#=GENOME_DIFF	1.0
#=CREATED	10:36:33 29 Nov 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20240527run10/CV73_S7_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20240527run10/CV73_S7_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20240527run10/CV73_S7_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20240527run10/CV73_S7_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20240527run10/CV73_S7_L001_R2_001.fastq.gz
#=CONVERTED-BASES	120604157
#=CONVERTED-READS	483433
#=INPUT-BASES	120607103
#=INPUT-READS	483484
#=MAPPED-BASES	109135973
#=MAPPED-READS	438532
SNP	1	195	NC_000913	70659	A
SNP	2	196	NC_000913	100946	C
SNP	3	197	NC_000913	246747	T
DEL	4	388,400	NC_000913	257908	776
SNP	5	198	NC_000913	284535	G
MOB	6	403,404	NC_000913	303857	IS2	-1	5
SNP	7	199	NC_000913	313543	A
DEL	8	389,405	NC_000913	366181	93
SNP	9	200	NC_000913	367573	A
SNP	10	207	NC_000913	433896	C
SNP	11	208	NC_000913	471115	A
SUB	12	209,210	NC_000913	480295	2	AA
SNP	13	211	NC_000913	690948	A
SNP	14	212	NC_000913	700038	A
SNP	15	213	NC_000913	792018	T
SUB	16	214,215	NC_000913	809217	2	AG
SNP	17	216	NC_000913	863000	T
MOB	18	401,402	NC_000913	882207	IS1	-1	9
SNP	19	217	NC_000913	883396	T
SNP	20	218	NC_000913	905735	T
SNP	21	219	NC_000913	968837	A
SNP	22	220	NC_000913	1031775	G
SNP	23	221	NC_000913	1040126	T
DEL	24	222	NC_000913	1061935	1
SNP	25	223	NC_000913	1077715	A
SNP	26	224	NC_000913	1078638	T
SNP	27	225	NC_000913	1092247	A
SNP	28	226	NC_000913	1098620	A
SUB	29	227,228	NC_000913	1111727	2	TT
SNP	30	229	NC_000913	1169836	G
SNP	31	230	NC_000913	1189980	G
SNP	32	231	NC_000913	1194922	A
SNP	33	232	NC_000913	1196220	T
SNP	34	233	NC_000913	1196232	T
SNP	35	234	NC_000913	1196245	C
SNP	36	235	NC_000913	1196247	G
SNP	37	236	NC_000913	1196277	T
SNP	38	237	NC_000913	1196280	C
SNP	39	238	NC_000913	1196283	G
SNP	40	239	NC_000913	1196292	T
SNP	41	240	NC_000913	1196304	A
SNP	42	241	NC_000913	1196325	G
SNP	43	242	NC_000913	1252337	T
SNP	44	243	NC_000913	1253002	T
DEL	45	244	NC_000913	1271728	1
MOB	46	406,407	NC_000913	1293196	IS5	1	4
DEL	47	391,408	NC_000913	1299499	1199
SNP	48	245	NC_000913	1301992	T
SNP	49	246	NC_000913	1306736	G
SNP	50	247	NC_000913	1310770	G
SNP	51	248	NC_000913	1337394	G
SNP	52	249	NC_000913	1357202	T
SNP	53	250	NC_000913	1358859	C
SNP	54	251	NC_000913	1428052	C
SNP	55	252	NC_000913	1428097	C
SNP	56	253	NC_000913	1428391	C
SNP	57	254	NC_000913	1428424	G
SNP	58	255	NC_000913	1428432	A
SNP	59	256	NC_000913	1428451	C
SNP	60	257	NC_000913	1428463	A
SNP	61	258	NC_000913	1428487	A
SNP	62	259	NC_000913	1452943	A
SNP	63	260	NC_000913	1584092	A
MOB	64	410,411	NC_000913	1590536	IS2	1	5
SNP	65	261	NC_000913	1612881	A
SNP	66	262	NC_000913	1629247	T
SNP	67	263	NC_000913	1642112	A
SNP	68	264	NC_000913	1643679	T
SNP	69	265	NC_000913	1652331	C
SNP	70	266	NC_000913	1667460	A
SNP	71	267	NC_000913	1682459	G
SNP	72	268	NC_000913	1725576	A
SNP	73	269	NC_000913	1726528	C
SNP	74	270	NC_000913	1748841	T
SNP	75	271	NC_000913	1767014	T
MOB	76	409,412	NC_000913	1803431	IS5	-1	4
SNP	77	272	NC_000913	1816943	C
SUB	78	274,275	NC_000913	1848300	2	TT
SNP	79	276	NC_000913	1849629	C
SNP	80	277	NC_000913	1894839	C
SNP	81	278	NC_000913	1920373	T
DEL	82	393,413	NC_000913	1978503	776
SNP	83	279	NC_000913	2011066	G
SNP	84	280	NC_000913	2040433	A
SNP	85	281	NC_000913	2041278	A
MOB	86	415,416	NC_000913	2042111	IS5	-1	4
SNP	87	282	NC_000913	2052885	A
DEL	88	283	NC_000913	2111259	1
SNP	89	284	NC_000913	2126929	A
SNP	90	285	NC_000913	2142598	A
SNP	91	286	NC_000913	2155197	A
SNP	92	287	NC_000913	2172897	A
DEL	93	288,289	NC_000913	2173363	2
SNP	94	290	NC_000913	2173448	T
MOB	95	417,418	NC_000913	2176844	IS4	-1	13
SNP	96	291	NC_000913	2186824	T
SNP	97	292	NC_000913	2233609	T
MOB	98	419,420	NC_000913	2238948	IS186	-1	6	del_end=2	del_start=1
SNP	99	293	NC_000913	2242247	T
SNP	100	294	NC_000913	2247134	C
SNP	101	295	NC_000913	2307733	T
SUB	102	296,297	NC_000913	2310878	2	TT
SNP	103	298	NC_000913	2316059	A
SNP	104	299	NC_000913	2339161	C
SNP	105	300	NC_000913	2404402	A
SNP	106	301	NC_000913	2405990	G
SNP	107	302	NC_000913	2446592	A
DEL	108	303	NC_000913	2485636	1
SNP	109	304	NC_000913	2485638	A
SNP	110	305	NC_000913	2522369	A
DEL	111	394,421	NC_000913	2558699	6790
SNP	112	306	NC_000913	2587112	T
SNP	113	307	NC_000913	2668977	T
SNP	114	308	NC_000913	2702363	A
SNP	115	309	NC_000913	2741296	A
SNP	116	310	NC_000913	2774947	A
SNP	117	311	NC_000913	2804133	T
DEL	118	312	NC_000913	2814459	1
SNP	119	313	NC_000913	2814461	T
SNP	120	314	NC_000913	2817197	A
SNP	121	315	NC_000913	2867455	A
SNP	122	316	NC_000913	2871153	G
SNP	123	317	NC_000913	2880635	C
SNP	124	318	NC_000913	2926772	A
SNP	125	319	NC_000913	2936855	G
SNP	126	320	NC_000913	2937210	T
SNP	127	321	NC_000913	2938548	T
SNP	128	322	NC_000913	2968501	A
DEL	129	323	NC_000913	3025601	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	130	324	NC_000913	3050220	T
SNP	131	325	NC_000913	3070858	G
DEL	132	395,422	NC_000913	3100839	29307	mediated=IS5
DEL	133	326	NC_000913	3207549	1
SNP	134	327	NC_000913	3208513	T
SNP	135	328	NC_000913	3279276	G
SNP	136	329	NC_000913	3296481	A
SNP	137	330	NC_000913	3324965	T
SNP	138	331	NC_000913	3326537	A
SNP	139	332	NC_000913	3329743	T
SNP	140	333	NC_000913	3388041	G
SNP	141	334	NC_000913	3411689	T
SNP	142	335	NC_000913	3433900	T
SNP	143	336	NC_000913	3439485	T
SNP	144	337	NC_000913	3441528	A
SNP	145	338	NC_000913	3474424	G
MOB	146	423,424	NC_000913	3486010	IS2	-1	5	del_end=32	ins_end=GTCTTAATACTAGTTTTTAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA
SNP	147	339	NC_000913	3486502	T
SNP	148	340	NC_000913	3486552	A
SNP	149	341	NC_000913	3511466	T
SNP	150	342	NC_000913	3520507	A
SNP	151	343	NC_000913	3553095	A
SNP	152	344	NC_000913	3555047	C
SNP	153	345	NC_000913	3560362	A
INS	154	346	NC_000913	3560455	G
SNP	155	347	NC_000913	3647428	T
SNP	156	348	NC_000913	3707947	A
SNP	157	349	NC_000913	3719429	A
SNP	158	350	NC_000913	3725176	G
SUB	159	351,352	NC_000913	3729440	2	TT
SNP	160	353	NC_000913	3730560	T
SNP	161	354	NC_000913	3770539	T
DEL	162	355	NC_000913	3773173	1
SNP	163	356	NC_000913	3773176	T
INS	164	357	NC_000913	3815883	C
SNP	165	358	NC_000913	3853793	T
SNP	166	359	NC_000913	3925834	T
SNP	167	360	NC_000913	3926991	A
SUB	168	361,362	NC_000913	3966530	2	TT
SNP	169	363	NC_000913	3984524	T
MOB	170	426,427	NC_000913	4000721	IS4	-1	12
SNP	171	364	NC_000913	4003502	T
SNP	172	366	NC_000913	4091682	A
MOB	173	428,429	NC_000913	4123617	IS2	-1	5
SNP	174	367	NC_000913	4150418	G
SNP	175	368	NC_000913	4193996	G
SNP	176	369	NC_000913	4217310	G
SNP	177	370	NC_000913	4223638	C
SNP	178	371	NC_000913	4269485	A
INS	179	372,373	NC_000913	4296381	GC
SNP	180	374	NC_000913	4325644	T
SNP	181	375	NC_000913	4331890	T
SNP	182	376	NC_000913	4437890	T
SNP	183	377	NC_000913	4473900	T
SNP	184	378	NC_000913	4475493	C
SNP	185	379	NC_000913	4476605	A
SNP	186	380	NC_000913	4489016	T
SNP	187	381	NC_000913	4510238	G
SNP	188	382	NC_000913	4532409	G
MOB	189	414,425	NC_000913	4542237	IS1	-1	9
SNP	190	383	NC_000913	4546601	T
SNP	191	384	NC_000913	4596579	A
SNP	192	385	NC_000913	4631800	T
SNP	193	386	NC_000913	4636925	C
SNP	194	387	NC_000913	4638240	A
RA	195	.	NC_000913	70659	0	G	A	consensus_score=77.8	frequency=1	major_base=A	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	196	.	NC_000913	100946	0	T	C	bias_e_value=3881460	bias_p_value=0.836224	consensus_score=55.7	fisher_strand_p_value=0.48538	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=9/8	major_frequency=8.947e-01	minor_base=A	minor_cov=2/0	new_cov=9/8	polymorphism_frequency=8.947e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=11/8
RA	197	.	NC_000913	246747	0	G	T	bias_e_value=2648190	bias_p_value=0.570528	consensus_score=136.4	fisher_strand_p_value=0.231707	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/18	major_frequency=9.512e-01	minor_base=G	minor_cov=0/2	new_cov=21/18	polymorphism_frequency=9.512e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=21/20
RA	198	.	NC_000913	284535	0	T	G	consensus_score=129.8	frequency=1	major_base=G	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	199	.	NC_000913	313543	0	G	A	bias_e_value=3857330	bias_p_value=0.831026	consensus_score=74.2	fisher_strand_p_value=0.478261	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=10/12	major_frequency=9.565e-01	minor_base=C	minor_cov=1/0	new_cov=10/12	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	200	.	NC_000913	367573	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=120.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/17	major_frequency=9.722e-01	minor_base=C	minor_cov=0/1	new_cov=18/17	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/18
RA	201	.	NC_000913	377402	0	G	A	bias_e_value=4175280	bias_p_value=0.899524	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.1	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.586646	major_base=G	major_cov=9/11	major_frequency=6.667e-01	minor_base=A	minor_cov=4/6	new_cov=4/6	polymorphism_frequency=3.333e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=9/11	total_cov=13/18
RA	202	.	NC_000913	377407	0	C	T	bias_e_value=4441850	bias_p_value=0.956954	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.7	fisher_strand_p_value=1	frequency=3.448e-01	ks_quality_p_value=0.721315	major_base=C	major_cov=9/10	major_frequency=6.552e-01	minor_base=T	minor_cov=4/6	new_cov=4/6	polymorphism_frequency=3.448e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=9/10	total_cov=13/16
RA	203	.	NC_000913	377423	0	G	T	bias_e_value=2392840	bias_p_value=0.515515	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.8	fisher_strand_p_value=1	frequency=2.759e-01	ks_quality_p_value=0.196065	major_base=G	major_cov=9/12	major_frequency=7.241e-01	minor_base=T	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=2.759e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=9/12	total_cov=12/17
RA	204	.	NC_000913	377425	0	C	T	bias_e_value=1728770	bias_p_value=0.372447	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.8	fisher_strand_p_value=1	frequency=2.759e-01	ks_quality_p_value=0.119066	major_base=C	major_cov=9/12	major_frequency=7.241e-01	minor_base=T	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=2.759e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=9/12	total_cov=12/17
RA	205	.	NC_000913	377431	1	.	T	bias_e_value=3878990	bias_p_value=0.835692	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.9	fisher_strand_p_value=1	frequency=2.593e-01	ks_quality_p_value=0.484645	major_base=.	major_cov=9/11	major_frequency=7.407e-01	minor_base=T	minor_cov=3/4	new_cov=3/4	polymorphism_frequency=2.593e-01	polymorphism_score=31.1	prediction=polymorphism	ref_cov=9/11	total_cov=12/15
RA	206	.	NC_000913	377432	0	C	G	bias_e_value=3373580	bias_p_value=0.726806	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.1	fisher_strand_p_value=1	frequency=2.593e-01	ks_quality_p_value=0.359034	major_base=C	major_cov=9/11	major_frequency=7.407e-01	minor_base=G	minor_cov=3/4	new_cov=3/4	polymorphism_frequency=2.593e-01	polymorphism_score=20.7	prediction=polymorphism	ref_cov=9/11	total_cov=12/15
RA	207	.	NC_000913	433896	0	T	C	consensus_score=90.1	frequency=1	major_base=C	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	208	.	NC_000913	471115	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=92.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/12	major_frequency=9.630e-01	minor_base=C	minor_cov=1/0	new_cov=14/12	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	209	.	NC_000913	480295	0	G	A	consensus_score=54.9	frequency=1	major_base=A	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	210	.	NC_000913	480296	0	G	A	consensus_score=49.2	frequency=1	major_base=A	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	211	.	NC_000913	690948	0	G	A	consensus_score=60.1	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	212	.	NC_000913	700038	0	G	A	consensus_score=62.8	frequency=1	major_base=A	major_cov=12/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/6
RA	213	.	NC_000913	792018	0	C	T	consensus_score=111.5	frequency=1	major_base=T	major_cov=14/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/19
RA	214	.	NC_000913	809217	0	C	A	bias_e_value=4640090	bias_p_value=0.999664	consensus_score=56.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.974195	major_base=A	major_cov=9/8	major_frequency=9.444e-01	minor_base=.	minor_cov=0/1	new_cov=9/8	polymorphism_frequency=9.444e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	215	.	NC_000913	809218	0	A	G	bias_e_value=4641550	bias_p_value=0.999979	consensus_score=57.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993485	major_base=G	major_cov=9/8	major_frequency=9.444e-01	minor_base=A	minor_cov=0/1	new_cov=9/8	polymorphism_frequency=9.444e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=9/9
RA	216	.	NC_000913	863000	0	G	T	bias_e_value=3509920	bias_p_value=0.75618	consensus_score=52.4	fisher_strand_p_value=0.388889	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/6	major_frequency=9.444e-01	minor_base=C	minor_cov=0/1	new_cov=11/6	polymorphism_frequency=9.444e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	217	.	NC_000913	883396	0	C	T	bias_e_value=4641550	bias_p_value=0.999979	consensus_score=49.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993485	major_base=T	major_cov=7/10	major_frequency=9.444e-01	minor_base=G	minor_cov=0/1	new_cov=7/10	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	218	.	NC_000913	905735	0	C	T	consensus_score=84.9	frequency=1	major_base=T	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	219	.	NC_000913	968837	0	G	A	consensus_score=52.7	frequency=1	major_base=A	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	220	.	NC_000913	1031775	0	T	G	consensus_score=71.4	frequency=1	major_base=G	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	221	.	NC_000913	1040126	0	G	T	consensus_score=63.8	frequency=1	major_base=T	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	222	.	NC_000913	1061935	0	G	.	bias_e_value=1373540	bias_p_value=0.295916	consensus_score=116.0	fisher_strand_p_value=0.0855615	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=19/13	major_frequency=9.143e-01	minor_base=C	minor_cov=0/3	new_cov=19/13	polymorphism_frequency=9.143e-01	polymorphism_score=3.2	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	223	.	NC_000913	1077715	0	C	A	consensus_score=64.9	frequency=1	major_base=A	major_cov=7/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/12
RA	224	.	NC_000913	1078638	0	G	T	consensus_score=68.9	frequency=1	major_base=T	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	225	.	NC_000913	1092247	0	C	A	consensus_score=81.6	frequency=1	major_base=A	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	226	.	NC_000913	1098620	0	T	A	consensus_score=40.0	frequency=1	major_base=A	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	227	.	NC_000913	1111727	0	C	T	bias_e_value=3426660	bias_p_value=0.738241	consensus_score=90.8	fisher_strand_p_value=0.37037	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/9	major_frequency=9.630e-01	minor_base=G	minor_cov=0/1	new_cov=17/9	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	228	.	NC_000913	1111728	0	C	T	consensus_score=89.5	frequency=1	major_base=T	major_cov=17/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	229	.	NC_000913	1169836	0	A	G	consensus_score=63.8	frequency=1	major_base=G	major_cov=12/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/6
RA	230	.	NC_000913	1189980	0	A	G	consensus_score=40.7	frequency=1	major_base=G	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	231	.	NC_000913	1194922	0	G	A	consensus_score=67.2	frequency=1	major_base=A	major_cov=10/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/10
RA	232	.	NC_000913	1196220	0	C	T	consensus_score=48.4	frequency=1	major_base=T	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	233	.	NC_000913	1196232	0	C	T	consensus_score=41.3	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	234	.	NC_000913	1196245	0	T	C	consensus_score=39.7	frequency=1	major_base=C	major_cov=8/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/7
RA	235	.	NC_000913	1196247	0	A	G	consensus_score=39.2	frequency=1	major_base=G	major_cov=8/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/7
RA	236	.	NC_000913	1196277	0	C	T	consensus_score=26.3	frequency=1	major_base=T	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	237	.	NC_000913	1196280	0	G	C	consensus_score=29.1	frequency=1	major_base=C	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	238	.	NC_000913	1196283	0	A	G	consensus_score=27.0	frequency=1	major_base=G	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	239	.	NC_000913	1196292	0	C	T	consensus_score=24.0	frequency=1	major_base=T	major_cov=5/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/6
RA	240	.	NC_000913	1196304	0	G	A	consensus_score=13.1	frequency=1	major_base=A	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	241	.	NC_000913	1196325	0	A	G	consensus_score=10.1	frequency=1	major_base=G	major_cov=4/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/3
RA	242	.	NC_000913	1252337	0	G	T	consensus_score=54.2	frequency=1	major_base=T	major_cov=5/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/13
RA	243	.	NC_000913	1253002	0	C	T	bias_e_value=4039830	bias_p_value=0.870343	consensus_score=67.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.536131	major_base=T	major_cov=14/7	major_frequency=9.545e-01	minor_base=C	minor_cov=1/0	new_cov=14/7	polymorphism_frequency=9.545e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=15/7
RA	244	.	NC_000913	1271728	0	G	.	consensus_score=76.1	frequency=1	major_base=.	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	245	.	NC_000913	1301992	0	A	T	consensus_score=73.5	frequency=1	major_base=T	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	246	.	NC_000913	1306736	0	T	G	bias_e_value=3881460	bias_p_value=0.836224	consensus_score=52.0	fisher_strand_p_value=0.48538	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=8/9	major_frequency=8.947e-01	minor_base=T	minor_cov=0/2	new_cov=8/9	polymorphism_frequency=8.947e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=8/11
RA	247	.	NC_000913	1310770	0	A	G	consensus_score=60.5	frequency=1	major_base=G	major_cov=12/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/5
RA	248	.	NC_000913	1337394	0	A	G	consensus_score=43.4	frequency=1	major_base=G	major_cov=9/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/4
RA	249	.	NC_000913	1357202	0	C	T	consensus_score=36.9	frequency=1	major_base=T	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	250	.	NC_000913	1358859	0	T	C	bias_e_value=3355410	bias_p_value=0.722891	consensus_score=56.5	fisher_strand_p_value=0.36	frequency=1	ks_quality_p_value=0.986755	major_base=C	major_cov=16/8	major_frequency=9.600e-01	minor_base=A	minor_cov=0/1	new_cov=16/8	polymorphism_frequency=9.600e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	251	.	NC_000913	1428052	0	T	C	bias_e_value=3947040	bias_p_value=0.850352	consensus_score=32.7	fisher_strand_p_value=0.505495	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=7/5	major_frequency=8.571e-01	minor_base=A	minor_cov=2/0	new_cov=7/5	polymorphism_frequency=8.571e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	252	.	NC_000913	1428097	0	A	C	consensus_score=14.0	frequency=1	major_base=C	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	253	.	NC_000913	1428391	0	G	C	consensus_score=18.4	frequency=1	major_base=C	major_cov=2/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/5
RA	254	.	NC_000913	1428424	0	A	G	consensus_score=29.4	frequency=1	major_base=G	major_cov=3/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/9
RA	255	.	NC_000913	1428432	0	G	A	consensus_score=34.8	frequency=1	major_base=A	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	256	.	NC_000913	1428451	0	T	C	consensus_score=41.3	frequency=1	major_base=C	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	257	.	NC_000913	1428463	0	G	A	consensus_score=55.1	frequency=1	major_base=A	major_cov=6/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/13
RA	258	.	NC_000913	1428487	0	G	A	consensus_score=58.8	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	259	.	NC_000913	1452943	0	C	A	consensus_score=81.2	frequency=1	major_base=A	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	260	.	NC_000913	1584092	0	G	A	consensus_score=63.0	frequency=1	major_base=A	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	261	.	NC_000913	1612881	0	C	A	consensus_score=56.2	frequency=1	major_base=A	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	262	.	NC_000913	1629247	0	C	T	consensus_score=55.9	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	263	.	NC_000913	1642112	0	G	A	consensus_score=57.8	frequency=1	major_base=A	major_cov=6/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	264	.	NC_000913	1643679	0	A	T	consensus_score=45.4	frequency=1	major_base=T	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	265	.	NC_000913	1652331	0	T	C	consensus_score=83.7	frequency=1	major_base=C	major_cov=10/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/14
RA	266	.	NC_000913	1667460	0	G	A	consensus_score=87.5	frequency=1	major_base=A	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	267	.	NC_000913	1682459	0	A	G	consensus_score=59.4	frequency=1	major_base=G	major_cov=6/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	268	.	NC_000913	1725576	0	C	A	bias_e_value=2331330	bias_p_value=0.502264	consensus_score=82.4	fisher_strand_p_value=0.188034	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=10/15	major_frequency=9.259e-01	minor_base=C	minor_cov=2/0	new_cov=10/15	polymorphism_frequency=9.259e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=2/0	total_cov=12/15
RA	269	.	NC_000913	1726528	0	G	C	bias_e_value=4640090	bias_p_value=0.999664	consensus_score=46.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.974195	major_base=C	major_cov=11/6	major_frequency=9.444e-01	minor_base=A	minor_cov=1/0	new_cov=11/6	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	270	.	NC_000913	1748841	0	C	T	consensus_score=71.5	frequency=1	major_base=T	major_cov=9/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/15
RA	271	.	NC_000913	1767014	0	C	T	bias_e_value=4641630	bias_p_value=0.999996	consensus_score=86.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997155	major_base=T	major_cov=14/12	major_frequency=9.630e-01	minor_base=A	minor_cov=1/0	new_cov=14/12	polymorphism_frequency=9.630e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	272	.	NC_000913	1816943	0	T	C	consensus_score=63.9	frequency=1	major_base=C	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	273	.	NC_000913	1830697	0	G	C	bias_e_value=36.758	bias_p_value=7.91915e-06	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.3	fisher_strand_p_value=0.0001554	frequency=5.333e-01	ks_quality_p_value=0.00329066	major_base=C	major_cov=8/0	major_frequency=5.333e-01	minor_base=G	minor_cov=0/7	new_cov=8/0	polymorphism_frequency=5.333e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=0/7	total_cov=8/7
RA	274	.	NC_000913	1848300	0	C	T	consensus_score=87.5	frequency=1	major_base=T	major_cov=17/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/8
RA	275	.	NC_000913	1848301	0	C	T	consensus_score=81.7	frequency=1	major_base=T	major_cov=17/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/8
RA	276	.	NC_000913	1849629	0	T	C	bias_e_value=4641300	bias_p_value=0.999925	consensus_score=89.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.987768	major_base=C	major_cov=12/13	major_frequency=9.615e-01	minor_base=A	minor_cov=0/1	new_cov=12/13	polymorphism_frequency=9.615e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	277	.	NC_000913	1894839	0	T	C	consensus_score=81.8	frequency=1	major_base=C	major_cov=10/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/14
RA	278	.	NC_000913	1920373	0	G	T	consensus_score=54.3	frequency=1	major_base=T	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	279	.	NC_000913	2011066	0	A	G	consensus_score=64.1	frequency=1	major_base=G	major_cov=6/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/12
RA	280	.	NC_000913	2040433	0	C	A	consensus_score=84.5	frequency=1	major_base=A	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	281	.	NC_000913	2041278	0	G	A	consensus_score=83.0	frequency=1	major_base=A	major_cov=9/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/15
RA	282	.	NC_000913	2052885	0	G	A	consensus_score=61.2	frequency=1	major_base=A	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	283	.	NC_000913	2111259	0	G	.	bias_e_value=4638370	bias_p_value=0.999293	consensus_score=56.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.962621	major_base=.	major_cov=10/4	major_frequency=9.333e-01	minor_base=G	minor_cov=1/0	new_cov=10/4	polymorphism_frequency=9.333e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/0	total_cov=11/4
RA	284	.	NC_000913	2126929	0	T	A	consensus_score=62.4	frequency=1	major_base=A	major_cov=6/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/13
RA	285	.	NC_000913	2142598	0	G	A	consensus_score=77.0	frequency=1	major_base=A	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	286	.	NC_000913	2155197	0	G	A	bias_e_value=3798710	bias_p_value=0.818395	consensus_score=72.4	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=11/14	major_frequency=9.615e-01	minor_base=C	minor_cov=1/0	new_cov=11/14	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	287	.	NC_000913	2172897	0	G	A	consensus_score=43.1	frequency=1	major_base=A	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	288	.	NC_000913	2173363	0	C	.	bias_e_value=3391330	bias_p_value=0.73063	consensus_score=68.2	fisher_strand_p_value=0.478947	frequency=1	ks_quality_p_value=0.757465	major_base=.	major_cov=9/9	major_frequency=9.000e-01	minor_base=C	minor_cov=0/2	new_cov=9/9	polymorphism_frequency=9.000e-01	polymorphism_score=4.1	prediction=consensus	ref_cov=0/2	total_cov=9/11
RA	289	.	NC_000913	2173364	0	C	.	bias_e_value=2941450	bias_p_value=0.633708	consensus_score=68.2	fisher_strand_p_value=0.478947	frequency=1	ks_quality_p_value=0.580164	major_base=.	major_cov=9/9	major_frequency=9.000e-01	minor_base=C	minor_cov=0/2	new_cov=9/9	polymorphism_frequency=9.000e-01	polymorphism_score=4.1	prediction=consensus	ref_cov=0/2	total_cov=9/11
RA	290	.	NC_000913	2173448	0	C	T	consensus_score=64.4	frequency=1	major_base=T	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	291	.	NC_000913	2186824	0	G	T	consensus_score=77.5	frequency=1	major_base=T	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	292	.	NC_000913	2233609	0	C	T	consensus_score=54.1	frequency=1	major_base=T	major_cov=6/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	293	.	NC_000913	2242247	0	C	T	consensus_score=94.4	frequency=1	major_base=T	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	294	.	NC_000913	2247134	0	A	C	consensus_score=73.1	frequency=1	major_base=C	major_cov=17/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/7
RA	295	.	NC_000913	2307733	0	C	T	bias_e_value=3963930	bias_p_value=0.85399	consensus_score=52.0	fisher_strand_p_value=0.51087	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/13	major_frequency=9.167e-01	minor_base=C	minor_cov=0/2	new_cov=9/13	polymorphism_frequency=9.167e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/2	total_cov=9/15
RA	296	.	NC_000913	2310878	0	A	T	consensus_score=59.5	frequency=1	major_base=T	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	297	.	NC_000913	2310879	0	C	T	consensus_score=61.0	frequency=1	major_base=T	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	298	.	NC_000913	2316059	0	C	A	consensus_score=66.5	frequency=1	major_base=A	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	299	.	NC_000913	2339161	0	T	C	bias_e_value=4641170	bias_p_value=0.999896	consensus_score=73.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985612	major_base=C	major_cov=12/11	major_frequency=9.583e-01	minor_base=A	minor_cov=0/1	new_cov=12/11	polymorphism_frequency=9.583e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/0	total_cov=12/12
RA	300	.	NC_000913	2404402	0	G	A	consensus_score=78.5	frequency=1	major_base=A	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	301	.	NC_000913	2405990	0	C	G	consensus_score=75.7	frequency=1	major_base=G	major_cov=10/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/14
RA	302	.	NC_000913	2446592	0	C	A	consensus_score=49.3	frequency=1	major_base=A	major_cov=11/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/8
RA	303	.	NC_000913	2485636	0	A	.	consensus_score=50.4	frequency=1	major_base=.	major_cov=7/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	304	.	NC_000913	2485638	0	T	A	consensus_score=36.5	frequency=1	major_base=A	major_cov=7/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	305	.	NC_000913	2522369	0	G	A	consensus_score=75.8	frequency=1	major_base=A	major_cov=11/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/11
RA	306	.	NC_000913	2587112	0	C	T	bias_e_value=3542280	bias_p_value=0.763151	consensus_score=98.2	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=0.905933	major_base=T	major_cov=13/18	major_frequency=9.688e-01	minor_base=C	minor_cov=1/0	new_cov=13/18	polymorphism_frequency=9.688e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=14/18
RA	307	.	NC_000913	2668977	0	C	T	consensus_score=55.4	frequency=1	major_base=T	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	308	.	NC_000913	2702363	0	G	A	consensus_score=108.2	frequency=1	major_base=A	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	309	.	NC_000913	2741296	0	C	A	consensus_score=58.5	frequency=1	major_base=A	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	310	.	NC_000913	2774947	0	G	A	consensus_score=51.6	frequency=1	major_base=A	major_cov=8/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/7
RA	311	.	NC_000913	2804133	0	C	T	consensus_score=58.4	frequency=1	major_base=T	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	312	.	NC_000913	2814459	0	A	.	consensus_score=102.9	frequency=1	major_base=.	major_cov=9/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/15
RA	313	.	NC_000913	2814461	0	C	T	consensus_score=75.3	frequency=1	major_base=T	major_cov=9/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/15
RA	314	.	NC_000913	2817197	0	G	A	consensus_score=66.2	frequency=1	major_base=A	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	315	.	NC_000913	2867455	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=78.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=8/15	major_frequency=9.583e-01	minor_base=T	minor_cov=0/1	new_cov=8/15	polymorphism_frequency=9.583e-01	polymorphism_score=-7.0	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	316	.	NC_000913	2871153	0	T	G	consensus_score=107.4	frequency=1	major_base=G	major_cov=14/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	317	.	NC_000913	2880635	0	T	C	consensus_score=49.7	frequency=1	major_base=C	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	318	.	NC_000913	2926772	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=51.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/4	major_frequency=9.091e-01	minor_base=C	minor_cov=2/0	new_cov=16/4	polymorphism_frequency=9.091e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=18/4
RA	319	.	NC_000913	2936855	0	T	G	bias_e_value=3733750	bias_p_value=0.804401	consensus_score=89.4	fisher_strand_p_value=0.448276	frequency=1	ks_quality_p_value=0.990196	major_base=G	major_cov=16/12	major_frequency=9.655e-01	minor_base=C	minor_cov=0/1	new_cov=16/12	polymorphism_frequency=9.655e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	320	.	NC_000913	2937210	0	C	T	consensus_score=97.2	frequency=1	major_base=T	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	321	.	NC_000913	2938548	0	A	T	consensus_score=42.5	frequency=1	major_base=T	major_cov=6/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	322	.	NC_000913	2968501	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=88.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=6/20	major_frequency=9.630e-01	minor_base=G	minor_cov=0/1	new_cov=6/20	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/21
RA	323	.	NC_000913	3025601	0	T	.	consensus_score=104.8	frequency=1	major_base=.	major_cov=9/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/14
RA	324	.	NC_000913	3050220	0	G	T	consensus_score=82.9	frequency=1	major_base=T	major_cov=9/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/14
RA	325	.	NC_000913	3070858	0	T	G	bias_e_value=3759000	bias_p_value=0.809841	consensus_score=112.0	fisher_strand_p_value=0.451613	frequency=1	ks_quality_p_value=0.997852	major_base=G	major_cov=17/13	major_frequency=9.677e-01	minor_base=T	minor_cov=0/1	new_cov=17/13	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=17/14
RA	326	.	NC_000913	3207549	0	G	.	bias_e_value=4623720	bias_p_value=0.996137	consensus_score=99.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.913402	major_base=.	major_cov=11/12	major_frequency=9.583e-01	minor_base=G	minor_cov=0/1	new_cov=11/12	polymorphism_frequency=9.583e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=0/1	total_cov=11/13
RA	327	.	NC_000913	3208513	0	G	T	bias_e_value=1891500	bias_p_value=0.407506	consensus_score=90.1	fisher_strand_p_value=0.448276	frequency=1	ks_quality_p_value=0.303578	major_base=T	major_cov=16/12	major_frequency=9.655e-01	minor_base=G	minor_cov=0/1	new_cov=16/12	polymorphism_frequency=9.655e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=16/13
RA	328	.	NC_000913	3279276	0	C	G	bias_e_value=3872630	bias_p_value=0.834322	consensus_score=82.4	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=13/14	major_frequency=9.310e-01	minor_base=T	minor_cov=2/0	new_cov=13/14	polymorphism_frequency=9.310e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	329	.	NC_000913	3296481	0	G	A	consensus_score=136.6	frequency=1	major_base=A	major_cov=24/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/17
RA	330	.	NC_000913	3324965	0	G	T	bias_e_value=3588740	bias_p_value=0.77316	consensus_score=71.4	fisher_strand_p_value=0.409091	frequency=1	ks_quality_p_value=0.99568	major_base=T	major_cov=13/8	major_frequency=9.545e-01	minor_base=G	minor_cov=0/1	new_cov=13/8	polymorphism_frequency=9.545e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=13/9
RA	331	.	NC_000913	3326537	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=86.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/12	major_frequency=9.630e-01	minor_base=C	minor_cov=1/0	new_cov=14/12	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=15/12
RA	332	.	NC_000913	3329743	0	G	T	consensus_score=92.7	frequency=1	major_base=T	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	333	.	NC_000913	3388041	0	T	G	consensus_score=80.8	frequency=1	major_base=G	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	334	.	NC_000913	3411689	0	G	T	consensus_score=84.8	frequency=1	major_base=T	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	335	.	NC_000913	3433900	0	C	T	bias_e_value=4641530	bias_p_value=0.999973	consensus_score=52.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992674	major_base=T	major_cov=9/7	major_frequency=9.412e-01	minor_base=A	minor_cov=1/0	new_cov=9/7	polymorphism_frequency=9.412e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	336	.	NC_000913	3439485	0	C	T	consensus_score=38.1	frequency=1	major_base=T	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	337	.	NC_000913	3441528	0	C	A	consensus_score=108.7	frequency=1	major_base=A	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	338	.	NC_000913	3474424	0	T	G	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=110.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997852	major_base=G	major_cov=12/18	major_frequency=9.677e-01	minor_base=C	minor_cov=0/1	new_cov=12/18	polymorphism_frequency=9.677e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=12/19
RA	339	.	NC_000913	3486502	0	C	T	consensus_score=75.2	frequency=1	major_base=T	major_cov=10/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	340	.	NC_000913	3486552	0	G	A	consensus_score=90.0	frequency=1	major_base=A	major_cov=10/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/16
RA	341	.	NC_000913	3511466	0	C	T	bias_e_value=3226360	bias_p_value=0.695088	consensus_score=69.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.329306	major_base=T	major_cov=13/12	major_frequency=9.615e-01	minor_base=C	minor_cov=0/1	new_cov=13/12	polymorphism_frequency=9.615e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=13/13
RA	342	.	NC_000913	3520507	0	G	A	consensus_score=40.2	frequency=1	major_base=A	major_cov=7/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/7
RA	343	.	NC_000913	3553095	0	C	A	consensus_score=66.0	frequency=1	major_base=A	major_cov=14/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/5
RA	344	.	NC_000913	3555047	0	G	C	consensus_score=56.1	frequency=1	major_base=C	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	345	.	NC_000913	3560362	0	G	A	bias_e_value=2146590	bias_p_value=0.462462	consensus_score=54.6	fisher_strand_p_value=0.177866	frequency=1	ks_quality_p_value=0.928176	major_base=A	major_cov=13/8	major_frequency=9.130e-01	minor_base=C	minor_cov=0/2	new_cov=13/8	polymorphism_frequency=9.130e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	346	.	NC_000913	3560455	1	.	G	bias_e_value=4641630	bias_p_value=0.999996	consensus_score=94.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997155	major_base=G	major_cov=13/13	major_frequency=9.630e-01	minor_base=.	minor_cov=1/0	new_cov=13/13	polymorphism_frequency=9.630e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=14/13
RA	347	.	NC_000913	3647428	0	C	T	consensus_score=78.8	frequency=1	major_base=T	major_cov=7/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/19
RA	348	.	NC_000913	3707947	0	C	A	consensus_score=68.1	frequency=1	major_base=A	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	349	.	NC_000913	3719429	0	G	A	consensus_score=71.5	frequency=1	major_base=A	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	350	.	NC_000913	3725176	0	T	G	consensus_score=57.0	frequency=1	major_base=G	major_cov=4/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/14
RA	351	.	NC_000913	3729440	0	C	T	consensus_score=107.2	frequency=1	major_base=T	major_cov=14/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	352	.	NC_000913	3729441	0	C	T	consensus_score=110.4	frequency=1	major_base=T	major_cov=14/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	353	.	NC_000913	3730560	0	C	T	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=90.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997358	major_base=T	major_cov=14/13	major_frequency=9.643e-01	minor_base=A	minor_cov=0/1	new_cov=14/13	polymorphism_frequency=9.643e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	354	.	NC_000913	3770539	0	C	T	consensus_score=82.7	frequency=1	major_base=T	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	355	.	NC_000913	3773173	0	G	.	consensus_score=122.3	frequency=1	major_base=.	major_cov=11/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/16
RA	356	.	NC_000913	3773176	0	C	T	bias_e_value=4641390	bias_p_value=0.999944	consensus_score=88.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.989474	major_base=T	major_cov=12/15	major_frequency=9.643e-01	minor_base=G	minor_cov=0/1	new_cov=12/15	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/16
RA	357	.	NC_000913	3815883	1	.	C	bias_e_value=3694240	bias_p_value=0.795889	consensus_score=134.7	fisher_strand_p_value=0.435897	frequency=1	ks_quality_p_value=0.994616	major_base=C	major_cov=22/16	major_frequency=9.744e-01	minor_base=.	minor_cov=0/1	new_cov=22/16	polymorphism_frequency=9.744e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=22/17
RA	358	.	NC_000913	3853793	0	G	T	consensus_score=73.9	frequency=1	major_base=T	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	359	.	NC_000913	3925834	0	C	T	consensus_score=81.4	frequency=1	major_base=T	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	360	.	NC_000913	3926991	0	G	A	consensus_score=79.3	frequency=1	major_base=A	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	361	.	NC_000913	3966530	0	C	T	consensus_score=67.0	frequency=1	major_base=T	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	362	.	NC_000913	3966531	0	C	T	consensus_score=66.6	frequency=1	major_base=T	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	363	.	NC_000913	3984524	0	G	T	bias_e_value=4641620	bias_p_value=0.999993	consensus_score=74.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996383	major_base=T	major_cov=11/12	major_frequency=9.583e-01	minor_base=G	minor_cov=0/1	new_cov=11/12	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=11/13
RA	364	.	NC_000913	4003502	0	G	T	consensus_score=25.8	frequency=1	major_base=T	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	365	.	NC_000913	4037496	0	A	T	bias_e_value=3539290	bias_p_value=0.762506	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.6	fisher_strand_p_value=0.476413	frequency=5.588e-01	ks_quality_p_value=0.830474	major_base=T	major_cov=11/8	major_frequency=5.588e-01	minor_base=A	minor_cov=11/4	new_cov=11/8	polymorphism_frequency=5.588e-01	polymorphism_score=43.0	prediction=polymorphism	ref_cov=11/4	total_cov=22/12
RA	366	.	NC_000913	4091682	0	C	A	consensus_score=86.4	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	367	.	NC_000913	4150418	0	A	G	consensus_score=60.8	frequency=1	major_base=G	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	368	.	NC_000913	4193996	0	T	G	consensus_score=65.1	frequency=1	major_base=G	major_cov=10/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	369	.	NC_000913	4217310	0	A	G	consensus_score=54.7	frequency=1	major_base=G	major_cov=6/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	370	.	NC_000913	4223638	0	T	C	bias_e_value=1380290	bias_p_value=0.29737	consensus_score=77.6	fisher_strand_p_value=0.0861538	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=6/18	major_frequency=9.231e-01	minor_base=T	minor_cov=2/0	new_cov=6/18	polymorphism_frequency=9.231e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=2/0	total_cov=8/18
RA	371	.	NC_000913	4269485	0	G	A	consensus_score=41.3	frequency=1	major_base=A	major_cov=12/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/1
RA	372	.	NC_000913	4296380	1	.	C	bias_e_value=3756620	bias_p_value=0.809328	consensus_score=67.4	fisher_strand_p_value=0.45	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=8/11	major_frequency=9.500e-01	minor_base=.	minor_cov=1/0	new_cov=8/11	polymorphism_frequency=9.500e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=9/11
RA	373	.	NC_000913	4296380	2	.	G	bias_e_value=3747840	bias_p_value=0.807436	consensus_score=63.3	fisher_strand_p_value=0.45	frequency=1	ks_quality_p_value=0.994751	major_base=G	major_cov=8/11	major_frequency=9.500e-01	minor_base=.	minor_cov=1/0	new_cov=8/11	polymorphism_frequency=9.500e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=9/11
RA	374	.	NC_000913	4325644	0	C	T	bias_e_value=4641170	bias_p_value=0.999896	consensus_score=76.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985612	major_base=T	major_cov=11/12	major_frequency=9.583e-01	minor_base=C	minor_cov=1/0	new_cov=11/12	polymorphism_frequency=9.583e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=12/12
RA	375	.	NC_000913	4331890	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=47.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=7/8	major_frequency=9.375e-01	minor_base=.	minor_cov=0/1	new_cov=7/8	polymorphism_frequency=9.375e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	376	.	NC_000913	4437890	0	C	T	consensus_score=89.7	frequency=1	major_base=T	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	377	.	NC_000913	4473900	0	C	T	consensus_score=68.0	frequency=1	major_base=T	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	378	.	NC_000913	4475493	0	T	C	consensus_score=90.5	frequency=1	major_base=C	major_cov=9/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/17
RA	379	.	NC_000913	4476605	0	G	A	consensus_score=32.1	frequency=1	major_base=A	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	380	.	NC_000913	4489016	0	C	T	consensus_score=135.7	frequency=1	major_base=T	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	381	.	NC_000913	4510238	0	T	G	bias_e_value=4598890	bias_p_value=0.990787	consensus_score=76.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.867368	major_base=G	major_cov=11/11	major_frequency=9.565e-01	minor_base=.	minor_cov=0/1	new_cov=11/11	polymorphism_frequency=9.565e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	382	.	NC_000913	4532409	0	T	G	consensus_score=92.3	frequency=1	major_base=G	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	383	.	NC_000913	4546601	0	C	T	consensus_score=131.2	frequency=1	major_base=T	major_cov=22/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/13
RA	384	.	NC_000913	4596579	0	C	A	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=54.4	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/12	major_frequency=9.500e-01	minor_base=G	minor_cov=1/0	new_cov=7/12	polymorphism_frequency=9.500e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	385	.	NC_000913	4631800	0	G	T	consensus_score=81.0	frequency=1	major_base=T	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	386	.	NC_000913	4636925	0	G	C	consensus_score=117.7	frequency=1	major_base=C	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	387	.	NC_000913	4638240	0	G	A	consensus_score=106.2	frequency=1	major_base=A	major_cov=11/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/19
MC	388	.	NC_000913	257908	258683	763	0	left_inside_cov=0	left_outside_cov=32	right_inside_cov=2	right_outside_cov=34
MC	389	.	NC_000913	366181	366273	0	0	left_inside_cov=0	left_outside_cov=26	right_inside_cov=0	right_outside_cov=26
MC	390	.	NC_000913	1196341	1211489	0	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=5	right_outside_cov=6
MC	391	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=16	right_inside_cov=0	right_outside_cov=16
MC	392	.	NC_000913	1428148	1428385	0	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=5	right_outside_cov=6
MC	393	.	NC_000913	1978503	1979278	763	0	left_inside_cov=0	left_outside_cov=9	right_inside_cov=1	right_outside_cov=10
MC	394	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=24	right_inside_cov=1	right_outside_cov=25
MC	395	.	NC_000913	3100839	3131166	0	1022	left_inside_cov=0	left_outside_cov=31	right_inside_cov=5	right_outside_cov=6
MC	396	.	NC_000913	3423873	3424445	360	203	left_inside_cov=5	left_outside_cov=6	right_inside_cov=5	right_outside_cov=6
MC	397	.	NC_000913	4035359	4036916	373	1180	left_inside_cov=5	left_outside_cov=6	right_inside_cov=5	right_outside_cov=6
JC	398	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=248	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=246	max_left_minus=242	max_left_plus=246	max_min_left=109	max_min_left_minus=73	max_min_left_plus=109	max_min_right=123	max_min_right_minus=123	max_min_right_plus=37	max_pos_hash_score=496	max_right=250	max_right_minus=250	max_right_plus=222	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=248	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=248	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22
JC	399	.	NC_000913	256107	-1	NC_000913	371382	1	0	alignment_overlap=8	coverage_minus=9	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=4.005e-01	junction_possible_overlap_registers=240	key=NC_000913__256107__-1__NC_000913__371374__1__8____251__251__0__0	max_left=205	max_left_minus=205	max_left_plus=148	max_min_left=108	max_min_left_minus=62	max_min_left_plus=108	max_min_right=119	max_min_right_minus=119	max_min_right_plus=95	max_pos_hash_score=480	max_right=241	max_right_minus=233	max_right_plus=241	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=19	polymorphism_frequency=4.005e-01	pos_hash_score=17	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.48	side_1_overlap=8	side_1_possible_overlap_registers=248	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=23	side_2_redundant=0	total_non_overlap_reads=18
JC	400	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=17	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=240	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=237	max_left_minus=234	max_left_plus=237	max_min_left=120	max_min_left_minus=120	max_min_left_plus=112	max_min_right=112	max_min_right_minus=112	max_min_right_plus=111	max_pos_hash_score=480	max_right=233	max_right_minus=222	max_right_plus=233	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.40	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=248	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=31
JC	401	.	NC_000913	257908	1	NC_000913	882215	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__257908__1__NC_000913__882215__-1__0____251__251__1__0	max_left=226	max_left_minus=226	max_left_plus=220	max_min_left=124	max_min_left_minus=124	max_min_left_plus=118	max_min_right=116	max_min_right_minus=116	max_min_right_plus=113	max_pos_hash_score=496	max_right=246	max_right_minus=246	max_right_plus=228	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.40	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=31
JC	402	.	NC_000913	258675	-1	NC_000913	882207	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__258675__-1__NC_000913__882207__1__0____251__251__1__0	max_left=241	max_left_minus=213	max_left_plus=241	max_min_left=111	max_min_left_minus=76	max_min_left_plus=111	max_min_right=123	max_min_right_minus=123	max_min_right_plus=120	max_pos_hash_score=496	max_right=228	max_right_minus=228	max_right_plus=157	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.85	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	403	.	NC_000913	303857	1	NC_000913	381260	1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__303857__1__NC_000913__381260__1__0____251__251__0__1	max_left=220	max_left_minus=205	max_left_plus=220	max_min_left=118	max_min_left_minus=118	max_min_left_plus=96	max_min_right=121	max_min_right_minus=121	max_min_right_plus=104	max_pos_hash_score=496	max_right=217	max_right_minus=204	max_right_plus=217	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=25	polymorphism_frequency=9.608e-01	pos_hash_score=24	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=243	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=25
JC	404	.	NC_000913	303861	-1	NC_000913	382590	-1	0	alignment_overlap=2	coverage_minus=16	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__303863__-1__NC_000913__382590__-1__2____251__251__0__1	max_left=248	max_left_minus=248	max_left_plus=243	max_min_left=121	max_min_left_minus=121	max_min_left_plus=43	max_min_right=113	max_min_right_minus=75	max_min_right_plus=113	max_pos_hash_score=492	max_right=227	max_right_minus=227	max_right_plus=206	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.02	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23
JC	405	.	NC_000913	366180	-1	NC_000913	366274	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__366180__-1__NC_000913__366274__1__0____251__251__0__0	max_left=245	max_left_minus=220	max_left_plus=245	max_min_left=111	max_min_left_minus=109	max_min_left_plus=111	max_min_right=117	max_min_right_minus=117	max_min_right_plus=88	max_pos_hash_score=496	max_right=224	max_right_minus=223	max_right_plus=224	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=248	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=248	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=26
JC	406	.	NC_000913	1293196	1	NC_000913	1300693	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__1293196__1__NC_000913__1300693__-1__0____251__251__0__1	max_left=243	max_left_minus=243	max_left_plus=241	max_min_left=108	max_min_left_minus=108	max_min_left_plus=89	max_min_right=114	max_min_right_minus=114	max_min_right_plus=69	max_pos_hash_score=496	max_right=240	max_right_minus=183	max_right_plus=240	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.55	new_junction_read_count=13	polymorphism_frequency=1.000e+00	pos_hash_score=12	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	407	.	NC_000913	1293199	-1	NC_000913	1299499	1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__1293199__-1__NC_000913__1299499__1__0____251__251__0__1	max_left=214	max_left_minus=214	max_left_plus=205	max_min_left=120	max_min_left_minus=118	max_min_left_plus=120	max_min_right=110	max_min_right_minus=107	max_min_right_plus=110	max_pos_hash_score=496	max_right=186	max_right_minus=184	max_right_plus=186	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.76	new_junction_read_count=18	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=17
JC	408	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=9	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=240	max_left_minus=233	max_left_plus=240	max_min_left=122	max_min_left_minus=100	max_min_left_plus=122	max_min_right=113	max_min_right_minus=113	max_min_right_plus=108	max_pos_hash_score=488	max_right=233	max_right_minus=233	max_right_plus=124	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.69	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=248	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=15
JC	409	.	NC_000913	1397238	-1	NC_000913	1803434	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__1397238__-1__NC_000913__1803434__-1__0____251__251__1__0	max_left=242	max_left_minus=242	max_left_plus=236	max_min_left=124	max_min_left_minus=124	max_min_left_plus=98	max_min_right=121	max_min_right_minus=30	max_min_right_plus=121	max_pos_hash_score=496	max_right=226	max_right_minus=221	max_right_plus=226	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24
JC	410	.	NC_000913	1469240	-1	NC_000913	1590540	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__1469240__-1__NC_000913__1590540__-1__0____251__251__1__0	max_left=224	max_left_minus=222	max_left_plus=224	max_min_left=124	max_min_left_minus=124	max_min_left_plus=105	max_min_right=114	max_min_right_minus=112	max_min_right_plus=114	max_pos_hash_score=496	max_right=248	max_right_minus=223	max_right_plus=248	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=26
JC	411	.	NC_000913	1590536	1	NC_000913	1651548	-1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__1590534__1__NC_000913__1651548__-1__2____251__251__0__1	max_left=239	max_left_minus=230	max_left_plus=239	max_min_left=123	max_min_left_minus=17	max_min_left_plus=123	max_min_right=104	max_min_right_minus=104	max_min_right_plus=79	max_pos_hash_score=492	max_right=248	max_right_minus=248	max_right_plus=218	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=25
JC	412	.	NC_000913	1803431	1	NC_000913	2102943	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__1803431__1__NC_000913__2102943__-1__0____251__251__0__1	max_left=250	max_left_minus=250	max_left_plus=230	max_min_left=121	max_min_left_minus=121	max_min_left_plus=12	max_min_right=123	max_min_right_minus=120	max_min_right_plus=123	max_pos_hash_score=496	max_right=239	max_right_minus=231	max_right_plus=239	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.80	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	413	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=240	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=172	max_min_left=120	max_min_left_minus=114	max_min_left_plus=120	max_min_right=101	max_min_right_minus=74	max_min_right_plus=101	max_pos_hash_score=480	max_right=143	max_right_minus=128	max_right_plus=143	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.39	new_junction_read_count=9	polymorphism_frequency=1.000e+00	pos_hash_score=9	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=248	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9
JC	414	.	NC_000913	1978503	1	NC_000913	4542245	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__1978503__1__NC_000913__4542245__-1__0____251__251__1__0	max_left=239	max_left_minus=220	max_left_plus=239	max_min_left=124	max_min_left_minus=124	max_min_left_plus=119	max_min_right=116	max_min_right_minus=116	max_min_right_plus=83	max_pos_hash_score=496	max_right=249	max_right_minus=249	max_right_plus=241	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.02	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	415	.	NC_000913	2042111	1	NC_000913	2102943	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__2042111__1__NC_000913__2102943__-1__0____251__251__0__1	max_left=213	max_left_minus=213	max_left_plus=208	max_min_left=115	max_min_left_minus=115	max_min_left_plus=102	max_min_right=121	max_min_right_minus=120	max_min_right_plus=121	max_pos_hash_score=496	max_right=244	max_right_minus=244	max_right_plus=156	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.80	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	416	.	NC_000913	2042114	-1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__2042114__-1__NC_000913__2101749__1__0____251__251__0__1	max_left=246	max_left_minus=246	max_left_plus=198	max_min_left=121	max_min_left_minus=121	max_min_left_plus=110	max_min_right=86	max_min_right_minus=85	max_min_right_plus=86	max_pos_hash_score=496	max_right=230	max_right_minus=224	max_right_plus=230	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.85	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19
JC	417	.	NC_000913	2176844	1	NC_000913	4503515	-1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__2176843__1__NC_000913__4503515__-1__1____251__251__0__0	max_left=213	max_left_minus=213	max_left_plus=196	max_min_left=114	max_min_left_minus=90	max_min_left_plus=114	max_min_right=123	max_min_right_minus=99	max_min_right_plus=123	max_pos_hash_score=494	max_right=246	max_right_minus=246	max_right_plus=142	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	read_count_offset=13	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=234	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=20
JC	418	.	NC_000913	2176856	-1	NC_000913	4502090	1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__2176856__-1__NC_000913__4502090__1__0____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=235	max_min_left=121	max_min_left_minus=121	max_min_left_plus=110	max_min_right=120	max_min_right_minus=110	max_min_right_plus=120	max_pos_hash_score=496	max_right=240	max_right_minus=240	max_right_plus=201	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	read_count_offset=13	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=235	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=26
JC	419	.	NC_000913	2238948	1	NC_000913	2514275	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__2238946__1__NC_000913__2514275__1__2____251__251__0__1	max_left=238	max_left_minus=223	max_left_plus=238	max_min_left=114	max_min_left_minus=109	max_min_left_plus=114	max_min_right=107	max_min_right_minus=75	max_min_right_plus=107	max_pos_hash_score=492	max_right=169	max_right_minus=140	max_right_plus=169	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.47	new_junction_read_count=11	polymorphism_frequency=1.000e+00	pos_hash_score=11	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11
JC	420	.	NC_000913	2238953	-1	NC_000913	2515616	-1	0	alignment_overlap=3	coverage_minus=13	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2238956__-1__NC_000913__2515616__-1__3____251__251__0__1	max_left=237	max_left_minus=237	max_left_plus=220	max_min_left=87	max_min_left_minus=87	max_min_left_plus=87	max_min_right=124	max_min_right_minus=93	max_min_right_plus=124	max_pos_hash_score=490	max_right=216	max_right_minus=207	max_right_plus=216	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=3	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23
JC	421	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=17	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=240	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=150	max_min_left=84	max_min_left_minus=84	max_min_left_plus=64	max_min_right=103	max_min_right_minus=80	max_min_right_plus=103	max_pos_hash_score=480	max_right=241	max_right_minus=232	max_right_plus=241	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.05	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=248	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24
JC	422	.	NC_000913	3100838	-1	NC_000913	3130146	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__3100838__-1__NC_000913__3130146__1__0____251__251__0__1	max_left=248	max_left_minus=248	max_left_plus=239	max_min_left=123	max_min_left_minus=123	max_min_left_plus=100	max_min_right=93	max_min_right_minus=75	max_min_right_plus=93	max_pos_hash_score=496	max_right=248	max_right_minus=248	max_right_plus=225	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.31	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=248	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=28
JC	423	.	NC_000913	3186128	1	NC_000913	3486010	1	-74	alignment_overlap=-74	coverage_minus=10	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=174	key=NC_000913__3186128__1__NC_000913__3486010__1__-74__GTCTTAATACTAGTTTTTAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA__251__251__1__0	max_left=165	max_left_minus=165	max_left_plus=66	max_min_left=66	max_min_left_minus=29	max_min_left_plus=66	max_min_right=79	max_min_right_minus=79	max_min_right_plus=0	max_pos_hash_score=348	max_right=167	max_right_minus=167	max_right_plus=111	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.66	new_junction_read_count=11	polymorphism_frequency=1.000e+00	pos_hash_score=10	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=GTCTTAATACTAGTTTTTAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA
JC	424	.	NC_000913	3187426	-1	NC_000913	3486014	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__3187426__-1__NC_000913__3486014__-1__0____251__251__1__0	max_left=233	max_left_minus=203	max_left_plus=233	max_min_left=125	max_min_left_minus=121	max_min_left_plus=125	max_min_right=124	max_min_right_minus=122	max_min_right_plus=124	max_pos_hash_score=496	max_right=241	max_right_minus=241	max_right_plus=224	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=26
JC	425	.	NC_000913	3583428	1	NC_000913	4542237	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__3583428__1__NC_000913__4542237__1__0____251__251__1__0	max_left=245	max_left_minus=245	max_left_plus=234	max_min_left=121	max_min_left_minus=103	max_min_left_plus=121	max_min_right=117	max_min_right_minus=102	max_min_right_plus=117	max_pos_hash_score=496	max_right=250	max_right_minus=250	max_right_plus=237	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	426	.	NC_000913	4000721	1	NC_000913	4503515	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__4000721__1__NC_000913__4503515__-1__0____251__251__0__0	max_left=229	max_left_minus=212	max_left_plus=229	max_min_left=122	max_min_left_minus=111	max_min_left_plus=122	max_min_right=121	max_min_right_minus=95	max_min_right_plus=121	max_pos_hash_score=496	max_right=227	max_right_minus=227	max_right_plus=188	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=12	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=21
JC	427	.	NC_000913	4000732	-1	NC_000913	4502090	1	0	alignment_overlap=3	coverage_minus=9	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__4000732__-1__NC_000913__4502087__1__3____251__251__0__0	max_left=204	max_left_minus=204	max_left_plus=170	max_min_left=111	max_min_left_minus=111	max_min_left_plus=105	max_min_right=115	max_min_right_minus=115	max_min_right_plus=101	max_pos_hash_score=490	max_right=241	max_right_minus=238	max_right_plus=241	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.77	new_junction_read_count=18	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	read_count_offset=12	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=18
JC	428	.	NC_000913	4123617	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__4123617__1__NC_000913__4498181__1__0____251__251__0__1	max_left=242	max_left_minus=242	max_left_plus=239	max_min_left=124	max_min_left_minus=70	max_min_left_plus=124	max_min_right=124	max_min_right_minus=75	max_min_right_plus=124	max_pos_hash_score=496	max_right=245	max_right_minus=245	max_right_plus=205	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=30
JC	429	.	NC_000913	4123621	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=248	key=NC_000913__4123621__-1__NC_000913__4499511__-1__0____251__251__0__1	max_left=221	max_left_minus=221	max_left_plus=221	max_min_left=118	max_min_left_minus=112	max_min_left_plus=118	max_min_right=123	max_min_right_minus=123	max_min_right_plus=75	max_pos_hash_score=496	max_right=246	max_right_minus=246	max_right_plus=246	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=28
JC	430	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=5	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=5.160e-01	junction_possible_overlap_registers=239	key=NC_000913__4542682__1__NC_000913__4542987__1__9____251__251__0__0	max_left=223	max_left_minus=223	max_left_plus=168	max_min_left=110	max_min_left_minus=110	max_min_left_plus=100	max_min_right=105	max_min_right_minus=60	max_min_right_plus=105	max_pos_hash_score=478	max_right=230	max_right_minus=230	max_right_plus=217	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.48	new_junction_read_count=11	polymorphism_frequency=5.160e-01	pos_hash_score=11	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=9	side_1_possible_overlap_registers=248	side_1_read_count=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=11	side_2_redundant=0	total_non_overlap_reads=11
JC	431	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=6	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.160e-01	junction_possible_overlap_registers=239	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____251__251__0__0	max_left=227	max_left_minus=227	max_left_plus=200	max_min_left=114	max_min_left_minus=80	max_min_left_plus=114	max_min_right=114	max_min_right_minus=114	max_min_right_plus=100	max_pos_hash_score=478	max_right=211	max_right_minus=211	max_right_plus=128	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.48	new_junction_read_count=11	polymorphism_frequency=5.160e-01	pos_hash_score=10	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=9	side_1_possible_overlap_registers=248	side_1_read_count=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=11	side_2_redundant=0	total_non_overlap_reads=10
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UN	1149	.	NC_000913	3830325	3830325
UN	1150	.	NC_000913	3862642	3862642
UN	1151	.	NC_000913	3862656	3862678
UN	1152	.	NC_000913	3862681	3862681
UN	1153	.	NC_000913	3862684	3862684
UN	1154	.	NC_000913	3862704	3862704
UN	1155	.	NC_000913	3942153	3943272
UN	1156	.	NC_000913	3943275	3943275
UN	1157	.	NC_000913	3943279	3943279
UN	1158	.	NC_000913	3943283	3943284
UN	1159	.	NC_000913	3943829	3943829
UN	1160	.	NC_000913	3944250	3944261
UN	1161	.	NC_000913	3944263	3944263
UN	1162	.	NC_000913	3944266	3944266
UN	1163	.	NC_000913	3944268	3945401
UN	1164	.	NC_000913	3945403	3945403
UN	1165	.	NC_000913	4035340	4035340
UN	1166	.	NC_000913	4035348	4035348
UN	1167	.	NC_000913	4035352	4036917
UN	1168	.	NC_000913	4036919	4036919
UN	1169	.	NC_000913	4036926	4036926
UN	1170	.	NC_000913	4037496	4037496
UN	1171	.	NC_000913	4038006	4038006
UN	1172	.	NC_000913	4038009	4038009
UN	1173	.	NC_000913	4038012	4038013
UN	1174	.	NC_000913	4038015	4038535
UN	1175	.	NC_000913	4038537	4038537
UN	1176	.	NC_000913	4038920	4038920
UN	1177	.	NC_000913	4038935	4039186
UN	1178	.	NC_000913	4039570	4039570
UN	1179	.	NC_000913	4039574	4039575
UN	1180	.	NC_000913	4039581	4039581
UN	1181	.	NC_000913	4039587	4040409
UN	1182	.	NC_000913	4070451	4070452
UN	1183	.	NC_000913	4070476	4070476
UN	1184	.	NC_000913	4070478	4070478
UN	1185	.	NC_000913	4070483	4070483
UN	1186	.	NC_000913	4087190	4087190
UN	1187	.	NC_000913	4087192	4087192
UN	1188	.	NC_000913	4087196	4087198
UN	1189	.	NC_000913	4087201	4087201
UN	1190	.	NC_000913	4087208	4087208
UN	1191	.	NC_000913	4107878	4107878
UN	1192	.	NC_000913	4137598	4137598
UN	1193	.	NC_000913	4137602	4137602
UN	1194	.	NC_000913	4137607	4137607
UN	1195	.	NC_000913	4166472	4166476
UN	1196	.	NC_000913	4166479	4168025
UN	1197	.	NC_000913	4168759	4168759
UN	1198	.	NC_000913	4168763	4168763
UN	1199	.	NC_000913	4168769	4168769
UN	1200	.	NC_000913	4168772	4168772
UN	1201	.	NC_000913	4168774	4168774
UN	1202	.	NC_000913	4168780	4171508
UN	1203	.	NC_000913	4176722	4176920
UN	1204	.	NC_000913	4176922	4176922
UN	1205	.	NC_000913	4176924	4176928
UN	1206	.	NC_000913	4176935	4176935
UN	1207	.	NC_000913	4208299	4208300
UN	1208	.	NC_000913	4208303	4208303
UN	1209	.	NC_000913	4208310	4209550
UN	1210	.	NC_000913	4209554	4209554
UN	1211	.	NC_000913	4210228	4210228
UN	1212	.	NC_000913	4210238	4210238
UN	1213	.	NC_000913	4210240	4210242
UN	1214	.	NC_000913	4210244	4212925
UN	1215	.	NC_000913	4236070	4236070
UN	1216	.	NC_000913	4275953	4275953
UN	1217	.	NC_000913	4296268	4296268
UN	1218	.	NC_000913	4296286	4296286
UN	1219	.	NC_000913	4498396	4499281
UN	1220	.	NC_000913	4499283	4499286
UN	1221	.	NC_000913	4499288	4499289
UN	1222	.	NC_000913	4499296	4499296
UN	1223	.	NC_000913	4499298	4499298
UN	1224	.	NC_000913	4499300	4499301
UN	1225	.	NC_000913	4507662	4507662
UN	1226	.	NC_000913	4507664	4507667
UN	1227	.	NC_000913	4507669	4507669
UN	1228	.	NC_000913	4507672	4507672
UN	1229	.	NC_000913	4507674	4508489
UN	1230	.	NC_000913	4521394	4521394
UN	1231	.	NC_000913	4538088	4538088
UN	1232	.	NC_000913	4538091	4538092
UN	1233	.	NC_000913	4538095	4538095
UN	1234	.	NC_000913	4538099	4538099
UN	1235	.	NC_000913	4538102	4538102
UN	1236	.	NC_000913	4538106	4538106
UN	1237	.	NC_000913	4538109	4538133
UN	1238	.	NC_000913	4538135	4538143
UN	1239	.	NC_000913	4538145	4538146
UN	1240	.	NC_000913	4538149	4538153
UN	1241	.	NC_000913	4538157	4538159
UN	1242	.	NC_000913	4538162	4538162
UN	1243	.	NC_000913	4635108	4635108