#=GENOME_DIFF	1.0
#=CREATED	10:33:01 29 Nov 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20240527run10/CV72_S6_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20240527run10/CV72_S6_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20240527run10/CV72_S6_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20240527run10/CV72_S6_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20240527run10/CV72_S6_L001_R2_001.fastq.gz
#=CONVERTED-BASES	291175311
#=CONVERTED-READS	1172230
#=INPUT-BASES	291182181
#=INPUT-READS	1172390
#=MAPPED-BASES	274666792
#=MAPPED-READS	1108103
SUB	1	172,173	NC_000913	3645	2	AT
SNP	2	174	NC_000913	71170	C
SNP	3	175	NC_000913	81102	A
SNP	4	176	NC_000913	98060	T
SNP	5	177	NC_000913	108958	T
SNP	6	180	NC_000913	154182	T
SNP	7	181	NC_000913	156068	G
DEL	8	397,408	NC_000913	257908	776
DEL	9	398,412	NC_000913	260187	13768	mediated=IS5
SNP	10	183	NC_000913	284535	G
SNP	11	184	NC_000913	292019	T
SNP	12	185	NC_000913	309381	T
SNP	13	186	NC_000913	309985	A
MOB	14	407,410	NC_000913	362204	IS1	-1	9
MOB	15	414,415	NC_000913	405538	IS186	-1	7	del_end=1	del_start=2
SNP	16	189	NC_000913	410666	T
SNP	17	190	NC_000913	421027	T
MOB	18	409,411	NC_000913	431304	IS1	-1	9
MOB	19	413,416	NC_000913	467310	IS2	-1	5
SNP	20	191	NC_000913	472849	G
SNP	21	192	NC_000913	495622	T
SNP	22	193	NC_000913	534742	A
DEL	23	399,417	NC_000913	575786	43077	mediated=IS5
SNP	24	194	NC_000913	619358	A
SNP	25	195	NC_000913	628998	A
SNP	26	196	NC_000913	630783	A
SNP	27	198	NC_000913	635281	A
SNP	28	199	NC_000913	658024	T
SNP	29	200	NC_000913	694941	A
SNP	30	201	NC_000913	696470	T
SNP	31	203	NC_000913	769388	T
SNP	32	204	NC_000913	780624	T
SNP	33	207	NC_000913	822527	T
SNP	34	208	NC_000913	883396	T
SNP	35	210	NC_000913	908169	T
SNP	36	212	NC_000913	1048787	A
SUB	37	214,215	NC_000913	1123823	2	AG
SNP	38	218	NC_000913	1147792	A
SNP	39	219	NC_000913	1169836	G
SNP	40	220	NC_000913	1189980	G
SNP	41	221	NC_000913	1194922	A
SNP	42	222	NC_000913	1196220	T
SNP	43	223	NC_000913	1196232	T
SNP	44	224	NC_000913	1196245	C
SNP	45	225	NC_000913	1196247	G
SNP	46	226	NC_000913	1196277	T
SNP	47	227	NC_000913	1196280	C
SNP	48	228	NC_000913	1196283	G
SNP	49	229	NC_000913	1196292	T
SNP	50	230	NC_000913	1196304	A
SNP	51	231	NC_000913	1196316	A
SNP	52	232	NC_000913	1196325	G
SNP	53	234	NC_000913	1253002	T
SNP	54	236	NC_000913	1290670	A
DEL	55	401,419	NC_000913	1299499	1199
SNP	56	237	NC_000913	1301992	T
SNP	57	238	NC_000913	1306736	G
SNP	58	239	NC_000913	1308684	C
SNP	59	240	NC_000913	1312434	T
DEL	60	420	NC_000913	1322525	9
SUB	61	247,248	NC_000913	1331059	2	AT
SNP	62	249	NC_000913	1337394	G
SNP	63	250	NC_000913	1358859	C
SNP	64	251	NC_000913	1405758	A
SNP	65	253	NC_000913	1441038	A
SUB	66	254,255,256,257	NC_000913	1497385	4	CAA
MOB	67	422,423	NC_000913	1579695	IS5	1	4
SNP	68	258	NC_000913	1584092	A
MOB	69	421,424	NC_000913	1590536	IS2	1	5
SNP	70	259	NC_000913	1612653	G
SNP	71	260	NC_000913	1629247	T
SNP	72	261	NC_000913	1643679	T
SNP	73	262	NC_000913	1652331	C
SNP	74	263	NC_000913	1667460	A
SNP	75	265	NC_000913	1682459	G
SNP	76	266	NC_000913	1748841	T
SNP	77	268	NC_000913	1767014	T
SUB	78	269,270	NC_000913	1848300	2	TT
SNP	79	271	NC_000913	1849629	C
SNP	80	272	NC_000913	1894839	C
DEL	81	402,425	NC_000913	1978503	776
SNP	82	273	NC_000913	2040433	A
SNP	83	274	NC_000913	2041278	A
SNP	84	275	NC_000913	2052885	A
SNP	85	276	NC_000913	2104024	T
DEL	86	277	NC_000913	2111259	1
SNP	87	278	NC_000913	2142598	A
SNP	88	279	NC_000913	2155197	A
DEL	89	280,281	NC_000913	2173363	2
SNP	90	282	NC_000913	2173448	T
MOB	91	427,428	NC_000913	2176844	IS4	-1	13
SNP	92	284	NC_000913	2233609	T
MOB	93	429,430	NC_000913	2238948	IS186	-1	6	del_end=2	del_start=1
SNP	94	285	NC_000913	2242247	T
SNP	95	286	NC_000913	2247134	C
INS	96	431	NC_000913	2278188	AGACCAGC	repeat_length=8	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=AGACCAGC
SNP	97	287	NC_000913	2307733	T
SUB	98	288,289	NC_000913	2310878	2	TT
SNP	99	290	NC_000913	2404402	A
SNP	100	291	NC_000913	2446592	A
DEL	101	292	NC_000913	2485636	1
SNP	102	293	NC_000913	2485638	A
SNP	103	294	NC_000913	2522369	A
SNP	104	295	NC_000913	2526821	A
DEL	105	403,434	NC_000913	2558699	6790
SNP	106	296	NC_000913	2587112	T
SNP	107	297	NC_000913	2668977	T
SNP	108	298	NC_000913	2702363	A
SNP	109	299	NC_000913	2769820	C
SNP	110	300	NC_000913	2774947	A
SNP	111	301	NC_000913	2867311	T
SNP	112	302	NC_000913	2867455	A
SNP	113	303	NC_000913	2880635	C
SNP	114	306	NC_000913	2926772	A
SNP	115	308	NC_000913	2936855	G
SNP	116	309	NC_000913	2937210	T
SNP	117	310	NC_000913	2938548	T
DEL	118	312	NC_000913	3025601	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	119	314	NC_000913	3070858	G
MOB	120	426,435	NC_000913	3136345	IS1	-1	9
MOB	121	432,433	NC_000913	3206580	IS5	1	4
DEL	122	318	NC_000913	3207549	1
SNP	123	321	NC_000913	3279276	G
SNP	124	322	NC_000913	3296481	A
SNP	125	323	NC_000913	3324965	T
SNP	126	324	NC_000913	3326537	A
SNP	127	325	NC_000913	3329743	T
SNP	128	326	NC_000913	3388041	G
SNP	129	328	NC_000913	3411689	T
SNP	130	329	NC_000913	3433900	T
SNP	131	330	NC_000913	3439485	T
SNP	132	331	NC_000913	3441062	A
SNP	133	333	NC_000913	3474424	G
SNP	134	334	NC_000913	3486502	T
SNP	135	335	NC_000913	3511466	T
SNP	136	336	NC_000913	3520507	A
SNP	137	337	NC_000913	3555047	C
SNP	138	339	NC_000913	3560362	A
INS	139	340	NC_000913	3560455	G
SNP	140	342	NC_000913	3647428	T
SNP	141	343	NC_000913	3707947	A
SNP	142	344	NC_000913	3719429	A
SNP	143	345	NC_000913	3725176	G
SUB	144	346,347	NC_000913	3729440	2	TT
SNP	145	348	NC_000913	3730560	T
SNP	146	350	NC_000913	3770539	T
DEL	147	351	NC_000913	3773173	1
SNP	148	352	NC_000913	3773176	T
INS	149	354	NC_000913	3815883	C
SNP	150	356	NC_000913	3925834	T
SNP	151	357	NC_000913	3926991	A
SUB	152	358,359	NC_000913	3966530	2	TT
SNP	153	360	NC_000913	4003502	T
MOB	154	438,439	NC_000913	4123617	IS2	-1	5
SNP	155	368	NC_000913	4150418	G
SNP	156	371	NC_000913	4193996	G
SNP	157	372	NC_000913	4217310	G
SNP	158	374	NC_000913	4223638	C
INS	159	376,377	NC_000913	4296381	GC
SNP	160	378	NC_000913	4325644	T
SNP	161	379	NC_000913	4331890	T
SNP	162	382	NC_000913	4368641	T
SNP	163	383	NC_000913	4437890	T
SNP	164	387	NC_000913	4473900	T
SNP	165	388	NC_000913	4475493	C
SNP	166	389	NC_000913	4476605	A
SNP	167	390	NC_000913	4489016	T
SNP	168	391	NC_000913	4510238	G
MOB	169	436,437	NC_000913	4542042	IS1	1	8
SNP	170	393	NC_000913	4562396	G
SNP	171	394	NC_000913	4598984	A
RA	172	.	NC_000913	3645	0	G	A	consensus_score=127.3	frequency=1	major_base=A	major_cov=7/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/31
RA	173	.	NC_000913	3646	0	G	T	consensus_score=131.7	frequency=1	major_base=T	major_cov=7/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/31
RA	174	.	NC_000913	71170	0	T	C	consensus_score=214.0	frequency=1	major_base=C	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	175	.	NC_000913	81102	0	G	A	consensus_score=163.4	frequency=1	major_base=A	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	176	.	NC_000913	98060	0	G	T	consensus_score=306.6	frequency=1	major_base=T	major_cov=46/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/40
RA	177	.	NC_000913	108958	0	G	T	consensus_score=272.1	frequency=1	major_base=T	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	178	.	NC_000913	112289	0	G	A	bias_e_value=55.0674	bias_p_value=1.18638e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.3	fisher_strand_p_value=7.88098e-07	frequency=2.632e-01	ks_quality_p_value=1	major_base=G	major_cov=30/12	major_frequency=7.368e-01	minor_base=A	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.632e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=30/12	total_cov=30/27
RA	179	.	NC_000913	119396	0	C	T	bias_e_value=24.3131	bias_p_value=5.23803e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.6	fisher_strand_p_value=3.28865e-07	frequency=2.154e-01	ks_quality_p_value=1	major_base=C	major_cov=13/38	major_frequency=7.846e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.154e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=13/38	total_cov=27/38
RA	180	.	NC_000913	154182	0	C	T	consensus_score=100.2	frequency=1	major_base=T	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	181	.	NC_000913	156068	0	A	G	consensus_score=153.6	frequency=1	major_base=G	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	182	.	NC_000913	213341	0	A	G	bias_e_value=0.00045029	bias_p_value=9.70107e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.1	fisher_strand_p_value=3.545e-12	frequency=2.581e-01	ks_quality_p_value=1	major_base=A	major_cov=3/43	major_frequency=7.419e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.581e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=3/43	total_cov=19/43
RA	183	.	NC_000913	284535	0	T	G	consensus_score=305.4	frequency=1	major_base=G	major_cov=31/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/56
RA	184	.	NC_000913	292019	0	C	T	consensus_score=293.7	frequency=1	major_base=T	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	185	.	NC_000913	309381	0	C	T	consensus_score=264.6	frequency=1	major_base=T	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	186	.	NC_000913	309985	0	T	A	consensus_score=215.2	frequency=1	major_base=A	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	187	.	NC_000913	345328	0	C	A	bias_e_value=211.013	bias_p_value=4.54607e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.5	fisher_strand_p_value=3.34038e-06	frequency=3.243e-01	ks_quality_p_value=1	major_base=C	major_cov=20/5	major_frequency=6.757e-01	minor_base=A	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=3.243e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=20/5	total_cov=20/17
RA	188	.	NC_000913	375621	0	A	G	bias_e_value=1.76517	bias_p_value=3.8029e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.0	fisher_strand_p_value=2.03239e-08	frequency=2.571e-01	ks_quality_p_value=1	major_base=A	major_cov=14/38	major_frequency=7.429e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.571e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=14/38	total_cov=33/38
RA	189	.	NC_000913	410666	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=245.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/43	major_frequency=9.867e-01	minor_base=G	minor_cov=0/1	new_cov=31/43	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	190	.	NC_000913	421027	0	C	T	bias_e_value=3580320	bias_p_value=0.771345	consensus_score=247.2	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=0.984321	major_base=T	major_cov=40/27	major_frequency=9.853e-01	minor_base=G	minor_cov=0/1	new_cov=40/27	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/28
RA	191	.	NC_000913	472849	0	A	G	consensus_score=252.4	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	192	.	NC_000913	495622	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=249.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998296	major_base=T	major_cov=29/39	major_frequency=9.855e-01	minor_base=G	minor_cov=0/1	new_cov=29/39	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/40
RA	193	.	NC_000913	534742	0	G	A	bias_e_value=3526680	bias_p_value=0.75979	consensus_score=202.5	fisher_strand_p_value=0.396552	frequency=1	ks_quality_p_value=0.990367	major_base=A	major_cov=35/22	major_frequency=9.828e-01	minor_base=G	minor_cov=0/1	new_cov=35/22	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=35/23
RA	194	.	NC_000913	619358	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=211.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999548	major_base=A	major_cov=35/31	major_frequency=9.851e-01	minor_base=C	minor_cov=1/0	new_cov=35/31	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	195	.	NC_000913	628998	0	G	A	bias_e_value=4624410	bias_p_value=0.996286	consensus_score=153.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.915058	major_base=A	major_cov=9/37	major_frequency=9.583e-01	minor_base=G	minor_cov=0/2	new_cov=9/37	polymorphism_frequency=9.583e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/2	total_cov=9/40
RA	196	.	NC_000913	630783	0	G	A	bias_e_value=1265150	bias_p_value=0.272564	consensus_score=219.7	fisher_strand_p_value=0.076276	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=26/38	major_frequency=9.552e-01	minor_base=G	minor_cov=3/0	new_cov=26/38	polymorphism_frequency=9.552e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=3/0	total_cov=29/38
RA	197	.	NC_000913	634315	0	A	G	bias_e_value=14.3658	bias_p_value=3.09498e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.5	fisher_strand_p_value=1.87707e-07	frequency=2.545e-01	ks_quality_p_value=1	major_base=A	major_cov=9/32	major_frequency=7.455e-01	minor_base=G	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.545e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=9/32	total_cov=23/32
RA	198	.	NC_000913	635281	0	G	A	consensus_score=168.6	frequency=1	major_base=A	major_cov=21/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	199	.	NC_000913	658024	0	G	T	consensus_score=207.7	frequency=1	major_base=T	major_cov=35/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/22
RA	200	.	NC_000913	694941	0	G	A	consensus_score=228.1	frequency=1	major_base=A	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	201	.	NC_000913	696470	0	C	T	bias_e_value=4488710	bias_p_value=0.96705	consensus_score=153.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.754525	major_base=T	major_cov=26/22	major_frequency=9.600e-01	minor_base=C	minor_cov=1/1	new_cov=26/22	polymorphism_frequency=9.600e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/1	total_cov=27/24
RA	202	.	NC_000913	728024	0	T	A	bias_e_value=112.562	bias_p_value=2.42503e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.9	fisher_strand_p_value=1.69744e-06	frequency=2.759e-01	ks_quality_p_value=1	major_base=T	major_cov=29/13	major_frequency=7.241e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.759e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=29/13	total_cov=29/29
RA	203	.	NC_000913	769388	0	A	T	consensus_score=197.5	frequency=1	major_base=T	major_cov=22/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/30
RA	204	.	NC_000913	780624	0	C	T	bias_e_value=3890910	bias_p_value=0.838259	consensus_score=197.7	fisher_strand_p_value=0.493648	frequency=1	ks_quality_p_value=0.988977	major_base=T	major_cov=29/27	major_frequency=9.655e-01	minor_base=C	minor_cov=2/0	new_cov=29/27	polymorphism_frequency=9.655e-01	polymorphism_score=-6.8	prediction=consensus	ref_cov=2/0	total_cov=32/27
RA	205	.	NC_000913	786791	0	C	A	bias_e_value=872.006	bias_p_value=0.000187865	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.1	fisher_strand_p_value=1.55639e-05	frequency=2.027e-01	ks_quality_p_value=1	major_base=C	major_cov=35/24	major_frequency=7.973e-01	minor_base=A	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.027e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=35/24	total_cov=35/39
RA	206	.	NC_000913	786855	0	A	C	bias_e_value=1.37906e-05	bias_p_value=2.97105e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.4	fisher_strand_p_value=9.59169e-14	frequency=3.913e-01	ks_quality_p_value=1	major_base=A	major_cov=38/4	major_frequency=6.087e-01	minor_base=C	minor_cov=1/26	new_cov=1/26	polymorphism_frequency=3.913e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=38/4	total_cov=39/31
RA	207	.	NC_000913	822527	0	C	T	consensus_score=205.5	frequency=1	major_base=T	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	208	.	NC_000913	883396	0	C	T	consensus_score=142.6	frequency=1	major_base=T	major_cov=13/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/30
RA	209	.	NC_000913	891031	0	C	T	bias_e_value=1.01872	bias_p_value=2.19474e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.9	fisher_strand_p_value=1.21088e-08	frequency=2.885e-01	ks_quality_p_value=0.939535	major_base=C	major_cov=6/31	major_frequency=7.115e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.885e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=6/31	total_cov=21/31
RA	210	.	NC_000913	908169	0	C	T	bias_e_value=3909990	bias_p_value=0.84237	consensus_score=284.8	fisher_strand_p_value=0.493987	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/39	major_frequency=9.750e-01	minor_base=G	minor_cov=0/2	new_cov=39/39	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	211	.	NC_000913	941713	0	T	G	bias_e_value=0.266962	bias_p_value=5.75144e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.6	fisher_strand_p_value=2.77828e-09	frequency=3.488e-01	ks_quality_p_value=1	major_base=T	major_cov=1/27	major_frequency=6.512e-01	minor_base=G	minor_cov=14/1	new_cov=14/1	polymorphism_frequency=3.488e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=1/27	total_cov=15/28
RA	212	.	NC_000913	1048787	0	G	A	bias_e_value=4641620	bias_p_value=0.999993	consensus_score=169.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996143	major_base=A	major_cov=21/24	major_frequency=9.783e-01	minor_base=C	minor_cov=0/1	new_cov=21/24	polymorphism_frequency=9.783e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	213	.	NC_000913	1121464	0	C	T	bias_e_value=3721.14	bias_p_value=0.000801685	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.4	fisher_strand_p_value=7.65106e-05	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=7/19	major_frequency=7.222e-01	minor_base=T	minor_cov=10/0	new_cov=10/0	polymorphism_frequency=2.778e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=7/19	total_cov=18/19
RA	214	.	NC_000913	1123823	0	G	A	bias_e_value=3798710	bias_p_value=0.818395	consensus_score=188.8	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=23/28	major_frequency=9.808e-01	minor_base=G	minor_cov=1/0	new_cov=23/28	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=24/28
RA	215	.	NC_000913	1123824	0	T	G	bias_e_value=3767390	bias_p_value=0.811649	consensus_score=194.9	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=0.981323	major_base=G	major_cov=23/28	major_frequency=9.808e-01	minor_base=.	minor_cov=1/0	new_cov=23/28	polymorphism_frequency=9.808e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	216	.	NC_000913	1130342	0	A	C	bias_e_value=203.345	bias_p_value=4.38087e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.4	fisher_strand_p_value=3.20958e-06	frequency=3.818e-01	ks_quality_p_value=1	major_base=A	major_cov=23/11	major_frequency=6.182e-01	minor_base=C	minor_cov=1/20	new_cov=1/20	polymorphism_frequency=3.818e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=23/11	total_cov=24/31
RA	217	.	NC_000913	1130374	0	C	T	bias_e_value=12649.9	bias_p_value=0.00272531	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.8	fisher_strand_p_value=0.000302158	frequency=2.373e-01	ks_quality_p_value=0.989509	major_base=C	major_cov=24/21	major_frequency=7.627e-01	minor_base=T	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.373e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=24/21	total_cov=24/35
RA	218	.	NC_000913	1147792	0	T	A	consensus_score=175.2	frequency=1	major_base=A	major_cov=31/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/19
RA	219	.	NC_000913	1169836	0	A	G	consensus_score=177.9	frequency=1	major_base=G	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	220	.	NC_000913	1189980	0	A	G	consensus_score=174.0	frequency=1	major_base=G	major_cov=18/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/27
RA	221	.	NC_000913	1194922	0	G	A	consensus_score=162.0	frequency=1	major_base=A	major_cov=18/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/25
RA	222	.	NC_000913	1196220	0	C	T	consensus_score=76.9	frequency=1	major_base=T	major_cov=8/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/21
RA	223	.	NC_000913	1196232	0	C	T	consensus_score=72.7	frequency=1	major_base=T	major_cov=8/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/20
RA	224	.	NC_000913	1196245	0	T	C	consensus_score=67.3	frequency=1	major_base=C	major_cov=8/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/18
RA	225	.	NC_000913	1196247	0	A	G	consensus_score=65.9	frequency=1	major_base=G	major_cov=8/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/18
RA	226	.	NC_000913	1196277	0	C	T	consensus_score=53.5	frequency=1	major_base=T	major_cov=7/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/16
RA	227	.	NC_000913	1196280	0	G	C	consensus_score=52.8	frequency=1	major_base=C	major_cov=7/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/16
RA	228	.	NC_000913	1196283	0	A	G	consensus_score=48.4	frequency=1	major_base=G	major_cov=7/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/16
RA	229	.	NC_000913	1196292	0	C	T	consensus_score=50.3	frequency=1	major_base=T	major_cov=7/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/16
RA	230	.	NC_000913	1196304	0	G	A	consensus_score=44.2	frequency=1	major_base=A	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	231	.	NC_000913	1196316	0	T	A	consensus_score=35.7	frequency=1	major_base=A	major_cov=5/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/13
RA	232	.	NC_000913	1196325	0	A	G	consensus_score=34.4	frequency=1	major_base=G	major_cov=5/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/13
RA	233	.	NC_000913	1196352	0	C	A	consensus_score=16.0	deleted=1	frequency=1	major_base=A	major_cov=2/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/8
RA	234	.	NC_000913	1253002	0	C	T	consensus_score=187.0	frequency=1	major_base=T	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	235	.	NC_000913	1260888	0	C	A	bias_e_value=242.525	bias_p_value=5.22498e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.5	fisher_strand_p_value=3.8821e-06	frequency=2.167e-01	ks_quality_p_value=1	major_base=C	major_cov=33/14	major_frequency=7.833e-01	minor_base=A	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.167e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=33/14	total_cov=33/27
RA	236	.	NC_000913	1290670	0	G	A	consensus_score=92.5	frequency=1	major_base=A	major_cov=20/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/7
RA	237	.	NC_000913	1301992	0	A	T	consensus_score=172.9	frequency=1	major_base=T	major_cov=33/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/14
RA	238	.	NC_000913	1306736	0	T	G	consensus_score=98.1	frequency=1	major_base=G	major_cov=9/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/20
RA	239	.	NC_000913	1308684	0	T	C	consensus_score=190.5	frequency=1	major_base=C	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	240	.	NC_000913	1312434	0	C	T	bias_e_value=3851240	bias_p_value=0.829713	consensus_score=169.8	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.99268	major_base=T	major_cov=23/26	major_frequency=9.800e-01	minor_base=C	minor_cov=1/0	new_cov=23/26	polymorphism_frequency=9.800e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=24/26
RA	241	.	NC_000913	1322527	0	T	.	consensus_score=12.7	deleted=1	frequency=1	major_base=.	major_cov=0/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=0/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=0/4
RA	242	.	NC_000913	1322528	0	T	.	consensus_score=12.7	deleted=1	frequency=1	major_base=.	major_cov=0/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=0/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=0/4
RA	243	.	NC_000913	1322531	0	T	.	consensus_score=12.7	deleted=1	frequency=1	major_base=.	major_cov=0/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=0/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=0/4
RA	244	.	NC_000913	1322532	0	C	.	consensus_score=12.7	deleted=1	frequency=1	major_base=.	major_cov=0/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=0/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=0/4
RA	245	.	NC_000913	1322533	0	C	.	consensus_score=12.7	deleted=1	frequency=1	major_base=.	major_cov=0/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=0/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=0/4
RA	246	.	NC_000913	1328465	0	T	G	bias_e_value=0.438443	bias_p_value=9.44585e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.2	fisher_strand_p_value=4.68085e-09	frequency=3.385e-01	ks_quality_p_value=1	major_base=T	major_cov=12/31	major_frequency=6.615e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.385e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=12/31	total_cov=34/31
RA	247	.	NC_000913	1331059	0	T	A	consensus_score=190.1	frequency=1	major_base=A	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	248	.	NC_000913	1331060	0	C	T	consensus_score=193.6	frequency=1	major_base=T	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	249	.	NC_000913	1337394	0	A	G	consensus_score=175.6	frequency=1	major_base=G	major_cov=26/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/22
RA	250	.	NC_000913	1358859	0	T	C	bias_e_value=4360610	bias_p_value=0.939453	consensus_score=183.9	fisher_strand_p_value=0.672845	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/30	major_frequency=9.118e-01	minor_base=A	minor_cov=2/4	new_cov=32/30	polymorphism_frequency=9.118e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	251	.	NC_000913	1405758	0	G	A	consensus_score=188.2	frequency=1	major_base=A	major_cov=21/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/29
RA	252	.	NC_000913	1435727	0	G	A	bias_e_value=26.7056	bias_p_value=5.75347e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.9	fisher_strand_p_value=3.63512e-07	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=21/3	major_frequency=6.667e-01	minor_base=A	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=3.333e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=21/3	total_cov=21/15
RA	253	.	NC_000913	1441038	0	G	A	bias_e_value=60060.6	bias_p_value=0.0129395	consensus_score=124.0	fisher_strand_p_value=0.00176265	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/26	major_frequency=8.302e-01	minor_base=T	minor_cov=9/0	new_cov=18/26	polymorphism_frequency=8.302e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	254	.	NC_000913	1497385	0	T	C	consensus_score=140.1	frequency=1	major_base=C	major_cov=18/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/20
RA	255	.	NC_000913	1497386	0	T	.	consensus_score=175.8	frequency=1	major_base=.	major_cov=18/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/20
RA	256	.	NC_000913	1497387	0	C	A	consensus_score=136.3	frequency=1	major_base=A	major_cov=18/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/20
RA	257	.	NC_000913	1497388	0	T	A	consensus_score=129.7	frequency=1	major_base=A	major_cov=18/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/20
RA	258	.	NC_000913	1584092	0	G	A	consensus_score=142.5	frequency=1	major_base=A	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	259	.	NC_000913	1612653	0	A	G	consensus_score=192.4	frequency=1	major_base=G	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	260	.	NC_000913	1629247	0	C	T	consensus_score=154.4	frequency=1	major_base=T	major_cov=16/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/26
RA	261	.	NC_000913	1643679	0	A	T	consensus_score=211.8	frequency=1	major_base=T	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	262	.	NC_000913	1652331	0	T	C	bias_e_value=4635180	bias_p_value=0.998606	consensus_score=104.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.947656	major_base=C	major_cov=19/11	major_frequency=9.677e-01	minor_base=A	minor_cov=1/0	new_cov=19/11	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/11
RA	263	.	NC_000913	1667460	0	G	A	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=96.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99754	major_base=A	major_cov=15/13	major_frequency=9.655e-01	minor_base=C	minor_cov=1/0	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	264	.	NC_000913	1679304	0	A	C	bias_e_value=1509.03	bias_p_value=0.000325107	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.1	fisher_strand_p_value=2.83411e-05	frequency=3.636e-01	ks_quality_p_value=1	major_base=A	major_cov=20/8	major_frequency=6.364e-01	minor_base=C	minor_cov=1/15	new_cov=1/15	polymorphism_frequency=3.636e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=20/8	total_cov=21/23
RA	265	.	NC_000913	1682459	0	A	G	consensus_score=162.1	frequency=1	major_base=G	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	266	.	NC_000913	1748841	0	C	T	consensus_score=266.7	frequency=1	major_base=T	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	267	.	NC_000913	1755871	0	T	A	bias_e_value=7.10623	bias_p_value=1.53097e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.3	fisher_strand_p_value=8.88206e-08	frequency=2.500e-01	ks_quality_p_value=1	major_base=T	major_cov=31/5	major_frequency=7.500e-01	minor_base=A	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=2.500e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=31/5	total_cov=31/17
RA	268	.	NC_000913	1767014	0	C	T	consensus_score=223.1	frequency=1	major_base=T	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	269	.	NC_000913	1848300	0	C	T	consensus_score=254.8	frequency=1	major_base=T	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	270	.	NC_000913	1848301	0	C	T	consensus_score=244.2	frequency=1	major_base=T	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	271	.	NC_000913	1849629	0	T	C	consensus_score=230.9	frequency=1	major_base=C	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	272	.	NC_000913	1894839	0	T	C	consensus_score=180.1	frequency=1	major_base=C	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	273	.	NC_000913	2040433	0	C	A	consensus_score=209.7	frequency=1	major_base=A	major_cov=35/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/23
RA	274	.	NC_000913	2041278	0	G	A	consensus_score=147.9	frequency=1	major_base=A	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	275	.	NC_000913	2052885	0	G	A	consensus_score=140.6	frequency=1	major_base=A	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	276	.	NC_000913	2104024	0	G	T	consensus_score=89.0	frequency=1	major_base=T	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	277	.	NC_000913	2111259	0	G	.	consensus_score=227.2	frequency=1	major_base=.	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	278	.	NC_000913	2142598	0	G	A	consensus_score=183.2	frequency=1	major_base=A	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	279	.	NC_000913	2155197	0	G	A	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=235.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998079	major_base=A	major_cov=28/36	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=28/36	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/37
RA	280	.	NC_000913	2173363	0	C	.	bias_e_value=936955	bias_p_value=0.201858	consensus_score=197.4	fisher_strand_p_value=0.0560245	frequency=1	ks_quality_p_value=0.904837	major_base=.	major_cov=29/16	major_frequency=9.375e-01	minor_base=C	minor_cov=0/3	new_cov=29/16	polymorphism_frequency=9.375e-01	polymorphism_score=6.7	prediction=consensus	ref_cov=0/3	total_cov=29/19
RA	281	.	NC_000913	2173364	0	C	.	bias_e_value=1009490	bias_p_value=0.217485	consensus_score=198.3	fisher_strand_p_value=0.0560245	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=29/16	major_frequency=9.375e-01	minor_base=C	minor_cov=0/3	new_cov=29/16	polymorphism_frequency=9.375e-01	polymorphism_score=3.5	prediction=consensus	ref_cov=0/3	total_cov=29/19
RA	282	.	NC_000913	2173448	0	C	T	consensus_score=198.8	frequency=1	major_base=T	major_cov=27/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	283	.	NC_000913	2185199	0	T	G	bias_e_value=0.00266357	bias_p_value=5.73841e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.6	fisher_strand_p_value=2.24876e-11	frequency=2.857e-01	ks_quality_p_value=1	major_base=T	major_cov=11/49	major_frequency=7.143e-01	minor_base=G	minor_cov=23/1	new_cov=23/1	polymorphism_frequency=2.857e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=11/49	total_cov=35/50
RA	284	.	NC_000913	2233609	0	C	T	consensus_score=167.2	frequency=1	major_base=T	major_cov=16/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/30
RA	285	.	NC_000913	2242247	0	C	T	consensus_score=269.5	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	286	.	NC_000913	2247134	0	A	C	consensus_score=204.7	frequency=1	major_base=C	major_cov=34/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/20
RA	287	.	NC_000913	2307733	0	C	T	bias_e_value=771603	bias_p_value=0.166234	consensus_score=201.9	fisher_strand_p_value=0.0392193	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/28	major_frequency=9.429e-01	minor_base=G	minor_cov=0/4	new_cov=38/28	polymorphism_frequency=9.429e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=39/34
RA	288	.	NC_000913	2310878	0	A	T	consensus_score=227.6	frequency=1	major_base=T	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	289	.	NC_000913	2310879	0	C	T	consensus_score=231.3	frequency=1	major_base=T	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	290	.	NC_000913	2404402	0	G	A	consensus_score=292.6	frequency=1	major_base=A	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	291	.	NC_000913	2446592	0	C	A	consensus_score=233.2	frequency=1	major_base=A	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	292	.	NC_000913	2485636	0	A	.	consensus_score=134.9	frequency=1	major_base=.	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	293	.	NC_000913	2485638	0	T	A	consensus_score=108.7	frequency=1	major_base=A	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	294	.	NC_000913	2522369	0	G	A	consensus_score=210.6	frequency=1	major_base=A	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	295	.	NC_000913	2526821	0	G	A	bias_e_value=3772240	bias_p_value=0.812694	consensus_score=202.6	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.999327	major_base=A	major_cov=24/30	major_frequency=9.818e-01	minor_base=T	minor_cov=1/0	new_cov=24/30	polymorphism_frequency=9.818e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	296	.	NC_000913	2587112	0	C	T	bias_e_value=3967020	bias_p_value=0.854658	consensus_score=200.9	fisher_strand_p_value=0.511864	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/24	major_frequency=9.667e-01	minor_base=A	minor_cov=2/0	new_cov=34/24	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/25
RA	297	.	NC_000913	2668977	0	C	T	consensus_score=176.8	frequency=1	major_base=T	major_cov=27/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	298	.	NC_000913	2702363	0	G	A	bias_e_value=3623520	bias_p_value=0.780654	consensus_score=290.6	fisher_strand_p_value=0.433735	frequency=1	ks_quality_p_value=0.958567	major_base=A	major_cov=35/47	major_frequency=9.880e-01	minor_base=C	minor_cov=1/0	new_cov=35/47	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/47
RA	299	.	NC_000913	2769820	0	T	C	consensus_score=217.2	frequency=1	major_base=C	major_cov=33/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	300	.	NC_000913	2774947	0	G	A	consensus_score=110.2	frequency=1	major_base=A	major_cov=19/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/11
RA	301	.	NC_000913	2867311	0	G	T	bias_e_value=3481010	bias_p_value=0.749951	consensus_score=213.1	fisher_strand_p_value=0.382353	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/42	major_frequency=9.853e-01	minor_base=G	minor_cov=1/0	new_cov=25/42	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=27/42
RA	302	.	NC_000913	2867455	0	G	A	bias_e_value=3806680	bias_p_value=0.820114	consensus_score=246.0	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/37	major_frequency=9.855e-01	minor_base=T	minor_cov=1/0	new_cov=31/37	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	303	.	NC_000913	2880635	0	T	C	consensus_score=148.0	frequency=1	major_base=C	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	304	.	NC_000913	2889468	0	T	G	bias_e_value=0.000106443	bias_p_value=2.29321e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.1	fisher_strand_p_value=7.94571e-13	frequency=3.506e-01	ks_quality_p_value=1	major_base=T	major_cov=10/40	major_frequency=6.494e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.506e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=10/40	total_cov=40/40
RA	305	.	NC_000913	2896475	0	A	C	bias_e_value=18.5697	bias_p_value=4.00066e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.7	fisher_strand_p_value=2.46726e-07	frequency=3.455e-01	ks_quality_p_value=1	major_base=A	major_cov=25/11	major_frequency=6.545e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.455e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=25/11	total_cov=25/30
RA	306	.	NC_000913	2926772	0	C	A	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=209.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997583	major_base=A	major_cov=26/31	major_frequency=9.828e-01	minor_base=C	minor_cov=0/1	new_cov=26/31	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=26/32
RA	307	.	NC_000913	2930047	0	G	T	bias_e_value=1154.3	bias_p_value=0.000248683	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.4	fisher_strand_p_value=2.13018e-05	frequency=2.192e-01	ks_quality_p_value=0.992339	major_base=G	major_cov=19/38	major_frequency=7.808e-01	minor_base=T	minor_cov=15/1	new_cov=15/1	polymorphism_frequency=2.192e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=19/38	total_cov=34/39
RA	308	.	NC_000913	2936855	0	T	G	consensus_score=324.7	frequency=1	major_base=G	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	309	.	NC_000913	2937210	0	C	T	bias_e_value=4641450	bias_p_value=0.999957	consensus_score=254.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990787	major_base=T	major_cov=30/43	major_frequency=9.865e-01	minor_base=G	minor_cov=0/1	new_cov=30/43	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	310	.	NC_000913	2938548	0	A	T	bias_e_value=4641630	bias_p_value=0.999996	consensus_score=172.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997101	major_base=T	major_cov=25/27	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=25/27	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	311	.	NC_000913	3016533	0	T	A	bias_e_value=6.11679	bias_p_value=1.31781e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.1	fisher_strand_p_value=7.57544e-08	frequency=2.131e-01	ks_quality_p_value=1	major_base=T	major_cov=39/9	major_frequency=7.869e-01	minor_base=A	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.131e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=39/9	total_cov=39/22
RA	312	.	NC_000913	3025601	0	T	.	consensus_score=171.0	frequency=1	major_base=.	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	313	.	NC_000913	3054273	0	C	T	bias_e_value=0.494506	bias_p_value=1.06537e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.3	fisher_strand_p_value=5.31271e-09	frequency=2.055e-01	ks_quality_p_value=1	major_base=C	major_cov=11/47	major_frequency=7.945e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.055e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=11/47	total_cov=26/47
RA	314	.	NC_000913	3070858	0	T	G	consensus_score=262.4	frequency=1	major_base=G	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	315	.	NC_000913	3108399	0	T	A	bias_e_value=21.5394	bias_p_value=4.64046e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.8	fisher_strand_p_value=2.89002e-07	frequency=2.273e-01	ks_quality_p_value=1	major_base=T	major_cov=37/14	major_frequency=7.727e-01	minor_base=A	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.273e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=37/14	total_cov=37/30
RA	316	.	NC_000913	3135781	0	G	T	bias_e_value=0.12236	bias_p_value=2.63614e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.7	fisher_strand_p_value=1.22495e-09	frequency=2.532e-01	ks_quality_p_value=1	major_base=G	major_cov=15/44	major_frequency=7.468e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.532e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=15/44	total_cov=35/44
RA	317	.	NC_000913	3177748	0	C	A	bias_e_value=740.758	bias_p_value=0.000159589	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.3	fisher_strand_p_value=1.30295e-05	frequency=3.750e-01	ks_quality_p_value=1	major_base=C	major_cov=21/9	major_frequency=6.250e-01	minor_base=A	minor_cov=1/17	new_cov=1/17	polymorphism_frequency=3.750e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=21/9	total_cov=22/31
RA	318	.	NC_000913	3207549	0	G	.	consensus_score=300.2	frequency=1	major_base=.	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	319	.	NC_000913	3270455	0	G	T	bias_e_value=3580.89	bias_p_value=0.000771468	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.9	fisher_strand_p_value=9.66678e-05	frequency=3.684e-01	ks_quality_p_value=0.758573	major_base=G	major_cov=9/15	major_frequency=6.316e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=3.684e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=9/15	total_cov=23/15
RA	320	.	NC_000913	3270478	1	.	G	bias_e_value=281386	bias_p_value=0.0606219	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.4	fisher_strand_p_value=0.011403	frequency=2.222e-01	ks_quality_p_value=0.964916	major_base=.	major_cov=13/15	major_frequency=7.778e-01	minor_base=G	minor_cov=8/0	new_cov=8/0	polymorphism_frequency=2.222e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=13/15	total_cov=21/15
RA	321	.	NC_000913	3279276	0	C	G	bias_e_value=4640570	bias_p_value=0.999768	consensus_score=239.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.978515	major_base=G	major_cov=36/29	major_frequency=9.559e-01	minor_base=T	minor_cov=2/1	new_cov=36/29	polymorphism_frequency=9.559e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	322	.	NC_000913	3296481	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=317.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/43	major_frequency=9.884e-01	minor_base=G	minor_cov=1/0	new_cov=42/43	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=43/43
RA	323	.	NC_000913	3324965	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=224.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/28	major_frequency=9.841e-01	minor_base=C	minor_cov=1/0	new_cov=34/28	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/28
RA	324	.	NC_000913	3326537	0	C	A	bias_e_value=3683410	bias_p_value=0.793556	consensus_score=235.0	fisher_strand_p_value=0.430769	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/37	major_frequency=9.846e-01	minor_base=C	minor_cov=1/0	new_cov=27/37	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=28/37
RA	325	.	NC_000913	3329743	0	G	T	consensus_score=240.2	frequency=1	major_base=T	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	326	.	NC_000913	3388041	0	T	G	consensus_score=219.5	frequency=1	major_base=G	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	327	.	NC_000913	3397538	0	C	T	bias_e_value=1.44733	bias_p_value=3.11814e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.2	fisher_strand_p_value=1.64797e-08	frequency=2.586e-01	ks_quality_p_value=1	major_base=C	major_cov=35/8	major_frequency=7.414e-01	minor_base=T	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.586e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=35/8	total_cov=35/24
RA	328	.	NC_000913	3411689	0	G	T	bias_e_value=4641260	bias_p_value=0.999915	consensus_score=162.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.987024	major_base=T	major_cov=23/26	major_frequency=9.800e-01	minor_base=G	minor_cov=0/1	new_cov=23/26	polymorphism_frequency=9.800e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=23/27
RA	329	.	NC_000913	3433900	0	C	T	bias_e_value=4641510	bias_p_value=0.999969	consensus_score=226.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992095	major_base=T	major_cov=36/27	major_frequency=9.844e-01	minor_base=G	minor_cov=1/0	new_cov=36/27	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	330	.	NC_000913	3439485	0	C	T	consensus_score=120.9	frequency=1	major_base=T	major_cov=14/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/20
RA	331	.	NC_000913	3441062	0	G	A	consensus_score=307.6	frequency=1	major_base=A	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	332	.	NC_000913	3465179	0	T	G	bias_e_value=2.12189	bias_p_value=4.57142e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.5	fisher_strand_p_value=2.46877e-08	frequency=2.683e-01	ks_quality_p_value=1	major_base=T	major_cov=2/28	major_frequency=7.317e-01	minor_base=G	minor_cov=11/0	new_cov=11/0	polymorphism_frequency=2.683e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=2/28	total_cov=15/28
RA	333	.	NC_000913	3474424	0	T	G	consensus_score=280.5	frequency=1	major_base=G	major_cov=44/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/31
RA	334	.	NC_000913	3486502	0	C	T	consensus_score=206.0	frequency=1	major_base=T	major_cov=29/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/26
RA	335	.	NC_000913	3511466	0	C	T	bias_e_value=3907320	bias_p_value=0.841795	consensus_score=284.7	fisher_strand_p_value=0.493506	frequency=1	ks_quality_p_value=0.999325	major_base=T	major_cov=39/37	major_frequency=9.744e-01	minor_base=G	minor_cov=0/2	new_cov=39/37	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	336	.	NC_000913	3520507	0	G	A	consensus_score=245.6	frequency=1	major_base=A	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	337	.	NC_000913	3555047	0	G	C	consensus_score=311.8	frequency=1	major_base=C	major_cov=35/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/49
RA	338	.	NC_000913	3556207	0	T	C	bias_e_value=2.18433e-06	bias_p_value=4.70593e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.9	fisher_strand_p_value=1.43135e-14	frequency=3.220e-01	ks_quality_p_value=1	major_base=T	major_cov=39/1	major_frequency=6.780e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.220e-01	polymorphism_score=22.9	prediction=polymorphism	ref_cov=39/1	total_cov=39/20
RA	339	.	NC_000913	3560362	0	G	A	bias_e_value=4641580	bias_p_value=0.999985	consensus_score=168.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994526	major_base=A	major_cov=24/29	major_frequency=9.636e-01	minor_base=C	minor_cov=1/1	new_cov=24/29	polymorphism_frequency=9.636e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=25/32
RA	340	.	NC_000913	3560455	1	.	G	consensus_score=227.0	frequency=1	major_base=G	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	341	.	NC_000913	3568732	0	C	G	bias_e_value=381.248	bias_p_value=8.21363e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.7	fisher_strand_p_value=7.36953e-06	frequency=2.037e-01	ks_quality_p_value=0.859338	major_base=C	major_cov=32/11	major_frequency=7.963e-01	minor_base=G	minor_cov=0/11	new_cov=0/11	polymorphism_frequency=2.037e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=32/11	total_cov=32/24
RA	342	.	NC_000913	3647428	0	C	T	consensus_score=196.0	frequency=1	major_base=T	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	343	.	NC_000913	3707947	0	C	A	consensus_score=102.5	frequency=1	major_base=A	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	344	.	NC_000913	3719429	0	G	A	consensus_score=231.8	frequency=1	major_base=A	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	345	.	NC_000913	3725176	0	T	G	consensus_score=251.4	frequency=1	major_base=G	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	346	.	NC_000913	3729440	0	C	T	consensus_score=266.3	frequency=1	major_base=T	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	347	.	NC_000913	3729441	0	C	T	consensus_score=269.4	frequency=1	major_base=T	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	348	.	NC_000913	3730560	0	C	T	consensus_score=199.7	frequency=1	major_base=T	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	349	.	NC_000913	3757668	0	C	T	bias_e_value=19654.7	bias_p_value=0.00423442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.4	fisher_strand_p_value=0.000491322	frequency=2.826e-01	ks_quality_p_value=1	major_base=C	major_cov=18/15	major_frequency=7.174e-01	minor_base=T	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.826e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=18/15	total_cov=19/28
RA	350	.	NC_000913	3770539	0	C	T	consensus_score=214.8	frequency=1	major_base=T	major_cov=31/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
RA	351	.	NC_000913	3773173	0	G	.	bias_e_value=4641650	bias_p_value=1	consensus_score=307.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=33/33	major_frequency=9.706e-01	minor_base=G	minor_cov=1/1	new_cov=33/33	polymorphism_frequency=9.706e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/1	total_cov=34/34
RA	352	.	NC_000913	3773176	0	C	T	bias_e_value=4641490	bias_p_value=0.999966	consensus_score=241.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991768	major_base=T	major_cov=33/32	major_frequency=9.701e-01	minor_base=.	minor_cov=1/1	new_cov=33/32	polymorphism_frequency=9.701e-01	polymorphism_score=-0.9	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	353	.	NC_000913	3782931	0	G	C	bias_e_value=72.1585	bias_p_value=1.55459e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.3	fisher_strand_p_value=1.05296e-06	frequency=2.609e-01	ks_quality_p_value=1	major_base=G	major_cov=19/32	major_frequency=7.391e-01	minor_base=C	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.609e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=19/32	total_cov=37/32
RA	354	.	NC_000913	3815883	1	.	C	bias_e_value=4040820	bias_p_value=0.870557	consensus_score=278.4	fisher_strand_p_value=0.544715	frequency=1	ks_quality_p_value=0.984872	major_base=C	major_cov=52/28	major_frequency=9.756e-01	minor_base=.	minor_cov=2/0	new_cov=52/28	polymorphism_frequency=9.756e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=2/0	total_cov=54/28
RA	355	.	NC_000913	3862664	0	C	G	bias_e_value=3944100	bias_p_value=0.84972	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.5	fisher_strand_p_value=0.516593	frequency=4.103e-01	ks_quality_p_value=0.976724	major_base=C	major_cov=10/13	major_frequency=5.897e-01	minor_base=G	minor_cov=5/11	new_cov=5/11	polymorphism_frequency=4.103e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=10/13	total_cov=16/24
RA	356	.	NC_000913	3925834	0	C	T	consensus_score=156.9	frequency=1	major_base=T	major_cov=18/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/25
RA	357	.	NC_000913	3926991	0	G	A	consensus_score=139.7	frequency=1	major_base=A	major_cov=11/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/26
RA	358	.	NC_000913	3966530	0	C	T	consensus_score=136.8	frequency=1	major_base=T	major_cov=23/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/14
RA	359	.	NC_000913	3966531	0	C	T	consensus_score=129.2	frequency=1	major_base=T	major_cov=23/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/14
RA	360	.	NC_000913	4003502	0	G	T	bias_e_value=2719800	bias_p_value=0.585955	consensus_score=120.2	fisher_strand_p_value=0.242424	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/20	major_frequency=9.333e-01	minor_base=C	minor_cov=3/0	new_cov=22/20	polymorphism_frequency=9.333e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/1	total_cov=25/21
RA	361	.	NC_000913	4004132	0	G	A	bias_e_value=5121.37	bias_p_value=0.00110335	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.1	fisher_strand_p_value=0.00010898	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=9/21	major_frequency=7.500e-01	minor_base=A	minor_cov=10/0	new_cov=10/0	polymorphism_frequency=2.500e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=9/21	total_cov=19/21
RA	362	.	NC_000913	4027233	0	T	A	bias_e_value=97.8913	bias_p_value=2.10898e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.0	fisher_strand_p_value=1.46087e-06	frequency=2.857e-01	ks_quality_p_value=1	major_base=T	major_cov=28/12	major_frequency=7.143e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.857e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=28/12	total_cov=28/29
RA	363	.	NC_000913	4027436	0	T	G	bias_e_value=3354020	bias_p_value=0.722592	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.8	fisher_strand_p_value=0.652937	frequency=5.833e-01	ks_quality_p_value=0.54361	major_base=G	major_cov=9/5	major_frequency=5.833e-01	minor_base=T	minor_cov=8/2	new_cov=9/5	polymorphism_frequency=5.833e-01	polymorphism_score=25.2	prediction=polymorphism	ref_cov=8/2	total_cov=17/7
RA	364	.	NC_000913	4027448	0	G	A	bias_e_value=2079420	bias_p_value=0.447992	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.9	fisher_strand_p_value=1	frequency=5.217e-01	ks_quality_p_value=0.157165	major_base=A	major_cov=8/4	major_frequency=5.217e-01	minor_base=G	minor_cov=8/3	new_cov=8/4	polymorphism_frequency=5.217e-01	polymorphism_score=30.7	prediction=polymorphism	ref_cov=8/3	total_cov=16/7
RA	365	.	NC_000913	4027449	0	T	G	bias_e_value=4346150	bias_p_value=0.936336	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.4	fisher_strand_p_value=0.666846	frequency=4.783e-01	ks_quality_p_value=0.997368	major_base=T	major_cov=9/3	major_frequency=5.217e-01	minor_base=G	minor_cov=7/4	new_cov=7/4	polymorphism_frequency=4.783e-01	polymorphism_score=27.7	prediction=polymorphism	ref_cov=9/3	total_cov=17/7
RA	366	.	NC_000913	4037496	0	A	T	bias_e_value=4633800	bias_p_value=0.998309	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.6	fisher_strand_p_value=1	frequency=4.688e-01	ks_quality_p_value=0.942411	major_base=A	major_cov=18/16	major_frequency=5.312e-01	minor_base=T	minor_cov=15/15	new_cov=15/15	polymorphism_frequency=4.688e-01	polymorphism_score=102.7	prediction=polymorphism	ref_cov=18/16	total_cov=33/31
RA	367	.	NC_000913	4126210	0	T	G	bias_e_value=46.0114	bias_p_value=9.91272e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.6	fisher_strand_p_value=6.50184e-07	frequency=3.529e-01	ks_quality_p_value=1	major_base=T	major_cov=19/25	major_frequency=6.471e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.529e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=19/25	total_cov=43/25
RA	368	.	NC_000913	4150418	0	A	G	consensus_score=157.7	frequency=1	major_base=G	major_cov=29/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/16
RA	369	.	NC_000913	4161142	0	C	A	bias_e_value=0.00107701	bias_p_value=2.32032e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.7	fisher_strand_p_value=8.76922e-12	frequency=2.419e-01	ks_quality_p_value=1	major_base=C	major_cov=44/3	major_frequency=7.581e-01	minor_base=A	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.419e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=44/3	total_cov=44/18
RA	370	.	NC_000913	4161148	0	G	A	bias_e_value=0.000829012	bias_p_value=1.78603e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.6	fisher_strand_p_value=6.68131e-12	frequency=2.381e-01	ks_quality_p_value=1	major_base=G	major_cov=45/3	major_frequency=7.619e-01	minor_base=A	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.381e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=45/3	total_cov=45/18
RA	371	.	NC_000913	4193996	0	T	G	bias_e_value=3908950	bias_p_value=0.842146	consensus_score=284.4	fisher_strand_p_value=0.493671	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=40/38	major_frequency=9.873e-01	minor_base=T	minor_cov=0/1	new_cov=40/38	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=40/39
RA	372	.	NC_000913	4217310	0	A	G	consensus_score=256.9	frequency=1	major_base=G	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	373	.	NC_000913	4223597	0	C	T	bias_e_value=0.0035467	bias_p_value=7.64102e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.6	fisher_strand_p_value=3.12684e-11	frequency=2.090e-01	ks_quality_p_value=0.968952	major_base=C	major_cov=4/49	major_frequency=7.910e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.090e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=4/49	total_cov=18/50
RA	374	.	NC_000913	4223638	0	T	C	consensus_score=258.2	frequency=1	major_base=C	major_cov=19/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/51
RA	375	.	NC_000913	4296268	0	T	C	bias_e_value=599382	bias_p_value=0.129131	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.6	fisher_strand_p_value=0.0968421	frequency=5.000e-01	ks_quality_p_value=0.292068	major_base=T	major_cov=6/7	major_frequency=5.000e-01	minor_base=C	minor_cov=11/2	new_cov=11/2	polymorphism_frequency=5.000e-01	polymorphism_score=36.5	prediction=polymorphism	ref_cov=6/7	total_cov=17/9
RA	376	.	NC_000913	4296380	1	.	C	consensus_score=111.2	frequency=1	major_base=C	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	377	.	NC_000913	4296380	2	.	G	consensus_score=109.0	frequency=1	major_base=G	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	378	.	NC_000913	4325644	0	C	T	consensus_score=266.0	frequency=1	major_base=T	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	379	.	NC_000913	4331890	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=130.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/29	major_frequency=9.762e-01	minor_base=G	minor_cov=0/1	new_cov=12/29	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/31
RA	380	.	NC_000913	4346685	0	C	T	bias_e_value=0.0101843	bias_p_value=2.19412e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.2	fisher_strand_p_value=9.34995e-11	frequency=2.027e-01	ks_quality_p_value=0.972889	major_base=C	major_cov=7/52	major_frequency=7.973e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.027e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=7/52	total_cov=22/53
RA	381	.	NC_000913	4346703	0	C	T	bias_e_value=0.0141425	bias_p_value=3.04688e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.3	fisher_strand_p_value=1.28139e-10	frequency=2.319e-01	ks_quality_p_value=1	major_base=C	major_cov=7/46	major_frequency=7.681e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.319e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=7/46	total_cov=23/46
RA	382	.	NC_000913	4368641	0	G	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=160.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998943	major_base=T	major_cov=20/23	major_frequency=9.773e-01	minor_base=G	minor_cov=0/1	new_cov=20/23	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=20/24
RA	383	.	NC_000913	4437890	0	C	T	bias_e_value=4641130	bias_p_value=0.999887	consensus_score=121.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.984988	major_base=T	major_cov=17/17	major_frequency=9.714e-01	minor_base=G	minor_cov=0/1	new_cov=17/17	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	384	.	NC_000913	4465767	0	C	A	bias_e_value=11147.7	bias_p_value=0.00240167	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.2	fisher_strand_p_value=0.000272233	frequency=2.586e-01	ks_quality_p_value=0.953024	major_base=C	major_cov=26/17	major_frequency=7.414e-01	minor_base=A	minor_cov=1/14	new_cov=1/14	polymorphism_frequency=2.586e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=26/17	total_cov=27/32
RA	385	.	NC_000913	4465787	0	G	A	bias_e_value=12.9477	bias_p_value=2.78946e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.9	fisher_strand_p_value=1.6805e-07	frequency=3.922e-01	ks_quality_p_value=1	major_base=G	major_cov=22/9	major_frequency=6.078e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=3.922e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=22/9	total_cov=22/31
RA	386	.	NC_000913	4465800	0	C	A	bias_e_value=1467.22	bias_p_value=0.000316099	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.9	fisher_strand_p_value=2.7956e-05	frequency=3.077e-01	ks_quality_p_value=0.983051	major_base=C	major_cov=22/14	major_frequency=6.923e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=3.077e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=22/14	total_cov=22/30
RA	387	.	NC_000913	4473900	0	C	T	consensus_score=213.7	frequency=1	major_base=T	major_cov=30/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/27
RA	388	.	NC_000913	4475493	0	T	C	consensus_score=135.3	frequency=1	major_base=C	major_cov=15/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/19
RA	389	.	NC_000913	4476605	0	G	A	consensus_score=143.1	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	390	.	NC_000913	4489016	0	C	T	consensus_score=242.5	frequency=1	major_base=T	major_cov=27/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/38
RA	391	.	NC_000913	4510238	0	T	G	consensus_score=212.1	frequency=1	major_base=G	major_cov=25/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/34
RA	392	.	NC_000913	4536197	0	A	T	bias_e_value=0.0451465	bias_p_value=9.72638e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.9	fisher_strand_p_value=4.31042e-10	frequency=4.000e-01	ks_quality_p_value=1	major_base=A	major_cov=0/21	major_frequency=6.000e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=4.000e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=0/21	total_cov=14/21
RA	393	.	NC_000913	4562396	0	A	G	consensus_score=221.4	frequency=1	major_base=G	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	394	.	NC_000913	4598984	0	G	A	consensus_score=182.3	frequency=1	major_base=A	major_cov=28/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/21
RA	395	.	NC_000913	4622250	0	A	G	bias_e_value=0.102766	bias_p_value=2.21399e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.3	fisher_strand_p_value=1.02011e-09	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=6/39	major_frequency=7.500e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.500e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=6/39	total_cov=21/39
RA	396	.	NC_000913	4630340	0	A	C	bias_e_value=2.24118	bias_p_value=4.82841e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.4	fisher_strand_p_value=2.61573e-08	frequency=4.386e-01	ks_quality_p_value=1	major_base=A	major_cov=22/10	major_frequency=5.614e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=4.386e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=22/10	total_cov=22/37
MC	397	.	NC_000913	257908	258683	767	0	left_inside_cov=2	left_outside_cov=54	right_inside_cov=0	right_outside_cov=52
MC	398	.	NC_000913	260187	274943	0	988	left_inside_cov=0	left_outside_cov=62	right_inside_cov=13	right_outside_cov=14
MC	399	.	NC_000913	574798	618862	990	0	left_inside_cov=12	left_outside_cov=14	right_inside_cov=0	right_outside_cov=49
MC	400	.	NC_000913	1196340	1211504	0	0	left_inside_cov=13	left_outside_cov=14	right_inside_cov=13	right_outside_cov=14
MC	401	.	NC_000913	1299499	1300697	1197	0	left_inside_cov=0	left_outside_cov=32	right_inside_cov=0	right_outside_cov=32
MC	402	.	NC_000913	1978503	1979278	767	0	left_inside_cov=1	left_outside_cov=30	right_inside_cov=1	right_outside_cov=30
MC	403	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=57	right_inside_cov=5	right_outside_cov=62
MC	404	.	NC_000913	3423851	3424429	578	0	left_inside_cov=13	left_outside_cov=14	right_inside_cov=13	right_outside_cov=14
MC	405	.	NC_000913	4035346	4036882	387	1147	left_inside_cov=12	left_outside_cov=14	right_inside_cov=13	right_outside_cov=14
JC	406	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=247	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=249	max_left_minus=242	max_left_plus=249	max_min_left=122	max_min_left_minus=116	max_min_left_plus=122	max_min_right=104	max_min_right_minus=104	max_min_right_plus=97	max_pos_hash_score=494	max_right=247	max_right_minus=247	max_right_plus=238	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.65	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=247	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=247	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=38
JC	407	.	NC_000913	19796	1	NC_000913	362212	-1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__19796__1__NC_000913__362212__-1__0____251__251__1__0	max_left=248	max_left_minus=248	max_left_plus=248	max_min_left=121	max_min_left_minus=119	max_min_left_plus=121	max_min_right=123	max_min_right_minus=123	max_min_right_plus=118	max_pos_hash_score=494	max_right=246	max_right_minus=246	max_right_plus=244	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.36	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=79
JC	408	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=31	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=240	max_left_minus=234	max_left_plus=240	max_min_left=119	max_min_left_minus=107	max_min_left_plus=119	max_min_right=121	max_min_right_minus=118	max_min_right_plus=121	max_pos_hash_score=478	max_right=234	max_right_minus=234	max_right_plus=234	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=52	polymorphism_frequency=9.817e-01	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=8	side_1_possible_overlap_registers=247	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=50
JC	409	.	NC_000913	257908	1	NC_000913	431312	-1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__257908__1__NC_000913__431312__-1__0____251__251__1__0	max_left=247	max_left_minus=247	max_left_plus=227	max_min_left=120	max_min_left_minus=108	max_min_left_plus=120	max_min_right=123	max_min_right_minus=123	max_min_right_plus=120	max_pos_hash_score=494	max_right=250	max_right_minus=247	max_right_plus=250	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=66
JC	410	.	NC_000913	258675	-1	NC_000913	362204	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__258675__-1__NC_000913__362204__1__0____251__251__1__0	max_left=235	max_left_minus=230	max_left_plus=235	max_min_left=118	max_min_left_minus=66	max_min_left_plus=118	max_min_right=123	max_min_right_minus=108	max_min_right_plus=123	max_pos_hash_score=494	max_right=240	max_right_minus=240	max_right_plus=236	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.02	new_junction_read_count=61	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=59
JC	411	.	NC_000913	258675	-1	NC_000913	431304	1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=32	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__258675__-1__NC_000913__431304__1__0____251__251__1__0	max_left=249	max_left_minus=249	max_left_plus=249	max_min_left=121	max_min_left_minus=95	max_min_left_plus=121	max_min_right=122	max_min_right_minus=114	max_min_right_plus=122	max_pos_hash_score=494	max_right=241	max_right_minus=228	max_right_plus=241	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=65
JC	412	.	NC_000913	260186	-1	NC_000913	273955	1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__260186__-1__NC_000913__273955__1__0____251__251__0__1	max_left=248	max_left_minus=248	max_left_plus=209	max_min_left=119	max_min_left_minus=119	max_min_left_plus=115	max_min_right=125	max_min_right_minus=125	max_min_right_plus=124	max_pos_hash_score=494	max_right=245	max_right_minus=245	max_right_plus=243	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.04	new_junction_read_count=62	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=247	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=61
JC	413	.	NC_000913	381260	1	NC_000913	467310	1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__381260__1__NC_000913__467310__1__0____251__251__1__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=119	max_min_left_minus=119	max_min_left_plus=113	max_min_right=125	max_min_right_minus=123	max_min_right_plus=125	max_pos_hash_score=494	max_right=249	max_right_minus=249	max_right_plus=237	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.79	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	414	.	NC_000913	405538	1	NC_000913	608008	1	0	alignment_overlap=3	coverage_minus=25	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__405535__1__NC_000913__608008__1__3____251__251__0__1	max_left=244	max_left_minus=236	max_left_plus=244	max_min_left=122	max_min_left_minus=107	max_min_left_plus=122	max_min_right=117	max_min_right_minus=117	max_min_right_plus=115	max_pos_hash_score=488	max_right=246	max_right_minus=224	max_right_plus=246	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=49	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=7	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=237	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=3	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=49
JC	415	.	NC_000913	405544	-1	NC_000913	609349	-1	0	alignment_overlap=2	coverage_minus=23	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__405546__-1__NC_000913__609349__-1__2____251__251__0__1	max_left=245	max_left_minus=216	max_left_plus=245	max_min_left=120	max_min_left_minus=120	max_min_left_plus=114	max_min_right=124	max_min_right_minus=124	max_min_right_plus=117	max_pos_hash_score=490	max_right=243	max_right_minus=243	max_right_plus=241	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=61	polymorphism_frequency=9.518e-01	pos_hash_score=56	prediction=consensus	read_count_offset=7	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=60
JC	416	.	NC_000913	467314	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__467314__-1__NC_000913__1467910__1__0____251__251__0__1	max_left=247	max_left_minus=247	max_left_plus=241	max_min_left=122	max_min_left_minus=122	max_min_left_plus=116	max_min_right=123	max_min_right_minus=123	max_min_right_plus=121	max_pos_hash_score=494	max_right=244	max_right_minus=241	max_right_plus=244	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=72	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=71
JC	417	.	NC_000913	575785	-1	NC_000913	618863	1	0	alignment_overlap=0	coverage_minus=22	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__575785__-1__NC_000913__618863__1__0____251__251__1__0	max_left=241	max_left_minus=241	max_left_plus=241	max_min_left=124	max_min_left_minus=117	max_min_left_plus=124	max_min_right=121	max_min_right_minus=121	max_min_right_plus=115	max_pos_hash_score=494	max_right=244	max_right_minus=240	max_right_plus=244	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.82	new_junction_read_count=49	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=247	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=49
JC	418	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=4	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=1.327e-01	junction_possible_overlap_registers=169	key=NC_000913__696741__-1__NC_000913__697057__1__78____251__251__0__0	max_left=109	max_left_minus=109	max_left_plus=74	max_min_left=74	max_min_left_minus=35	max_min_left_plus=74	max_min_right=83	max_min_right_minus=83	max_min_right_plus=0	max_pos_hash_score=338	max_right=138	max_right_minus=138	max_right_plus=99	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.12	new_junction_read_count=5	polymorphism_frequency=1.327e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=78	side_1_possible_overlap_registers=247	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=169	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=5
JC	419	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=13	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=244	max_left_minus=202	max_left_plus=244	max_min_left=119	max_min_left_minus=119	max_min_left_plus=111	max_min_right=109	max_min_right_minus=109	max_min_right_plus=88	max_pos_hash_score=486	max_right=224	max_right_minus=224	max_right_plus=213	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.54	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=247	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=31
JC	420	.	NC_000913	1322524	-1	NC_000913	1322534	1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__1322524__-1__NC_000913__1322534__1__0____251__251__0__0	max_left=243	max_left_minus=243	max_left_plus=158	max_min_left=109	max_min_left_minus=109	max_min_left_plus=104	max_min_right=120	max_min_right_minus=115	max_min_right_plus=120	max_pos_hash_score=494	max_right=249	max_right_minus=249	max_right_plus=244	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.64	new_junction_read_count=38	polymorphism_frequency=9.048e-01	pos_hash_score=33	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.07	side_1_overlap=0	side_1_possible_overlap_registers=247	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=247	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=37
JC	421	.	NC_000913	1469240	-1	NC_000913	1590540	-1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__1469240__-1__NC_000913__1590540__-1__0____251__251__1__0	max_left=249	max_left_minus=249	max_left_plus=237	max_min_left=119	max_min_left_minus=119	max_min_left_plus=109	max_min_right=120	max_min_right_minus=103	max_min_right_plus=120	max_pos_hash_score=494	max_right=243	max_right_minus=229	max_right_plus=243	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.69	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	422	.	NC_000913	1579695	1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__1579695__1__NC_000913__2101749__1__0____251__251__0__1	max_left=247	max_left_minus=245	max_left_plus=247	max_min_left=124	max_min_left_minus=118	max_min_left_plus=124	max_min_right=115	max_min_right_minus=115	max_min_right_plus=115	max_pos_hash_score=494	max_right=238	max_right_minus=237	max_right_plus=238	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.82	new_junction_read_count=49	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=48
JC	423	.	NC_000913	1579698	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__1579698__-1__NC_000913__2290113__-1__0____251__251__0__1	max_left=248	max_left_minus=236	max_left_plus=248	max_min_left=115	max_min_left_minus=113	max_min_left_plus=115	max_min_right=117	max_min_right_minus=117	max_min_right_plus=109	max_pos_hash_score=494	max_right=240	max_right_minus=240	max_right_plus=229	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=54	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=243	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=54
JC	424	.	NC_000913	1590536	1	NC_000913	1651548	-1	0	alignment_overlap=2	coverage_minus=29	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1590534__1__NC_000913__1651548__-1__2____251__251__0__1	max_left=247	max_left_minus=219	max_left_plus=247	max_min_left=123	max_min_left_minus=123	max_min_left_plus=94	max_min_right=124	max_min_right_minus=109	max_min_right_plus=124	max_pos_hash_score=490	max_right=247	max_right_minus=243	max_right_plus=247	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.00	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=59
JC	425	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=13	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____251__251__0__0	max_left=227	max_left_minus=227	max_left_plus=226	max_min_left=116	max_min_left_minus=107	max_min_left_plus=116	max_min_right=111	max_min_right_minus=111	max_min_right_plus=96	max_pos_hash_score=478	max_right=236	max_right_minus=236	max_right_plus=220	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.50	new_junction_read_count=29	polymorphism_frequency=9.836e-01	pos_hash_score=29	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=8	side_1_possible_overlap_registers=247	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	426	.	NC_000913	1978503	1	NC_000913	3136353	-1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__1978503__1__NC_000913__3136353__-1__0____251__251__1__0	max_left=246	max_left_minus=240	max_left_plus=246	max_min_left=111	max_min_left_minus=111	max_min_left_plus=107	max_min_right=123	max_min_right_minus=123	max_min_right_plus=117	max_pos_hash_score=494	max_right=240	max_right_minus=240	max_right_plus=229	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.12	new_junction_read_count=67	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=66
JC	427	.	NC_000913	2176844	1	NC_000913	4503515	-1	0	alignment_overlap=1	coverage_minus=22	coverage_plus=29	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__2176843__1__NC_000913__4503515__-1__1____251__251__0__0	max_left=239	max_left_minus=219	max_left_plus=239	max_min_left=119	max_min_left_minus=117	max_min_left_plus=119	max_min_right=121	max_min_right_minus=92	max_min_right_plus=121	max_pos_hash_score=492	max_right=249	max_right_minus=246	max_right_plus=249	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	read_count_offset=13	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=233	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=51
JC	428	.	NC_000913	2176856	-1	NC_000913	4502090	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__2176856__-1__NC_000913__4502090__1__0____251__251__0__0	max_left=248	max_left_minus=248	max_left_plus=235	max_min_left=116	max_min_left_minus=104	max_min_left_plus=116	max_min_right=115	max_min_right_minus=115	max_min_right_plus=110	max_pos_hash_score=494	max_right=242	max_right_minus=226	max_right_plus=242	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.60	new_junction_read_count=36	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	read_count_offset=13	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=234	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=36
JC	429	.	NC_000913	2238948	1	NC_000913	2514275	1	0	alignment_overlap=2	coverage_minus=28	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2238946__1__NC_000913__2514275__1__2____251__251__0__1	max_left=245	max_left_minus=240	max_left_plus=245	max_min_left=120	max_min_left_minus=110	max_min_left_plus=120	max_min_right=123	max_min_right_minus=120	max_min_right_plus=123	max_pos_hash_score=490	max_right=244	max_right_minus=244	max_right_plus=222	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=51
JC	430	.	NC_000913	2238953	-1	NC_000913	2515616	-1	0	alignment_overlap=3	coverage_minus=35	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2238956__-1__NC_000913__2515616__-1__3____251__251__0__1	max_left=247	max_left_minus=243	max_left_plus=247	max_min_left=104	max_min_left_minus=94	max_min_left_plus=104	max_min_right=121	max_min_right_minus=114	max_min_right_plus=121	max_pos_hash_score=488	max_right=247	max_right_minus=247	max_right_plus=242	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.00	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=3	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=59
JC	431	.	NC_000913	2278175	1	NC_000913	2278182	-1	0	alignment_overlap=6	coverage_minus=9	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__2278175__1__NC_000913__2278188__-1__6____251__251__0__0	max_left=240	max_left_minus=220	max_left_plus=240	max_min_left=115	max_min_left_minus=114	max_min_left_plus=115	max_min_right=120	max_min_right_minus=120	max_min_right_plus=120	max_pos_hash_score=482	max_right=241	max_right_minus=232	max_right_plus=241	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.51	new_junction_read_count=30	polymorphism_frequency=9.527e-01	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=6	side_1_possible_overlap_registers=247	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=28
JC	432	.	NC_000913	2288919	1	NC_000913	3206580	1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=47	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__2288919__1__NC_000913__3206580__1__0____251__251__1__0	max_left=244	max_left_minus=242	max_left_plus=244	max_min_left=123	max_min_left_minus=116	max_min_left_plus=123	max_min_right=123	max_min_right_minus=114	max_min_right_plus=123	max_pos_hash_score=494	max_right=250	max_right_minus=242	max_right_plus=250	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.29	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	433	.	NC_000913	2290113	-1	NC_000913	3206583	-1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__2290113__-1__NC_000913__3206583__-1__0____251__251__1__0	max_left=244	max_left_minus=240	max_left_plus=244	max_min_left=124	max_min_left_minus=119	max_min_left_plus=124	max_min_right=124	max_min_right_minus=121	max_min_right_plus=124	max_pos_hash_score=494	max_right=240	max_right_minus=240	max_right_plus=164	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.82	new_junction_read_count=49	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=49
JC	434	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=34	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=240	max_min_left=118	max_min_left_minus=118	max_min_left_plus=115	max_min_right=121	max_min_right_minus=113	max_min_right_plus=121	max_pos_hash_score=478	max_right=231	max_right_minus=230	max_right_plus=231	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.97	new_junction_read_count=56	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=247	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=55
JC	435	.	NC_000913	3136345	1	NC_000913	3583428	1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__3136345__1__NC_000913__3583428__1__0____251__251__0__1	max_left=242	max_left_minus=242	max_left_plus=223	max_min_left=115	max_min_left_minus=101	max_min_left_plus=115	max_min_right=120	max_min_right_minus=120	max_min_right_plus=97	max_pos_hash_score=494	max_right=247	max_right_minus=247	max_right_plus=247	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.87	new_junction_read_count=52	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=49
JC	436	.	NC_000913	3583428	1	NC_000913	4542049	-1	0	alignment_overlap=1	coverage_minus=25	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__3583428__1__NC_000913__4542050__-1__1____251__251__1__0	max_left=247	max_left_minus=247	max_left_plus=244	max_min_left=122	max_min_left_minus=122	max_min_left_plus=120	max_min_right=115	max_min_right_minus=113	max_min_right_plus=115	max_pos_hash_score=492	max_right=239	max_right_minus=219	max_right_plus=239	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51
JC	437	.	NC_000913	3584195	-1	NC_000913	4542042	1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__3584195__-1__NC_000913__4542042__1__0____251__251__1__0	max_left=245	max_left_minus=244	max_left_plus=245	max_min_left=124	max_min_left_minus=124	max_min_left_plus=124	max_min_right=123	max_min_right_minus=123	max_min_right_plus=110	max_pos_hash_score=494	max_right=247	max_right_minus=247	max_right_plus=221	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.05	new_junction_read_count=63	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=63
JC	438	.	NC_000913	4123617	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__4123617__1__NC_000913__4498181__1__0____251__251__0__1	max_left=245	max_left_minus=243	max_left_plus=245	max_min_left=121	max_min_left_minus=120	max_min_left_plus=121	max_min_right=121	max_min_right_minus=121	max_min_right_plus=111	max_pos_hash_score=494	max_right=244	max_right_minus=239	max_right_plus=244	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=59	polymorphism_frequency=9.830e-01	pos_hash_score=53	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=59
JC	439	.	NC_000913	4123621	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=247	key=NC_000913__4123621__-1__NC_000913__4499511__-1__0____251__251__0__1	max_left=249	max_left_minus=249	max_left_plus=245	max_min_left=122	max_min_left_minus=122	max_min_left_plus=116	max_min_right=123	max_min_right_minus=118	max_min_right_plus=123	max_pos_hash_score=494	max_right=247	max_right_minus=243	max_right_plus=247	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=70	polymorphism_frequency=9.856e-01	pos_hash_score=63	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=69
UN	440	.	NC_000913	15616	16497
UN	441	.	NC_000913	16507	16507
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