T	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=2.857e-01	polymorphism_score=68.5	prediction=polymorphism	ref_cov=24/36	total_cov=34/50
RA	55	.	NC_000913	225579	0	C	A	bias_e_value=11.8749	bias_p_value=2.55833e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.6	fisher_strand_p_value=1.53276e-07	frequency=2.439e-01	ks_quality_p_value=1	major_base=C	major_cov=49/44	major_frequency=7.561e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.439e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=49/44	total_cov=79/44
RA	56	.	NC_000913	430299	0	C	A	bias_e_value=111.487	bias_p_value=2.40189e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.2	fisher_strand_p_value=1.68003e-06	frequency=2.917e-01	ks_quality_p_value=1	major_base=C	major_cov=36/32	major_frequency=7.083e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.917e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=36/32	total_cov=64/33
RA	57	.	NC_000913	440202	0	T	A	consensus_score=296.0	frequency=1	major_base=A	major_cov=41/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	58	.	NC_000913	557635	0	A	T	consensus_score=288.7	frequency=1	major_base=T	major_cov=50/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/27
RA	59	.	NC_000913	706759	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=330.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/55	major_frequency=9.890e-01	minor_base=C	minor_cov=0/1	new_cov=35/55	polymorphism_frequency=9.890e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=35/56
RA	60	.	NC_000913	708774	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=406.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=77/38	major_frequency=9.914e-01	minor_base=C	minor_cov=1/0	new_cov=77/38	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/38
RA	61	.	NC_000913	847955	0	G	A	bias_e_value=0.000604825	bias_p_value=1.30304e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.9	fisher_strand_p_value=4.81552e-12	frequency=2.727e-01	ks_quality_p_value=1	major_base=G	major_cov=57/31	major_frequency=7.273e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.727e-01	polymorphism_score=36.8	prediction=polymorphism	ref_cov=57/31	total_cov=57/64
RA	62	.	NC_000913	1076997	0	C	T	consensus_score=279.6	frequency=1	major_base=T	major_cov=43/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
RA	63	.	NC_000913	1093264	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=574.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=74/82	major_frequency=9.936e-01	minor_base=G	minor_cov=0/1	new_cov=74/82	polymorphism_frequency=9.936e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/83
RA	64	.	NC_000913	1097118	0	C	A	bias_e_value=289487	bias_p_value=0.0623672	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.4	fisher_strand_p_value=0.0113915	frequency=2.963e-01	ks_quality_p_value=1	major_base=C	major_cov=2/17	major_frequency=7.037e-01	minor_base=A	minor_cov=5/3	new_cov=5/3	polymorphism_frequency=2.963e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=2/17	total_cov=7/20
RA	65	.	NC_000913	1097158	0	C	T	bias_e_value=16893.4	bias_p_value=0.00363953	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.6	fisher_strand_p_value=0.000414079	frequency=4.333e-01	ks_quality_p_value=1	major_base=C	major_cov=1/16	major_frequency=5.667e-01	minor_base=T	minor_cov=9/4	new_cov=9/4	polymorphism_frequency=4.333e-01	polymorphism_score=31.7	prediction=polymorphism	ref_cov=1/16	total_cov=10/20
RA	66	.	NC_000913	1171950	0	C	T	bias_e_value=3909130	bias_p_value=0.842184	consensus_score=316.1	fisher_strand_p_value=0.494253	frequency=1	ks_quality_p_value=0.998931	major_base=T	major_cov=42/44	major_frequency=9.885e-01	minor_base=C	minor_cov=1/0	new_cov=42/44	polymorphism_frequency=9.885e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/0	total_cov=43/44
RA	67	.	NC_000913	1196220	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=171.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/29	major_frequency=9.821e-01	minor_base=G	minor_cov=0/1	new_cov=26/29	polymorphism_frequency=9.821e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	68	.	NC_000913	1196232	0	C	T	consensus_score=149.9	frequency=1	major_base=T	major_cov=26/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/22
RA	69	.	NC_000913	1196245	0	T	C	consensus_score=147.0	frequency=1	major_base=C	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	70	.	NC_000913	1196247	0	A	G	consensus_score=145.8	frequency=1	major_base=G	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	71	.	NC_000913	1196277	0	C	T	consensus_score=104.9	deleted=1	frequency=1	major_base=T	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	72	.	NC_000913	1196280	0	G	C	consensus_score=100.0	deleted=1	frequency=1	major_base=C	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	73	.	NC_000913	1196283	0	A	G	consensus_score=104.2	deleted=1	frequency=1	major_base=G	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	74	.	NC_000913	1196292	0	C	T	consensus_score=91.8	deleted=1	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	75	.	NC_000913	1196304	0	G	A	consensus_score=79.8	deleted=1	frequency=1	major_base=A	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	76	.	NC_000913	1196316	0	T	A	consensus_score=65.7	deleted=1	frequency=1	major_base=A	major_cov=17/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	77	.	NC_000913	1196325	0	A	G	consensus_score=47.4	deleted=1	frequency=1	major_base=G	major_cov=12/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/9
RA	78	.	NC_000913	1196352	0	C	A	consensus_score=29.5	deleted=1	frequency=1	major_base=A	major_cov=10/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/5
RA	79	.	NC_000913	1334966	0	A	C	bias_e_value=1.38235e-06	bias_p_value=2.97815e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=296.3	fisher_strand_p_value=8.93015e-15	frequency=2.711e-01	ks_quality_p_value=1	major_base=A	major_cov=48/73	major_frequency=7.289e-01	minor_base=C	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=2.711e-01	polymorphism_score=31.0	prediction=polymorphism	ref_cov=48/73	total_cov=93/74
RA	80	.	NC_000913	1337394	0	A	G	consensus_score=348.2	frequency=1	major_base=G	major_cov=61/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/34
RA	81	.	NC_000913	1395145	0	C	A	bias_e_value=0.845648	bias_p_value=1.82187e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.2	fisher_strand_p_value=9.34866e-09	frequency=2.642e-01	ks_quality_p_value=1	major_base=C	major_cov=33/45	major_frequency=7.358e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.642e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=33/45	total_cov=61/45
RA	82	.	NC_000913	1428387	0	G	T	consensus_score=339.9	frequency=1	major_base=T	major_cov=51/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/39
RA	83	.	NC_000913	1466432	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.0	fisher_strand_p_value=1	frequency=2.037e-01	ks_quality_p_value=1	major_base=A	major_cov=15/28	major_frequency=7.963e-01	minor_base=G	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=2.037e-01	polymorphism_score=20.7	prediction=polymorphism	ref_cov=15/28	total_cov=19/35
RA	84	.	NC_000913	1466438	0	T	G	bias_e_value=4357560	bias_p_value=0.938794	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.2	fisher_strand_p_value=0.728581	frequency=2.308e-01	ks_quality_p_value=0.921225	major_base=T	major_cov=14/26	major_frequency=7.692e-01	minor_base=G	minor_cov=3/9	new_cov=3/9	polymorphism_frequency=2.308e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=14/26	total_cov=20/35
RA	85	.	NC_000913	1652331	0	T	C	consensus_score=471.0	frequency=1	major_base=C	major_cov=64/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/55
RA	86	.	NC_000913	1738006	0	A	G	bias_e_value=3919050	bias_p_value=0.844323	consensus_score=354.5	fisher_strand_p_value=0.496768	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/51	major_frequency=9.800e-01	minor_base=T	minor_cov=0/2	new_cov=47/51	polymorphism_frequency=9.800e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	87	.	NC_000913	1876930	0	G	A	consensus_score=386.3	frequency=1	major_base=A	major_cov=50/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/55
RA	88	.	NC_000913	1876942	0	G	C	bias_e_value=2564290	bias_p_value=0.552452	consensus_score=398.7	fisher_strand_p_value=0.219567	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=47/55	major_frequency=9.808e-01	minor_base=A	minor_cov=2/0	new_cov=47/55	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	89	.	NC_000913	1881105	0	G	A	consensus_score=476.7	frequency=1	major_base=A	major_cov=49/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/76
RA	90	.	NC_000913	1902613	0	C	A	bias_e_value=4.688	bias_p_value=1.00999e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.6	fisher_strand_p_value=5.71327e-08	frequency=2.527e-01	ks_quality_p_value=1	major_base=C	major_cov=27/41	major_frequency=7.473e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.527e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=27/41	total_cov=50/41
RA	91	.	NC_000913	1922815	0	C	A	bias_e_value=12823.5	bias_p_value=0.0027627	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.8	fisher_strand_p_value=0.0003036	frequency=2.422e-01	ks_quality_p_value=1	major_base=C	major_cov=32/65	major_frequency=7.578e-01	minor_base=A	minor_cov=22/9	new_cov=22/9	polymorphism_frequency=2.422e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=32/65	total_cov=54/74
RA	92	.	NC_000913	2032423	0	G	A	consensus_score=336.3	frequency=1	major_base=A	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	93	.	NC_000913	2043522	0	C	A	consensus_score=471.3	frequency=1	major_base=A	major_cov=58/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/69
RA	94	.	NC_000913	2073613	0	G	T	bias_e_value=0.0646295	bias_p_value=1.39238e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.9	fisher_strand_p_value=6.27502e-10	frequency=3.146e-01	ks_quality_p_value=1	major_base=G	major_cov=40/21	major_frequency=6.854e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.146e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=40/21	total_cov=40/49
RA	95	.	NC_000913	2159415	0	C	G	bias_e_value=1232.28	bias_p_value=0.000265483	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.4	fisher_strand_p_value=2.27045e-05	frequency=2.885e-01	ks_quality_p_value=1	major_base=C	major_cov=14/23	major_frequency=7.115e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.885e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=14/23	total_cov=35/23
RA	96	.	NC_000913	2173363	0	C	.	bias_e_value=4638670	bias_p_value=0.999357	consensus_score=503.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964354	major_base=.	major_cov=51/45	major_frequency=9.897e-01	minor_base=C	minor_cov=1/0	new_cov=51/45	polymorphism_frequency=9.897e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/0	total_cov=52/45
RA	97	.	NC_000913	2173364	0	C	.	bias_e_value=4638670	bias_p_value=0.999357	consensus_score=503.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964354	major_base=.	major_cov=51/45	major_frequency=9.897e-01	minor_base=C	minor_cov=1/0	new_cov=51/45	polymorphism_frequency=9.897e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/0	total_cov=52/45
RA	98	.	NC_000913	2185851	0	G	T	bias_e_value=0.0913663	bias_p_value=1.9684e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.0	fisher_strand_p_value=9.01836e-10	frequency=2.463e-01	ks_quality_p_value=1	major_base=G	major_cov=56/45	major_frequency=7.537e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.463e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=56/45	total_cov=57/78
RA	99	.	NC_000913	2288418	0	G	T	bias_e_value=8.87617e-06	bias_p_value=1.91229e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=340.4	fisher_strand_p_value=6.08417e-14	frequency=2.532e-01	ks_quality_p_value=1	major_base=G	major_cov=73/45	major_frequency=7.468e-01	minor_base=T	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=2.532e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=73/45	total_cov=73/85
RA	100	.	NC_000913	2365840	0	T	G	bias_e_value=0.236144	bias_p_value=5.08749e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.5	fisher_strand_p_value=2.44235e-09	frequency=2.619e-01	ks_quality_p_value=1	major_base=T	major_cov=53/71	major_frequency=7.381e-01	minor_base=G	minor_cov=0/44	new_cov=0/44	polymorphism_frequency=2.619e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=53/71	total_cov=53/116
RA	101	.	NC_000913	2465016	0	C	A	bias_e_value=0.129993	bias_p_value=2.80057e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.2	fisher_strand_p_value=1.30521e-09	frequency=2.895e-01	ks_quality_p_value=1	major_base=C	major_cov=36/45	major_frequency=7.105e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.895e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=36/45	total_cov=69/45
RA	102	.	NC_000913	2477265	0	A	C	bias_e_value=6.10811e-12	bias_p_value=1.31593e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.3	fisher_strand_p_value=2.86069e-20	frequency=3.119e-01	ks_quality_p_value=1	major_base=A	major_cov=9/66	major_frequency=6.881e-01	minor_base=C	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.119e-01	polymorphism_score=41.2	prediction=polymorphism	ref_cov=9/66	total_cov=43/66
RA	103	.	NC_000913	2750217	0	G	A	bias_e_value=4472910	bias_p_value=0.963646	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.9	fisher_strand_p_value=0.791404	frequency=7.674e-01	ks_quality_p_value=0.938545	major_base=A	major_cov=43/23	major_frequency=7.674e-01	minor_base=G	minor_cov=12/8	new_cov=43/23	polymorphism_frequency=7.674e-01	polymorphism_score=54.8	prediction=polymorphism	ref_cov=12/8	total_cov=55/31
RA	104	.	NC_000913	2767444	0	C	A	bias_e_value=1.96115e-06	bias_p_value=4.22512e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.4	fisher_strand_p_value=1.28078e-14	frequency=3.178e-01	ks_quality_p_value=1	major_base=C	major_cov=19/54	major_frequency=6.822e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.178e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=19/54	total_cov=56/54
RA	105	.	NC_000913	2767445	0	C	A	bias_e_value=2.96379e-07	bias_p_value=6.3852e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.9	fisher_strand_p_value=1.8277e-15	frequency=3.364e-01	ks_quality_p_value=1	major_base=C	major_cov=19/54	major_frequency=6.636e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.364e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=19/54	total_cov=56/54
RA	106	.	NC_000913	2856087	0	G	T	bias_e_value=355.712	bias_p_value=7.66347e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.2	fisher_strand_p_value=5.87471e-06	frequency=2.315e-01	ks_quality_p_value=1	major_base=G	major_cov=37/46	major_frequency=7.685e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.315e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=37/46	total_cov=37/71
RA	107	.	NC_000913	2867455	0	G	A	bias_e_value=2944250	bias_p_value=0.63431	consensus_score=497.3	fisher_strand_p_value=0.278338	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=80/54	major_frequency=9.781e-01	minor_base=C	minor_cov=3/0	new_cov=80/54	polymorphism_frequency=9.781e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/54
RA	108	.	NC_000913	2990480	0	C	A	bias_e_value=1.16368e-08	bias_p_value=2.50703e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=356.3	fisher_strand_p_value=6.5519e-17	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=51/79	major_frequency=7.143e-01	minor_base=A	minor_cov=52/0	new_cov=52/0	polymorphism_frequency=2.857e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=51/79	total_cov=103/79
RA	109	.	NC_000913	3032307	0	C	T	bias_e_value=0.000985045	bias_p_value=2.12219e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.6	fisher_strand_p_value=7.99241e-12	frequency=2.883e-01	ks_quality_p_value=1	major_base=C	major_cov=27/52	major_frequency=7.117e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.883e-01	polymorphism_score=44.0	prediction=polymorphism	ref_cov=27/52	total_cov=59/52
RA	110	.	NC_000913	3036972	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=316.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/32	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=56/32	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=57/32
RA	111	.	NC_000913	3054886	0	G	T	bias_e_value=1.68759e-06	bias_p_value=3.63575e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.0	fisher_strand_p_value=1.09697e-14	frequency=3.048e-01	ks_quality_p_value=1	major_base=G	major_cov=14/59	major_frequency=6.952e-01	minor_base=T	minor_cov=31/1	new_cov=31/1	polymorphism_frequency=3.048e-01	polymorphism_score=26.1	prediction=polymorphism	ref_cov=14/59	total_cov=45/60
RA	112	.	NC_000913	3054894	0	G	T	bias_e_value=2.69375e-06	bias_p_value=5.80344e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.9	fisher_strand_p_value=1.77685e-14	frequency=2.952e-01	ks_quality_p_value=1	major_base=G	major_cov=14/60	major_frequency=7.048e-01	minor_base=T	minor_cov=30/1	new_cov=30/1	polymorphism_frequency=2.952e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=14/60	total_cov=46/61
RA	113	.	NC_000913	3090656	0	A	G	consensus_score=372.7	frequency=1	major_base=G	major_cov=42/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/52
RA	114	.	NC_000913	3368430	0	G	T	bias_e_value=1753660	bias_p_value=0.377808	consensus_reject=FREQUENCY_CUTOFF	consensus_score=264.9	fisher_strand_p_value=0.121598	frequency=2.114e-01	ks_quality_p_value=1	major_base=G	major_cov=54/43	major_frequency=7.886e-01	minor_base=T	minor_cov=19/7	new_cov=19/7	polymorphism_frequency=2.114e-01	polymorphism_score=28.4	prediction=polymorphism	ref_cov=54/43	total_cov=74/50
RA	115	.	NC_000913	3486205	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=330.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=50/43	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=50/43	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/44
RA	116	.	NC_000913	3560455	1	.	G	consensus_score=356.9	frequency=1	major_base=G	major_cov=51/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/41
RA	117	.	NC_000913	3669715	0	G	T	bias_e_value=4.81145	bias_p_value=1.03658e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.8	fisher_strand_p_value=5.87287e-08	frequency=2.966e-01	ks_quality_p_value=1	major_base=G	major_cov=38/45	major_frequency=7.034e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.966e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=38/45	total_cov=38/80
RA	118	.	NC_000913	3741871	0	G	T	bias_e_value=0.418249	bias_p_value=9.01078e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.2	fisher_strand_p_value=4.4543e-09	frequency=2.460e-01	ks_quality_p_value=1	major_base=G	major_cov=52/43	major_frequency=7.540e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.460e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=52/43	total_cov=52/74
RA	119	.	NC_000913	3803378	0	C	T	consensus_score=561.8	frequency=1	major_base=T	major_cov=92/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=92/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=92/62
RA	120	.	NC_000913	3803540	0	C	T	consensus_score=626.3	frequency=1	major_base=T	major_cov=105/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=105/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=105/65
RA	121	.	NC_000913	3896780	0	C	A	bias_e_value=7.05203e-07	bias_p_value=1.51929e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=374.9	fisher_strand_p_value=4.46287e-15	frequency=2.436e-01	ks_quality_p_value=1	major_base=C	major_cov=39/79	major_frequency=7.564e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.436e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=39/79	total_cov=77/79
RA	122	.	NC_000913	3911533	0	C	A	bias_e_value=0.0747167	bias_p_value=1.6097e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=269.1	fisher_strand_p_value=7.30441e-10	frequency=2.388e-01	ks_quality_p_value=1	major_base=C	major_cov=45/57	major_frequency=7.612e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.388e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=45/57	total_cov=77/57
RA	123	.	NC_000913	3948012	0	G	T	consensus_score=523.6	frequency=1	major_base=T	major_cov=63/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/75
RA	124	.	NC_000913	3970253	0	G	T	bias_e_value=0.0327183	bias_p_value=7.04886e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.4	fisher_strand_p_value=3.07789e-10	frequency=3.113e-01	ks_quality_p_value=1	major_base=G	major_cov=43/30	major_frequency=6.887e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=3.113e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=43/30	total_cov=44/63
RA	125	.	NC_000913	4029259	0	G	A	consensus_score=304.0	frequency=1	major_base=A	major_cov=60/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/26
RA	126	.	NC_000913	4074572	0	C	A	bias_e_value=37.7444	bias_p_value=8.13168e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.3	fisher_strand_p_value=5.26055e-07	frequency=2.222e-01	ks_quality_p_value=1	major_base=C	major_cov=40/44	major_frequency=7.778e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.222e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=40/44	total_cov=64/45
RA	127	.	NC_000913	4080436	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=358.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=50/47	major_frequency=9.898e-01	minor_base=C	minor_cov=1/0	new_cov=50/47	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/48
RA	128	.	NC_000913	4154114	0	T	G	bias_e_value=127.38	bias_p_value=2.74428e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.7	fisher_strand_p_value=1.93896e-06	frequency=2.020e-01	ks_quality_p_value=1	major_base=T	major_cov=43/36	major_frequency=7.980e-01	minor_base=G	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.020e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=43/36	total_cov=43/57
RA	129	.	NC_000913	4200353	0	C	T	consensus_score=385.0	frequency=1	major_base=T	major_cov=55/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/50
RA	130	.	NC_000913	4296190	0	A	G	bias_e_value=3287930	bias_p_value=0.708354	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.0	fisher_strand_p_value=1	frequency=2.083e-01	ks_quality_p_value=0.341447	major_base=A	major_cov=13/6	major_frequency=7.917e-01	minor_base=G	minor_cov=4/1	new_cov=4/1	polymorphism_frequency=2.083e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=13/6	total_cov=17/7
RA	131	.	NC_000913	4296191	0	A	C	bias_e_value=3340540	bias_p_value=0.719687	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.4	fisher_strand_p_value=0.352148	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=10/6	major_frequency=6.667e-01	minor_base=C	minor_cov=7/1	new_cov=7/1	polymorphism_frequency=3.333e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=10/6	total_cov=17/7
RA	132	.	NC_000913	4296268	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.5	fisher_strand_p_value=1	frequency=2.432e-01	ks_quality_p_value=1	major_base=T	major_cov=20/8	major_frequency=7.568e-01	minor_base=C	minor_cov=7/2	new_cov=7/2	polymorphism_frequency=2.432e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=20/8	total_cov=27/10
RA	133	.	NC_000913	4296380	1	.	C	bias_e_value=3940500	bias_p_value=0.848942	consensus_score=263.5	fisher_strand_p_value=0.516491	frequency=1	ks_quality_p_value=0.97472	major_base=C	major_cov=52/22	major_frequency=9.737e-01	minor_base=T	minor_cov=1/1	new_cov=52/22	polymorphism_frequency=9.737e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/0	total_cov=54/23
RA	134	.	NC_000913	4296380	2	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=285.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=53/23	major_frequency=9.870e-01	minor_base=.	minor_cov=1/0	new_cov=53/23	polymorphism_frequency=9.870e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=54/23
RA	135	.	NC_000913	4360965	0	C	A	bias_e_value=1.05388e-07	bias_p_value=2.27049e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=363.3	fisher_strand_p_value=6.30697e-16	frequency=2.484e-01	ks_quality_p_value=1	major_base=C	major_cov=35/80	major_frequency=7.516e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.484e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=35/80	total_cov=73/80
RA	136	.	NC_000913	4567746	0	A	T	consensus_score=411.4	frequency=1	major_base=T	major_cov=54/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/57
MC	137	.	NC_000913	257908	258683	768	0	left_inside_cov=0	left_outside_cov=134	right_inside_cov=14	right_outside_cov=146
MC	138	.	NC_000913	1196277	1211480	0	0	left_inside_cov=36	left_outside_cov=39	right_inside_cov=37	right_outside_cov=38
MC	139	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=134	right_inside_cov=1	right_outside_cov=135
MC	140	.	NC_000913	1396210	1407716	1033	0	left_inside_cov=36	left_outside_cov=40	right_inside_cov=0	right_outside_cov=140
MC	141	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=119	right_inside_cov=0	right_outside_cov=139
MC	142	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=91	right_inside_cov=0	right_outside_cov=92
MC	143	.	NC_000913	3423816	3424486	415	248	left_inside_cov=37	left_outside_cov=38	right_inside_cov=35	right_outside_cov=39
JC	144	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=73	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=299	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=281	max_min_left=149	max_min_left_minus=149	max_min_left_plus=146	max_min_right=148	max_min_right_minus=147	max_min_right_plus=148	max_pos_hash_score=598	max_right=295	max_right_minus=288	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.30	new_junction_read_count=139	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=137
JC	145	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=56	coverage_plus=65	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=291	max_left_minus=291	max_left_plus=288	max_min_left=145	max_min_left_minus=145	max_min_left_plus=135	max_min_right=146	max_min_right_minus=146	max_min_right_plus=144	max_pos_hash_score=582	max_right=249	max_right_minus=247	max_right_plus=249	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.28	new_junction_read_count=133	polymorphism_frequency=1.000e+00	pos_hash_score=77	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=121
JC	146	.	NC_000913	258928	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=93	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__258928__1__NC_000913__382590__-1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=296	max_min_left=141	max_min_left_minus=139	max_min_left_plus=141	max_min_right=146	max_min_right_minus=131	max_min_right_plus=146	max_pos_hash_score=598	max_right=298	max_right_minus=295	max_right_plus=298	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=129	polymorphism_frequency=1.000e+00	pos_hash_score=84	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=127
JC	147	.	NC_000913	258932	-1	NC_000913	1469240	-1	0	alignment_overlap=1	coverage_minus=38	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__258933__-1__NC_000913__1469240__-1__1____300__300__0__1	max_left=257	max_left_minus=253	max_left_plus=257	max_min_left=145	max_min_left_minus=145	max_min_left_plus=145	max_min_right=145	max_min_right_minus=145	max_min_right_plus=142	max_pos_hash_score=596	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.93	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=94
JC	148	.	NC_000913	273955	1	NC_000913	949487	1	0	alignment_overlap=1	coverage_minus=60	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__273955__1__NC_000913__949486__1__1____300__300__1__0	max_left=292	max_left_minus=274	max_left_plus=292	max_min_left=148	max_min_left_minus=140	max_min_left_plus=148	max_min_right=138	max_min_right_minus=138	max_min_right_plus=136	max_pos_hash_score=596	max_right=298	max_right_minus=298	max_right_plus=290	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=108
JC	149	.	NC_000913	275149	-1	NC_000913	949490	-1	0	alignment_overlap=0	coverage_minus=59	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__275149__-1__NC_000913__949490__-1__0____300__300__1__0	max_left=294	max_left_minus=288	max_left_plus=294	max_min_left=146	max_min_left_minus=146	max_min_left_plus=132	max_min_right=149	max_min_right_minus=149	max_min_right_plus=130	max_pos_hash_score=598	max_right=298	max_right_minus=298	max_right_plus=293	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.00	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=106
JC	150	.	NC_000913	381260	1	NC_000913	785078	-1	0	alignment_overlap=1	coverage_minus=56	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__381260__1__NC_000913__785079__-1__1____300__300__1__0	max_left=295	max_left_minus=291	max_left_plus=295	max_min_left=139	max_min_left_minus=139	max_min_left_plus=137	max_min_right=147	max_min_right_minus=147	max_min_right_plus=145	max_pos_hash_score=596	max_right=298	max_right_minus=295	max_right_plus=298	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.01	new_junction_read_count=108	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=107
JC	151	.	NC_000913	381260	1	NC_000913	1105376	1	0	alignment_overlap=1	coverage_minus=69	coverage_plus=38	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__381260__1__NC_000913__1105375__1__1____300__300__1__0	max_left=295	max_left_minus=268	max_left_plus=295	max_min_left=144	max_min_left_minus=144	max_min_left_plus=133	max_min_right=142	max_min_right_minus=142	max_min_right_plus=137	max_pos_hash_score=596	max_right=295	max_right_minus=295	max_right_plus=271	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.04	new_junction_read_count=111	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=107
JC	152	.	NC_000913	382590	-1	NC_000913	785074	1	0	alignment_overlap=0	coverage_minus=52	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__382590__-1__NC_000913__785074__1__0____300__300__1__0	max_left=297	max_left_minus=279	max_left_plus=297	max_min_left=149	max_min_left_minus=149	max_min_left_plus=143	max_min_right=144	max_min_right_minus=140	max_min_right_plus=144	max_pos_hash_score=598	max_right=299	max_right_minus=299	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.89	new_junction_read_count=95	polymorphism_frequency=9.894e-01	pos_hash_score=74	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=93
JC	153	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.153e-01	junction_possible_overlap_registers=221	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=149	max_left_minus=149	max_left_plus=101	max_min_left=101	max_min_left_minus=71	max_min_left_plus=101	max_min_right=107	max_min_right_minus=107	max_min_right_plus=0	max_pos_hash_score=442	max_right=136	max_right_minus=128	max_right_plus=136	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=1.153e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=78	side_1_possible_overlap_registers=299	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=221	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=6
JC	154	.	NC_000913	781222	-1	NC_000913	781653	1	0	alignment_overlap=76	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.035e-01	junction_possible_overlap_registers=223	key=NC_000913__781222__-1__NC_000913__781577__1__76____300__300__0__0	max_left=195	max_left_minus=195	max_left_plus=195	max_min_left=80	max_min_left_minus=11	max_min_left_plus=80	max_min_right=76	max_min_right_minus=76	max_min_right_plus=22	max_pos_hash_score=446	max_right=213	max_right_minus=213	max_right_plus=150	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.08	new_junction_read_count=6	polymorphism_frequency=1.035e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=76	side_1_possible_overlap_registers=299	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=223	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=6
JC	155	.	NC_000913	1105380	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=45	coverage_plus=82	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1105380__-1__NC_000913__1467910__1__0____300__300__0__1	max_left=296	max_left_minus=294	max_left_plus=296	max_min_left=144	max_min_left_minus=144	max_min_left_plus=141	max_min_right=150	max_min_right_minus=150	max_min_right_plus=149	max_pos_hash_score=598	max_right=296	max_right_minus=296	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=130	polymorphism_frequency=9.922e-01	pos_hash_score=85	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=127
JC	156	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.769e-02	junction_possible_overlap_registers=279	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=278	max_left_minus=278	max_left_plus=117	max_min_left=117	max_min_left_minus=72	max_min_left_plus=117	max_min_right=55	max_min_right_minus=55	max_min_right_plus=0	max_pos_hash_score=558	max_right=276	max_right_minus=205	max_right_plus=276	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=7.769e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=20	side_1_possible_overlap_registers=299	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=5
JC	157	.	NC_000913	1287262	-1	NC_000913	1287382	1	0	alignment_overlap=21	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.005e-02	junction_possible_overlap_registers=278	key=NC_000913__1287262__-1__NC_000913__1287361__1__21____300__300__0__0	max_left=63	max_left_minus=63	max_left_plus=44	max_min_left=63	max_min_left_minus=63	max_min_left_plus=44	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=556	max_right=278	max_right_minus=216	max_right_plus=278	neg_log10_pos_hash_p_value=10.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=6.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=21	side_1_possible_overlap_registers=299	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=4
JC	158	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=62	coverage_plus=70	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=285	max_left_plus=294	max_min_left=144	max_min_left_minus=139	max_min_left_plus=144	max_min_right=143	max_min_right_minus=143	max_min_right_plus=140	max_pos_hash_score=590	max_right=295	max_right_minus=285	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.27	new_junction_read_count=134	polymorphism_frequency=1.000e+00	pos_hash_score=88	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=132
JC	159	.	NC_000913	1305759	1	NC_000913	1469240	-1	0	alignment_overlap=1	coverage_minus=48	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__1305758__1__NC_000913__1469240__-1__1____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=295	max_min_left=149	max_min_left_minus=149	max_min_left_plus=145	max_min_right=146	max_min_right_minus=145	max_min_right_plus=146	max_pos_hash_score=596	max_right=296	max_right_minus=296	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=113	polymorphism_frequency=1.000e+00	pos_hash_score=77	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=110
JC	160	.	NC_000913	1305763	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=40	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1305763__-1__NC_000913__1467910__1__0____300__300__0__1	max_left=299	max_left_minus=296	max_left_plus=299	max_min_left=144	max_min_left_minus=144	max_min_left_plus=141	max_min_right=142	max_min_right_minus=142	max_min_right_plus=142	max_pos_hash_score=598	max_right=298	max_right_minus=297	max_right_plus=298	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=99	polymorphism_frequency=9.898e-01	pos_hash_score=69	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=96
JC	161	.	NC_000913	1397238	-1	NC_000913	1407717	1	0	alignment_overlap=0	coverage_minus=66	coverage_plus=71	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1397238__-1__NC_000913__1407717__1__0____300__300__1__0	max_left=295	max_left_minus=285	max_left_plus=295	max_min_left=146	max_min_left_minus=133	max_min_left_plus=146	max_min_right=148	max_min_right_minus=148	max_min_right_plus=145	max_pos_hash_score=598	max_right=298	max_right_minus=298	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.31	new_junction_read_count=140	polymorphism_frequency=1.000e+00	pos_hash_score=92	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=137
JC	162	.	NC_000913	1397238	-1	NC_000913	1859380	1	0	alignment_overlap=0	coverage_minus=36	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1397238__-1__NC_000913__1859380__1__0____300__300__1__0	max_left=294	max_left_minus=284	max_left_plus=294	max_min_left=149	max_min_left_minus=141	max_min_left_plus=149	max_min_right=145	max_min_right_minus=133	max_min_right_plus=145	max_pos_hash_score=598	max_right=299	max_right_minus=297	max_right_plus=299	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.91	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=95
JC	163	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=60	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=294	max_min_left=143	max_min_left_minus=140	max_min_left_plus=143	max_min_right=149	max_min_right_minus=135	max_min_right_plus=149	max_pos_hash_score=598	max_right=297	max_right_minus=297	max_right_plus=285	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=118	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=116
JC	164	.	NC_000913	1411899	1	NC_000913	1434958	-1	0	alignment_overlap=26	coverage_minus=8	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.177e-01	junction_possible_overlap_registers=273	key=NC_000913__1411899__1__NC_000913__1434984__-1__26____300__300__0__0	max_left=265	max_left_minus=265	max_left_plus=187	max_min_left=109	max_min_left_minus=109	max_min_left_plus=82	max_min_right=104	max_min_right_minus=79	max_min_right_plus=104	max_pos_hash_score=546	max_right=255	max_right_minus=244	max_right_plus=255	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=16	polymorphism_frequency=1.177e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=26	side_1_possible_overlap_registers=299	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=16
JC	165	.	NC_000913	1467910	1	NC_000913	1596299	1	0	alignment_overlap=0	coverage_minus=57	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1467910__1__NC_000913__1596299__1__0____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=284	max_min_left=144	max_min_left_minus=142	max_min_left_plus=144	max_min_right=140	max_min_right_minus=140	max_min_right_plus=124	max_pos_hash_score=598	max_right=299	max_right_minus=294	max_right_plus=299	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.87	new_junction_read_count=93	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=92
JC	166	.	NC_000913	1469240	-1	NC_000913	1596303	-1	0	alignment_overlap=0	coverage_minus=69	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1469240__-1__NC_000913__1596303__-1__0____300__300__1__0	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=142	max_min_left_minus=142	max_min_left_plus=136	max_min_right=147	max_min_right_minus=147	max_min_right_plus=137	max_pos_hash_score=598	max_right=299	max_right_minus=299	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=119	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=114
JC	167	.	NC_000913	1469240	-1	NC_000913	1655849	1	0	alignment_overlap=0	coverage_minus=53	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1469240__-1__NC_000913__1655849__1__0____300__300__1__0	max_left=297	max_left_minus=292	max_left_plus=297	max_min_left=147	max_min_left_minus=147	max_min_left_plus=146	max_min_right=143	max_min_right_minus=139	max_min_right_plus=143	max_pos_hash_score=598	max_right=295	max_right_minus=295	max_right_plus=272	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.91	new_junction_read_count=97	polymorphism_frequency=9.896e-01	pos_hash_score=76	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=94
JC	168	.	NC_000913	1651548	-1	NC_000913	1655853	-1	0	alignment_overlap=2	coverage_minus=49	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=297	key=NC_000913__1651548__-1__NC_000913__1655855__-1__2____300__300__1__0	max_left=289	max_left_minus=269	max_left_plus=289	max_min_left=145	max_min_left_minus=126	max_min_left_plus=145	max_min_right=142	max_min_right_minus=141	max_min_right_plus=142	max_pos_hash_score=594	max_right=285	max_right_minus=265	max_right_plus=285	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.88	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=92
JC	169	.	NC_000913	1859383	-1	NC_000913	2102943	-1	0	alignment_overlap=0	coverage_minus=61	coverage_plus=76	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1859383__-1__NC_000913__2102943__-1__0____300__300__0__1	max_left=296	max_left_minus=295	max_left_plus=296	max_min_left=149	max_min_left_minus=149	max_min_left_plus=144	max_min_right=146	max_min_right_minus=143	max_min_right_plus=146	max_pos_hash_score=598	max_right=294	max_right_minus=292	max_right_plus=294	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.32	new_junction_read_count=141	polymorphism_frequency=1.000e+00	pos_hash_score=91	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=137
JC	170	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=59	coverage_plus=54	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____300__300__1__0	max_left=289	max_left_minus=285	max_left_plus=289	max_min_left=148	max_min_left_minus=148	max_min_left_plus=147	max_min_right=139	max_min_right_minus=139	max_min_right_plus=137	max_pos_hash_score=596	max_right=297	max_right_minus=281	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=116	polymorphism_frequency=1.000e+00	pos_hash_score=77	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=113
JC	171	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=57	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____300__300__1__0	max_left=284	max_left_minus=284	max_left_plus=281	max_min_left=149	max_min_left_minus=147	max_min_left_plus=149	max_min_right=147	max_min_right_minus=147	max_min_right_plus=146	max_pos_hash_score=598	max_right=292	max_right_minus=283	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.08	new_junction_read_count=116	polymorphism_frequency=1.000e+00	pos_hash_score=83	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=113
JC	172	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=50	coverage_plus=87	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=299	max_left_minus=294	max_left_plus=299	max_min_left=145	max_min_left_minus=143	max_min_left_plus=145	max_min_right=150	max_min_right_minus=145	max_min_right_plus=150	max_pos_hash_score=598	max_right=297	max_right_minus=297	max_right_plus=292	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.30	new_junction_read_count=139	polymorphism_frequency=1.000e+00	pos_hash_score=88	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=137
JC	173	.	NC_000913	2068941	1	NC_000913	2317459	-1	0	alignment_overlap=1	coverage_minus=62	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__2068941__1__NC_000913__2317460__-1__1____300__300__1__0	max_left=297	max_left_minus=297	max_left_plus=284	max_min_left=141	max_min_left_minus=141	max_min_left_plus=130	max_min_right=141	max_min_right_minus=140	max_min_right_plus=141	max_pos_hash_score=596	max_right=297	max_right_minus=297	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.01	new_junction_read_count=108	polymorphism_frequency=1.000e+00	pos_hash_score=84	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=107
JC	174	.	NC_000913	2070271	-1	NC_000913	2771977	-1	0	alignment_overlap=0	coverage_minus=94	coverage_plus=46	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2070271__-1__NC_000913__2771977__-1__0____300__300__1__0	max_left=297	max_left_minus=297	max_left_plus=297	max_min_left=145	max_min_left_minus=145	max_min_left_plus=145	max_min_right=149	max_min_right_minus=142	max_min_right_plus=149	max_pos_hash_score=598	max_right=299	max_right_minus=299	max_right_plus=291	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.34	new_junction_read_count=143	polymorphism_frequency=1.000e+00	pos_hash_score=93	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=140
JC	175	.	NC_000913	2288919	1	NC_000913	2993579	1	0	alignment_overlap=0	coverage_minus=71	coverage_plus=79	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2288919__1__NC_000913__2993579__1__0____300__300__1__0	max_left=294	max_left_minus=285	max_left_plus=294	max_min_left=148	max_min_left_minus=139	max_min_left_plus=148	max_min_right=149	max_min_right_minus=135	max_min_right_plus=149	max_pos_hash_score=598	max_right=297	max_right_minus=297	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.45	new_junction_read_count=155	polymorphism_frequency=1.000e+00	pos_hash_score=96	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=150
JC	176	.	NC_000913	2317455	1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=40	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2317455__1__NC_000913__2997691__-1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=295	max_min_left=149	max_min_left_minus=149	max_min_left_plus=146	max_min_right=147	max_min_right_minus=134	max_min_right_plus=147	max_pos_hash_score=598	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.78	new_junction_read_count=83	polymorphism_frequency=9.879e-01	pos_hash_score=55	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=81
JC	177	.	NC_000913	2375828	1	NC_000913	2515617	-1	0	alignment_overlap=4	coverage_minus=40	coverage_plus=26	flanking_left=300	flanking_right=300	frequency=7.816e-01	junction_possible_overlap_registers=295	key=NC_000913__2375824__1__NC_000913__2515617__-1__4____300__300__0__1	max_left=295	max_left_minus=295	max_left_plus=262	max_min_left=138	max_min_left_minus=138	max_min_left_plus=92	max_min_right=143	max_min_right_minus=134	max_min_right_plus=143	max_pos_hash_score=590	max_right=285	max_right_minus=285	max_right_plus=277	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.64	new_junction_read_count=68	polymorphism_frequency=7.816e-01	pos_hash_score=51	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=19	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=4	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=66
JC	178	.	NC_000913	2375831	-1	NC_000913	2514273	1	0	alignment_overlap=4	coverage_minus=20	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=7.470e-01	junction_possible_overlap_registers=295	key=NC_000913__2375835__-1__NC_000913__2514273__1__4____300__300__0__1	max_left=295	max_left_minus=295	max_left_plus=295	max_min_left=146	max_min_left_minus=144	max_min_left_plus=146	max_min_right=126	max_min_right_minus=126	max_min_right_plus=122	max_pos_hash_score=590	max_right=294	max_right_minus=294	max_right_plus=293	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.59	new_junction_read_count=62	polymorphism_frequency=7.470e-01	pos_hash_score=47	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.20	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=4	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=60
JC	179	.	NC_000913	2521006	-1	NC_000913	2521127	1	0	alignment_overlap=76	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.524e-02	junction_possible_overlap_registers=223	key=NC_000913__2521006__-1__NC_000913__2521051__1__76____300__300__0__0	max_left=179	max_left_minus=166	max_left_plus=179	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=82	max_min_right_minus=58	max_min_right_plus=82	max_pos_hash_score=446	max_right=82	max_right_minus=58	max_right_plus=82	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.524e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=76	side_1_possible_overlap_registers=299	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=223	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=3
JC	180	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=36	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=286	max_left_minus=269	max_left_plus=286	max_min_left=143	max_min_left_minus=143	max_min_left_plus=141	max_min_right=146	max_min_right_minus=109	max_min_right_plus=146	max_pos_hash_score=582	max_right=285	max_right_minus=274	max_right_plus=285	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.87	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=87
JC	181	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=4	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.142e-01	junction_possible_overlap_registers=274	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=212	max_left_minus=212	max_left_plus=166	max_min_left=116	max_min_left_minus=116	max_min_left_plus=60	max_min_right=130	max_min_right_minus=130	max_min_right_plus=106	max_pos_hash_score=548	max_right=269	max_right_minus=159	max_right_plus=269	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.12	new_junction_read_count=12	polymorphism_frequency=1.142e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=25	side_1_possible_overlap_registers=299	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=12
JC	182	.	NC_000913	2771973	1	NC_000913	2996361	1	0	alignment_overlap=0	coverage_minus=52	coverage_plus=61	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2771973__1__NC_000913__2996361__1__0____300__300__0__1	max_left=295	max_left_minus=287	max_left_plus=295	max_min_left=148	max_min_left_minus=148	max_min_left_plus=146	max_min_right=148	max_min_right_minus=148	max_min_right_plus=139	max_pos_hash_score=598	max_right=297	max_right_minus=297	max_right_plus=276	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.08	new_junction_read_count=116	polymorphism_frequency=1.000e+00	pos_hash_score=81	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=113
JC	183	.	NC_000913	2877912	-1	NC_000913	2878281	1	0	alignment_overlap=29	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.876e-02	junction_possible_overlap_registers=270	key=NC_000913__2877912__-1__NC_000913__2878252__1__29____300__300__0__0	max_left=181	max_left_minus=181	max_left_plus=129	max_min_left=129	max_min_left_minus=4	max_min_left_plus=129	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=540	max_right=267	max_right_minus=267	max_right_plus=138	neg_log10_pos_hash_p_value=9.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.876e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=29	side_1_possible_overlap_registers=299	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=91	side_2_redundant=0	total_non_overlap_reads=3
JC	184	.	NC_000913	2878156	-1	NC_000913	2878464	1	0	alignment_overlap=29	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.428e-02	junction_possible_overlap_registers=270	key=NC_000913__2878156__-1__NC_000913__2878435__1__29____300__300__0__0	max_left=203	max_left_minus=203	max_left_plus=132	max_min_left=132	max_min_left_minus=0	max_min_left_plus=132	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=540	max_right=217	max_right_minus=68	max_right_plus=217	neg_log10_pos_hash_p_value=9.9	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.428e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=29	side_1_possible_overlap_registers=299	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.41	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=136	side_2_redundant=0	total_non_overlap_reads=3
JC	185	.	NC_000913	2993582	-1	NC_000913	3130146	1	0	alignment_overlap=0	coverage_minus=35	coverage_plus=106	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2993582__-1__NC_000913__3130146__1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=298	max_min_left=139	max_min_left_minus=112	max_min_left_plus=139	max_min_right=146	max_min_right_minus=139	max_min_right_plus=146	max_pos_hash_score=598	max_right=294	max_right_minus=294	max_right_plus=288	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.37	new_junction_read_count=147	polymorphism_frequency=1.000e+00	pos_hash_score=81	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=141
JC	186	.	NC_000913	2996361	1	NC_000913	3368586	1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2996361__1__NC_000913__3368586__1__0____300__300__1__0	max_left=291	max_left_minus=286	max_left_plus=291	max_min_left=147	max_min_left_minus=147	max_min_left_plus=145	max_min_right=141	max_min_right_minus=141	max_min_right_plus=140	max_pos_hash_score=598	max_right=297	max_right_minus=275	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.04	new_junction_read_count=111	polymorphism_frequency=1.000e+00	pos_hash_score=79	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=108
JC	187	.	NC_000913	3186096	1	NC_000913	3368590	-1	0	alignment_overlap=0	coverage_minus=78	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__3186096__1__NC_000913__3368590__-1__0____300__300__1__0	max_left=298	max_left_minus=298	max_left_plus=296	max_min_left=149	max_min_left_minus=137	max_min_left_plus=149	max_min_right=148	max_min_right_minus=148	max_min_right_plus=144	max_pos_hash_score=598	max_right=295	max_right_minus=295	max_right_plus=283	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=124	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=123
JC	188	.	NC_000913	3469049	-1	NC_000913	3469353	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.910e-02	junction_possible_overlap_registers=291	key=NC_000913__3469049__-1__NC_000913__3469345__1__8____300__300__0__0	max_left=234	max_left_minus=156	max_left_plus=234	max_min_left=105	max_min_left_minus=66	max_min_left_plus=105	max_min_right=136	max_min_right_minus=136	max_min_right_plus=58	max_pos_hash_score=582	max_right=226	max_right_minus=226	max_right_plus=187	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.910e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=4
JC	189	.	NC_000913	3648146	-1	NC_000913	3648378	1	0	alignment_overlap=58	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.896e-02	junction_possible_overlap_registers=241	key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0	max_left=234	max_left_minus=234	max_left_plus=183	max_min_left=100	max_min_left_minus=100	max_min_left_plus=100	max_min_right=59	max_min_right_minus=8	max_min_right_plus=59	max_pos_hash_score=482	max_right=142	max_right_minus=142	max_right_plus=142	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.896e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=58	side_1_possible_overlap_registers=299	side_1_read_count=122	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=4
JC	190	.	NC_000913	3720633	1	NC_000913	3762460	1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=299	key=NC_000913__3720633__1__NC_000913__3762460__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=296	max_min_left=147	max_min_left_minus=147	max_min_left_plus=123	max_min_right=145	max_min_right_minus=142	max_min_right_plus=145	max_pos_hash_score=598	max_right=295	max_right_minus=295	max_right_plus=295	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.93	new_junction_read_count=100	polymorphism_frequency=NA	pos_hash_score=65	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=98
JC	191	.	NC_000913	3722075	-1	NC_000913	3762462	-1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=63	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__3722075__-1__NC_000913__3762462__-1__0____300__300__0__0	max_left=298	max_left_minus=298	max_left_plus=296	max_min_left=146	max_min_left_minus=111	max_min_left_plus=146	max_min_right=146	max_min_right_minus=146	max_min_right_plus=136	max_pos_hash_score=598	max_right=295	max_right_minus=295	max_right_plus=288	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.94	new_junction_read_count=101	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=100
JC	192	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=5	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=9.248e-02	junction_possible_overlap_registers=290	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=243	max_min_left=132	max_min_left_minus=13	max_min_left_plus=132	max_min_right=86	max_min_right_minus=81	max_min_right_plus=86	max_pos_hash_score=580	max_right=278	max_right_minus=278	max_right_plus=229	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.15	new_junction_read_count=16	polymorphism_frequency=9.248e-02	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.55	side_1_overlap=9	side_1_possible_overlap_registers=299	side_1_read_count=166	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.47	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=153	side_2_redundant=0	total_non_overlap_reads=15
JC	193	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=7	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.803e-02	junction_possible_overlap_registers=290	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=175	max_left_minus=175	max_left_plus=122	max_min_left=144	max_min_left_minus=144	max_min_left_plus=122	max_min_right=145	max_min_right_minus=145	max_min_right_plus=0	max_pos_hash_score=580	max_right=241	max_right_minus=241	max_right_plus=196	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.10	new_junction_read_count=10	polymorphism_frequency=5.803e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.65	side_1_overlap=9	side_1_possible_overlap_registers=299	side_1_read_count=177	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.47	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=153	side_2_redundant=0	total_non_overlap_reads=10
UN	194	.	NC_000913	15650	15653
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UN	211	.	NC_000913	391995	392690
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UN	226	.	NC_000913	1468175	1468952
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UN	228	.	NC_000913	1470225	1470227
UN	229	.	NC_000913	1528549	1528886
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UN	232	.	NC_000913	1978495	1979270
UN	233	.	NC_000913	2067009	2067010
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UN	236	.	NC_000913	2102002	2102657
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UN	259	.	NC_000913	3622027	3622027
UN	260	.	NC_000913	3622029	3622029
UN	261	.	NC_000913	3622031	3622031
UN	262	.	NC_000913	3622033	3622033
UN	263	.	NC_000913	3652313	3652953
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UN	267	.	NC_000913	3763809	3763810
UN	268	.	NC_000913	3764341	3764341
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UN	277	.	NC_000913	4038422	4038425
UN	278	.	NC_000913	4039001	4039001
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UN	280	.	NC_000913	4039675	4039675
UN	281	.	NC_000913	4039677	4040315
UN	282	.	NC_000913	4166578	4166578
UN	283	.	NC_000913	4166582	4166605
UN	284	.	NC_000913	4166901	4167935
UN	285	.	NC_000913	4168820	4168820
UN	286	.	NC_000913	4168825	4171377
UN	287	.	NC_000913	4208386	4209463
UN	288	.	NC_000913	4210287	4212845
UN	289	.	NC_000913	4498476	4499250
UN	290	.	NC_000913	4507748	4508412