#=GENOME_DIFF 1.0 #=CREATED 16:20:31 28 Nov 2024 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20231211run9/CV66_S20_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20231211run9/CV66_S20_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20231211run9/CV66_S20_L001_R2_001.fastq.gz #=REFSEQ /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff #=READSEQ /ld1/raw_sequence_data/20231211run9/CV66_S20_L001_R1_001.fastq.gz #=READSEQ /ld1/raw_sequence_data/20231211run9/CV66_S20_L001_R2_001.fastq.gz #=CONVERTED-BASES 329242811 #=CONVERTED-READS 1362713 #=INPUT-BASES 329264196 #=INPUT-READS 1362868 #=MAPPED-BASES 279976574 #=MAPPED-READS 1171917 DEL 1 1007 NC_000913 310 1 repeat_length=1 repeat_new_copies=8 repeat_ref_copies=9 repeat_seq=T SNP 2 1008 NC_000913 393 G SNP 3 1009 NC_000913 588 A SNP 4 1010 NC_000913 774 C SNP 5 1011 NC_000913 867 T SNP 6 1012 NC_000913 939 A SNP 7 1013 NC_000913 966 C SNP 8 1014 NC_000913 969 G SNP 9 1015 NC_000913 1206 T SNP 10 1016 NC_000913 1278 T SNP 11 1017 NC_000913 1299 C SNP 12 1018 NC_000913 1302 C SNP 13 1019 NC_000913 1323 T SNP 14 1020 NC_000913 1341 G SNP 15 1021 NC_000913 1407 T SNP 16 1022 NC_000913 1425 G SNP 17 1023 NC_000913 1509 G SNP 18 1024 NC_000913 1593 G SNP 19 1025 NC_000913 1797 A SNP 20 1026 NC_000913 1860 A SNP 21 1027 NC_000913 1875 G SNP 22 1028 NC_000913 1884 A SNP 23 1029 NC_000913 2038 T SNP 24 1030 NC_000913 2108 T SNP 25 1031 NC_000913 2116 C SNP 26 1032 NC_000913 2211 T SNP 27 1033 NC_000913 2247 A SNP 28 1034 NC_000913 2307 T SNP 29 1035 NC_000913 2310 T SNP 30 1036 NC_000913 2343 T SNP 31 1037 NC_000913 2373 A SNP 32 1038 NC_000913 2382 G SNP 33 1039 NC_000913 2469 T SNP 34 1040 NC_000913 2508 G SNP 35 1041 NC_000913 2595 T SNP 36 1042 NC_000913 2597 C SNP 37 1043 NC_000913 2676 T SNP 38 1044 NC_000913 2709 G SNP 39 1045 NC_000913 2760 C SNP 40 1046 NC_000913 3025 G SNP 41 1047 NC_000913 3028 T SNP 42 1048 NC_000913 3031 C SNP 43 1049 NC_000913 3055 T SNP 44 1050 NC_000913 3073 A SNP 45 1051 NC_000913 3097 C SNP 46 1052 NC_000913 3142 T SNP 47 1053 NC_000913 3196 A SNP 48 1054 NC_000913 3199 A SNP 49 1055 NC_000913 3244 T SNP 50 1056 NC_000913 3424 T SNP 51 1057 NC_000913 3520 T SNP 52 1058 NC_000913 3547 T SNP 53 1059 NC_000913 3622 T SNP 54 1060 NC_000913 3763 T SNP 55 1061 NC_000913 3937 G SNP 56 1062 NC_000913 4102 C SNP 57 1063 NC_000913 4336 G SNP 58 1064 NC_000913 4351 G SNP 59 1065 NC_000913 4363 A SNP 60 1066 NC_000913 4420 A SUB 61 1067,1068 NC_000913 4441 2 AG SNP 62 1069 NC_000913 4780 C SNP 63 1070 NC_000913 4804 G SNP 64 1071 NC_000913 4822 C DEL 65 1072 NC_000913 5067 1 SNP 66 1073 NC_000913 5099 C SNP 67 1074 NC_000913 5171 T SNP 68 1075 NC_000913 5183 C SNP 69 1076 NC_000913 5234 A SNP 70 1077 NC_000913 5442 C SNP 71 1078 NC_000913 5603 G SNP 72 1079 NC_000913 5642 C SNP 73 1080 NC_000913 5732 G SNP 74 1081 NC_000913 5806 A SNP 75 1082 NC_000913 5851 T SNP 76 1083 NC_000913 6106 C SNP 77 1084 NC_000913 6239 T SNP 78 1085 NC_000913 6349 T SNP 79 1086 NC_000913 6502 A SNP 80 1087 NC_000913 6574 G SNP 81 1088 NC_000913 6595 C SNP 82 1089 NC_000913 6748 A SNP 83 1090 NC_000913 6850 G SNP 84 1091 NC_000913 6898 G SNP 85 1092 NC_000913 6933 A SNP 86 1093 NC_000913 7132 C SNP 87 1094 NC_000913 7297 C SNP 88 1095 NC_000913 7342 C SNP 89 1096 NC_000913 7384 C SNP 90 1097 NC_000913 7395 C SNP 91 1098 NC_000913 7414 A SNP 92 1099 NC_000913 7456 T SNP 93 1100 NC_000913 7459 C SNP 94 1101 NC_000913 7474 C SNP 95 1102 NC_000913 7479 T SNP 96 1103 NC_000913 7498 G SNP 97 1104 NC_000913 7598 G SNP 98 1105 NC_000913 7600 A SNP 99 1106 NC_000913 7618 C SNP 100 1107 NC_000913 7624 G SNP 101 1108 NC_000913 7627 G SNP 102 1109 NC_000913 7681 G SNP 103 1110 NC_000913 7711 T SNP 104 1111 NC_000913 7939 A SNP 105 1112 NC_000913 8963 T SUB 106 1113,1114 NC_000913 8975 2 TA SNP 107 1115 NC_000913 8996 T SNP 108 1116 NC_000913 9488 A SNP 109 1117 NC_000913 9623 A SNP 110 1118 NC_000913 9665 T SNP 111 1119 NC_000913 9668 T SNP 112 1120 NC_000913 9754 C SNP 113 1121 NC_000913 9839 A SNP 114 1122 NC_000913 9851 T SNP 115 1123 NC_000913 10006 A SNP 116 1124 NC_000913 10015 A SNP 117 1125 NC_000913 10024 A SNP 118 1126 NC_000913 10099 A SNP 119 1127 NC_000913 10260 A SNP 120 1128 NC_000913 10336 G SNP 121 1129 NC_000913 10548 A SNP 122 1130 NC_000913 10637 A SNP 123 1131 NC_000913 10642 G SNP 124 1132 NC_000913 10703 T SNP 125 1133 NC_000913 10718 A SNP 126 1134 NC_000913 10747 A SNP 127 1135 NC_000913 10751 T SNP 128 1136 NC_000913 10754 G SNP 129 1137 NC_000913 10757 C SNP 130 1138 NC_000913 10772 A SNP 131 1139 NC_000913 10802 C SNP 132 1140 NC_000913 10840 A SNP 133 1141 NC_000913 10865 G SNP 134 1142 NC_000913 10973 A SNP 135 1143 NC_000913 10985 G SNP 136 1144 NC_000913 11021 C SNP 137 1145 NC_000913 11063 T SNP 138 1146 NC_000913 11156 A SNP 139 1147 NC_000913 11225 T SNP 140 1148 NC_000913 11366 T SNP 141 1149 NC_000913 11439 G SNP 142 1150 NC_000913 11481 A SNP 143 1151 NC_000913 11541 A SNP 144 1152 NC_000913 11695 A SNP 145 1153 NC_000913 11814 A SNP 146 1154 NC_000913 11854 G SNP 147 1155 NC_000913 11861 T SNP 148 1156 NC_000913 11925 C SNP 149 1157 NC_000913 12026 G SNP 150 1158 NC_000913 12237 T SNP 151 1159 NC_000913 12309 G SNP 152 1160 NC_000913 12357 C SNP 153 1161 NC_000913 12384 C SNP 154 1162 NC_000913 12507 C SNP 155 1163 NC_000913 12714 T SNP 156 1164 NC_000913 12846 T SNP 157 1165 NC_000913 12879 C SNP 158 1166 NC_000913 13014 G SNP 159 1167 NC_000913 13029 T SNP 160 1168 NC_000913 13320 G SNP 161 1169 NC_000913 13539 G SNP 162 1170 NC_000913 13866 A SNP 163 1171 NC_000913 13932 G SNP 164 1172 NC_000913 14223 A SNP 165 1173 NC_000913 14232 A SNP 166 1174 NC_000913 14401 T SNP 167 1175 NC_000913 14647 C SNP 168 1176 NC_000913 14686 T SNP 169 1177 NC_000913 14698 T SNP 170 1178 NC_000913 14701 C SNP 171 1179 NC_000913 14704 G SNP 172 1180 NC_000913 14956 C SNP 173 1181 NC_000913 15073 T SNP 174 1182 NC_000913 15172 G SNP 175 1183 NC_000913 15174 A SNP 176 1184 NC_000913 15226 T SNP 177 1185 NC_000913 15328 T SNP 178 1186 NC_000913 15338 T SNP 179 1187 NC_000913 15369 A SNP 180 1188 NC_000913 16749 A SNP 181 1189 NC_000913 16966 G SNP 182 1190 NC_000913 16981 A SNP 183 1191 NC_000913 17039 T SNP 184 1192 NC_000913 17085 C SNP 185 1193 NC_000913 17175 T SNP 186 1194 NC_000913 17219 T SUB 187 1195,1196 NC_000913 17228 2 AT SNP 188 1197 NC_000913 17231 A SNP 189 1198 NC_000913 17245 G SNP 190 1199 NC_000913 17281 A SNP 191 1200 NC_000913 17309 G INS 192 1201 NC_000913 17348 A repeat_length=1 repeat_new_copies=6 repeat_ref_copies=5 repeat_seq=A SNP 193 1202 NC_000913 17350 T SNP 194 1203 NC_000913 17383 G SNP 195 1204 NC_000913 17385 A SNP 196 1205 NC_000913 17399 G SNP 197 1206 NC_000913 17436 T SNP 198 1207 NC_000913 17578 T SNP 199 1208 NC_000913 17809 T SNP 200 1209 NC_000913 17830 C SNP 201 1210 NC_000913 17893 C SNP 202 1211 NC_000913 17908 G SNP 203 1212 NC_000913 18093 T SNP 204 1213 NC_000913 18118 G SNP 205 1214 NC_000913 18127 A SNP 206 1215 NC_000913 18169 C SNP 207 1216 NC_000913 18253 A SNP 208 1217 NC_000913 18322 T SNP 209 1218 NC_000913 18477 C SNP 210 1219 NC_000913 19014 T SNP 211 1220 NC_000913 19398 G SNP 212 1221 NC_000913 19613 C SNP 213 1222 NC_000913 19627 C INS 214 1223 NC_000913 19634 C repeat_length=1 repeat_new_copies=6 repeat_ref_copies=5 repeat_seq=C SNP 215 1224 NC_000913 19670 A SNP 216 1225 NC_000913 20590 C SNP 217 1226 NC_000913 20600 A DEL 218 1227 NC_000913 20605 1 INS 219 2065 NC_000913 20703 GCAAGAACCTGCAA SNP 220 1228 NC_000913 21617 C SNP 221 1229 NC_000913 21619 G SNP 222 1230 NC_000913 21750 T SNP 223 1231 NC_000913 21895 T SNP 224 1232 NC_000913 21910 T SNP 225 1233 NC_000913 21922 G SNP 226 1234 NC_000913 21925 G SNP 227 1235 NC_000913 21952 A SNP 228 1236 NC_000913 22048 A SNP 229 1237 NC_000913 22373 C SNP 230 1238 NC_000913 22468 G SNP 231 1239 NC_000913 22942 G SNP 232 1240 NC_000913 22945 A SNP 233 1241 NC_000913 23032 T SNP 234 1242 NC_000913 23038 G SNP 235 1243 NC_000913 23104 G SNP 236 1244 NC_000913 23116 T SNP 237 1245 NC_000913 23137 G SNP 238 1246 NC_000913 23161 T SNP 239 1247 NC_000913 23270 A SNP 240 1248 NC_000913 23297 T SNP 241 1249 NC_000913 23803 C SNP 242 1250 NC_000913 23860 C SUB 243 1251,1252 NC_000913 23896 2 TA SNP 244 1253 NC_000913 23899 C SNP 245 1254 NC_000913 23956 C SNP 246 1255 NC_000913 23962 T SNP 247 1256 NC_000913 23977 T SUB 248 1257,1258 NC_000913 23980 2 TC SNP 249 1259 NC_000913 23983 C SNP 250 1260 NC_000913 23986 C SNP 251 1261 NC_000913 24085 G SNP 252 1262 NC_000913 24091 T SNP 253 1263 NC_000913 24094 T SNP 254 1264 NC_000913 24133 A SNP 255 1265 NC_000913 24136 C SNP 256 1266 NC_000913 24217 C SNP 257 1267 NC_000913 24340 C SNP 258 1268 NC_000913 24616 C SNP 259 1269 NC_000913 24646 G SNP 260 1270 NC_000913 24670 T SNP 261 1271 NC_000913 24781 T SNP 262 1272 NC_000913 24799 A SNP 263 1273 NC_000913 24935 G SNP 264 1274 NC_000913 24977 T SNP 265 1275 NC_000913 25598 G SNP 266 1276 NC_000913 25677 A SNP 267 1277 NC_000913 25685 A SNP 268 1278 NC_000913 26534 C SNP 269 1279 NC_000913 26606 C SNP 270 1280 NC_000913 26609 T SNP 271 1281 NC_000913 26621 G SNP 272 1282 NC_000913 26624 G SNP 273 1283 NC_000913 26636 C SNP 274 1284 NC_000913 26648 T SNP 275 1285 NC_000913 26663 T SNP 276 1286 NC_000913 26666 G SNP 277 1287 NC_000913 27026 T SNP 278 1288 NC_000913 27104 A SNP 279 1289 NC_000913 27367 C SNP 280 1290 NC_000913 45950 A SNP 281 1291 NC_000913 45978 T SNP 282 1292 NC_000913 46028 C SNP 283 1293 NC_000913 46247 C SNP 284 1294 NC_000913 46253 C SNP 285 1295 NC_000913 46277 C SNP 286 1296 NC_000913 46448 A SNP 287 1297 NC_000913 46634 T SNP 288 1298 NC_000913 46652 G SNP 289 1299 NC_000913 46655 G SNP 290 1300 NC_000913 46661 C SNP 291 1301 NC_000913 46790 G SNP 292 1302 NC_000913 46943 C SNP 293 1303 NC_000913 46976 G SNP 294 1304 NC_000913 47099 A SNP 295 1305 NC_000913 47434 C SNP 296 1306 NC_000913 48033 G SNP 297 1307 NC_000913 66635 T SNP 298 1308 NC_000913 71170 C SNP 299 1309 NC_000913 154182 T SNP 300 1310 NC_000913 156068 G SNP 301 1311 NC_000913 193327 T MOB 302 2063,2067 NC_000913 243382 IS1 1 9 SNP 303 1312 NC_000913 271817 A SNP 304 1313 NC_000913 271822 A SNP 305 1314 NC_000913 271834 T SNP 306 1315 NC_000913 271838 A SNP 307 1316 NC_000913 271876 G SNP 308 1317 NC_000913 271901 A SNP 309 1318 NC_000913 271943 G SNP 310 1319 NC_000913 271946 A SNP 311 1320 NC_000913 271964 T SNP 312 1321 NC_000913 271967 G SNP 313 1322 NC_000913 284535 G SNP 314 1323 NC_000913 292019 T MOB 315 2076,2077 NC_000913 293207 IS2 -1 5 SNP 316 1324 NC_000913 297187 C SNP 317 1325 NC_000913 306294 T SNP 318 1326 NC_000913 309381 T SNP 319 1327 NC_000913 309985 A SNP 320 1328 NC_000913 321260 T SNP 321 1329 NC_000913 341180 T MOB 322 2064,2069 NC_000913 362204 IS1 -1 9 SNP 323 1330 NC_000913 410666 T SNP 324 1331 NC_000913 421027 T SNP 325 1333 NC_000913 472849 G SNP 326 1334 NC_000913 495622 T SNP 327 1335 NC_000913 500988 T SNP 328 1336 NC_000913 514434 T SNP 329 1337 NC_000913 534742 A DEL 330 2052,2072 NC_000913 575786 3398 mediated=IS5 SNP 331 1338 NC_000913 582597 T SNP 332 1339 NC_000913 602835 A SNP 333 1340 NC_000913 674259 A SNP 334 1341 NC_000913 677829 C SNP 335 1342 NC_000913 694941 A SNP 336 1343 NC_000913 696470 T SNP 337 1344 NC_000913 708774 A SNP 338 1345 NC_000913 721604 A SNP 339 1346 NC_000913 780624 T SNP 340 1347 NC_000913 789580 A MOB 341 2071,2073 NC_000913 820914 IS5 1 4 SNP 342 1348 NC_000913 822527 T SNP 343 1349 NC_000913 883396 T SNP 344 1350 NC_000913 908169 T SNP 345 1351 NC_000913 968252 A SNP 346 1352 NC_000913 1054855 A SNP 347 1353 NC_000913 1066699 T SNP 348 1354 NC_000913 1075234 T SNP 349 1355 NC_000913 1075528 T SNP 350 1356 NC_000913 1078268 T SNP 351 1357 NC_000913 1086153 T SNP 352 1358 NC_000913 1090508 T MOB 353 2074,2075 NC_000913 1105699 IS1 1 9 SNP 354 1359 NC_000913 1107209 T SNP 355 1360 NC_000913 1109740 T SNP 356 1361 NC_000913 1110033 A SNP 357 1362 NC_000913 1112209 T SNP 358 1363 NC_000913 1112421 T SNP 359 1364 NC_000913 1114389 T SNP 360 1365 NC_000913 1115185 T SNP 361 1366 NC_000913 1117707 A SNP 362 1367 NC_000913 1120111 A SNP 363 1368 NC_000913 1121547 A SNP 364 1369 NC_000913 1121762 A SUB 365 1370,1371 NC_000913 1123823 2 AG SNP 366 1372 NC_000913 1126316 A SNP 367 1373 NC_000913 1126518 T SNP 368 1374 NC_000913 1127334 A SNP 369 1375 NC_000913 1127338 A SNP 370 1376 NC_000913 1129796 A SNP 371 1377 NC_000913 1130210 A SNP 372 1378 NC_000913 1130803 T SNP 373 1379 NC_000913 1133273 A SNP 374 1380 NC_000913 1134466 T SNP 375 1381 NC_000913 1138152 T SNP 376 1382 NC_000913 1138533 T SNP 377 1383 NC_000913 1138831 T SNP 378 1384 NC_000913 1141865 A SNP 379 1385 NC_000913 1144974 T SNP 380 1386 NC_000913 1146110 T SNP 381 1387 NC_000913 1146384 G SNP 382 1388 NC_000913 1147792 A SNP 383 1389 NC_000913 1161403 A SNP 384 1390 NC_000913 1169836 G SNP 385 1391 NC_000913 1171417 A SNP 386 1393 NC_000913 1176602 T SNP 387 1394 NC_000913 1180126 A SNP 388 1395 NC_000913 1181995 A SNP 389 1396 NC_000913 1189980 G SNP 390 1397 NC_000913 1193141 A SNP 391 1398 NC_000913 1194922 A SNP 392 1399 NC_000913 1201548 C SNP 393 1400 NC_000913 1201550 A SNP 394 1401 NC_000913 1227656 A SNP 395 1402 NC_000913 1234947 G MOB 396 2083,2084 NC_000913 1235323 IS2 1 5 SNP 397 1403 NC_000913 1244908 T SNP 398 1404 NC_000913 1252059 T SNP 399 1405 NC_000913 1252663 T SNP 400 1406 NC_000913 1253002 T SNP 401 1407 NC_000913 1282857 T MOB 402 2085,2086 NC_000913 1291151 IS5 -1 4 SNP 403 1408 NC_000913 1306736 G SNP 404 1409 NC_000913 1308684 C SNP 405 1410 NC_000913 1323798 A SNP 406 1411 NC_000913 1325054 A SUB 407 1412,1413 NC_000913 1331059 2 AT SNP 408 1414 NC_000913 1337394 G SNP 409 1415 NC_000913 1341542 A SNP 410 1416 NC_000913 1358859 C SNP 411 1417 NC_000913 1375737 A SNP 412 1418 NC_000913 1405758 A DEL 413 2053,2088 NC_000913 1411925 23060 SNP 414 1419 NC_000913 1490095 A SUB 415 1420,1421,1422,1423 NC_000913 1497385 4 CAA SNP 416 1424 NC_000913 1629247 T SNP 417 1425 NC_000913 1632513 T SNP 418 1426 NC_000913 1643679 T SNP 419 1427 NC_000913 1652331 C MOB 420 2089,2091 NC_000913 1655874 IS2 1 5 SNP 421 1428 NC_000913 1660102 T SNP 422 1429 NC_000913 1667460 A SNP 423 1430 NC_000913 1894839 C SNP 424 1431 NC_000913 2040433 A DEL 425 1432 NC_000913 2111259 1 DEL 426 1433,1434 NC_000913 2173363 2 SNP 427 1435 NC_000913 2173448 T SNP 428 1436 NC_000913 2204395 A MOB 429 2093,2096 NC_000913 2238267 IS1 1 9 MOB 430 2098,2099 NC_000913 2320770 IS2 1 5 MOB 431 2094,2102 NC_000913 2320895 IS1 1 9 SNP 432 1438 NC_000913 2348366 A SNP 433 1439 NC_000913 2388753 A SNP 434 1440 NC_000913 2405980 A SNP 435 1441 NC_000913 2512423 T DEL 436 2055,2103 NC_000913 2558699 6790 SNP 437 1442 NC_000913 2577937 C SNP 438 1443 NC_000913 2582272 T SNP 439 1444 NC_000913 2587112 T SNP 440 1445 NC_000913 2600978 T SNP 441 1446 NC_000913 2613763 A SNP 442 1447 NC_000913 2623838 A SNP 443 1448 NC_000913 2632711 A MOB 444 2104,2105 NC_000913 2718617 IS2 -1 5 SNP 445 1449 NC_000913 2722946 A SNP 446 1450 NC_000913 2774947 A SNP 447 1451 NC_000913 2778119 T SNP 448 1452 NC_000913 2806897 A SNP 449 1453 NC_000913 2814595 T SNP 450 1454 NC_000913 2818331 A SNP 451 1455 NC_000913 2823616 A SNP 452 1457 NC_000913 2849941 A SNP 453 1458 NC_000913 2851821 A SNP 454 1459 NC_000913 2867455 A SNP 455 1460 NC_000913 2880635 C SNP 456 1461 NC_000913 2881212 T SNP 457 1462 NC_000913 2883115 A SNP 458 1463 NC_000913 2886731 C SNP 459 1464 NC_000913 2890626 A SNP 460 1465 NC_000913 2893219 T SNP 461 1466 NC_000913 2893647 T SNP 462 1467 NC_000913 2894839 T SNP 463 1468 NC_000913 2916216 A SNP 464 1469 NC_000913 2926772 A SNP 465 1471 NC_000913 2934092 A DEL 466 1472 NC_000913 3005153 1 DEL 467 1473 NC_000913 3025601 1 repeat_length=1 repeat_new_copies=4 repeat_ref_copies=5 repeat_seq=T SNP 468 1474 NC_000913 3070858 G SNP 469 1475 NC_000913 3096754 A DEL 470 2056,2101 NC_000913 3131341 16266 mediated=IS5 DEL 471 1476 NC_000913 3207549 1 SNP 472 1477 NC_000913 3256301 A SNP 473 1479 NC_000913 3279276 G SNP 474 1480 NC_000913 3296481 A SNP 475 1481 NC_000913 3329743 T SNP 476 1482 NC_000913 3364664 A SNP 477 1483 NC_000913 3388041 G SNP 478 1484 NC_000913 3411689 T SNP 479 1485 NC_000913 3433665 T SNP 480 1486 NC_000913 3433900 T SNP 481 1487 NC_000913 3441515 G SNP 482 1488 NC_000913 3474425 G SNP 483 1489 NC_000913 3481131 A SNP 484 1491 NC_000913 3486502 T SNP 485 1492 NC_000913 3500129 A SNP 486 1493 NC_000913 3511466 T SNP 487 1494 NC_000913 3517171 A SUB 488 1495,1496 NC_000913 3555047 2 TG SNP 489 1497 NC_000913 3560362 A INS 490 1498 NC_000913 3560455 G SNP 491 1499 NC_000913 3591074 A SNP 492 1500 NC_000913 3630221 T SNP 493 1501 NC_000913 3646970 T SNP 494 1502 NC_000913 3647428 T SNP 495 1503 NC_000913 3647949 T SNP 496 1504 NC_000913 3664594 A SNP 497 1505 NC_000913 3665576 T SNP 498 1506 NC_000913 3707883 A SNP 499 1507 NC_000913 3707947 A SNP 500 1508 NC_000913 3719429 A SNP 501 1509 NC_000913 3725176 G SUB 502 1510,1511 NC_000913 3729440 2 TT SNP 503 1512 NC_000913 3730560 T SNP 504 1513 NC_000913 3770539 T DEL 505 1514 NC_000913 3773173 1 SNP 506 1515 NC_000913 3773176 T INS 507 1516 NC_000913 3815883 C SNP 508 1517 NC_000913 3834564 A SNP 509 1518 NC_000913 3926991 A SNP 510 1519 NC_000913 3931779 C SUB 511 1520,1521 NC_000913 3966530 2 TT SNP 512 1522 NC_000913 3967770 T SNP 513 1524 NC_000913 4133252 T MOB 514 2111,2112 NC_000913 4147156 IS2 -1 5 SNP 515 1525 NC_000913 4193996 G SNP 516 1526 NC_000913 4215670 T SNP 517 1527 NC_000913 4223638 C SNP 518 1528 NC_000913 4238232 T SNP 519 1529 NC_000913 4272711 T SNP 520 1530 NC_000913 4275204 T SNP 521 1531 NC_000913 4276212 T SNP 522 1532 NC_000913 4276422 T SNP 523 1533 NC_000913 4281093 A SNP 524 1534 NC_000913 4283043 A SNP 525 1535 NC_000913 4283465 A SNP 526 1536 NC_000913 4284646 A SNP 527 1537 NC_000913 4285238 A SNP 528 1538 NC_000913 4288385 A INS 529 1539,1540 NC_000913 4296381 GC SNP 530 1541 NC_000913 4296428 A SNP 531 1542 NC_000913 4297782 A SNP 532 1543 NC_000913 4298401 A SNP 533 1544 NC_000913 4306035 T SNP 534 1545 NC_000913 4306960 A SNP 535 1546 NC_000913 4307151 A SNP 536 1547 NC_000913 4318215 A SNP 537 1548 NC_000913 4320007 A SNP 538 1549 NC_000913 4320344 A SNP 539 1550 NC_000913 4320416 A SNP 540 1551 NC_000913 4320543 A SNP 541 1552 NC_000913 4321488 A SNP 542 1553 NC_000913 4321603 C SNP 543 1554 NC_000913 4322786 A SNP 544 1555 NC_000913 4325644 T SNP 545 1556 NC_000913 4328622 C SNP 546 1557 NC_000913 4331890 T SNP 547 1559 NC_000913 4340953 T SNP 548 1560 NC_000913 4344501 A SNP 549 1561 NC_000913 4344935 A SNP 550 1562 NC_000913 4363184 T SNP 551 1564 NC_000913 4390331 T SNP 552 1565 NC_000913 4402938 A SNP 553 1566 NC_000913 4410859 T SNP 554 1567 NC_000913 4414192 A SNP 555 1568 NC_000913 4430584 T SNP 556 1569 NC_000913 4431220 T SNP 557 1570 NC_000913 4437890 T SNP 558 1571 NC_000913 4439578 A SNP 559 1572 NC_000913 4440768 A SNP 560 1573 NC_000913 4445315 T SNP 561 1574 NC_000913 4445924 T SNP 562 1575 NC_000913 4446482 T SNP 563 1576 NC_000913 4448304 T SNP 564 1577 NC_000913 4463952 A SNP 565 1578 NC_000913 4473900 T SNP 566 1579 NC_000913 4475493 C SNP 567 1580 NC_000913 4476605 A SNP 568 1581 NC_000913 4489016 T SNP 569 1582 NC_000913 4492470 A INS 570 1583 NC_000913 4492583 G repeat_length=1 repeat_new_copies=7 repeat_ref_copies=6 repeat_seq=G SNP 571 1584 NC_000913 4495194 T SNP 572 1585 NC_000913 4496168 T SNP 573 1586 NC_000913 4496885 A DEL 574 2058,2114 NC_000913 4498182 1336 mediated=IS2 SNP 575 1587 NC_000913 4507424 C SNP 576 1613 NC_000913 4510238 G SNP 577 1614 NC_000913 4512293 C SNP 578 1615 NC_000913 4512501 T SNP 579 1616 NC_000913 4512642 C SNP 580 1617 NC_000913 4513044 C SNP 581 1618 NC_000913 4513841 G SNP 582 1619 NC_000913 4514139 C SNP 583 1620 NC_000913 4514287 C SNP 584 1621 NC_000913 4514983 C SNP 585 1622 NC_000913 4515348 C SNP 586 1623 NC_000913 4516110 T SNP 587 1624 NC_000913 4516378 A SNP 588 1625 NC_000913 4516632 C SNP 589 1626 NC_000913 4516959 T SNP 590 1627 NC_000913 4517127 A SNP 591 1628 NC_000913 4518627 A SNP 592 1629 NC_000913 4518681 C SNP 593 1630 NC_000913 4518793 T SNP 594 1631 NC_000913 4530252 A SNP 595 1632 NC_000913 4532063 T SNP 596 1633 NC_000913 4535073 G SNP 597 1634 NC_000913 4535189 T SNP 598 1635 NC_000913 4540111 G SNP 599 1636 NC_000913 4540114 T SNP 600 1637 NC_000913 4540431 C MOB 601 2108,2109 NC_000913 4541425 IS1 -1 8 DEL 602 1638 NC_000913 4542683 1 INS 603 1639 NC_000913 4542692 A SNP 604 1640 NC_000913 4543047 G SNP 605 1641 NC_000913 4544464 T SNP 606 1642 NC_000913 4546272 C SNP 607 1643 NC_000913 4549223 G SNP 608 1644 NC_000913 4553609 A SNP 609 1645 NC_000913 4556917 G SNP 610 1646 NC_000913 4560309 A SNP 611 1647 NC_000913 4563567 C SNP 612 1648 NC_000913 4564141 G SNP 613 1649 NC_000913 4567272 A SNP 614 1650 NC_000913 4569307 C SNP 615 1652 NC_000913 4591674 G SNP 616 1653 NC_000913 4591677 C SNP 617 1654 NC_000913 4591930 C SNP 618 1655 NC_000913 4591974 A SNP 619 1656 NC_000913 4592082 A SNP 620 1657 NC_000913 4592188 T DEL 621 1658 NC_000913 4595570 1 repeat_length=1 repeat_new_copies=5 repeat_ref_copies=6 repeat_seq=A SNP 622 1659 NC_000913 4602089 T SNP 623 1660 NC_000913 4605702 C SNP 624 1661 NC_000913 4605791 G SNP 625 1662 NC_000913 4614170 T SNP 626 1663 NC_000913 4616022 C SNP 627 1664 NC_000913 4616073 C SNP 628 1665 NC_000913 4616514 G SNP 629 1666 NC_000913 4616535 G SNP 630 1667 NC_000913 4616648 T SNP 631 1668 NC_000913 4616682 T SNP 632 1669 NC_000913 4617053 C SNP 633 1670 NC_000913 4617138 A SNP 634 1671 NC_000913 4617238 A SNP 635 1672 NC_000913 4617409 A SNP 636 1673 NC_000913 4617412 T SNP 637 1674 NC_000913 4617415 T SNP 638 1675 NC_000913 4617436 C SNP 639 1676 NC_000913 4617499 A SNP 640 1677 NC_000913 4617532 T SNP 641 1678 NC_000913 4617565 T SNP 642 1679 NC_000913 4617574 A SNP 643 1680 NC_000913 4617616 C SNP 644 1681 NC_000913 4617631 G SNP 645 1682 NC_000913 4617928 A SNP 646 1683 NC_000913 4617976 C SNP 647 1684 NC_000913 4618030 T SNP 648 1685 NC_000913 4618055 T SNP 649 1686 NC_000913 4618069 C SNP 650 1687 NC_000913 4618075 T SNP 651 1688 NC_000913 4618276 A SNP 652 1689 NC_000913 4618312 C SNP 653 1690 NC_000913 4618483 T SNP 654 1691 NC_000913 4618489 T SNP 655 1692 NC_000913 4618702 C SNP 656 1693 NC_000913 4618717 G SNP 657 1694 NC_000913 4618804 G SNP 658 1695 NC_000913 4619026 G SNP 659 1696 NC_000913 4619080 T SNP 660 1697 NC_000913 4619131 A SNP 661 1698 NC_000913 4619134 A SNP 662 1699 NC_000913 4619197 A SNP 663 1700 NC_000913 4619335 T SNP 664 1701 NC_000913 4619338 T SNP 665 1702 NC_000913 4619359 T SNP 666 1703 NC_000913 4619393 T SNP 667 1704 NC_000913 4619454 G SNP 668 1705 NC_000913 4619917 C SNP 669 1706 NC_000913 4620067 G SNP 670 1707 NC_000913 4620145 C SNP 671 1708 NC_000913 4620150 G SNP 672 1709 NC_000913 4620154 C SNP 673 1710 NC_000913 4620157 T SNP 674 1711 NC_000913 4620160 C SNP 675 1712 NC_000913 4620223 C SNP 676 1713 NC_000913 4620256 T SNP 677 1714 NC_000913 4620358 T SNP 678 1715 NC_000913 4620385 A SNP 679 1716 NC_000913 4620415 G SNP 680 1717 NC_000913 4620427 A SNP 681 1718 NC_000913 4620559 T SNP 682 1719 NC_000913 4620571 G SNP 683 1720 NC_000913 4620637 T SNP 684 1721 NC_000913 4620652 T SNP 685 1722 NC_000913 4620706 T SNP 686 1723 NC_000913 4620709 C SNP 687 1724 NC_000913 4620742 C SNP 688 1725 NC_000913 4620763 T SNP 689 1726 NC_000913 4620766 T SUB 690 2115 NC_000913 4620828 43 AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT SNP 691 1727 NC_000913 4621236 T SNP 692 1728 NC_000913 4621278 T SNP 693 1729 NC_000913 4621296 G SNP 694 1730 NC_000913 4621302 C SNP 695 1731 NC_000913 4621305 G SNP 696 1732 NC_000913 4621321 G SNP 697 1733 NC_000913 4621410 C SNP 698 1734 NC_000913 4621458 G SNP 699 1735 NC_000913 4621491 G SNP 700 1736 NC_000913 4621542 C SNP 701 1737 NC_000913 4621616 A SUB 702 1738,1739 NC_000913 4621624 2 AC SNP 703 1740 NC_000913 4621627 T SNP 704 1741 NC_000913 4621629 G SNP 705 1742 NC_000913 4621633 T SNP 706 1743 NC_000913 4621644 A SNP 707 1744 NC_000913 4623119 T SNP 708 1745 NC_000913 4623125 C SNP 709 1746 NC_000913 4623127 T SNP 710 1747 NC_000913 4623131 C SNP 711 1748 NC_000913 4623136 T SNP 712 1749 NC_000913 4623155 G SNP 713 1750 NC_000913 4623188 T SNP 714 1751 NC_000913 4623203 C SNP 715 1752 NC_000913 4623230 C SNP 716 1753 NC_000913 4623336 C SNP 717 1754 NC_000913 4623404 A SNP 718 1755 NC_000913 4623448 C SNP 719 1756 NC_000913 4623470 T SNP 720 1757 NC_000913 4623473 A SNP 721 1758 NC_000913 4623502 T SNP 722 1759 NC_000913 4623544 G SNP 723 1760 NC_000913 4623575 C SNP 724 1761 NC_000913 4623578 T SNP 725 1762 NC_000913 4623581 G SNP 726 1763 NC_000913 4623641 A SNP 727 1764 NC_000913 4623656 C SNP 728 1765 NC_000913 4623680 A SNP 729 1766 NC_000913 4623707 T SNP 730 1767 NC_000913 4623732 G SNP 731 1768 NC_000913 4623758 C SNP 732 1769 NC_000913 4623782 A SNP 733 1770 NC_000913 4623821 G SNP 734 1771 NC_000913 4623911 T SNP 735 1772 NC_000913 4623983 C SNP 736 1773 NC_000913 4624037 C SNP 737 1774 NC_000913 4624055 C SNP 738 1775 NC_000913 4624226 A SNP 739 1776 NC_000913 4624262 G SNP 740 1777 NC_000913 4624277 A SNP 741 1778 NC_000913 4624355 C SNP 742 1779 NC_000913 4624388 C SNP 743 1780 NC_000913 4624391 G SNP 744 1781 NC_000913 4624400 T SNP 745 1782 NC_000913 4624430 C SNP 746 1783 NC_000913 4624487 G SNP 747 1784 NC_000913 4624517 G SNP 748 1785 NC_000913 4624586 C SNP 749 1786 NC_000913 4624622 T SNP 750 1787 NC_000913 4624670 T SNP 751 1788 NC_000913 4625044 G SNP 752 1789 NC_000913 4625158 G SNP 753 1790 NC_000913 4625170 T SNP 754 1791 NC_000913 4625179 A SNP 755 1792 NC_000913 4625242 C SNP 756 1793 NC_000913 4625248 T SNP 757 1794 NC_000913 4625377 C SNP 758 1795 NC_000913 4625533 T SNP 759 1796 NC_000913 4625546 T SNP 760 1797 NC_000913 4626042 C SNP 761 1798 NC_000913 4626245 T SNP 762 1799 NC_000913 4626247 G SNP 763 1800 NC_000913 4626391 G SNP 764 1801 NC_000913 4626487 C SNP 765 1802 NC_000913 4626521 C SNP 766 1803 NC_000913 4626526 G SNP 767 1804 NC_000913 4626565 T SNP 768 1805 NC_000913 4626568 A SNP 769 1806 NC_000913 4626586 C SNP 770 1807 NC_000913 4626595 G SNP 771 1808 NC_000913 4626601 T SNP 772 1809 NC_000913 4626670 T SNP 773 1810 NC_000913 4626673 A SNP 774 1811 NC_000913 4626784 A SNP 775 1812 NC_000913 4626802 C SNP 776 1813 NC_000913 4626808 C SNP 777 1814 NC_000913 4626820 G SUB 778 1815,1816 NC_000913 4626838 2 GT SNP 779 1817 NC_000913 4626886 T SNP 780 1818 NC_000913 4626889 G SNP 781 1819 NC_000913 4626943 C SNP 782 1820 NC_000913 4627027 C SNP 783 1821 NC_000913 4627069 T SNP 784 1822 NC_000913 4627084 A SNP 785 1823 NC_000913 4627159 T SNP 786 1824 NC_000913 4627162 A SNP 787 1825 NC_000913 4627213 A SUB 788 1826,1827 NC_000913 4627299 2 GA SNP 789 1828 NC_000913 4627377 G SNP 790 1829 NC_000913 4627509 C SNP 791 1830 NC_000913 4627512 T SNP 792 1831 NC_000913 4627518 G SNP 793 1832 NC_000913 4627539 G SNP 794 1833 NC_000913 4627593 A SNP 795 1834 NC_000913 4627626 C SNP 796 1835 NC_000913 4627629 T SNP 797 1836 NC_000913 4627641 T SNP 798 1837 NC_000913 4627650 C SNP 799 1838 NC_000913 4627653 T SNP 800 1839 NC_000913 4627668 C SNP 801 1840 NC_000913 4627689 C SNP 802 1841 NC_000913 4627698 A SNP 803 1842 NC_000913 4627818 G SNP 804 1843 NC_000913 4627824 T SNP 805 1844 NC_000913 4627833 C SNP 806 1845 NC_000913 4627893 T SNP 807 1846 NC_000913 4627986 G SNP 808 1847 NC_000913 4628001 C SNP 809 1848 NC_000913 4628007 A SNP 810 1849 NC_000913 4628028 T SNP 811 1850 NC_000913 4628082 T SNP 812 1851 NC_000913 4628106 T SNP 813 1852 NC_000913 4628160 C SNP 814 1853 NC_000913 4628163 T SNP 815 1854 NC_000913 4628190 A SNP 816 1855 NC_000913 4628208 A SNP 817 1856 NC_000913 4628232 G SNP 818 1857 NC_000913 4628238 T SNP 819 1858 NC_000913 4628241 C SNP 820 1859 NC_000913 4628244 T SNP 821 1860 NC_000913 4628256 T SNP 822 1861 NC_000913 4628259 C SNP 823 1862 NC_000913 4628289 T SNP 824 1863 NC_000913 4628292 G SNP 825 1864 NC_000913 4628304 A SNP 826 1865 NC_000913 4628311 T SNP 827 1866 NC_000913 4628442 G SNP 828 1867 NC_000913 4628463 C SNP 829 1868 NC_000913 4628481 C SNP 830 1869 NC_000913 4628487 T SNP 831 1870 NC_000913 4628493 C SNP 832 1871 NC_000913 4628514 G SNP 833 1872 NC_000913 4628551 C SNP 834 1873 NC_000913 4628560 G SNP 835 1874 NC_000913 4628583 A DEL 836 1875 NC_000913 4628592 1 repeat_length=1 repeat_new_copies=6 repeat_ref_copies=7 repeat_seq=T SNP 837 1876 NC_000913 4628668 T SNP 838 1877 NC_000913 4628678 C SNP 839 1878 NC_000913 4628683 A SNP 840 1879 NC_000913 4628699 G SNP 841 1880 NC_000913 4628707 A SNP 842 1881 NC_000913 4628710 C SNP 843 1882 NC_000913 4628721 T SUB 844 1883,1884 NC_000913 4628778 2 GG SNP 845 1885 NC_000913 4628782 A SNP 846 1886 NC_000913 4628785 C SNP 847 1887 NC_000913 4628802 T SNP 848 1888 NC_000913 4628805 T SNP 849 1889 NC_000913 4628807 G SNP 850 1890 NC_000913 4628831 A SNP 851 1891 NC_000913 4628897 T SNP 852 1892 NC_000913 4628939 A SNP 853 1893 NC_000913 4628984 G SNP 854 1894 NC_000913 4628990 G SNP 855 1895 NC_000913 4629188 A SNP 856 1896 NC_000913 4629281 A SNP 857 1897 NC_000913 4629356 T SNP 858 1898 NC_000913 4629377 T SNP 859 1899 NC_000913 4629446 G SNP 860 1900 NC_000913 4629473 T SNP 861 1901 NC_000913 4629476 C SNP 862 1902 NC_000913 4629515 G SNP 863 1903 NC_000913 4629521 A SNP 864 1904 NC_000913 4629524 G SNP 865 1905 NC_000913 4629635 C SNP 866 1906 NC_000913 4629647 T SNP 867 1907 NC_000913 4629674 G SNP 868 1908 NC_000913 4629686 T SNP 869 1909 NC_000913 4629689 C SNP 870 1910 NC_000913 4629701 C SNP 871 1911 NC_000913 4629716 G SNP 872 1912 NC_000913 4629797 G SNP 873 1913 NC_000913 4629887 C SNP 874 1914 NC_000913 4629896 C SNP 875 1915 NC_000913 4630022 C SNP 876 1916 NC_000913 4630106 G SNP 877 1917 NC_000913 4630238 A SNP 878 1918 NC_000913 4630304 G SNP 879 1919 NC_000913 4630385 A SNP 880 1920 NC_000913 4630400 G SNP 881 1921 NC_000913 4630553 G SUB 882 1922,1923 NC_000913 4630602 2 TT SNP 883 1924 NC_000913 4630615 T SNP 884 1925 NC_000913 4630837 C SNP 885 1926 NC_000913 4630912 A SNP 886 1927 NC_000913 4630921 A SNP 887 1928 NC_000913 4630945 T SNP 888 1929 NC_000913 4630960 C SNP 889 1930 NC_000913 4630984 T SNP 890 1931 NC_000913 4631146 A SNP 891 1932 NC_000913 4631245 T SNP 892 1933 NC_000913 4631323 T SNP 893 1934 NC_000913 4633009 A SNP 894 1935 NC_000913 4634882 T SNP 895 1936 NC_000913 4635658 C SNP 896 1937 NC_000913 4635706 A SNP 897 1938 NC_000913 4635757 T SNP 898 1939 NC_000913 4635889 C SNP 899 1940 NC_000913 4636139 C SUB 900 1941,1942 NC_000913 4636146 2 CT SNP 901 1943 NC_000913 4636175 T SNP 902 1944 NC_000913 4636180 T SNP 903 1945 NC_000913 4636186 C SNP 904 1946 NC_000913 4636201 A SNP 905 1947 NC_000913 4636309 T SNP 906 1948 NC_000913 4636385 T SNP 907 1949 NC_000913 4636411 T SNP 908 1950 NC_000913 4636466 A SNP 909 1951 NC_000913 4636474 G SNP 910 1952 NC_000913 4636493 C SNP 911 1953 NC_000913 4636513 G SNP 912 1954 NC_000913 4636516 A SNP 913 1955 NC_000913 4636543 A SNP 914 1956 NC_000913 4636555 G SNP 915 1957 NC_000913 4636591 T SNP 916 1958 NC_000913 4636610 T SNP 917 1959 NC_000913 4636717 C SNP 918 1960 NC_000913 4636749 G SNP 919 1961 NC_000913 4636767 T SNP 920 1962 NC_000913 4636821 A SNP 921 1963 NC_000913 4636827 T SNP 922 1964 NC_000913 4636993 T SNP 923 1965 NC_000913 4637001 T SNP 924 1966 NC_000913 4637037 G SNP 925 1967 NC_000913 4637133 G SNP 926 1968 NC_000913 4637151 G SNP 927 1969 NC_000913 4637269 C SNP 928 1970 NC_000913 4637322 C SNP 929 1971 NC_000913 4637346 C SNP 930 1972 NC_000913 4637379 T SNP 931 1973 NC_000913 4637382 T SNP 932 1974 NC_000913 4637385 A SNP 933 1975 NC_000913 4637391 C SNP 934 1976 NC_000913 4637409 G SNP 935 1977 NC_000913 4637412 T SNP 936 1978 NC_000913 4637478 T SNP 937 1979 NC_000913 4637481 G SNP 938 1980 NC_000913 4637487 C SNP 939 1981 NC_000913 4637523 C SNP 940 1982 NC_000913 4637553 A SNP 941 1983 NC_000913 4637577 C SNP 942 1984 NC_000913 4637675 T SNP 943 1985 NC_000913 4637697 T SNP 944 1986 NC_000913 4637742 C SNP 945 1987 NC_000913 4637751 A SNP 946 1988 NC_000913 4637759 T SNP 947 1989 NC_000913 4637766 T SNP 948 1990 NC_000913 4637775 T SNP 949 1991 NC_000913 4637814 G SNP 950 1992 NC_000913 4637857 C SNP 951 1993 NC_000913 4637862 A SNP 952 1994 NC_000913 4637896 G SNP 953 1995 NC_000913 4637898 C SNP 954 1996 NC_000913 4637943 G SNP 955 1997 NC_000913 4637976 G SNP 956 1998 NC_000913 4638142 C SNP 957 1999 NC_000913 4638210 C SNP 958 2000 NC_000913 4638212 C SNP 959 2001 NC_000913 4638214 T SNP 960 2002 NC_000913 4638264 A SNP 961 2003 NC_000913 4638282 C SNP 962 2004 NC_000913 4638354 T SNP 963 2005 NC_000913 4638532 C SNP 964 2006 NC_000913 4638567 G SNP 965 2007 NC_000913 4638587 T SNP 966 2008 NC_000913 4638600 C SNP 967 2009 NC_000913 4638735 C SNP 968 2010 NC_000913 4638818 C SNP 969 2011 NC_000913 4638883 T SNP 970 2012 NC_000913 4638885 G SNP 971 2013 NC_000913 4638927 A SNP 972 2014 NC_000913 4639005 C SNP 973 2015 NC_000913 4639023 G SNP 974 2016 NC_000913 4639053 G SNP 975 2017 NC_000913 4639217 T SNP 976 2018 NC_000913 4639261 T SNP 977 2019 NC_000913 4639284 G SNP 978 2020 NC_000913 4639299 C SNP 979 2021 NC_000913 4639303 C SNP 980 2022 NC_000913 4639440 T SNP 981 2023 NC_000913 4639502 T SNP 982 2024 NC_000913 4639510 C SNP 983 2025 NC_000913 4639512 A SNP 984 2026 NC_000913 4639608 A SNP 985 2027 NC_000913 4639632 G SNP 986 2028 NC_000913 4639719 T SNP 987 2029 NC_000913 4639764 A SNP 988 2030 NC_000913 4639956 C SNP 989 2031 NC_000913 4640785 T SNP 990 2032 NC_000913 4640864 G SNP 991 2033 NC_000913 4640908 T SNP 992 2034 NC_000913 4640924 G SNP 993 2035 NC_000913 4641022 T SNP 994 2036 NC_000913 4641031 A SNP 995 2037 NC_000913 4641131 C SNP 996 2038 NC_000913 4641208 T SNP 997 2039 NC_000913 4641217 A SNP 998 2040 NC_000913 4641226 A SNP 999 2041 NC_000913 4641296 C SNP 1000 2042 NC_000913 4641352 A SNP 1001 2043 NC_000913 4641382 A SNP 1002 2044 NC_000913 4641428 A SUB 1003 2045,2046 NC_000913 4641439 2 CA SNP 1004 2047 NC_000913 4641483 T SNP 1005 2048 NC_000913 4641488 G SNP 1006 2049 NC_000913 4641544 G RA 1007 . NC_000913 310 0 T . bias_e_value=3657660 bias_p_value=0.788009 consensus_score=126.6 fisher_strand_p_value=0.424242 frequency=1 ks_quality_p_value=1 major_base=. major_cov=19/13 major_frequency=9.697e-01 minor_base=C minor_cov=0/1 new_cov=19/13 polymorphism_frequency=9.697e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/0 total_cov=19/14 RA 1008 . NC_000913 393 0 T G consensus_score=113.1 frequency=1 major_base=G major_cov=22/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/15 RA 1009 . NC_000913 588 0 G A bias_e_value=3856010 bias_p_value=0.830741 consensus_score=158.5 fisher_strand_p_value=0.511111 frequency=1 ks_quality_p_value=0.934972 major_base=A major_cov=31/22 major_frequency=9.636e-01 minor_base=T minor_cov=2/0 new_cov=31/22 polymorphism_frequency=9.636e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=0/0 total_cov=34/22 RA 1010 . NC_000913 774 0 T C consensus_score=124.7 frequency=1 major_base=C major_cov=33/5 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/5 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/5 RA 1011 . NC_000913 867 0 C T bias_e_value=1616440 bias_p_value=0.348247 consensus_score=101.2 fisher_strand_p_value=0.108108 frequency=1 ks_quality_p_value=0.9985 major_base=T major_cov=33/3 major_frequency=9.730e-01 minor_base=G minor_cov=0/1 new_cov=33/3 polymorphism_frequency=9.730e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/4 RA 1012 . NC_000913 939 0 G A consensus_score=131.2 frequency=1 major_base=A major_cov=31/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/14 RA 1013 . NC_000913 966 0 T C bias_e_value=4641190 bias_p_value=0.9999 consensus_score=149.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.985916 major_base=C major_cov=29/18 major_frequency=9.792e-01 minor_base=A minor_cov=1/0 new_cov=29/18 polymorphism_frequency=9.792e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/18 RA 1014 . NC_000913 969 0 T G bias_e_value=3447870 bias_p_value=0.742811 consensus_score=147.0 fisher_strand_p_value=0.375 frequency=1 ks_quality_p_value=1 major_base=G major_cov=30/17 major_frequency=9.792e-01 minor_base=T minor_cov=0/1 new_cov=30/17 polymorphism_frequency=9.792e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=30/18 RA 1015 . NC_000913 1206 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=154.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=27/28 major_frequency=9.821e-01 minor_base=G minor_cov=0/1 new_cov=27/28 polymorphism_frequency=9.821e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=29/29 RA 1016 . NC_000913 1278 0 C T bias_e_value=2906710 bias_p_value=0.626223 consensus_score=179.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.27207 major_base=T major_cov=34/25 major_frequency=9.833e-01 minor_base=C minor_cov=1/0 new_cov=34/25 polymorphism_frequency=9.833e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=35/25 RA 1017 . NC_000913 1299 0 T C bias_e_value=2873320 bias_p_value=0.619031 consensus_score=188.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.266588 major_base=C major_cov=35/26 major_frequency=9.839e-01 minor_base=T minor_cov=1/0 new_cov=35/26 polymorphism_frequency=9.839e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=36/26 RA 1018 . NC_000913 1302 0 T C bias_e_value=4591430 bias_p_value=0.989181 consensus_score=172.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.856553 major_base=C major_cov=35/25 major_frequency=9.677e-01 minor_base=T minor_cov=1/1 new_cov=35/25 polymorphism_frequency=9.677e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=1/1 total_cov=36/26 RA 1019 . NC_000913 1323 0 C T bias_e_value=2334950 bias_p_value=0.503044 consensus_score=188.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.188501 major_base=T major_cov=36/27 major_frequency=9.844e-01 minor_base=C minor_cov=1/0 new_cov=36/27 polymorphism_frequency=9.844e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=37/27 RA 1020 . NC_000913 1341 0 C G bias_e_value=2660720 bias_p_value=0.573226 consensus_score=170.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.233558 major_base=G major_cov=33/31 major_frequency=9.846e-01 minor_base=C minor_cov=1/0 new_cov=33/31 polymorphism_frequency=9.846e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=1/0 total_cov=34/31 RA 1021 . NC_000913 1407 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=209.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=37/31 major_frequency=9.714e-01 minor_base=G minor_cov=1/1 new_cov=37/31 polymorphism_frequency=9.714e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=39/32 RA 1022 . NC_000913 1425 0 A G consensus_score=239.9 frequency=1 major_base=G major_cov=42/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/35 RA 1023 . NC_000913 1509 0 A G bias_e_value=4636170 bias_p_value=0.99882 consensus_score=224.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.951808 major_base=G major_cov=35/36 major_frequency=9.726e-01 minor_base=A minor_cov=1/1 new_cov=35/36 polymorphism_frequency=9.726e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=1/1 total_cov=36/37 RA 1024 . NC_000913 1593 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=195.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=32/38 major_frequency=9.722e-01 minor_base=T minor_cov=1/1 new_cov=32/38 polymorphism_frequency=9.722e-01 polymorphism_score=NA prediction=consensus ref_cov=1/1 total_cov=35/40 RA 1025 . NC_000913 1797 0 G A bias_e_value=3580400 bias_p_value=0.771363 consensus_score=252.0 fisher_strand_p_value=0.409639 frequency=1 ks_quality_p_value=0.989477 major_base=A major_cov=33/49 major_frequency=9.880e-01 minor_base=G minor_cov=1/0 new_cov=33/49 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=34/49 RA 1026 . NC_000913 1860 0 T A bias_e_value=2171750 bias_p_value=0.467884 consensus_score=214.7 fisher_strand_p_value=0.168116 frequency=1 ks_quality_p_value=1 major_base=A major_cov=27/41 major_frequency=9.714e-01 minor_base=C minor_cov=2/0 new_cov=27/41 polymorphism_frequency=9.714e-01 polymorphism_score=NA prediction=consensus ref_cov=1/1 total_cov=30/42 RA 1027 . NC_000913 1875 0 A G bias_e_value=3921960 bias_p_value=0.844949 consensus_score=209.4 fisher_strand_p_value=0.565583 frequency=1 ks_quality_p_value=0.879913 major_base=G major_cov=27/40 major_frequency=9.571e-01 minor_base=A minor_cov=2/1 new_cov=27/40 polymorphism_frequency=9.571e-01 polymorphism_score=-1.4 prediction=consensus ref_cov=2/1 total_cov=29/41 RA 1028 . NC_000913 1884 0 T A bias_e_value=4455160 bias_p_value=0.959821 consensus_score=206.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.730262 major_base=A major_cov=26/39 major_frequency=9.701e-01 minor_base=T minor_cov=1/1 new_cov=26/39 polymorphism_frequency=9.701e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/1 total_cov=27/40 RA 1029 . NC_000913 2038 0 C T bias_e_value=4039940 bias_p_value=0.870367 consensus_score=165.0 fisher_strand_p_value=0.536341 frequency=1 ks_quality_p_value=0.999681 major_base=T major_cov=20/35 major_frequency=9.649e-01 minor_base=C minor_cov=0/2 new_cov=20/35 polymorphism_frequency=9.649e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/2 total_cov=20/37 RA 1030 . NC_000913 2108 0 A T consensus_score=183.6 frequency=1 major_base=T major_cov=26/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/32 RA 1031 . NC_000913 2116 0 T C consensus_score=174.5 frequency=1 major_base=C major_cov=24/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/31 RA 1032 . NC_000913 2211 0 A T consensus_score=172.0 frequency=1 major_base=T major_cov=27/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/29 RA 1033 . NC_000913 2247 0 T A bias_e_value=4641630 bias_p_value=0.999996 consensus_score=161.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997101 major_base=A major_cov=26/26 major_frequency=9.811e-01 minor_base=T minor_cov=1/0 new_cov=26/26 polymorphism_frequency=9.811e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=27/26 RA 1034 . NC_000913 2307 0 C T consensus_score=177.4 frequency=1 major_base=T major_cov=30/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/25 RA 1035 . NC_000913 2310 0 G T bias_e_value=3773360 bias_p_value=0.812935 consensus_score=170.8 fisher_strand_p_value=0.454545 frequency=1 ks_quality_p_value=1 major_base=T major_cov=30/24 major_frequency=9.818e-01 minor_base=G minor_cov=0/1 new_cov=30/24 polymorphism_frequency=9.818e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=30/25 RA 1036 . NC_000913 2343 0 C T bias_e_value=3379620 bias_p_value=0.728108 consensus_score=162.6 fisher_strand_p_value=0.604545 frequency=1 ks_quality_p_value=0.595997 major_base=T major_cov=25/28 major_frequency=9.464e-01 minor_base=C minor_cov=2/1 new_cov=25/28 polymorphism_frequency=9.464e-01 polymorphism_score=0.3 prediction=consensus ref_cov=2/1 total_cov=28/31 RA 1037 . NC_000913 2373 0 G A bias_e_value=3578290 bias_p_value=0.770908 consensus_score=189.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.404825 major_base=A major_cov=27/33 major_frequency=9.677e-01 minor_base=G minor_cov=1/1 new_cov=27/33 polymorphism_frequency=9.677e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=1/1 total_cov=29/34 RA 1038 . NC_000913 2382 0 A G bias_e_value=4632950 bias_p_value=0.998125 consensus_score=197.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.939399 major_base=G major_cov=29/34 major_frequency=9.692e-01 minor_base=A minor_cov=1/1 new_cov=29/34 polymorphism_frequency=9.692e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/1 total_cov=30/35 RA 1039 . NC_000913 2469 0 C T bias_e_value=2406120 bias_p_value=0.518376 consensus_score=165.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.197825 major_base=T major_cov=23/31 major_frequency=9.643e-01 minor_base=C minor_cov=1/1 new_cov=23/31 polymorphism_frequency=9.643e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=1/1 total_cov=24/32 RA 1040 . NC_000913 2508 0 A G bias_e_value=3666800 bias_p_value=0.789977 consensus_score=170.9 fisher_strand_p_value=0.573758 frequency=1 ks_quality_p_value=0.743422 major_base=G major_cov=24/33 major_frequency=9.500e-01 minor_base=A minor_cov=2/1 new_cov=24/33 polymorphism_frequency=9.500e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=2/1 total_cov=26/34 RA 1041 . NC_000913 2595 0 C T bias_e_value=3784590 bias_p_value=0.815355 consensus_score=188.0 fisher_strand_p_value=0.457627 frequency=1 ks_quality_p_value=1 major_base=T major_cov=26/32 major_frequency=9.831e-01 minor_base=G minor_cov=1/0 new_cov=26/32 polymorphism_frequency=9.831e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/32 RA 1042 . NC_000913 2597 0 T C consensus_score=188.0 frequency=1 major_base=C major_cov=27/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/32 RA 1043 . NC_000913 2676 0 C T bias_e_value=3531870 bias_p_value=0.760909 consensus_score=203.6 fisher_strand_p_value=0.409091 frequency=1 ks_quality_p_value=0.962942 major_base=T major_cov=39/26 major_frequency=9.848e-01 minor_base=A minor_cov=0/1 new_cov=39/26 polymorphism_frequency=9.848e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/27 RA 1044 . NC_000913 2709 0 A G consensus_score=204.2 frequency=1 major_base=G major_cov=38/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/28 RA 1045 . NC_000913 2760 0 T C bias_e_value=4635870 bias_p_value=0.998755 consensus_score=176.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.950514 major_base=C major_cov=28/28 major_frequency=9.825e-01 minor_base=A minor_cov=0/1 new_cov=28/28 polymorphism_frequency=9.825e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/29 RA 1046 . NC_000913 3025 0 A G bias_e_value=3478460 bias_p_value=0.749402 consensus_score=168.6 fisher_strand_p_value=0.656221 frequency=1 ks_quality_p_value=0.581789 major_base=G major_cov=28/34 major_frequency=9.254e-01 minor_base=A minor_cov=3/2 new_cov=28/34 polymorphism_frequency=9.254e-01 polymorphism_score=0.5 prediction=consensus ref_cov=3/2 total_cov=31/37 RA 1047 . NC_000913 3028 0 G T bias_e_value=2470470 bias_p_value=0.53224 consensus_score=179.4 fisher_strand_p_value=0.208861 frequency=1 ks_quality_p_value=0.988679 major_base=T major_cov=30/32 major_frequency=9.118e-01 minor_base=G minor_cov=1/5 new_cov=30/32 polymorphism_frequency=9.118e-01 polymorphism_score=1.3 prediction=consensus ref_cov=1/5 total_cov=31/37 RA 1048 . NC_000913 3031 0 T C bias_e_value=4270070 bias_p_value=0.919946 consensus_score=191.3 fisher_strand_p_value=0.627625 frequency=1 ks_quality_p_value=0.999882 major_base=C major_cov=28/35 major_frequency=9.403e-01 minor_base=T minor_cov=1/3 new_cov=28/35 polymorphism_frequency=9.403e-01 polymorphism_score=0.5 prediction=consensus ref_cov=1/3 total_cov=31/38 RA 1049 . NC_000913 3055 0 C T bias_e_value=3652510 bias_p_value=0.786898 consensus_score=197.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.422949 major_base=T major_cov=32/36 major_frequency=9.714e-01 minor_base=C minor_cov=1/1 new_cov=32/36 polymorphism_frequency=9.714e-01 polymorphism_score=-2.1 prediction=consensus ref_cov=1/1 total_cov=33/37 RA 1050 . NC_000913 3073 0 G A bias_e_value=1956510 bias_p_value=0.421511 consensus_score=191.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.1432 major_base=A major_cov=29/36 major_frequency=9.701e-01 minor_base=G minor_cov=1/1 new_cov=29/36 polymorphism_frequency=9.701e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=1/1 total_cov=31/37 RA 1051 . NC_000913 3097 0 T C bias_e_value=3505850 bias_p_value=0.755302 consensus_score=222.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.387961 major_base=C major_cov=37/36 major_frequency=9.733e-01 minor_base=T minor_cov=1/1 new_cov=37/36 polymorphism_frequency=9.733e-01 polymorphism_score=-2.8 prediction=consensus ref_cov=1/1 total_cov=38/37 RA 1052 . NC_000913 3142 0 C T bias_e_value=3840060 bias_p_value=0.827305 consensus_score=218.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.473252 major_base=T major_cov=38/35 major_frequency=9.733e-01 minor_base=C minor_cov=1/1 new_cov=38/35 polymorphism_frequency=9.733e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=1/1 total_cov=40/37 RA 1053 . NC_000913 3196 0 C A bias_e_value=4634380 bias_p_value=0.998434 consensus_score=203.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.944555 major_base=A major_cov=37/29 major_frequency=9.706e-01 minor_base=C minor_cov=1/1 new_cov=37/29 polymorphism_frequency=9.706e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/1 total_cov=38/30 RA 1054 . NC_000913 3199 0 T A bias_e_value=3998630 bias_p_value=0.861466 consensus_score=193.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.522185 major_base=A major_cov=37/29 major_frequency=9.706e-01 minor_base=T minor_cov=1/1 new_cov=37/29 polymorphism_frequency=9.706e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=1/1 total_cov=38/30 RA 1055 . NC_000913 3244 0 C T consensus_score=219.8 frequency=1 major_base=T major_cov=43/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/27 RA 1056 . NC_000913 3424 0 A T consensus_score=178.7 frequency=1 major_base=T major_cov=28/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/29 RA 1057 . NC_000913 3520 0 A T consensus_score=163.7 frequency=1 major_base=T major_cov=19/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/35 RA 1058 . NC_000913 3547 0 C T consensus_score=134.9 frequency=1 major_base=T major_cov=12/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/36 RA 1059 . NC_000913 3622 0 A T bias_e_value=2315870 bias_p_value=0.498932 consensus_score=116.4 fisher_strand_p_value=0.186047 frequency=1 ks_quality_p_value=1 major_base=T major_cov=7/35 major_frequency=9.767e-01 minor_base=A minor_cov=1/0 new_cov=7/35 polymorphism_frequency=9.767e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=8/35 RA 1060 . NC_000913 3763 0 C T bias_e_value=640707 bias_p_value=0.138034 consensus_score=90.4 fisher_strand_p_value=0.0308123 frequency=1 ks_quality_p_value=1 major_base=T major_cov=9/24 major_frequency=9.167e-01 minor_base=A minor_cov=3/0 new_cov=9/24 polymorphism_frequency=9.167e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=0/0 total_cov=12/26 RA 1061 . NC_000913 3937 0 A G bias_e_value=4637410 bias_p_value=0.999087 consensus_score=255.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.957566 major_base=G major_cov=40/41 major_frequency=9.878e-01 minor_base=A minor_cov=0/1 new_cov=40/41 polymorphism_frequency=9.878e-01 polymorphism_score=-5.3 prediction=consensus ref_cov=0/1 total_cov=41/42 RA 1062 . NC_000913 4102 0 T C bias_e_value=2632510 bias_p_value=0.567149 consensus_score=173.1 fisher_strand_p_value=0.581731 frequency=1 ks_quality_p_value=0.394348 major_base=C major_cov=27/35 major_frequency=9.538e-01 minor_base=T minor_cov=2/1 new_cov=27/35 polymorphism_frequency=9.538e-01 polymorphism_score=0.1 prediction=consensus ref_cov=2/1 total_cov=31/36 RA 1063 . NC_000913 4336 0 A G bias_e_value=4619240 bias_p_value=0.995171 consensus_score=206.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.903348 major_base=G major_cov=32/37 major_frequency=9.452e-01 minor_base=A minor_cov=2/2 new_cov=32/37 polymorphism_frequency=9.452e-01 polymorphism_score=0.6 prediction=consensus ref_cov=2/2 total_cov=35/39 RA 1064 . NC_000913 4351 0 A G bias_e_value=4203030 bias_p_value=0.905503 consensus_score=222.8 fisher_strand_p_value=0.650353 frequency=1 ks_quality_p_value=0.919599 major_base=G major_cov=32/42 major_frequency=9.367e-01 minor_base=A minor_cov=3/2 new_cov=32/42 polymorphism_frequency=9.367e-01 polymorphism_score=2.3 prediction=consensus ref_cov=3/2 total_cov=35/44 RA 1065 . NC_000913 4363 0 G A bias_e_value=4317170 bias_p_value=0.930094 consensus_score=209.4 fisher_strand_p_value=0.651403 frequency=1 ks_quality_p_value=0.998148 major_base=A major_cov=31/40 major_frequency=9.342e-01 minor_base=G minor_cov=3/2 new_cov=31/40 polymorphism_frequency=9.342e-01 polymorphism_score=-0.1 prediction=consensus ref_cov=3/2 total_cov=36/42 RA 1066 . NC_000913 4420 0 T A bias_e_value=4625490 bias_p_value=0.996519 consensus_score=215.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.917731 major_base=A major_cov=31/37 major_frequency=9.189e-01 minor_base=T minor_cov=3/3 new_cov=31/37 polymorphism_frequency=9.189e-01 polymorphism_score=3.7 prediction=consensus ref_cov=3/3 total_cov=34/40 RA 1067 . NC_000913 4441 0 G A bias_e_value=3480710 bias_p_value=0.749885 consensus_score=195.9 fisher_strand_p_value=0.382284 frequency=1 ks_quality_p_value=1 major_base=A major_cov=30/37 major_frequency=9.306e-01 minor_base=G minor_cov=1/4 new_cov=30/37 polymorphism_frequency=9.306e-01 polymorphism_score=1.9 prediction=consensus ref_cov=1/4 total_cov=31/41 RA 1068 . NC_000913 4442 0 A G bias_e_value=4588450 bias_p_value=0.988538 consensus_score=211.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.852464 major_base=G major_cov=30/38 major_frequency=9.577e-01 minor_base=A minor_cov=1/2 new_cov=30/38 polymorphism_frequency=9.577e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=1/2 total_cov=31/41 RA 1069 . NC_000913 4780 0 T C bias_e_value=2677550 bias_p_value=0.576853 consensus_score=180.9 fisher_strand_p_value=0.26875 frequency=1 ks_quality_p_value=0.878364 major_base=C major_cov=26/36 major_frequency=9.538e-01 minor_base=T minor_cov=0/3 new_cov=26/36 polymorphism_frequency=9.538e-01 polymorphism_score=-1.5 prediction=consensus ref_cov=0/3 total_cov=26/39 RA 1070 . NC_000913 4804 0 T G bias_e_value=2688750 bias_p_value=0.579265 consensus_score=185.5 fisher_strand_p_value=0.270353 frequency=1 ks_quality_p_value=0.879351 major_base=G major_cov=25/35 major_frequency=9.524e-01 minor_base=T minor_cov=0/3 new_cov=25/35 polymorphism_frequency=9.524e-01 polymorphism_score=-1.1 prediction=consensus ref_cov=0/3 total_cov=25/38 RA 1071 . NC_000913 4822 0 T C bias_e_value=2663580 bias_p_value=0.573844 consensus_score=185.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.233982 major_base=C major_cov=24/33 major_frequency=9.828e-01 minor_base=T minor_cov=0/1 new_cov=24/33 polymorphism_frequency=9.828e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=24/35 RA 1072 . NC_000913 5067 0 C . bias_e_value=4640670 bias_p_value=0.999789 consensus_score=121.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.979523 major_base=. major_cov=16/13 major_frequency=9.667e-01 minor_base=C minor_cov=1/0 new_cov=16/13 polymorphism_frequency=9.667e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/0 total_cov=17/13 RA 1073 . NC_000913 5099 0 T C consensus_score=129.5 frequency=1 major_base=C major_cov=21/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/20 RA 1074 . NC_000913 5171 0 C T bias_e_value=4512990 bias_p_value=0.972282 consensus_score=146.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.773983 major_base=T major_cov=25/22 major_frequency=9.792e-01 minor_base=C minor_cov=1/0 new_cov=25/22 polymorphism_frequency=9.792e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=27/22 RA 1075 . NC_000913 5183 0 A C bias_e_value=4632590 bias_p_value=0.998048 consensus_score=151.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.938165 major_base=C major_cov=26/21 major_frequency=9.400e-01 minor_base=A minor_cov=2/1 new_cov=26/21 polymorphism_frequency=9.400e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=2/1 total_cov=28/22 RA 1076 . NC_000913 5234 0 G A bias_e_value=4641150 bias_p_value=0.999892 consensus_score=145.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.985308 major_base=A major_cov=25/21 major_frequency=9.787e-01 minor_base=G minor_cov=1/0 new_cov=25/21 polymorphism_frequency=9.787e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=1/0 total_cov=26/22 RA 1077 . NC_000913 5442 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=71.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=8/18 major_frequency=9.630e-01 minor_base=A minor_cov=0/1 new_cov=8/18 polymorphism_frequency=9.630e-01 polymorphism_score=-6.3 prediction=consensus ref_cov=0/0 total_cov=8/19 RA 1078 . NC_000913 5603 0 T G bias_e_value=3687620 bias_p_value=0.794462 consensus_score=107.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.431848 major_base=G major_cov=18/17 major_frequency=9.722e-01 minor_base=T minor_cov=0/1 new_cov=18/17 polymorphism_frequency=9.722e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=0/1 total_cov=18/18 RA 1079 . NC_000913 5642 0 A C bias_e_value=1846440 bias_p_value=0.397798 consensus_score=125.6 fisher_strand_p_value=0.45 frequency=1 ks_quality_p_value=0.291694 major_base=C major_cov=22/17 major_frequency=9.750e-01 minor_base=A minor_cov=0/1 new_cov=22/17 polymorphism_frequency=9.750e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=22/18 RA 1080 . NC_000913 5732 0 T G bias_e_value=3474750 bias_p_value=0.748602 consensus_score=140.4 fisher_strand_p_value=0.380952 frequency=1 ks_quality_p_value=1 major_base=G major_cov=26/15 major_frequency=9.762e-01 minor_base=T minor_cov=0/1 new_cov=26/15 polymorphism_frequency=9.762e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=26/16 RA 1081 . NC_000913 5806 0 G A bias_e_value=3580720 bias_p_value=0.771433 consensus_score=112.7 fisher_strand_p_value=0.405405 frequency=1 ks_quality_p_value=1 major_base=A major_cov=22/14 major_frequency=9.730e-01 minor_base=G minor_cov=0/1 new_cov=22/14 polymorphism_frequency=9.730e-01 polymorphism_score=-6.2 prediction=consensus ref_cov=0/1 total_cov=22/15 RA 1082 . NC_000913 5851 0 G T bias_e_value=3605850 bias_p_value=0.776846 consensus_score=146.5 fisher_strand_p_value=0.413043 frequency=1 ks_quality_p_value=0.996143 major_base=T major_cov=27/18 major_frequency=9.783e-01 minor_base=G minor_cov=0/1 new_cov=27/18 polymorphism_frequency=9.783e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=27/19 RA 1083 . NC_000913 6106 0 G C bias_e_value=4351920 bias_p_value=0.937581 consensus_score=185.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.668161 major_base=C major_cov=37/25 major_frequency=9.688e-01 minor_base=G minor_cov=1/1 new_cov=37/25 polymorphism_frequency=9.688e-01 polymorphism_score=-0.4 prediction=consensus ref_cov=1/1 total_cov=38/26 RA 1084 . NC_000913 6239 0 G T bias_e_value=1152580 bias_p_value=0.248313 consensus_score=110.6 fisher_strand_p_value=0.067077 frequency=1 ks_quality_p_value=1 major_base=T major_cov=29/15 major_frequency=8.980e-01 minor_base=G minor_cov=1/4 new_cov=29/15 polymorphism_frequency=8.980e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=1/4 total_cov=30/22 RA 1085 . NC_000913 6349 0 C T bias_e_value=4335370 bias_p_value=0.934014 consensus_score=176.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.659455 major_base=T major_cov=30/31 major_frequency=9.683e-01 minor_base=C minor_cov=1/1 new_cov=30/31 polymorphism_frequency=9.683e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=1/1 total_cov=31/32 RA 1086 . NC_000913 6502 0 T A bias_e_value=3725200 bias_p_value=0.80256 consensus_score=161.1 fisher_strand_p_value=0.470588 frequency=1 ks_quality_p_value=0.938447 major_base=A major_cov=23/27 major_frequency=9.804e-01 minor_base=. minor_cov=1/0 new_cov=23/27 polymorphism_frequency=9.804e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=0/0 total_cov=24/27 RA 1087 . NC_000913 6574 0 A G bias_e_value=4512990 bias_p_value=0.972282 consensus_score=132.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.773983 major_base=G major_cov=24/23 major_frequency=9.792e-01 minor_base=A minor_cov=1/0 new_cov=24/23 polymorphism_frequency=9.792e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/0 total_cov=25/23 RA 1088 . NC_000913 6595 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=160.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=26/26 major_frequency=9.630e-01 minor_base=T minor_cov=1/1 new_cov=26/26 polymorphism_frequency=9.630e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/1 total_cov=27/28 RA 1089 . NC_000913 6748 0 G A bias_e_value=4641460 bias_p_value=0.999959 consensus_score=180.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.990968 major_base=A major_cov=29/33 major_frequency=9.688e-01 minor_base=C minor_cov=1/1 new_cov=29/33 polymorphism_frequency=9.688e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=32/34 RA 1090 . NC_000913 6850 0 A G bias_e_value=3470490 bias_p_value=0.747684 consensus_score=157.3 fisher_strand_p_value=0.384615 frequency=1 ks_quality_p_value=0.988006 major_base=G major_cov=32/19 major_frequency=9.808e-01 minor_base=A minor_cov=0/1 new_cov=32/19 polymorphism_frequency=9.808e-01 polymorphism_score=-6.4 prediction=consensus ref_cov=0/1 total_cov=32/21 RA 1091 . NC_000913 6898 0 A G consensus_score=158.4 frequency=1 major_base=G major_cov=33/19 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/19 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/19 RA 1092 . NC_000913 6933 0 G A bias_e_value=4636860 bias_p_value=0.998967 consensus_score=114.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.954895 major_base=A major_cov=31/8 major_frequency=9.750e-01 minor_base=G minor_cov=1/0 new_cov=31/8 polymorphism_frequency=9.750e-01 polymorphism_score=-6.4 prediction=consensus ref_cov=1/0 total_cov=32/9 RA 1093 . NC_000913 7132 0 A C consensus_score=101.0 frequency=1 major_base=C major_cov=23/8 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/8 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/8 RA 1094 . NC_000913 7297 0 T C bias_e_value=4641600 bias_p_value=0.999988 consensus_score=131.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.995134 major_base=C major_cov=21/19 major_frequency=9.756e-01 minor_base=A minor_cov=1/0 new_cov=21/19 polymorphism_frequency=9.756e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/19 RA 1095 . NC_000913 7342 0 G C consensus_score=135.2 frequency=1 major_base=C major_cov=23/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/21 RA 1096 . NC_000913 7384 0 T C consensus_score=128.6 frequency=1 major_base=C major_cov=20/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/21 RA 1097 . NC_000913 7395 0 T C consensus_score=149.7 frequency=1 major_base=C major_cov=22/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/23 RA 1098 . NC_000913 7414 0 G A bias_e_value=3735870 bias_p_value=0.804858 consensus_score=139.6 fisher_strand_p_value=0.444444 frequency=1 ks_quality_p_value=1 major_base=A major_cov=25/19 major_frequency=9.778e-01 minor_base=T minor_cov=0/1 new_cov=25/19 polymorphism_frequency=9.778e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/20 RA 1099 . NC_000913 7456 0 G T bias_e_value=4636620 bias_p_value=0.998917 consensus_score=137.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.953819 major_base=T major_cov=27/18 major_frequency=9.574e-01 minor_base=A minor_cov=1/1 new_cov=27/18 polymorphism_frequency=9.574e-01 polymorphism_score=-5.4 prediction=consensus ref_cov=1/0 total_cov=29/19 RA 1100 . NC_000913 7459 0 G C bias_e_value=4637400 bias_p_value=0.999083 consensus_score=134.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.95749 major_base=C major_cov=28/19 major_frequency=9.792e-01 minor_base=A minor_cov=1/0 new_cov=28/19 polymorphism_frequency=9.792e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/19 RA 1101 . NC_000913 7474 0 T C bias_e_value=3601820 bias_p_value=0.775978 consensus_score=149.1 fisher_strand_p_value=0.411765 frequency=1 ks_quality_p_value=0.996868 major_base=C major_cov=30/20 major_frequency=9.804e-01 minor_base=T minor_cov=0/1 new_cov=30/20 polymorphism_frequency=9.804e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=30/21 RA 1102 . NC_000913 7479 0 C T bias_e_value=2038110 bias_p_value=0.439092 consensus_score=165.6 fisher_strand_p_value=0.152395 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/19 major_frequency=9.623e-01 minor_base=G minor_cov=0/2 new_cov=32/19 polymorphism_frequency=9.623e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/21 RA 1103 . NC_000913 7498 0 A G consensus_score=159.6 frequency=1 major_base=G major_cov=31/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/20 RA 1104 . NC_000913 7598 0 A G consensus_score=148.5 frequency=1 major_base=G major_cov=29/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/21 RA 1105 . NC_000913 7600 0 G A consensus_score=139.0 frequency=1 major_base=A major_cov=29/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/21 RA 1106 . NC_000913 7618 0 T C bias_e_value=4553370 bias_p_value=0.98098 consensus_score=143.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.811412 major_base=C major_cov=28/21 major_frequency=9.800e-01 minor_base=T minor_cov=1/0 new_cov=28/21 polymorphism_frequency=9.800e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=30/21 RA 1107 . NC_000913 7624 0 C G bias_e_value=3545070 bias_p_value=0.763752 consensus_score=144.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.396995 major_base=G major_cov=29/22 major_frequency=9.808e-01 minor_base=C minor_cov=1/0 new_cov=29/22 polymorphism_frequency=9.808e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=1/0 total_cov=30/22 RA 1108 . NC_000913 7627 0 A G bias_e_value=4581930 bias_p_value=0.987133 consensus_score=138.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.843932 major_base=G major_cov=29/22 major_frequency=9.808e-01 minor_base=A minor_cov=1/0 new_cov=29/22 polymorphism_frequency=9.808e-01 polymorphism_score=-6.5 prediction=consensus ref_cov=1/0 total_cov=30/22 RA 1109 . NC_000913 7681 0 A G bias_e_value=3921700 bias_p_value=0.844893 consensus_score=135.7 fisher_strand_p_value=0.497585 frequency=1 ks_quality_p_value=1 major_base=G major_cov=20/24 major_frequency=9.565e-01 minor_base=T minor_cov=0/2 new_cov=20/24 polymorphism_frequency=9.565e-01 polymorphism_score=-5.9 prediction=consensus ref_cov=1/0 total_cov=21/26 RA 1110 . NC_000913 7711 0 A T bias_e_value=4641600 bias_p_value=0.999989 consensus_score=122.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.995365 major_base=T major_cov=18/23 major_frequency=9.762e-01 minor_base=G minor_cov=0/1 new_cov=18/23 polymorphism_frequency=9.762e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=19/24 RA 1111 . NC_000913 7939 0 G A bias_e_value=1325730 bias_p_value=0.285616 consensus_score=141.1 fisher_strand_p_value=0.397881 frequency=1 ks_quality_p_value=0.204618 major_base=A major_cov=23/30 major_frequency=8.983e-01 minor_base=G minor_cov=4/2 new_cov=23/30 polymorphism_frequency=8.983e-01 polymorphism_score=7.0 prediction=consensus ref_cov=4/2 total_cov=27/32 RA 1112 . NC_000913 8963 0 G T bias_e_value=4452590 bias_p_value=0.959269 consensus_score=178.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.728512 major_base=T major_cov=22/36 major_frequency=9.508e-01 minor_base=G minor_cov=1/2 new_cov=22/36 polymorphism_frequency=9.508e-01 polymorphism_score=-0.4 prediction=consensus ref_cov=1/2 total_cov=23/38 RA 1113 . NC_000913 8975 0 G T bias_e_value=3744410 bias_p_value=0.806697 consensus_score=184.9 fisher_strand_p_value=0.552367 frequency=1 ks_quality_p_value=0.808738 major_base=T major_cov=21/36 major_frequency=9.500e-01 minor_base=G minor_cov=2/1 new_cov=21/36 polymorphism_frequency=9.500e-01 polymorphism_score=-0.4 prediction=consensus ref_cov=2/1 total_cov=23/37 RA 1114 . NC_000913 8976 0 G A bias_e_value=3530310 bias_p_value=0.760571 consensus_score=173.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.393568 major_base=A major_cov=21/36 major_frequency=9.661e-01 minor_base=G minor_cov=1/1 new_cov=21/36 polymorphism_frequency=9.661e-01 polymorphism_score=-2.1 prediction=consensus ref_cov=1/1 total_cov=23/37 RA 1115 . NC_000913 8996 0 G T bias_e_value=3230420 bias_p_value=0.695964 consensus_score=179.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.330095 major_base=T major_cov=22/34 major_frequency=9.655e-01 minor_base=G minor_cov=1/1 new_cov=22/34 polymorphism_frequency=9.655e-01 polymorphism_score=-0.5 prediction=consensus ref_cov=1/1 total_cov=23/35 RA 1116 . NC_000913 9488 0 G A bias_e_value=2398710 bias_p_value=0.51678 consensus_score=221.4 fisher_strand_p_value=0.196842 frequency=1 ks_quality_p_value=1 major_base=A major_cov=42/32 major_frequency=9.737e-01 minor_base=G minor_cov=0/2 new_cov=42/32 polymorphism_frequency=9.737e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=42/35 RA 1117 . NC_000913 9623 0 C A consensus_score=267.0 frequency=1 major_base=A major_cov=37/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/46 RA 1118 . NC_000913 9665 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=259.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=34/47 major_frequency=9.643e-01 minor_base=G minor_cov=1/2 new_cov=34/47 polymorphism_frequency=9.643e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/2 total_cov=35/49 RA 1119 . NC_000913 9668 0 C T bias_e_value=2038460 bias_p_value=0.439167 consensus_score=248.0 fisher_strand_p_value=0.409639 frequency=1 ks_quality_p_value=0.37212 major_base=T major_cov=33/49 major_frequency=9.880e-01 minor_base=C minor_cov=1/0 new_cov=33/49 polymorphism_frequency=9.880e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/0 total_cov=35/49 RA 1120 . NC_000913 9754 0 A C bias_e_value=2809310 bias_p_value=0.60524 consensus_score=221.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.256308 major_base=C major_cov=26/45 major_frequency=9.726e-01 minor_base=A minor_cov=1/1 new_cov=26/45 polymorphism_frequency=9.726e-01 polymorphism_score=-1.4 prediction=consensus ref_cov=1/1 total_cov=27/46 RA 1121 . NC_000913 9839 0 G A bias_e_value=4631620 bias_p_value=0.997838 consensus_score=163.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.934972 major_base=A major_cov=19/34 major_frequency=9.636e-01 minor_base=G minor_cov=1/1 new_cov=19/34 polymorphism_frequency=9.636e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=1/1 total_cov=20/37 RA 1122 . NC_000913 9851 0 A T bias_e_value=4641080 bias_p_value=0.999877 consensus_score=178.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.984335 major_base=T major_cov=22/35 major_frequency=9.500e-01 minor_base=A minor_cov=1/2 new_cov=22/35 polymorphism_frequency=9.500e-01 polymorphism_score=-0.6 prediction=consensus ref_cov=1/2 total_cov=23/38 RA 1123 . NC_000913 10006 0 G A bias_e_value=4640950 bias_p_value=0.999848 consensus_score=161.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.982609 major_base=A major_cov=27/27 major_frequency=9.474e-01 minor_base=G minor_cov=1/2 new_cov=27/27 polymorphism_frequency=9.474e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=1/2 total_cov=29/29 RA 1124 . NC_000913 10015 0 G A bias_e_value=2457170 bias_p_value=0.529375 consensus_score=158.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.204686 major_base=A major_cov=25/28 major_frequency=9.636e-01 minor_base=G minor_cov=1/1 new_cov=25/28 polymorphism_frequency=9.636e-01 polymorphism_score=-2.1 prediction=consensus ref_cov=1/1 total_cov=27/29 RA 1125 . NC_000913 10024 0 C A bias_e_value=4640630 bias_p_value=0.999779 consensus_score=157.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.979058 major_base=A major_cov=26/28 major_frequency=9.643e-01 minor_base=C minor_cov=1/1 new_cov=26/28 polymorphism_frequency=9.643e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/1 total_cov=27/29 RA 1126 . NC_000913 10099 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=156.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=29/22 major_frequency=9.808e-01 minor_base=G minor_cov=1/0 new_cov=29/22 polymorphism_frequency=9.808e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=30/22 RA 1127 . NC_000913 10260 0 G A bias_e_value=4641530 bias_p_value=0.999974 consensus_score=134.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99278 major_base=A major_cov=22/24 major_frequency=9.583e-01 minor_base=G minor_cov=1/1 new_cov=22/24 polymorphism_frequency=9.583e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/1 total_cov=24/27 RA 1128 . NC_000913 10336 0 A G bias_e_value=2670400 bias_p_value=0.575313 consensus_score=153.7 fisher_strand_p_value=0.415094 frequency=1 ks_quality_p_value=0.566125 major_base=G major_cov=21/31 major_frequency=9.811e-01 minor_base=A minor_cov=1/0 new_cov=21/31 polymorphism_frequency=9.811e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/0 total_cov=22/31 RA 1129 . NC_000913 10548 0 T A bias_e_value=3505710 bias_p_value=0.755272 consensus_score=145.6 fisher_strand_p_value=0.569149 frequency=1 ks_quality_p_value=0.681596 major_base=A major_cov=27/19 major_frequency=9.388e-01 minor_base=T minor_cov=1/2 new_cov=27/19 polymorphism_frequency=9.388e-01 polymorphism_score=2.1 prediction=consensus ref_cov=1/2 total_cov=28/21 RA 1130 . NC_000913 10637 0 C A bias_e_value=580378 bias_p_value=0.125037 consensus_score=125.2 fisher_strand_p_value=0.263953 frequency=1 ks_quality_p_value=0.102832 major_base=A major_cov=30/14 major_frequency=9.362e-01 minor_base=C minor_cov=1/2 new_cov=30/14 polymorphism_frequency=9.362e-01 polymorphism_score=2.4 prediction=consensus ref_cov=1/2 total_cov=31/16 RA 1131 . NC_000913 10642 0 A G bias_e_value=1678740 bias_p_value=0.361669 consensus_score=127.8 fisher_strand_p_value=0.274045 frequency=1 ks_quality_p_value=0.416178 major_base=G major_cov=29/14 major_frequency=9.348e-01 minor_base=A minor_cov=1/2 new_cov=29/14 polymorphism_frequency=9.348e-01 polymorphism_score=0.2 prediction=consensus ref_cov=1/2 total_cov=30/16 RA 1132 . NC_000913 10703 0 C T bias_e_value=1550990 bias_p_value=0.334147 consensus_score=119.7 fisher_strand_p_value=0.169435 frequency=1 ks_quality_p_value=0.600199 major_base=T major_cov=25/16 major_frequency=9.535e-01 minor_base=C minor_cov=0/2 new_cov=25/16 polymorphism_frequency=9.535e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=0/2 total_cov=25/18 RA 1133 . NC_000913 10718 0 G A bias_e_value=857914 bias_p_value=0.18483 consensus_score=108.3 fisher_strand_p_value=0.1777 frequency=1 ks_quality_p_value=0.253744 major_base=A major_cov=24/16 major_frequency=9.524e-01 minor_base=G minor_cov=0/2 new_cov=24/16 polymorphism_frequency=9.524e-01 polymorphism_score=-1.9 prediction=consensus ref_cov=0/2 total_cov=25/18 RA 1134 . NC_000913 10747 0 G A bias_e_value=1614860 bias_p_value=0.347906 consensus_score=126.0 fisher_strand_p_value=0.141536 frequency=1 ks_quality_p_value=0.761595 major_base=A major_cov=29/16 major_frequency=9.574e-01 minor_base=G minor_cov=0/2 new_cov=29/16 polymorphism_frequency=9.574e-01 polymorphism_score=-2.0 prediction=consensus ref_cov=0/2 total_cov=30/18 RA 1135 . NC_000913 10751 0 C T bias_e_value=1701090 bias_p_value=0.366484 consensus_score=123.4 fisher_strand_p_value=0.116279 frequency=1 ks_quality_p_value=1 major_base=T major_cov=28/13 major_frequency=9.535e-01 minor_base=C minor_cov=0/2 new_cov=28/13 polymorphism_frequency=9.535e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=0/2 total_cov=28/16 RA 1136 . NC_000913 10754 0 A G bias_e_value=2065960 bias_p_value=0.445091 consensus_score=121.2 fisher_strand_p_value=0.348837 frequency=1 ks_quality_p_value=0.446057 major_base=G major_cov=28/14 major_frequency=9.767e-01 minor_base=A minor_cov=0/1 new_cov=28/14 polymorphism_frequency=9.767e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=28/16 RA 1137 . NC_000913 10757 0 T C bias_e_value=1804500 bias_p_value=0.388763 consensus_score=126.2 fisher_strand_p_value=0.12685 frequency=1 ks_quality_p_value=1 major_base=C major_cov=28/14 major_frequency=9.545e-01 minor_base=T minor_cov=0/2 new_cov=28/14 polymorphism_frequency=9.545e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=0/2 total_cov=28/16 RA 1138 . NC_000913 10772 0 C A bias_e_value=4625300 bias_p_value=0.996478 consensus_score=104.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.917255 major_base=A major_cov=25/13 major_frequency=9.744e-01 minor_base=C minor_cov=1/0 new_cov=25/13 polymorphism_frequency=9.744e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=26/14 RA 1139 . NC_000913 10802 0 T C consensus_score=121.4 frequency=1 major_base=C major_cov=26/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/17 RA 1140 . NC_000913 10840 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=142.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=24/24 major_frequency=9.796e-01 minor_base=C minor_cov=1/0 new_cov=24/24 polymorphism_frequency=9.796e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/24 RA 1141 . NC_000913 10865 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=154.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=28/24 major_frequency=9.811e-01 minor_base=C minor_cov=1/0 new_cov=28/24 polymorphism_frequency=9.811e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/24 RA 1142 . NC_000913 10973 0 T A consensus_score=199.5 frequency=1 major_base=A major_cov=27/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/37 RA 1143 . NC_000913 10985 0 A G consensus_score=204.0 frequency=1 major_base=G major_cov=28/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/37 RA 1144 . NC_000913 11021 0 T C bias_e_value=2545870 bias_p_value=0.548484 consensus_score=216.3 fisher_strand_p_value=0.217735 frequency=1 ks_quality_p_value=0.996441 major_base=C major_cov=30/36 major_frequency=9.706e-01 minor_base=A minor_cov=2/0 new_cov=30/36 polymorphism_frequency=9.706e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=32/37 RA 1145 . NC_000913 11063 0 C T bias_e_value=3739560 bias_p_value=0.805652 consensus_score=199.7 fisher_strand_p_value=0.484375 frequency=1 ks_quality_p_value=0.919588 major_base=T major_cov=30/33 major_frequency=9.844e-01 minor_base=C minor_cov=1/0 new_cov=30/33 polymorphism_frequency=9.844e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=31/34 RA 1146 . NC_000913 11156 0 G A bias_e_value=3097690 bias_p_value=0.667368 consensus_score=183.0 fisher_strand_p_value=0.553571 frequency=1 ks_quality_p_value=0.551268 major_base=A major_cov=23/39 major_frequency=9.538e-01 minor_base=G minor_cov=2/1 new_cov=23/39 polymorphism_frequency=9.538e-01 polymorphism_score=-0.3 prediction=consensus ref_cov=2/1 total_cov=25/40 RA 1147 . NC_000913 11225 0 C T bias_e_value=2234520 bias_p_value=0.481407 consensus_score=133.8 fisher_strand_p_value=0.633577 frequency=1 ks_quality_p_value=0.277468 major_base=T major_cov=18/30 major_frequency=9.231e-01 minor_base=C minor_cov=2/2 new_cov=18/30 polymorphism_frequency=9.231e-01 polymorphism_score=3.3 prediction=consensus ref_cov=2/2 total_cov=21/32 RA 1148 . NC_000913 11366 0 C T bias_e_value=2976780 bias_p_value=0.641318 consensus_score=124.9 fisher_strand_p_value=0.620851 frequency=1 ks_quality_p_value=0.457212 major_base=T major_cov=21/25 major_frequency=9.200e-01 minor_base=C minor_cov=1/3 new_cov=21/25 polymorphism_frequency=9.200e-01 polymorphism_score=3.6 prediction=consensus ref_cov=1/3 total_cov=22/29 RA 1149 . NC_000913 11439 0 C G bias_e_value=2334360 bias_p_value=0.502915 consensus_score=123.6 fisher_strand_p_value=0.489429 frequency=1 ks_quality_p_value=0.384987 major_base=G major_cov=21/21 major_frequency=9.545e-01 minor_base=C minor_cov=0/2 new_cov=21/21 polymorphism_frequency=9.545e-01 polymorphism_score=-0.1 prediction=consensus ref_cov=0/2 total_cov=21/23 RA 1150 . NC_000913 11481 0 G A bias_e_value=4641160 bias_p_value=0.999894 consensus_score=113.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.985455 major_base=A major_cov=19/20 major_frequency=9.286e-01 minor_base=G minor_cov=2/1 new_cov=19/20 polymorphism_frequency=9.286e-01 polymorphism_score=-1.5 prediction=consensus ref_cov=2/1 total_cov=23/21 RA 1151 . NC_000913 11541 0 G A bias_e_value=3850400 bias_p_value=0.829532 consensus_score=140.2 fisher_strand_p_value=0.490248 frequency=1 ks_quality_p_value=0.971431 major_base=A major_cov=23/23 major_frequency=9.583e-01 minor_base=C minor_cov=2/0 new_cov=23/23 polymorphism_frequency=9.583e-01 polymorphism_score=-5.9 prediction=consensus ref_cov=1/0 total_cov=26/23 RA 1152 . NC_000913 11695 0 G A bias_e_value=4567420 bias_p_value=0.984006 consensus_score=152.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.826565 major_base=A major_cov=30/24 major_frequency=9.643e-01 minor_base=G minor_cov=1/1 new_cov=30/24 polymorphism_frequency=9.643e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=1/1 total_cov=31/26 RA 1153 . NC_000913 11814 0 G A bias_e_value=4540770 bias_p_value=0.978266 consensus_score=102.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.79889 major_base=A major_cov=19/18 major_frequency=9.487e-01 minor_base=G minor_cov=1/1 new_cov=19/18 polymorphism_frequency=9.487e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=1/1 total_cov=20/19 RA 1154 . NC_000913 11854 0 A G bias_e_value=4289990 bias_p_value=0.924237 consensus_score=93.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.636909 major_base=G major_cov=19/16 major_frequency=9.211e-01 minor_base=A minor_cov=2/1 new_cov=19/16 polymorphism_frequency=9.211e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=2/1 total_cov=21/18 RA 1155 . NC_000913 11861 0 C T bias_e_value=4620670 bias_p_value=0.995479 consensus_score=95.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.906426 major_base=T major_cov=18/17 major_frequency=9.211e-01 minor_base=C minor_cov=2/1 new_cov=18/17 polymorphism_frequency=9.211e-01 polymorphism_score=-2.1 prediction=consensus ref_cov=2/1 total_cov=21/18 RA 1156 . NC_000913 11925 0 A C bias_e_value=4641210 bias_p_value=0.999905 consensus_score=98.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.986243 major_base=C major_cov=18/15 major_frequency=9.429e-01 minor_base=A minor_cov=1/1 new_cov=18/15 polymorphism_frequency=9.429e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=1/1 total_cov=19/17 RA 1157 . NC_000913 12026 0 T G bias_e_value=3668080 bias_p_value=0.790253 consensus_score=108.6 fisher_strand_p_value=0.459459 frequency=1 ks_quality_p_value=0.929068 major_base=G major_cov=20/16 major_frequency=9.730e-01 minor_base=T minor_cov=0/1 new_cov=20/16 polymorphism_frequency=9.730e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=0/1 total_cov=20/17 RA 1158 . NC_000913 12237 0 C T bias_e_value=4510170 bias_p_value=0.971673 consensus_score=169.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.771623 major_base=T major_cov=36/18 major_frequency=9.643e-01 minor_base=C minor_cov=1/1 new_cov=36/18 polymorphism_frequency=9.643e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=1/1 total_cov=37/19 RA 1159 . NC_000913 12309 0 A G bias_e_value=4641510 bias_p_value=0.99997 consensus_score=171.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.992233 major_base=G major_cov=32/22 major_frequency=9.474e-01 minor_base=A minor_cov=2/1 new_cov=32/22 polymorphism_frequency=9.474e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=2/1 total_cov=35/23 RA 1160 . NC_000913 12357 0 T C bias_e_value=4641640 bias_p_value=0.999996 consensus_score=133.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997342 major_base=C major_cov=26/20 major_frequency=9.388e-01 minor_base=T minor_cov=2/1 new_cov=26/20 polymorphism_frequency=9.388e-01 polymorphism_score=-2.0 prediction=consensus ref_cov=2/1 total_cov=28/21 RA 1161 . NC_000913 12384 0 T C bias_e_value=3220680 bias_p_value=0.693864 consensus_score=138.0 fisher_strand_p_value=0.502857 frequency=1 ks_quality_p_value=0.652681 major_base=C major_cov=27/21 major_frequency=9.600e-01 minor_base=T minor_cov=2/0 new_cov=27/21 polymorphism_frequency=9.600e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=2/0 total_cov=29/21 RA 1162 . NC_000913 12507 0 T C bias_e_value=1747780 bias_p_value=0.376542 consensus_score=72.1 fisher_strand_p_value=0.347561 frequency=1 ks_quality_p_value=0.348132 major_base=C major_cov=19/10 major_frequency=8.529e-01 minor_base=T minor_cov=2/3 new_cov=19/10 polymorphism_frequency=8.529e-01 polymorphism_score=5.2 prediction=consensus ref_cov=2/3 total_cov=21/13 RA 1163 . NC_000913 12714 0 C T bias_e_value=4210420 bias_p_value=0.907096 consensus_score=121.9 fisher_strand_p_value=0.608511 frequency=1 ks_quality_p_value=0.98795 major_base=T major_cov=21/22 major_frequency=9.149e-01 minor_base=C minor_cov=3/1 new_cov=21/22 polymorphism_frequency=9.149e-01 polymorphism_score=-0.6 prediction=consensus ref_cov=3/1 total_cov=26/23 RA 1164 . NC_000913 12846 0 G T bias_e_value=1973220 bias_p_value=0.425112 consensus_score=157.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.145059 major_base=T major_cov=31/28 major_frequency=9.219e-01 minor_base=G minor_cov=3/2 new_cov=31/28 polymorphism_frequency=9.219e-01 polymorphism_score=6.7 prediction=consensus ref_cov=3/2 total_cov=36/31 RA 1165 . NC_000913 12879 0 T C bias_e_value=1882360 bias_p_value=0.405537 consensus_score=197.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.135101 major_base=C major_cov=38/28 major_frequency=9.429e-01 minor_base=T minor_cov=2/2 new_cov=38/28 polymorphism_frequency=9.429e-01 polymorphism_score=1.8 prediction=consensus ref_cov=2/2 total_cov=40/30 RA 1166 . NC_000913 13014 0 A G bias_e_value=2824330 bias_p_value=0.608475 consensus_score=218.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.258693 major_base=G major_cov=43/28 major_frequency=9.467e-01 minor_base=A minor_cov=2/2 new_cov=43/28 polymorphism_frequency=9.467e-01 polymorphism_score=1.5 prediction=consensus ref_cov=2/2 total_cov=45/30 RA 1167 . NC_000913 13029 0 C T bias_e_value=3690290 bias_p_value=0.795038 consensus_score=193.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.432534 major_base=T major_cov=39/27 major_frequency=9.429e-01 minor_base=C minor_cov=2/2 new_cov=39/27 polymorphism_frequency=9.429e-01 polymorphism_score=2.2 prediction=consensus ref_cov=2/2 total_cov=42/29 RA 1168 . NC_000913 13320 0 A G consensus_score=262.5 frequency=1 major_base=G major_cov=40/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/45 RA 1169 . NC_000913 13539 0 A G bias_e_value=3069680 bias_p_value=0.661333 consensus_score=244.8 fisher_strand_p_value=0.466667 frequency=1 ks_quality_p_value=0.643109 major_base=G major_cov=34/40 major_frequency=9.867e-01 minor_base=A minor_cov=1/0 new_cov=34/40 polymorphism_frequency=9.867e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/0 total_cov=35/41 RA 1170 . NC_000913 13866 0 G A bias_e_value=4163810 bias_p_value=0.897054 consensus_score=185.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.582049 major_base=A major_cov=27/37 major_frequency=9.552e-01 minor_base=G minor_cov=1/2 new_cov=27/37 polymorphism_frequency=9.552e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=1/2 total_cov=28/40 RA 1171 . NC_000913 13932 0 A G bias_e_value=470371 bias_p_value=0.101337 consensus_score=186.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.0207956 major_base=G major_cov=22/39 major_frequency=9.683e-01 minor_base=A minor_cov=1/1 new_cov=22/39 polymorphism_frequency=9.683e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=1/1 total_cov=23/41 RA 1172 . NC_000913 14223 0 G A bias_e_value=3175490 bias_p_value=0.68413 consensus_score=105.3 fisher_strand_p_value=0.368421 frequency=1 ks_quality_p_value=0.867407 major_base=A major_cov=24/13 major_frequency=9.737e-01 minor_base=G minor_cov=0/1 new_cov=24/13 polymorphism_frequency=9.737e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=24/14 RA 1173 . NC_000913 14232 0 G A bias_e_value=4641560 bias_p_value=0.99998 consensus_score=107.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.993671 major_base=A major_cov=22/13 major_frequency=9.722e-01 minor_base=C minor_cov=1/0 new_cov=22/13 polymorphism_frequency=9.722e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/13 RA 1174 . NC_000913 14401 0 C T bias_e_value=3097140 bias_p_value=0.66725 consensus_score=214.3 fisher_strand_p_value=0.312919 frequency=1 ks_quality_p_value=0.974908 major_base=T major_cov=40/29 major_frequency=9.452e-01 minor_base=G minor_cov=1/3 new_cov=40/29 polymorphism_frequency=9.452e-01 polymorphism_score=-6.6 prediction=consensus ref_cov=0/0 total_cov=41/32 RA 1175 . NC_000913 14647 0 T C bias_e_value=3761380 bias_p_value=0.810355 consensus_score=210.0 fisher_strand_p_value=0.463768 frequency=1 ks_quality_p_value=0.973088 major_base=C major_cov=31/37 major_frequency=9.855e-01 minor_base=T minor_cov=1/0 new_cov=31/37 polymorphism_frequency=9.855e-01 polymorphism_score=-6.0 prediction=consensus ref_cov=1/0 total_cov=32/37 RA 1176 . NC_000913 14686 0 C T bias_e_value=3371140 bias_p_value=0.726281 consensus_score=211.5 fisher_strand_p_value=0.408451 frequency=1 ks_quality_p_value=0.87776 major_base=T major_cov=28/42 major_frequency=9.859e-01 minor_base=C minor_cov=1/0 new_cov=28/42 polymorphism_frequency=9.859e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=1/0 total_cov=29/42 RA 1177 . NC_000913 14698 0 C T bias_e_value=3161650 bias_p_value=0.681147 consensus_score=218.4 fisher_strand_p_value=0.426471 frequency=1 ks_quality_p_value=0.743229 major_base=T major_cov=28/39 major_frequency=9.853e-01 minor_base=C minor_cov=1/0 new_cov=28/39 polymorphism_frequency=9.853e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=29/39 RA 1178 . NC_000913 14701 0 T C bias_e_value=3581300 bias_p_value=0.771558 consensus_score=215.0 fisher_strand_p_value=0.432836 frequency=1 ks_quality_p_value=0.936947 major_base=C major_cov=28/38 major_frequency=9.851e-01 minor_base=T minor_cov=1/0 new_cov=28/38 polymorphism_frequency=9.851e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=29/39 RA 1179 . NC_000913 14704 0 A G bias_e_value=3684610 bias_p_value=0.793815 consensus_score=215.2 fisher_strand_p_value=0.432836 frequency=1 ks_quality_p_value=0.995938 major_base=G major_cov=28/38 major_frequency=9.851e-01 minor_base=A minor_cov=1/0 new_cov=28/38 polymorphism_frequency=9.851e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=29/39 RA 1180 . NC_000913 14956 0 G C bias_e_value=4638250 bias_p_value=0.999267 consensus_score=322.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.961947 major_base=C major_cov=49/49 major_frequency=9.703e-01 minor_base=G minor_cov=2/1 new_cov=49/49 polymorphism_frequency=9.703e-01 polymorphism_score=0.2 prediction=consensus ref_cov=2/1 total_cov=52/51 RA 1181 . NC_000913 15073 0 A T bias_e_value=653804 bias_p_value=0.140856 consensus_score=221.9 fisher_strand_p_value=0.346001 frequency=1 ks_quality_p_value=0.0914048 major_base=T major_cov=39/34 major_frequency=9.481e-01 minor_base=A minor_cov=1/3 new_cov=39/34 polymorphism_frequency=9.481e-01 polymorphism_score=4.1 prediction=consensus ref_cov=1/3 total_cov=40/38 RA 1182 . NC_000913 15172 0 A G bias_e_value=1942950 bias_p_value=0.41859 consensus_score=195.8 fisher_strand_p_value=0.616654 frequency=1 ks_quality_p_value=0.22979 major_base=G major_cov=33/35 major_frequency=9.444e-01 minor_base=A minor_cov=1/3 new_cov=33/35 polymorphism_frequency=9.444e-01 polymorphism_score=1.8 prediction=consensus ref_cov=1/3 total_cov=34/39 RA 1183 . NC_000913 15174 0 G A bias_e_value=3517270 bias_p_value=0.757762 consensus_score=201.1 fisher_strand_p_value=0.618073 frequency=1 ks_quality_p_value=0.631913 major_base=A major_cov=33/36 major_frequency=9.452e-01 minor_base=G minor_cov=1/3 new_cov=33/36 polymorphism_frequency=9.452e-01 polymorphism_score=2.0 prediction=consensus ref_cov=1/3 total_cov=34/39 RA 1184 . NC_000913 15226 0 C T bias_e_value=4633350 bias_p_value=0.998211 consensus_score=166.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.940775 major_base=T major_cov=23/35 major_frequency=9.508e-01 minor_base=C minor_cov=1/2 new_cov=23/35 polymorphism_frequency=9.508e-01 polymorphism_score=-2.0 prediction=consensus ref_cov=1/2 total_cov=27/38 RA 1185 . NC_000913 15328 0 C T bias_e_value=2332740 bias_p_value=0.502567 consensus_score=128.9 fisher_strand_p_value=0.489855 frequency=1 ks_quality_p_value=0.384227 major_base=T major_cov=12/32 major_frequency=9.565e-01 minor_base=C minor_cov=1/1 new_cov=12/32 polymorphism_frequency=9.565e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=1/1 total_cov=13/33 RA 1186 . NC_000913 15338 0 A T bias_e_value=3858260 bias_p_value=0.831226 consensus_score=132.6 fisher_strand_p_value=0.49899 frequency=1 ks_quality_p_value=0.959004 major_base=T major_cov=12/31 major_frequency=9.556e-01 minor_base=A minor_cov=1/1 new_cov=12/31 polymorphism_frequency=9.556e-01 polymorphism_score=-3.2 prediction=consensus ref_cov=1/1 total_cov=13/33 RA 1187 . NC_000913 15369 0 T A bias_e_value=3332210 bias_p_value=0.717892 consensus_score=148.1 fisher_strand_p_value=0.388235 frequency=1 ks_quality_p_value=0.902631 major_base=A major_cov=10/39 major_frequency=9.608e-01 minor_base=T minor_cov=1/1 new_cov=10/39 polymorphism_frequency=9.608e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=1/1 total_cov=12/40 RA 1188 . NC_000913 16749 0 T A bias_e_value=4639890 bias_p_value=0.99962 consensus_score=80.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.972574 major_base=A major_cov=24/5 major_frequency=9.355e-01 minor_base=T minor_cov=2/0 new_cov=24/5 polymorphism_frequency=9.355e-01 polymorphism_score=-2.8 prediction=consensus ref_cov=2/0 total_cov=26/5 RA 1189 . NC_000913 16966 0 A G bias_e_value=3816980 bias_p_value=0.822332 consensus_score=41.9 fisher_strand_p_value=0.466667 frequency=1 ks_quality_p_value=1 major_base=G major_cov=8/6 major_frequency=9.333e-01 minor_base=T minor_cov=0/1 new_cov=8/6 polymorphism_frequency=9.333e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=8/7 RA 1190 . NC_000913 16981 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=33.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=8/6 major_frequency=9.333e-01 minor_base=G minor_cov=1/0 new_cov=8/6 polymorphism_frequency=9.333e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=1/0 total_cov=9/7 RA 1191 . NC_000913 17039 0 C T consensus_score=23.0 frequency=1 major_base=T major_cov=10/1 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=10/1 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=10/1 RA 1192 . NC_000913 17085 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=33.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=9/3 major_frequency=9.231e-01 minor_base=T minor_cov=1/0 new_cov=9/3 polymorphism_frequency=9.231e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=1/0 total_cov=10/3 RA 1193 . NC_000913 17175 0 C T bias_e_value=4641490 bias_p_value=0.999965 consensus_score=42.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.991701 major_base=T major_cov=8/7 major_frequency=9.375e-01 minor_base=C minor_cov=1/0 new_cov=8/7 polymorphism_frequency=9.375e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/0 total_cov=9/7 RA 1194 . NC_000913 17219 0 G T bias_e_value=4641620 bias_p_value=0.999992 consensus_score=70.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996055 major_base=T major_cov=13/9 major_frequency=9.565e-01 minor_base=G minor_cov=1/0 new_cov=13/9 polymorphism_frequency=9.565e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=1/0 total_cov=14/9 RA 1195 . NC_000913 17228 0 G A bias_e_value=4361830 bias_p_value=0.939715 consensus_score=59.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.673507 major_base=A major_cov=13/9 major_frequency=9.565e-01 minor_base=G minor_cov=1/0 new_cov=13/9 polymorphism_frequency=9.565e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/0 total_cov=14/9 RA 1196 . NC_000913 17229 0 C T bias_e_value=4638780 bias_p_value=0.999382 consensus_score=65.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.965052 major_base=T major_cov=13/9 major_frequency=9.565e-01 minor_base=C minor_cov=1/0 new_cov=13/9 polymorphism_frequency=9.565e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=1/0 total_cov=14/9 RA 1197 . NC_000913 17231 0 T A bias_e_value=4641610 bias_p_value=0.999991 consensus_score=66.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99568 major_base=A major_cov=12/9 major_frequency=9.545e-01 minor_base=C minor_cov=1/0 new_cov=12/9 polymorphism_frequency=9.545e-01 polymorphism_score=-6.4 prediction=consensus ref_cov=1/0 total_cov=14/9 RA 1198 . NC_000913 17245 0 C G bias_e_value=4641650 bias_p_value=1 consensus_score=78.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=14/11 major_frequency=9.615e-01 minor_base=C minor_cov=1/0 new_cov=14/11 polymorphism_frequency=9.615e-01 polymorphism_score=-6.1 prediction=consensus ref_cov=1/0 total_cov=15/11 RA 1199 . NC_000913 17281 0 G A bias_e_value=4641640 bias_p_value=0.999998 consensus_score=98.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998219 major_base=A major_cov=17/16 major_frequency=9.706e-01 minor_base=G minor_cov=1/0 new_cov=17/16 polymorphism_frequency=9.706e-01 polymorphism_score=-6.8 prediction=consensus ref_cov=1/0 total_cov=18/16 RA 1200 . NC_000913 17309 0 A G consensus_score=97.6 frequency=1 major_base=G major_cov=18/13 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/13 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/13 RA 1201 . NC_000913 17348 1 . A bias_e_value=3960390 bias_p_value=0.853229 consensus_score=85.6 fisher_strand_p_value=0.51954 frequency=1 ks_quality_p_value=0.981133 major_base=A major_cov=17/11 major_frequency=9.333e-01 minor_base=. minor_cov=2/0 new_cov=17/11 polymorphism_frequency=9.333e-01 polymorphism_score=-0.6 prediction=consensus ref_cov=2/0 total_cov=19/11 RA 1202 . NC_000913 17350 0 G T consensus_score=88.8 frequency=1 major_base=T major_cov=19/11 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/11 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/11 RA 1203 . NC_000913 17383 0 A G bias_e_value=3069020 bias_p_value=0.661192 consensus_score=91.6 fisher_strand_p_value=0.3 frequency=1 ks_quality_p_value=1 major_base=G major_cov=21/8 major_frequency=9.667e-01 minor_base=T minor_cov=0/1 new_cov=21/8 polymorphism_frequency=9.667e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/9 RA 1204 . NC_000913 17385 0 C A consensus_score=93.1 frequency=1 major_base=A major_cov=21/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/9 RA 1205 . NC_000913 17399 0 A G consensus_score=89.2 frequency=1 major_base=G major_cov=21/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/9 RA 1206 . NC_000913 17436 0 C T consensus_score=89.8 frequency=1 major_base=T major_cov=23/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/9 RA 1207 . NC_000913 17578 0 C T bias_e_value=3871990 bias_p_value=0.834184 consensus_score=119.5 fisher_strand_p_value=0.515385 frequency=1 ks_quality_p_value=0.936328 major_base=T major_cov=27/11 major_frequency=9.500e-01 minor_base=C minor_cov=1/1 new_cov=27/11 polymorphism_frequency=9.500e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/1 total_cov=28/12 RA 1208 . NC_000913 17809 0 G T bias_e_value=4633620 bias_p_value=0.99827 consensus_score=140.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.941765 major_base=T major_cov=22/26 major_frequency=9.600e-01 minor_base=G minor_cov=1/1 new_cov=22/26 polymorphism_frequency=9.600e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=1/1 total_cov=23/27 RA 1209 . NC_000913 17830 0 T C bias_e_value=1985520 bias_p_value=0.427762 consensus_score=142.2 fisher_strand_p_value=0.478261 frequency=1 ks_quality_p_value=0.306182 major_base=C major_cov=21/24 major_frequency=9.783e-01 minor_base=T minor_cov=1/0 new_cov=21/24 polymorphism_frequency=9.783e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=22/24 RA 1210 . NC_000913 17893 0 T C bias_e_value=4380930 bias_p_value=0.943831 consensus_score=150.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.68413 major_base=C major_cov=26/24 major_frequency=9.804e-01 minor_base=T minor_cov=1/0 new_cov=26/24 polymorphism_frequency=9.804e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=27/24 RA 1211 . NC_000913 17908 0 A G bias_e_value=4637730 bias_p_value=0.999156 consensus_score=139.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.959189 major_base=G major_cov=25/23 major_frequency=9.796e-01 minor_base=A minor_cov=1/0 new_cov=25/23 polymorphism_frequency=9.796e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=26/24 RA 1212 . NC_000913 18093 0 C T bias_e_value=2942170 bias_p_value=0.633862 consensus_score=115.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.277988 major_base=T major_cov=21/21 major_frequency=9.767e-01 minor_base=C minor_cov=0/1 new_cov=21/21 polymorphism_frequency=9.767e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=21/22 RA 1213 . NC_000913 18118 0 T G bias_e_value=2365090 bias_p_value=0.509536 consensus_score=145.7 fisher_strand_p_value=0.468085 frequency=1 ks_quality_p_value=0.41107 major_base=G major_cov=25/21 major_frequency=9.787e-01 minor_base=T minor_cov=0/1 new_cov=25/21 polymorphism_frequency=9.787e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=0/1 total_cov=25/22 RA 1214 . NC_000913 18127 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=119.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=21/21 major_frequency=9.333e-01 minor_base=T minor_cov=2/1 new_cov=21/21 polymorphism_frequency=9.333e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=0/2 total_cov=23/24 RA 1215 . NC_000913 18169 0 T C bias_e_value=3361890 bias_p_value=0.724287 consensus_score=158.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.356583 major_base=C major_cov=24/30 major_frequency=9.474e-01 minor_base=T minor_cov=1/2 new_cov=24/30 polymorphism_frequency=9.474e-01 polymorphism_score=-0.2 prediction=consensus ref_cov=1/2 total_cov=26/32 RA 1216 . NC_000913 18253 0 G A bias_e_value=1479910 bias_p_value=0.318833 consensus_score=175.5 fisher_strand_p_value=0.673289 frequency=1 ks_quality_p_value=0.141234 major_base=A major_cov=31/33 major_frequency=9.275e-01 minor_base=G minor_cov=3/2 new_cov=31/33 polymorphism_frequency=9.275e-01 polymorphism_score=3.6 prediction=consensus ref_cov=3/2 total_cov=34/37 RA 1217 . NC_000913 18322 0 C T bias_e_value=1943400 bias_p_value=0.418688 consensus_score=191.9 fisher_strand_p_value=0.29759 frequency=1 ks_quality_p_value=0.47633 major_base=T major_cov=26/41 major_frequency=9.437e-01 minor_base=C minor_cov=3/1 new_cov=26/41 polymorphism_frequency=9.437e-01 polymorphism_score=2.1 prediction=consensus ref_cov=3/1 total_cov=30/43 RA 1218 . NC_000913 18477 0 T C consensus_score=104.0 frequency=1 major_base=C major_cov=3/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=3/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=3/32 RA 1219 . NC_000913 19014 0 C T bias_e_value=4635990 bias_p_value=0.99878 consensus_score=156.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.95102 major_base=T major_cov=24/30 major_frequency=9.153e-01 minor_base=C minor_cov=2/3 new_cov=24/30 polymorphism_frequency=9.153e-01 polymorphism_score=2.2 prediction=consensus ref_cov=2/3 total_cov=26/33 RA 1220 . NC_000913 19398 0 T G bias_e_value=4640590 bias_p_value=0.999772 consensus_score=218.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.97872 major_base=G major_cov=23/44 major_frequency=9.853e-01 minor_base=T minor_cov=0/1 new_cov=23/44 polymorphism_frequency=9.853e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=23/45 RA 1221 . NC_000913 19613 0 T C bias_e_value=4627500 bias_p_value=0.996951 consensus_score=104.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.922931 major_base=C major_cov=19/19 major_frequency=9.048e-01 minor_base=T minor_cov=2/2 new_cov=19/19 polymorphism_frequency=9.048e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=2/2 total_cov=21/21 RA 1222 . NC_000913 19627 0 G C bias_e_value=1324650 bias_p_value=0.285384 consensus_score=98.7 fisher_strand_p_value=0.594595 frequency=1 ks_quality_p_value=0.136767 major_base=C major_cov=16/19 major_frequency=9.211e-01 minor_base=G minor_cov=2/1 new_cov=16/19 polymorphism_frequency=9.211e-01 polymorphism_score=3.8 prediction=consensus ref_cov=2/1 total_cov=19/20 RA 1223 . NC_000913 19634 1 . C bias_e_value=4250090 bias_p_value=0.915641 consensus_score=94.9 fisher_strand_p_value=0.692795 frequency=1 ks_quality_p_value=0.892692 major_base=C major_cov=14/16 major_frequency=8.108e-01 minor_base=. minor_cov=4/3 new_cov=14/16 polymorphism_frequency=8.108e-01 polymorphism_score=16.4 prediction=consensus ref_cov=4/3 total_cov=18/19 RA 1224 . NC_000913 19670 0 T A bias_e_value=3735560 bias_p_value=0.804792 consensus_score=87.5 fisher_strand_p_value=0.61282 frequency=1 ks_quality_p_value=0.725112 major_base=A major_cov=15/13 major_frequency=8.750e-01 minor_base=T minor_cov=3/1 new_cov=15/13 polymorphism_frequency=8.750e-01 polymorphism_score=5.6 prediction=consensus ref_cov=3/1 total_cov=18/14 RA 1225 . NC_000913 20590 0 T C consensus_score=18.7 frequency=1 major_base=C major_cov=6/2 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=6/2 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=6/2 RA 1226 . NC_000913 20600 0 G A bias_e_value=4560320 bias_p_value=0.982477 consensus_score=19.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.818731 major_base=A major_cov=7/2 major_frequency=9.000e-01 minor_base=G minor_cov=1/0 new_cov=7/2 polymorphism_frequency=9.000e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=1/0 total_cov=8/2 RA 1227 . NC_000913 20605 0 A . bias_e_value=4560320 bias_p_value=0.982477 consensus_score=27.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.818731 major_base=. major_cov=7/2 major_frequency=9.000e-01 minor_base=A minor_cov=1/0 new_cov=7/2 polymorphism_frequency=9.000e-01 polymorphism_score=-1.2 prediction=consensus ref_cov=1/0 total_cov=8/2 RA 1228 . NC_000913 21617 0 A C consensus_score=166.3 frequency=1 major_base=C major_cov=39/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/29 RA 1229 . NC_000913 21619 0 A G consensus_score=195.4 frequency=1 major_base=G major_cov=39/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/29 RA 1230 . NC_000913 21750 0 A T bias_e_value=4407970 bias_p_value=0.949655 consensus_score=224.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.699952 major_base=T major_cov=34/37 major_frequency=9.726e-01 minor_base=A minor_cov=1/1 new_cov=34/37 polymorphism_frequency=9.726e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=1/1 total_cov=35/39 RA 1231 . NC_000913 21895 0 C T bias_e_value=4518570 bias_p_value=0.973483 consensus_score=150.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.778729 major_base=T major_cov=18/33 major_frequency=9.623e-01 minor_base=C minor_cov=1/1 new_cov=18/33 polymorphism_frequency=9.623e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=1/1 total_cov=19/35 RA 1232 . NC_000913 21910 0 C T bias_e_value=2675310 bias_p_value=0.57637 consensus_score=157.1 fisher_strand_p_value=0.254959 frequency=1 ks_quality_p_value=0.924566 major_base=T major_cov=16/35 major_frequency=9.444e-01 minor_base=C minor_cov=2/1 new_cov=16/35 polymorphism_frequency=9.444e-01 polymorphism_score=-2.0 prediction=consensus ref_cov=2/1 total_cov=18/37 RA 1233 . NC_000913 21922 0 C G bias_e_value=2853420 bias_p_value=0.614742 consensus_score=150.9 fisher_strand_p_value=0.263425 frequency=1 ks_quality_p_value=0.999748 major_base=G major_cov=16/34 major_frequency=9.434e-01 minor_base=C minor_cov=2/1 new_cov=16/34 polymorphism_frequency=9.434e-01 polymorphism_score=0.4 prediction=consensus ref_cov=2/1 total_cov=18/36 RA 1234 . NC_000913 21925 0 T G bias_e_value=4635660 bias_p_value=0.99871 consensus_score=135.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.949631 major_base=G major_cov=15/31 major_frequency=8.679e-01 minor_base=T minor_cov=2/5 new_cov=15/31 polymorphism_frequency=8.679e-01 polymorphism_score=-1.1 prediction=consensus ref_cov=2/5 total_cov=17/36 RA 1235 . NC_000913 21952 0 G A bias_e_value=3906920 bias_p_value=0.841708 consensus_score=174.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.493051 major_base=A major_cov=20/35 major_frequency=9.821e-01 minor_base=G minor_cov=0/1 new_cov=20/35 polymorphism_frequency=9.821e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=21/36 RA 1236 . NC_000913 22048 0 G A bias_e_value=3901800 bias_p_value=0.840607 consensus_score=149.6 fisher_strand_p_value=0.491497 frequency=1 ks_quality_p_value=1 major_base=A major_cov=23/24 major_frequency=9.592e-01 minor_base=G minor_cov=0/2 new_cov=23/24 polymorphism_frequency=9.592e-01 polymorphism_score=-6.3 prediction=consensus ref_cov=0/2 total_cov=23/26 RA 1237 . NC_000913 22373 0 T C bias_e_value=3043290 bias_p_value=0.655647 consensus_score=173.5 fisher_strand_p_value=0.557427 frequency=1 ks_quality_p_value=0.529978 major_base=C major_cov=37/23 major_frequency=9.524e-01 minor_base=T minor_cov=1/2 new_cov=37/23 polymorphism_frequency=9.524e-01 polymorphism_score=-0.7 prediction=consensus ref_cov=1/2 total_cov=38/25 RA 1238 . NC_000913 22468 0 C G bias_e_value=780443 bias_p_value=0.168139 consensus_score=182.1 fisher_strand_p_value=0.600333 frequency=1 ks_quality_p_value=0.0663111 major_base=G major_cov=31/27 major_frequency=9.508e-01 minor_base=C minor_cov=1/2 new_cov=31/27 polymorphism_frequency=9.508e-01 polymorphism_score=3.1 prediction=consensus ref_cov=1/2 total_cov=32/29 RA 1239 . NC_000913 22942 0 A G bias_e_value=3868220 bias_p_value=0.833372 consensus_score=189.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.481457 major_base=G major_cov=38/23 major_frequency=9.683e-01 minor_base=A minor_cov=1/1 new_cov=38/23 polymorphism_frequency=9.683e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=1/1 total_cov=40/25 RA 1240 . NC_000913 22945 0 T A bias_e_value=3922120 bias_p_value=0.844984 consensus_score=188.8 fisher_strand_p_value=0.64041 frequency=1 ks_quality_p_value=0.77718 major_base=A major_cov=37/23 major_frequency=9.375e-01 minor_base=T minor_cov=2/2 new_cov=37/23 polymorphism_frequency=9.375e-01 polymorphism_score=-0.6 prediction=consensus ref_cov=2/2 total_cov=40/25 RA 1241 . NC_000913 23032 0 C T bias_e_value=3808310 bias_p_value=0.820465 consensus_score=212.6 fisher_strand_p_value=0.645044 frequency=1 ks_quality_p_value=0.719681 major_base=T major_cov=44/28 major_frequency=9.474e-01 minor_base=C minor_cov=2/2 new_cov=44/28 polymorphism_frequency=9.474e-01 polymorphism_score=1.6 prediction=consensus ref_cov=2/2 total_cov=46/30 RA 1242 . NC_000913 23038 0 A G bias_e_value=4216640 bias_p_value=0.908435 consensus_score=187.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.603821 major_base=G major_cov=41/26 major_frequency=9.306e-01 minor_base=A minor_cov=3/2 new_cov=41/26 polymorphism_frequency=9.306e-01 polymorphism_score=2.8 prediction=consensus ref_cov=3/2 total_cov=44/29 RA 1243 . NC_000913 23104 0 A G bias_e_value=4355260 bias_p_value=0.938299 consensus_score=230.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.669949 major_base=G major_cov=44/30 major_frequency=9.487e-01 minor_base=A minor_cov=2/2 new_cov=44/30 polymorphism_frequency=9.487e-01 polymorphism_score=1.8 prediction=consensus ref_cov=2/2 total_cov=46/35 RA 1244 . NC_000913 23116 0 C T bias_e_value=4391200 bias_p_value=0.946043 consensus_score=218.4 fisher_strand_p_value=0.690024 frequency=1 ks_quality_p_value=1 major_base=T major_cov=43/30 major_frequency=9.241e-01 minor_base=C minor_cov=3/3 new_cov=43/30 polymorphism_frequency=9.241e-01 polymorphism_score=1.0 prediction=consensus ref_cov=3/3 total_cov=46/33 RA 1245 . NC_000913 23137 0 C G bias_e_value=1702170 bias_p_value=0.366716 consensus_score=244.3 fisher_strand_p_value=0.644993 frequency=1 ks_quality_p_value=0.180447 major_base=G major_cov=46/32 major_frequency=9.512e-01 minor_base=C minor_cov=3/1 new_cov=46/32 polymorphism_frequency=9.512e-01 polymorphism_score=5.5 prediction=consensus ref_cov=3/1 total_cov=49/33 RA 1246 . NC_000913 23161 0 A T bias_e_value=4424030 bias_p_value=0.953116 consensus_score=255.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.709848 major_base=T major_cov=49/32 major_frequency=9.759e-01 minor_base=A minor_cov=1/1 new_cov=49/32 polymorphism_frequency=9.759e-01 polymorphism_score=-1.3 prediction=consensus ref_cov=1/1 total_cov=50/34 RA 1247 . NC_000913 23270 0 G A bias_e_value=4641310 bias_p_value=0.999926 consensus_score=259.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.98784 major_base=A major_cov=49/40 major_frequency=9.889e-01 minor_base=C minor_cov=1/0 new_cov=49/40 polymorphism_frequency=9.889e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/40 RA 1248 . NC_000913 23297 0 C T bias_e_value=4610220 bias_p_value=0.993228 consensus_score=239.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.885904 major_base=T major_cov=48/42 major_frequency=9.677e-01 minor_base=G minor_cov=2/1 new_cov=48/42 polymorphism_frequency=9.677e-01 polymorphism_score=-6.0 prediction=consensus ref_cov=0/0 total_cov=52/43 RA 1249 . NC_000913 23803 0 T C consensus_score=383.1 frequency=1 major_base=C major_cov=59/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/60 RA 1250 . NC_000913 23860 0 T C bias_e_value=2702510 bias_p_value=0.582229 consensus_score=390.1 fisher_strand_p_value=0.239805 frequency=1 ks_quality_p_value=1 major_base=C major_cov=58/62 major_frequency=9.836e-01 minor_base=A minor_cov=2/0 new_cov=58/62 polymorphism_frequency=9.836e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/62 RA 1251 . NC_000913 23896 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=339.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=50/55 major_frequency=9.906e-01 minor_base=G minor_cov=0/1 new_cov=50/55 polymorphism_frequency=9.906e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/56 RA 1252 . NC_000913 23897 0 G A consensus_score=350.4 frequency=1 major_base=A major_cov=50/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/56 RA 1253 . NC_000913 23899 0 T C consensus_score=342.1 frequency=1 major_base=C major_cov=50/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/56 RA 1254 . NC_000913 23956 0 T C bias_e_value=3697010 bias_p_value=0.796486 consensus_score=330.4 fisher_strand_p_value=0.435644 frequency=1 ks_quality_p_value=0.996837 major_base=C major_cov=43/57 major_frequency=9.901e-01 minor_base=A minor_cov=1/0 new_cov=43/57 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/57 RA 1255 . NC_000913 23962 0 C T consensus_score=307.1 frequency=1 major_base=T major_cov=42/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/55 RA 1256 . NC_000913 23977 0 C T consensus_score=275.5 frequency=1 major_base=T major_cov=37/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/49 RA 1257 . NC_000913 23980 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=270.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=36/47 major_frequency=9.881e-01 minor_base=C minor_cov=0/1 new_cov=36/47 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=37/49 RA 1258 . NC_000913 23981 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=263.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=35/48 major_frequency=9.765e-01 minor_base=T minor_cov=1/1 new_cov=35/48 polymorphism_frequency=9.765e-01 polymorphism_score=-7.1 prediction=consensus ref_cov=1/1 total_cov=37/49 RA 1259 . NC_000913 23983 0 G C bias_e_value=3677890 bias_p_value=0.792367 consensus_score=270.2 fisher_strand_p_value=0.435294 frequency=1 ks_quality_p_value=0.986368 major_base=C major_cov=36/48 major_frequency=9.882e-01 minor_base=A minor_cov=1/0 new_cov=36/48 polymorphism_frequency=9.882e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=37/49 RA 1260 . NC_000913 23986 0 T C bias_e_value=4640910 bias_p_value=0.999841 consensus_score=268.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.982233 major_base=C major_cov=36/48 major_frequency=9.882e-01 minor_base=T minor_cov=0/1 new_cov=36/48 polymorphism_frequency=9.882e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=37/49 RA 1261 . NC_000913 24085 0 A G bias_e_value=3240110 bias_p_value=0.698051 consensus_score=253.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.331983 major_base=G major_cov=29/50 major_frequency=9.753e-01 minor_base=A minor_cov=1/1 new_cov=29/50 polymorphism_frequency=9.753e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=1/1 total_cov=30/51 RA 1262 . NC_000913 24091 0 C T bias_e_value=4079860 bias_p_value=0.878967 consensus_score=232.2 fisher_strand_p_value=0.558321 frequency=1 ks_quality_p_value=0.985565 major_base=T major_cov=28/45 major_frequency=9.605e-01 minor_base=C minor_cov=2/1 new_cov=28/45 polymorphism_frequency=9.605e-01 polymorphism_score=-2.1 prediction=consensus ref_cov=2/1 total_cov=30/47 RA 1263 . NC_000913 24094 0 C T bias_e_value=4623620 bias_p_value=0.996116 consensus_score=224.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.913163 major_base=T major_cov=29/43 major_frequency=9.730e-01 minor_base=C minor_cov=1/1 new_cov=29/43 polymorphism_frequency=9.730e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=1/1 total_cov=30/46 RA 1264 . NC_000913 24133 0 G A bias_e_value=4640370 bias_p_value=0.999724 consensus_score=236.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.976605 major_base=A major_cov=33/44 major_frequency=9.747e-01 minor_base=G minor_cov=1/1 new_cov=33/44 polymorphism_frequency=9.747e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/1 total_cov=34/45 RA 1265 . NC_000913 24136 0 T C bias_e_value=4622110 bias_p_value=0.99579 consensus_score=248.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.909655 major_base=C major_cov=33/44 major_frequency=9.747e-01 minor_base=T minor_cov=1/1 new_cov=33/44 polymorphism_frequency=9.747e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=1/1 total_cov=34/45 RA 1266 . NC_000913 24217 0 T C bias_e_value=4616500 bias_p_value=0.994582 consensus_score=269.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.897724 major_base=C major_cov=42/46 major_frequency=9.670e-01 minor_base=T minor_cov=1/2 new_cov=42/46 polymorphism_frequency=9.670e-01 polymorphism_score=-3.0 prediction=consensus ref_cov=1/2 total_cov=46/49 RA 1267 . NC_000913 24340 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=341.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=53/49 major_frequency=9.714e-01 minor_base=A minor_cov=2/1 new_cov=53/49 polymorphism_frequency=9.714e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/50 RA 1268 . NC_000913 24616 0 T C bias_e_value=2707340 bias_p_value=0.583272 consensus_score=317.1 fisher_strand_p_value=0.254396 frequency=1 ks_quality_p_value=0.945518 major_base=C major_cov=56/46 major_frequency=9.714e-01 minor_base=A minor_cov=3/0 new_cov=56/46 polymorphism_frequency=9.714e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/47 RA 1269 . NC_000913 24646 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=294.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=53/40 major_frequency=9.789e-01 minor_base=T minor_cov=1/1 new_cov=53/40 polymorphism_frequency=9.789e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/41 RA 1270 . NC_000913 24670 0 G T bias_e_value=1720420 bias_p_value=0.370649 consensus_score=234.9 fisher_strand_p_value=0.118222 frequency=1 ks_quality_p_value=1 major_base=T major_cov=44/44 major_frequency=9.565e-01 minor_base=A minor_cov=4/0 new_cov=44/44 polymorphism_frequency=9.565e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=50/44 RA 1271 . NC_000913 24781 0 C T bias_e_value=3782250 bias_p_value=0.81485 consensus_score=289.0 fisher_strand_p_value=0.503866 frequency=1 ks_quality_p_value=0.906951 major_base=T major_cov=42/53 major_frequency=9.794e-01 minor_base=G minor_cov=0/2 new_cov=42/53 polymorphism_frequency=9.794e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/55 RA 1272 . NC_000913 24799 0 G A bias_e_value=2248140 bias_p_value=0.484341 consensus_score=307.2 fisher_strand_p_value=0.177489 frequency=1 ks_quality_p_value=1 major_base=A major_cov=40/57 major_frequency=9.798e-01 minor_base=G minor_cov=2/0 new_cov=40/57 polymorphism_frequency=9.798e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=2/0 total_cov=42/58 RA 1273 . NC_000913 24935 0 T G bias_e_value=4344340 bias_p_value=0.935946 consensus_score=309.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.664137 major_base=G major_cov=40/61 major_frequency=9.352e-01 minor_base=T minor_cov=3/4 new_cov=40/61 polymorphism_frequency=9.352e-01 polymorphism_score=-1.1 prediction=consensus ref_cov=3/4 total_cov=43/65 RA 1274 . NC_000913 24977 0 C T bias_e_value=2185100 bias_p_value=0.470758 consensus_score=288.6 fisher_strand_p_value=0.311601 frequency=1 ks_quality_p_value=0.544711 major_base=T major_cov=40/56 major_frequency=9.600e-01 minor_base=C minor_cov=3/1 new_cov=40/56 polymorphism_frequency=9.600e-01 polymorphism_score=0.2 prediction=consensus ref_cov=3/1 total_cov=43/59 RA 1275 . NC_000913 25598 0 A G consensus_score=150.1 frequency=1 major_base=G major_cov=27/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/21 RA 1276 . NC_000913 25677 0 G A bias_e_value=3905850 bias_p_value=0.841478 consensus_score=138.2 fisher_strand_p_value=0.507863 frequency=1 ks_quality_p_value=0.970193 major_base=A major_cov=26/19 major_frequency=9.574e-01 minor_base=C minor_cov=2/0 new_cov=26/19 polymorphism_frequency=9.574e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/19 RA 1277 . NC_000913 25685 0 G A consensus_score=146.0 frequency=1 major_base=A major_cov=27/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/20 RA 1278 . NC_000913 26534 0 T C bias_e_value=1492120 bias_p_value=0.321464 consensus_score=203.5 fisher_strand_p_value=0.096212 frequency=1 ks_quality_p_value=1 major_base=C major_cov=31/39 major_frequency=9.589e-01 minor_base=A minor_cov=3/0 new_cov=31/39 polymorphism_frequency=9.589e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=34/41 RA 1279 . NC_000913 26606 0 T C bias_e_value=2443760 bias_p_value=0.526486 consensus_score=160.2 fisher_strand_p_value=0.250847 frequency=1 ks_quality_p_value=0.808738 major_base=C major_cov=26/31 major_frequency=9.500e-01 minor_base=T minor_cov=0/3 new_cov=26/31 polymorphism_frequency=9.500e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=0/3 total_cov=26/34 RA 1280 . NC_000913 26609 0 C T bias_e_value=3477120 bias_p_value=0.749113 consensus_score=170.2 fisher_strand_p_value=0.498539 frequency=1 ks_quality_p_value=0.7652 major_base=T major_cov=26/31 major_frequency=9.661e-01 minor_base=C minor_cov=0/2 new_cov=26/31 polymorphism_frequency=9.661e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=0/2 total_cov=26/34 RA 1281 . NC_000913 26621 0 A G bias_e_value=3916890 bias_p_value=0.843857 consensus_score=187.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.496102 major_base=G major_cov=28/34 major_frequency=9.841e-01 minor_base=A minor_cov=0/1 new_cov=28/34 polymorphism_frequency=9.841e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=28/35 RA 1282 . NC_000913 26624 0 T G bias_e_value=4255380 bias_p_value=0.916782 consensus_score=196.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.620837 major_base=G major_cov=28/35 major_frequency=9.844e-01 minor_base=T minor_cov=0/1 new_cov=28/35 polymorphism_frequency=9.844e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/1 total_cov=28/36 RA 1283 . NC_000913 26636 0 T C bias_e_value=3885910 bias_p_value=0.837182 consensus_score=187.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.486708 major_base=C major_cov=30/35 major_frequency=9.701e-01 minor_base=T minor_cov=1/1 new_cov=30/35 polymorphism_frequency=9.701e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=1/1 total_cov=32/37 RA 1284 . NC_000913 26648 0 C T bias_e_value=4616520 bias_p_value=0.994587 consensus_score=203.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.897768 major_base=T major_cov=32/34 major_frequency=9.706e-01 minor_base=C minor_cov=1/1 new_cov=32/34 polymorphism_frequency=9.706e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/1 total_cov=33/36 RA 1285 . NC_000913 26663 0 G T bias_e_value=2669720 bias_p_value=0.575166 consensus_score=208.6 fisher_strand_p_value=0.239752 frequency=1 ks_quality_p_value=0.979739 major_base=T major_cov=33/34 major_frequency=9.571e-01 minor_base=A minor_cov=3/0 new_cov=33/34 polymorphism_frequency=9.571e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=37/34 RA 1286 . NC_000913 26666 0 A G bias_e_value=3853070 bias_p_value=0.830109 consensus_score=227.5 fisher_strand_p_value=0.493763 frequency=1 ks_quality_p_value=0.966091 major_base=G major_cov=35/34 major_frequency=9.718e-01 minor_base=A minor_cov=2/0 new_cov=35/34 polymorphism_frequency=9.718e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=2/0 total_cov=37/34 RA 1287 . NC_000913 27026 0 C T bias_e_value=2702680 bias_p_value=0.582267 consensus_score=272.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.239831 major_base=T major_cov=40/53 major_frequency=9.894e-01 minor_base=C minor_cov=0/1 new_cov=40/53 polymorphism_frequency=9.894e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=40/54 RA 1288 . NC_000913 27104 0 G A bias_e_value=3497820 bias_p_value=0.753572 consensus_score=315.0 fisher_strand_p_value=0.386139 frequency=1 ks_quality_p_value=1 major_base=A major_cov=38/62 major_frequency=9.901e-01 minor_base=G minor_cov=1/0 new_cov=38/62 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=39/62 RA 1289 . NC_000913 27367 0 A C bias_e_value=4641650 bias_p_value=1 consensus_score=225.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=34/37 major_frequency=9.861e-01 minor_base=A minor_cov=0/1 new_cov=34/37 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=34/38 RA 1290 . NC_000913 45950 0 G A bias_e_value=3649100 bias_p_value=0.786164 consensus_score=167.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.422097 major_base=A major_cov=26/29 major_frequency=9.649e-01 minor_base=G minor_cov=1/1 new_cov=26/29 polymorphism_frequency=9.649e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=1/1 total_cov=27/31 RA 1291 . NC_000913 45978 0 C T bias_e_value=4634560 bias_p_value=0.998472 consensus_score=166.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.945235 major_base=T major_cov=27/31 major_frequency=9.667e-01 minor_base=C minor_cov=1/1 new_cov=27/31 polymorphism_frequency=9.667e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/1 total_cov=29/32 RA 1292 . NC_000913 46028 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=192.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999471 major_base=C major_cov=29/32 major_frequency=9.839e-01 minor_base=T minor_cov=0/1 new_cov=29/32 polymorphism_frequency=9.839e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=29/33 RA 1293 . NC_000913 46247 0 T C bias_e_value=4435790 bias_p_value=0.955649 consensus_score=183.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.717355 major_base=C major_cov=27/31 major_frequency=9.667e-01 minor_base=T minor_cov=1/1 new_cov=27/31 polymorphism_frequency=9.667e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/1 total_cov=28/32 RA 1294 . NC_000913 46253 0 G C bias_e_value=4465550 bias_p_value=0.962061 consensus_score=184.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.737499 major_base=C major_cov=26/31 major_frequency=9.661e-01 minor_base=G minor_cov=1/1 new_cov=26/31 polymorphism_frequency=9.661e-01 polymorphism_score=-0.5 prediction=consensus ref_cov=1/1 total_cov=28/32 RA 1295 . NC_000913 46277 0 T C bias_e_value=3306370 bias_p_value=0.712327 consensus_score=189.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.345164 major_base=C major_cov=28/35 major_frequency=9.692e-01 minor_base=T minor_cov=1/1 new_cov=28/35 polymorphism_frequency=9.692e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=1/1 total_cov=30/36 RA 1296 . NC_000913 46448 0 C A bias_e_value=2211100 bias_p_value=0.476361 consensus_score=151.6 fisher_strand_p_value=0.190799 frequency=1 ks_quality_p_value=0.906231 major_base=A major_cov=21/29 major_frequency=9.615e-01 minor_base=C minor_cov=2/0 new_cov=21/29 polymorphism_frequency=9.615e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=2/0 total_cov=24/29 RA 1297 . NC_000913 46634 0 G T bias_e_value=4236430 bias_p_value=0.912699 consensus_score=189.0 fisher_strand_p_value=0.612392 frequency=1 ks_quality_p_value=1 major_base=T major_cov=28/30 major_frequency=9.508e-01 minor_base=G minor_cov=2/1 new_cov=28/30 polymorphism_frequency=9.508e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=2/1 total_cov=32/31 RA 1298 . NC_000913 46652 0 A G consensus_score=182.4 frequency=1 major_base=G major_cov=29/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/28 RA 1299 . NC_000913 46655 0 A G bias_e_value=3835420 bias_p_value=0.826306 consensus_score=177.5 fisher_strand_p_value=0.491228 frequency=1 ks_quality_p_value=0.960693 major_base=G major_cov=29/27 major_frequency=9.825e-01 minor_base=T minor_cov=0/1 new_cov=29/27 polymorphism_frequency=9.825e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/28 RA 1300 . NC_000913 46661 0 T C consensus_score=178.6 frequency=1 major_base=C major_cov=31/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/28 RA 1301 . NC_000913 46790 0 A G bias_e_value=4636620 bias_p_value=0.998917 consensus_score=123.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.953819 major_base=G major_cov=15/30 major_frequency=9.574e-01 minor_base=T minor_cov=0/2 new_cov=15/30 polymorphism_frequency=9.574e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=15/33 RA 1302 . NC_000913 46943 0 T C bias_e_value=4641640 bias_p_value=0.999996 consensus_score=174.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99731 major_base=C major_cov=24/30 major_frequency=9.818e-01 minor_base=G minor_cov=0/1 new_cov=24/30 polymorphism_frequency=9.818e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/31 RA 1303 . NC_000913 46976 0 A G bias_e_value=3839450 bias_p_value=0.827174 consensus_score=191.5 fisher_strand_p_value=0.47541 frequency=1 ks_quality_p_value=0.995094 major_base=G major_cov=28/32 major_frequency=9.836e-01 minor_base=T minor_cov=1/0 new_cov=28/32 polymorphism_frequency=9.836e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/32 RA 1304 . NC_000913 47099 0 G A bias_e_value=4639170 bias_p_value=0.999465 consensus_score=160.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.967472 major_base=A major_cov=32/22 major_frequency=9.643e-01 minor_base=G minor_cov=1/1 new_cov=32/22 polymorphism_frequency=9.643e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/1 total_cov=33/24 RA 1305 . NC_000913 47434 0 T C bias_e_value=4577080 bias_p_value=0.986089 consensus_score=253.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.837903 major_base=C major_cov=46/36 major_frequency=9.647e-01 minor_base=T minor_cov=2/1 new_cov=46/36 polymorphism_frequency=9.647e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=2/1 total_cov=48/38 RA 1306 . NC_000913 48033 0 T G bias_e_value=4201970 bias_p_value=0.905275 consensus_score=296.7 fisher_strand_p_value=0.612903 frequency=1 ks_quality_p_value=0.975065 major_base=G major_cov=47/44 major_frequency=9.681e-01 minor_base=T minor_cov=1/2 new_cov=47/44 polymorphism_frequency=9.681e-01 polymorphism_score=NA prediction=consensus ref_cov=1/2 total_cov=48/46 RA 1307 . NC_000913 66635 0 C T bias_e_value=3905230 bias_p_value=0.841345 consensus_score=204.7 fisher_strand_p_value=0.492537 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/34 major_frequency=9.706e-01 minor_base=A minor_cov=2/0 new_cov=32/34 polymorphism_frequency=9.706e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/34 RA 1308 . NC_000913 71170 0 T C bias_e_value=4631580 bias_p_value=0.99783 consensus_score=152.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.934853 major_base=C major_cov=30/22 major_frequency=9.455e-01 minor_base=T minor_cov=2/1 new_cov=30/22 polymorphism_frequency=9.455e-01 polymorphism_score=-1.6 prediction=consensus ref_cov=2/1 total_cov=32/23 RA 1309 . NC_000913 154182 0 C T bias_e_value=4086270 bias_p_value=0.880349 consensus_score=91.1 fisher_strand_p_value=0.564553 frequency=1 ks_quality_p_value=0.978799 major_base=T major_cov=19/13 major_frequency=9.143e-01 minor_base=C minor_cov=1/2 new_cov=19/13 polymorphism_frequency=9.143e-01 polymorphism_score=-0.3 prediction=consensus ref_cov=1/2 total_cov=21/15 RA 1310 . NC_000913 156068 0 A G bias_e_value=4639320 bias_p_value=0.999497 consensus_score=108.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.968457 major_base=G major_cov=20/19 major_frequency=9.750e-01 minor_base=T minor_cov=1/0 new_cov=20/19 polymorphism_frequency=9.750e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/19 RA 1311 . NC_000913 193327 0 C T bias_e_value=4380140 bias_p_value=0.94366 consensus_score=232.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.683681 major_base=T major_cov=31/45 major_frequency=9.500e-01 minor_base=C minor_cov=2/2 new_cov=31/45 polymorphism_frequency=9.500e-01 polymorphism_score=1.6 prediction=consensus ref_cov=2/2 total_cov=34/48 RA 1312 . NC_000913 271817 0 G A bias_e_value=4619780 bias_p_value=0.995289 consensus_score=176.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.904513 major_base=A major_cov=31/31 major_frequency=9.841e-01 minor_base=G minor_cov=0/1 new_cov=31/31 polymorphism_frequency=9.841e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=0/1 total_cov=31/32 RA 1313 . NC_000913 271822 0 G A bias_e_value=4580820 bias_p_value=0.986895 consensus_score=178.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.842537 major_base=A major_cov=31/30 major_frequency=9.839e-01 minor_base=G minor_cov=0/1 new_cov=31/30 polymorphism_frequency=9.839e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=31/32 RA 1314 . NC_000913 271834 0 C T bias_e_value=4546280 bias_p_value=0.979453 consensus_score=164.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.804255 major_base=T major_cov=31/28 major_frequency=9.672e-01 minor_base=C minor_cov=1/1 new_cov=31/28 polymorphism_frequency=9.672e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=1/1 total_cov=32/30 RA 1315 . NC_000913 271838 0 T A bias_e_value=4223020 bias_p_value=0.909809 consensus_score=164.5 fisher_strand_p_value=0.606557 frequency=1 ks_quality_p_value=1 major_base=A major_cov=31/28 major_frequency=9.516e-01 minor_base=T minor_cov=1/2 new_cov=31/28 polymorphism_frequency=9.516e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=1/2 total_cov=32/30 RA 1316 . NC_000913 271876 0 A G bias_e_value=3277170 bias_p_value=0.706035 consensus_score=133.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.339296 major_base=G major_cov=24/24 major_frequency=9.412e-01 minor_base=A minor_cov=2/1 new_cov=24/24 polymorphism_frequency=9.412e-01 polymorphism_score=0.1 prediction=consensus ref_cov=2/1 total_cov=26/25 RA 1317 . NC_000913 271901 0 G A bias_e_value=3607170 bias_p_value=0.777131 consensus_score=100.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.411771 major_base=A major_cov=20/21 major_frequency=9.318e-01 minor_base=G minor_cov=2/1 new_cov=20/21 polymorphism_frequency=9.318e-01 polymorphism_score=1.2 prediction=consensus ref_cov=2/1 total_cov=22/23 RA 1318 . NC_000913 271943 0 A G bias_e_value=4530430 bias_p_value=0.976039 consensus_score=49.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.789232 major_base=G major_cov=12/16 major_frequency=8.235e-01 minor_base=A minor_cov=3/3 new_cov=12/16 polymorphism_frequency=8.235e-01 polymorphism_score=6.3 prediction=consensus ref_cov=3/3 total_cov=15/19 RA 1319 . NC_000913 271946 0 G A bias_e_value=4635950 bias_p_value=0.998771 consensus_score=48.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.95083 major_base=A major_cov=12/16 major_frequency=8.235e-01 minor_base=G minor_cov=3/3 new_cov=12/16 polymorphism_frequency=8.235e-01 polymorphism_score=7.9 prediction=consensus ref_cov=3/3 total_cov=15/19 RA 1320 . NC_000913 271964 0 C T bias_e_value=2679370 bias_p_value=0.577246 consensus_score=37.8 fisher_strand_p_value=0.651341 frequency=1 ks_quality_p_value=0.36284 major_base=T major_cov=11/13 major_frequency=8.276e-01 minor_base=C minor_cov=3/2 new_cov=11/13 polymorphism_frequency=8.276e-01 polymorphism_score=3.0 prediction=consensus ref_cov=3/2 total_cov=14/15 RA 1321 . NC_000913 271967 0 T G bias_e_value=677373 bias_p_value=0.145934 consensus_score=38.4 fisher_strand_p_value=0.651341 frequency=1 ks_quality_p_value=0.0508279 major_base=G major_cov=11/13 major_frequency=8.276e-01 minor_base=T minor_cov=3/2 new_cov=11/13 polymorphism_frequency=8.276e-01 polymorphism_score=3.9 prediction=consensus ref_cov=3/2 total_cov=14/15 RA 1322 . NC_000913 284535 0 T G bias_e_value=4637950 bias_p_value=0.999203 consensus_score=350.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.960332 major_base=G major_cov=55/64 major_frequency=9.917e-01 minor_base=T minor_cov=0/1 new_cov=55/64 polymorphism_frequency=9.917e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=55/65 RA 1323 . NC_000913 292019 0 C T bias_e_value=4526900 bias_p_value=0.975279 consensus_score=156.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.786045 major_base=T major_cov=29/23 major_frequency=9.630e-01 minor_base=C minor_cov=1/1 new_cov=29/23 polymorphism_frequency=9.630e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=1/1 total_cov=30/24 RA 1324 . NC_000913 297187 0 G C bias_e_value=3952520 bias_p_value=0.851534 consensus_score=103.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.507231 major_base=C major_cov=21/12 major_frequency=9.429e-01 minor_base=G minor_cov=1/1 new_cov=21/12 polymorphism_frequency=9.429e-01 polymorphism_score=0.4 prediction=consensus ref_cov=1/1 total_cov=22/14 RA 1325 . NC_000913 306294 0 C T bias_e_value=3150270 bias_p_value=0.678695 consensus_score=170.3 fisher_strand_p_value=0.31785 frequency=1 ks_quality_p_value=0.990521 major_base=T major_cov=24/32 major_frequency=9.333e-01 minor_base=A minor_cov=3/1 new_cov=24/32 polymorphism_frequency=9.333e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=0/1 total_cov=27/34 RA 1326 . NC_000913 309381 0 C T bias_e_value=1962330 bias_p_value=0.422766 consensus_score=232.4 fisher_strand_p_value=0.196842 frequency=1 ks_quality_p_value=0.730771 major_base=T major_cov=42/32 major_frequency=9.737e-01 minor_base=C minor_cov=0/2 new_cov=42/32 polymorphism_frequency=9.737e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=0/2 total_cov=42/34 RA 1327 . NC_000913 309985 0 T A bias_e_value=3724390 bias_p_value=0.802385 consensus_score=241.9 fisher_strand_p_value=0.441558 frequency=1 ks_quality_p_value=0.999658 major_base=A major_cov=33/43 major_frequency=9.870e-01 minor_base=C minor_cov=1/0 new_cov=33/43 polymorphism_frequency=9.870e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/43 RA 1328 . NC_000913 321260 0 A T consensus_score=79.1 frequency=1 major_base=T major_cov=14/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=14/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/14 RA 1329 . NC_000913 341180 0 C T bias_e_value=2552790 bias_p_value=0.549974 consensus_score=136.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.217937 major_base=T major_cov=27/19 major_frequency=9.583e-01 minor_base=C minor_cov=1/1 new_cov=27/19 polymorphism_frequency=9.583e-01 polymorphism_score=-1.9 prediction=consensus ref_cov=1/1 total_cov=28/20 RA 1330 . NC_000913 410666 0 C T bias_e_value=4617510 bias_p_value=0.994798 consensus_score=234.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.899747 major_base=T major_cov=32/47 major_frequency=9.753e-01 minor_base=C minor_cov=1/1 new_cov=32/47 polymorphism_frequency=9.753e-01 polymorphism_score=-3.2 prediction=consensus ref_cov=1/1 total_cov=34/49 RA 1331 . NC_000913 421027 0 C T bias_e_value=3864660 bias_p_value=0.832604 consensus_score=154.8 fisher_strand_p_value=0.480769 frequency=1 ks_quality_p_value=0.999246 major_base=T major_cov=27/24 major_frequency=9.808e-01 minor_base=G minor_cov=0/1 new_cov=27/24 polymorphism_frequency=9.808e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/25 RA 1332 . NC_000913 433635 0 G A bias_e_value=11016.7 bias_p_value=0.00237345 consensus_reject=FREQUENCY_CUTOFF consensus_score=69.9 fisher_strand_p_value=0.000271577 frequency=2.281e-01 ks_quality_p_value=0.942754 major_base=G major_cov=24/20 major_frequency=7.719e-01 minor_base=A minor_cov=0/13 new_cov=0/13 polymorphism_frequency=2.281e-01 polymorphism_score=12.9 prediction=polymorphism ref_cov=24/20 total_cov=24/34 RA 1333 . NC_000913 472849 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=159.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99915 major_base=G major_cov=21/27 major_frequency=9.796e-01 minor_base=T minor_cov=0/1 new_cov=21/27 polymorphism_frequency=9.796e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/28 RA 1334 . NC_000913 495622 0 C T bias_e_value=3480930 bias_p_value=0.749934 consensus_score=163.6 fisher_strand_p_value=0.612392 frequency=1 ks_quality_p_value=0.62433 major_base=T major_cov=28/30 major_frequency=9.508e-01 minor_base=C minor_cov=2/1 new_cov=28/30 polymorphism_frequency=9.508e-01 polymorphism_score=0.1 prediction=consensus ref_cov=2/1 total_cov=30/33 RA 1335 . NC_000913 500988 0 C T bias_e_value=4231780 bias_p_value=0.911697 consensus_score=173.6 fisher_strand_p_value=0.610358 frequency=1 ks_quality_p_value=1 major_base=T major_cov=20/38 major_frequency=9.355e-01 minor_base=C minor_cov=2/2 new_cov=20/38 polymorphism_frequency=9.355e-01 polymorphism_score=0.3 prediction=consensus ref_cov=2/2 total_cov=22/41 RA 1336 . NC_000913 514434 0 C T bias_e_value=4247690 bias_p_value=0.915125 consensus_score=256.8 fisher_strand_p_value=0.624316 frequency=1 ks_quality_p_value=0.988892 major_base=T major_cov=46/39 major_frequency=9.551e-01 minor_base=C minor_cov=3/1 new_cov=46/39 polymorphism_frequency=9.551e-01 polymorphism_score=-0.0 prediction=consensus ref_cov=3/1 total_cov=49/40 RA 1337 . NC_000913 534742 0 G A bias_e_value=3909500 bias_p_value=0.842265 consensus_score=234.1 fisher_strand_p_value=0.493839 frequency=1 ks_quality_p_value=1 major_base=A major_cov=38/38 major_frequency=9.744e-01 minor_base=C minor_cov=0/2 new_cov=38/38 polymorphism_frequency=9.744e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/40 RA 1338 . NC_000913 582597 0 C T consensus_score=69.2 frequency=1 major_base=T major_cov=10/13 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=10/13 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=10/13 RA 1339 . NC_000913 602835 0 G A bias_e_value=1242070 bias_p_value=0.267591 consensus_score=196.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.0743531 major_base=A major_cov=34/32 major_frequency=9.706e-01 minor_base=G minor_cov=1/1 new_cov=34/32 polymorphism_frequency=9.706e-01 polymorphism_score=-1.9 prediction=consensus ref_cov=1/1 total_cov=36/34 RA 1340 . NC_000913 674259 0 G A bias_e_value=3915630 bias_p_value=0.843585 consensus_score=170.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.495715 major_base=A major_cov=29/28 major_frequency=9.500e-01 minor_base=G minor_cov=2/1 new_cov=29/28 polymorphism_frequency=9.500e-01 polymorphism_score=0.5 prediction=consensus ref_cov=2/1 total_cov=32/29 RA 1341 . NC_000913 677829 0 T C bias_e_value=72743.1 bias_p_value=0.0156718 consensus_score=39.6 fisher_strand_p_value=0.0307692 frequency=1 ks_quality_p_value=0.0715497 major_base=C major_cov=0/21 major_frequency=8.077e-01 minor_base=T minor_cov=2/3 new_cov=0/21 polymorphism_frequency=8.077e-01 polymorphism_score=6.0 prediction=consensus ref_cov=2/3 total_cov=2/24 RA 1342 . NC_000913 694941 0 G A bias_e_value=3896720 bias_p_value=0.83951 consensus_score=131.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.489956 major_base=A major_cov=24/20 major_frequency=9.565e-01 minor_base=G minor_cov=1/1 new_cov=24/20 polymorphism_frequency=9.565e-01 polymorphism_score=-1.6 prediction=consensus ref_cov=1/1 total_cov=26/21 RA 1343 . NC_000913 696470 0 C T consensus_score=139.0 frequency=1 major_base=T major_cov=20/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/24 RA 1344 . NC_000913 708774 0 G A bias_e_value=3830780 bias_p_value=0.825304 consensus_score=157.9 fisher_strand_p_value=0.470588 frequency=1 ks_quality_p_value=1 major_base=A major_cov=23/27 major_frequency=9.804e-01 minor_base=C minor_cov=1/0 new_cov=23/27 polymorphism_frequency=9.804e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/27 RA 1345 . NC_000913 721604 0 G A bias_e_value=2527750 bias_p_value=0.544579 consensus_score=229.9 fisher_strand_p_value=0.233684 frequency=1 ks_quality_p_value=0.917539 major_base=A major_cov=35/39 major_frequency=9.737e-01 minor_base=G minor_cov=2/0 new_cov=35/39 polymorphism_frequency=9.737e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=2/0 total_cov=39/39 RA 1346 . NC_000913 780624 0 C T bias_e_value=3802300 bias_p_value=0.819168 consensus_score=146.3 fisher_strand_p_value=0.494902 frequency=1 ks_quality_p_value=0.934609 major_base=T major_cov=26/23 major_frequency=9.608e-01 minor_base=C minor_cov=2/0 new_cov=26/23 polymorphism_frequency=9.608e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=2/0 total_cov=28/24 RA 1347 . NC_000913 789580 0 C A bias_e_value=3016000 bias_p_value=0.649769 consensus_score=187.3 fisher_strand_p_value=0.29759 frequency=1 ks_quality_p_value=0.976628 major_base=A major_cov=26/41 major_frequency=9.437e-01 minor_base=C minor_cov=3/1 new_cov=26/41 polymorphism_frequency=9.437e-01 polymorphism_score=-2.1 prediction=consensus ref_cov=3/1 total_cov=29/42 RA 1348 . NC_000913 822527 0 C T bias_e_value=4641620 bias_p_value=0.999993 consensus_score=143.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996143 major_base=T major_cov=22/23 major_frequency=9.783e-01 minor_base=G minor_cov=0/1 new_cov=22/23 polymorphism_frequency=9.783e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/24 RA 1349 . NC_000913 883396 0 C T bias_e_value=3392090 bias_p_value=0.730795 consensus_score=105.0 fisher_strand_p_value=0.363636 frequency=1 ks_quality_p_value=0.998108 major_base=T major_cov=11/21 major_frequency=9.697e-01 minor_base=A minor_cov=1/0 new_cov=11/21 polymorphism_frequency=9.697e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/21 RA 1350 . NC_000913 908169 0 C T bias_e_value=4597080 bias_p_value=0.990397 consensus_score=298.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.864651 major_base=T major_cov=49/48 major_frequency=9.700e-01 minor_base=C minor_cov=1/2 new_cov=49/48 polymorphism_frequency=9.700e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=1/2 total_cov=51/51 RA 1351 . NC_000913 968252 0 G A consensus_score=257.8 frequency=1 major_base=A major_cov=40/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/39 RA 1352 . NC_000913 1054855 0 G A bias_e_value=3908410 bias_p_value=0.84203 consensus_score=236.5 fisher_strand_p_value=0.493839 frequency=1 ks_quality_p_value=0.999325 major_base=A major_cov=38/38 major_frequency=9.744e-01 minor_base=C minor_cov=2/0 new_cov=38/38 polymorphism_frequency=9.744e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=41/38 RA 1353 . NC_000913 1066699 0 C T consensus_score=111.9 frequency=1 major_base=T major_cov=21/19 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/19 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/19 RA 1354 . NC_000913 1075234 0 C T consensus_score=223.9 frequency=1 major_base=T major_cov=55/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/20 RA 1355 . NC_000913 1075528 0 C T bias_e_value=3909500 bias_p_value=0.842265 consensus_score=227.3 fisher_strand_p_value=0.493839 frequency=1 ks_quality_p_value=1 major_base=T major_cov=38/38 major_frequency=9.744e-01 minor_base=G minor_cov=0/2 new_cov=38/38 polymorphism_frequency=9.744e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/40 RA 1356 . NC_000913 1078268 0 A T bias_e_value=1244320 bias_p_value=0.268077 consensus_score=163.9 fisher_strand_p_value=0.0745398 frequency=1 ks_quality_p_value=1 major_base=T major_cov=22/33 major_frequency=9.483e-01 minor_base=A minor_cov=3/0 new_cov=22/33 polymorphism_frequency=9.483e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=3/0 total_cov=25/34 RA 1357 . NC_000913 1086153 0 C T bias_e_value=2982730 bias_p_value=0.642601 consensus_score=148.3 fisher_strand_p_value=0.431373 frequency=1 ks_quality_p_value=0.660405 major_base=T major_cov=21/29 major_frequency=9.804e-01 minor_base=C minor_cov=1/0 new_cov=21/29 polymorphism_frequency=9.804e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=22/30 RA 1358 . NC_000913 1090508 0 C T consensus_score=131.6 frequency=1 major_base=T major_cov=30/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/12 RA 1359 . NC_000913 1107209 0 C T bias_e_value=4567740 bias_p_value=0.984075 consensus_score=246.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.826928 major_base=T major_cov=41/36 major_frequency=9.747e-01 minor_base=C minor_cov=1/1 new_cov=41/36 polymorphism_frequency=9.747e-01 polymorphism_score=-2.1 prediction=consensus ref_cov=1/1 total_cov=42/37 RA 1360 . NC_000913 1109740 0 C T consensus_score=91.1 frequency=1 major_base=T major_cov=19/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/12 RA 1361 . NC_000913 1110033 0 G A bias_e_value=4641620 bias_p_value=0.999993 consensus_score=111.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996344 major_base=A major_cov=20/19 major_frequency=9.286e-01 minor_base=G minor_cov=2/1 new_cov=20/19 polymorphism_frequency=9.286e-01 polymorphism_score=-1.2 prediction=consensus ref_cov=2/1 total_cov=23/20 RA 1362 . NC_000913 1112209 0 C T bias_e_value=3313780 bias_p_value=0.713922 consensus_score=236.2 fisher_strand_p_value=0.346667 frequency=1 ks_quality_p_value=1 major_base=T major_cov=49/25 major_frequency=9.867e-01 minor_base=G minor_cov=0/1 new_cov=49/25 polymorphism_frequency=9.867e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=49/27 RA 1363 . NC_000913 1112421 0 C T consensus_score=173.6 frequency=1 major_base=T major_cov=33/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/22 RA 1364 . NC_000913 1114389 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=158.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=21/29 major_frequency=9.615e-01 minor_base=C minor_cov=1/1 new_cov=21/29 polymorphism_frequency=9.615e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/1 total_cov=22/31 RA 1365 . NC_000913 1115185 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=109.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=20/16 major_frequency=9.474e-01 minor_base=G minor_cov=1/1 new_cov=20/16 polymorphism_frequency=9.474e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=21/18 RA 1366 . NC_000913 1117707 0 G A bias_e_value=4560720 bias_p_value=0.982564 consensus_score=146.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.819166 major_base=A major_cov=24/23 major_frequency=9.792e-01 minor_base=G minor_cov=0/1 new_cov=24/23 polymorphism_frequency=9.792e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=24/24 RA 1367 . NC_000913 1120111 0 G A bias_e_value=3356250 bias_p_value=0.723073 consensus_score=189.2 fisher_strand_p_value=0.430769 frequency=1 ks_quality_p_value=0.825053 major_base=A major_cov=37/27 major_frequency=9.846e-01 minor_base=G minor_cov=0/1 new_cov=37/27 polymorphism_frequency=9.846e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=38/29 RA 1368 . NC_000913 1121547 0 G A consensus_score=92.9 frequency=1 major_base=A major_cov=17/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=17/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/12 RA 1369 . NC_000913 1121762 0 G A bias_e_value=3212000 bias_p_value=0.691994 consensus_score=142.9 fisher_strand_p_value=0.326531 frequency=1 ks_quality_p_value=1 major_base=A major_cov=33/15 major_frequency=9.796e-01 minor_base=G minor_cov=0/1 new_cov=33/15 polymorphism_frequency=9.796e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=34/16 RA 1370 . NC_000913 1123823 0 G A bias_e_value=3996620 bias_p_value=0.861033 consensus_score=129.2 fisher_strand_p_value=0.531313 frequency=1 ks_quality_p_value=0.981567 major_base=A major_cov=27/16 major_frequency=9.556e-01 minor_base=G minor_cov=2/0 new_cov=27/16 polymorphism_frequency=9.556e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=2/0 total_cov=29/16 RA 1371 . NC_000913 1123824 0 T G bias_e_value=4638380 bias_p_value=0.999294 consensus_score=139.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.96266 major_base=G major_cov=27/16 major_frequency=9.773e-01 minor_base=T minor_cov=1/0 new_cov=27/16 polymorphism_frequency=9.773e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=1/0 total_cov=29/16 RA 1372 . NC_000913 1126316 0 G A consensus_score=117.3 frequency=1 major_base=A major_cov=21/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/17 RA 1373 . NC_000913 1126518 0 C T bias_e_value=2788860 bias_p_value=0.600833 consensus_score=172.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.253086 major_base=T major_cov=27/28 major_frequency=9.821e-01 minor_base=C minor_cov=1/0 new_cov=27/28 polymorphism_frequency=9.821e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=28/28 RA 1374 . NC_000913 1127334 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=239.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=40/40 major_frequency=9.639e-01 minor_base=G minor_cov=2/1 new_cov=40/40 polymorphism_frequency=9.639e-01 polymorphism_score=NA prediction=consensus ref_cov=2/1 total_cov=42/41 RA 1375 . NC_000913 1127338 0 G A bias_e_value=4487990 bias_p_value=0.966894 consensus_score=237.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.753974 major_base=A major_cov=41/41 major_frequency=9.880e-01 minor_base=C minor_cov=1/0 new_cov=41/41 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/41 RA 1376 . NC_000913 1129796 0 G A consensus_score=172.9 frequency=1 major_base=A major_cov=31/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/26 RA 1377 . NC_000913 1130210 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=83.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=13/17 major_frequency=9.677e-01 minor_base=T minor_cov=0/1 new_cov=13/17 polymorphism_frequency=9.677e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/18 RA 1378 . NC_000913 1130803 0 C T bias_e_value=4640930 bias_p_value=0.999844 consensus_score=124.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.982371 major_base=T major_cov=16/28 major_frequency=9.565e-01 minor_base=G minor_cov=1/1 new_cov=16/28 polymorphism_frequency=9.565e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/29 RA 1379 . NC_000913 1133273 0 G A bias_e_value=2216200 bias_p_value=0.477458 consensus_score=152.3 fisher_strand_p_value=0.586808 frequency=1 ks_quality_p_value=0.295726 major_base=A major_cov=30/24 major_frequency=9.474e-01 minor_base=G minor_cov=1/2 new_cov=30/24 polymorphism_frequency=9.474e-01 polymorphism_score=-1.0 prediction=consensus ref_cov=1/2 total_cov=32/27 RA 1380 . NC_000913 1134466 0 C T bias_e_value=4118020 bias_p_value=0.887188 consensus_score=175.5 fisher_strand_p_value=0.565313 frequency=1 ks_quality_p_value=0.998247 major_base=T major_cov=23/34 major_frequency=9.500e-01 minor_base=C minor_cov=2/1 new_cov=23/34 polymorphism_frequency=9.500e-01 polymorphism_score=-3.2 prediction=consensus ref_cov=2/1 total_cov=26/35 RA 1381 . NC_000913 1138152 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=209.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/37 major_frequency=9.857e-01 minor_base=C minor_cov=0/1 new_cov=32/37 polymorphism_frequency=9.857e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=32/38 RA 1382 . NC_000913 1138533 0 C T bias_e_value=2581260 bias_p_value=0.556108 consensus_score=121.7 fisher_strand_p_value=0.221987 frequency=1 ks_quality_p_value=1 major_base=T major_cov=19/23 major_frequency=9.545e-01 minor_base=G minor_cov=2/0 new_cov=19/23 polymorphism_frequency=9.545e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/24 RA 1383 . NC_000913 1138831 0 C T bias_e_value=4638030 bias_p_value=0.99922 consensus_score=146.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.960774 major_base=T major_cov=29/20 major_frequency=9.608e-01 minor_base=C minor_cov=1/1 new_cov=29/20 polymorphism_frequency=9.608e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=1/1 total_cov=31/21 RA 1384 . NC_000913 1141865 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=248.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=50/34 major_frequency=9.545e-01 minor_base=G minor_cov=3/1 new_cov=50/34 polymorphism_frequency=9.545e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=3/1 total_cov=55/36 RA 1385 . NC_000913 1144974 0 C T consensus_score=111.6 frequency=1 major_base=T major_cov=14/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=14/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/21 RA 1386 . NC_000913 1146110 0 C T bias_e_value=3872830 bias_p_value=0.834366 consensus_score=193.6 fisher_strand_p_value=0.484848 frequency=1 ks_quality_p_value=0.995813 major_base=T major_cov=31/34 major_frequency=9.848e-01 minor_base=C minor_cov=1/0 new_cov=31/34 polymorphism_frequency=9.848e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=32/35 RA 1387 . NC_000913 1146384 0 A G bias_e_value=2050950 bias_p_value=0.441858 consensus_score=223.5 fisher_strand_p_value=0.471429 frequency=1 ks_quality_p_value=0.326388 major_base=G major_cov=37/32 major_frequency=9.857e-01 minor_base=A minor_cov=0/1 new_cov=37/32 polymorphism_frequency=9.857e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=37/33 RA 1388 . NC_000913 1147792 0 T A bias_e_value=2442460 bias_p_value=0.526205 consensus_score=170.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.202694 major_base=A major_cov=30/26 major_frequency=9.655e-01 minor_base=T minor_cov=1/1 new_cov=30/26 polymorphism_frequency=9.655e-01 polymorphism_score=-1.1 prediction=consensus ref_cov=1/1 total_cov=31/27 RA 1389 . NC_000913 1161403 0 G A consensus_score=172.3 frequency=1 major_base=A major_cov=21/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/35 RA 1390 . NC_000913 1169836 0 A G consensus_score=173.5 frequency=1 major_base=G major_cov=31/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/24 RA 1391 . NC_000913 1171417 0 G A bias_e_value=4638490 bias_p_value=0.99932 consensus_score=249.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.963343 major_base=A major_cov=45/35 major_frequency=9.877e-01 minor_base=C minor_cov=1/0 new_cov=45/35 polymorphism_frequency=9.877e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/36 RA 1392 . NC_000913 1174626 0 G A bias_e_value=4.04489 bias_p_value=8.71434e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=72.0 fisher_strand_p_value=6.32823e-08 frequency=2.667e-01 ks_quality_p_value=0.772143 major_base=G major_cov=29/4 major_frequency=7.333e-01 minor_base=A minor_cov=0/12 new_cov=0/12 polymorphism_frequency=2.667e-01 polymorphism_score=10.6 prediction=polymorphism ref_cov=29/4 total_cov=29/16 RA 1393 . NC_000913 1176602 0 C T bias_e_value=3555860 bias_p_value=0.766076 consensus_score=202.1 fisher_strand_p_value=0.415385 frequency=1 ks_quality_p_value=0.961806 major_base=T major_cov=26/38 major_frequency=9.846e-01 minor_base=C minor_cov=1/0 new_cov=26/38 polymorphism_frequency=9.846e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=27/39 RA 1394 . NC_000913 1180126 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=118.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=19/23 major_frequency=9.545e-01 minor_base=C minor_cov=1/1 new_cov=19/23 polymorphism_frequency=9.545e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=21/24 RA 1395 . NC_000913 1181995 0 G A consensus_score=131.6 frequency=1 major_base=A major_cov=29/16 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/16 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/16 RA 1396 . NC_000913 1189980 0 A G bias_e_value=3898660 bias_p_value=0.83993 consensus_score=130.0 fisher_strand_p_value=0.495017 frequency=1 ks_quality_p_value=0.990966 major_base=G major_cov=19/22 major_frequency=9.535e-01 minor_base=T minor_cov=0/2 new_cov=19/22 polymorphism_frequency=9.535e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/24 RA 1397 . NC_000913 1193141 0 G A bias_e_value=3670450 bias_p_value=0.790763 consensus_score=185.3 fisher_strand_p_value=0.430769 frequency=1 ks_quality_p_value=0.992337 major_base=A major_cov=37/27 major_frequency=9.846e-01 minor_base=G minor_cov=0/1 new_cov=37/27 polymorphism_frequency=9.846e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=37/28 RA 1398 . NC_000913 1194922 0 G A bias_e_value=3858980 bias_p_value=0.83138 consensus_score=142.6 fisher_strand_p_value=0.479167 frequency=1 ks_quality_p_value=0.999114 major_base=A major_cov=25/22 major_frequency=9.792e-01 minor_base=G minor_cov=0/1 new_cov=25/22 polymorphism_frequency=9.792e-01 polymorphism_score=-6.1 prediction=consensus ref_cov=0/1 total_cov=25/23 RA 1399 . NC_000913 1201548 0 A C bias_e_value=4060480 bias_p_value=0.874791 consensus_score=164.3 fisher_strand_p_value=0.568581 frequency=1 ks_quality_p_value=0.955616 major_base=C major_cov=23/33 major_frequency=9.492e-01 minor_base=. minor_cov=2/1 new_cov=23/33 polymorphism_frequency=9.492e-01 polymorphism_score=2.4 prediction=consensus ref_cov=1/0 total_cov=26/34 RA 1400 . NC_000913 1201550 0 C A bias_e_value=3108010 bias_p_value=0.669592 consensus_score=188.5 fisher_strand_p_value=0.307045 frequency=1 ks_quality_p_value=1 major_base=A major_cov=23/33 major_frequency=9.333e-01 minor_base=C minor_cov=3/1 new_cov=23/33 polymorphism_frequency=9.333e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=3/1 total_cov=26/34 RA 1401 . NC_000913 1227656 0 G A bias_e_value=3088920 bias_p_value=0.665478 consensus_score=78.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.303578 major_base=A major_cov=14/14 major_frequency=9.655e-01 minor_base=G minor_cov=0/1 new_cov=14/14 polymorphism_frequency=9.655e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/1 total_cov=15/15 RA 1402 . NC_000913 1234947 0 A G bias_e_value=2817070 bias_p_value=0.606911 consensus_score=143.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.257538 major_base=G major_cov=22/20 major_frequency=9.767e-01 minor_base=A minor_cov=1/0 new_cov=22/20 polymorphism_frequency=9.767e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=23/20 RA 1403 . NC_000913 1244908 0 C T consensus_score=85.8 frequency=1 major_base=T major_cov=4/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=4/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=4/25 RA 1404 . NC_000913 1252059 0 C T bias_e_value=4133750 bias_p_value=0.890578 consensus_score=91.2 fisher_strand_p_value=0.570303 frequency=1 ks_quality_p_value=1 major_base=T major_cov=21/15 major_frequency=9.231e-01 minor_base=C minor_cov=1/2 new_cov=21/15 polymorphism_frequency=9.231e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/2 total_cov=22/17 RA 1405 . NC_000913 1252663 0 C T consensus_score=134.9 frequency=1 major_base=T major_cov=27/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/17 RA 1406 . NC_000913 1253002 0 C T bias_e_value=3537120 bias_p_value=0.762038 consensus_score=146.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.395145 major_base=T major_cov=19/26 major_frequency=9.783e-01 minor_base=. minor_cov=0/1 new_cov=19/26 polymorphism_frequency=9.783e-01 polymorphism_score=-3.0 prediction=consensus ref_cov=0/0 total_cov=19/27 RA 1407 . NC_000913 1282857 0 C T bias_e_value=4363570 bias_p_value=0.94009 consensus_score=136.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.674458 major_base=T major_cov=25/25 major_frequency=9.615e-01 minor_base=C minor_cov=1/1 new_cov=25/25 polymorphism_frequency=9.615e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=1/1 total_cov=27/26 RA 1408 . NC_000913 1306736 0 T G bias_e_value=3627200 bias_p_value=0.781445 consensus_score=96.6 fisher_strand_p_value=0.416667 frequency=1 ks_quality_p_value=1 major_base=G major_cov=14/21 major_frequency=9.722e-01 minor_base=. minor_cov=1/0 new_cov=14/21 polymorphism_frequency=9.722e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/0 total_cov=15/21 RA 1409 . NC_000913 1308684 0 T C bias_e_value=2162310 bias_p_value=0.465849 consensus_score=93.6 fisher_strand_p_value=0.40625 frequency=1 ks_quality_p_value=0.41102 major_base=C major_cov=19/12 major_frequency=9.688e-01 minor_base=T minor_cov=0/1 new_cov=19/12 polymorphism_frequency=9.688e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=0/1 total_cov=19/13 RA 1410 . NC_000913 1323798 0 G A consensus_score=192.9 frequency=1 major_base=A major_cov=29/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/32 RA 1411 . NC_000913 1325054 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=131.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=18/27 major_frequency=9.574e-01 minor_base=G minor_cov=1/1 new_cov=18/27 polymorphism_frequency=9.574e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=1/1 total_cov=20/28 RA 1412 . NC_000913 1331059 0 T A bias_e_value=4641650 bias_p_value=1 consensus_score=188.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=33/25 major_frequency=9.831e-01 minor_base=G minor_cov=1/0 new_cov=33/25 polymorphism_frequency=9.831e-01 polymorphism_score=-6.5 prediction=consensus ref_cov=0/0 total_cov=35/25 RA 1413 . NC_000913 1331060 0 C T bias_e_value=3611880 bias_p_value=0.778146 consensus_score=189.7 fisher_strand_p_value=0.416667 frequency=1 ks_quality_p_value=0.991001 major_base=T major_cov=35/24 major_frequency=9.833e-01 minor_base=A minor_cov=0/1 new_cov=35/24 polymorphism_frequency=9.833e-01 polymorphism_score=-6.8 prediction=consensus ref_cov=0/0 total_cov=35/25 RA 1414 . NC_000913 1337394 0 A G consensus_score=188.7 frequency=1 major_base=G major_cov=28/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/34 RA 1415 . NC_000913 1341542 0 G A bias_e_value=2527870 bias_p_value=0.544605 consensus_score=125.7 fisher_strand_p_value=0.221987 frequency=1 ks_quality_p_value=0.965961 major_base=A major_cov=23/19 major_frequency=9.545e-01 minor_base=G minor_cov=0/2 new_cov=23/19 polymorphism_frequency=9.545e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/2 total_cov=25/21 RA 1416 . NC_000913 1358859 0 T C bias_e_value=4630450 bias_p_value=0.997586 consensus_score=136.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.931326 major_base=C major_cov=19/25 major_frequency=9.565e-01 minor_base=A minor_cov=1/1 new_cov=19/25 polymorphism_frequency=9.565e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/26 RA 1417 . NC_000913 1375737 0 G A bias_e_value=3526680 bias_p_value=0.75979 consensus_score=164.0 fisher_strand_p_value=0.396552 frequency=1 ks_quality_p_value=0.990367 major_base=A major_cov=22/35 major_frequency=9.828e-01 minor_base=C minor_cov=1/0 new_cov=22/35 polymorphism_frequency=9.828e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=25/35 RA 1418 . NC_000913 1405758 0 G A bias_e_value=3632480 bias_p_value=0.782583 consensus_score=90.3 fisher_strand_p_value=0.451613 frequency=1 ks_quality_p_value=0.925502 major_base=A major_cov=17/13 major_frequency=9.677e-01 minor_base=G minor_cov=0/1 new_cov=17/13 polymorphism_frequency=9.677e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=0/1 total_cov=17/14 RA 1419 . NC_000913 1490095 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=123.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=22/21 major_frequency=9.348e-01 minor_base=G minor_cov=1/2 new_cov=22/21 polymorphism_frequency=9.348e-01 polymorphism_score=-6.1 prediction=consensus ref_cov=1/2 total_cov=24/24 RA 1420 . NC_000913 1497385 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=65.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=12/10 major_frequency=9.167e-01 minor_base=T minor_cov=1/1 new_cov=12/10 polymorphism_frequency=9.167e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=1/1 total_cov=13/12 RA 1421 . NC_000913 1497386 0 T . bias_e_value=4586080 bias_p_value=0.988028 consensus_score=95.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.849308 major_base=. major_cov=12/12 major_frequency=9.600e-01 minor_base=T minor_cov=1/0 new_cov=12/12 polymorphism_frequency=9.600e-01 polymorphism_score=-2.9 prediction=consensus ref_cov=1/0 total_cov=13/12 RA 1422 . NC_000913 1497387 0 C A bias_e_value=4434520 bias_p_value=0.955375 consensus_score=67.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.716531 major_base=A major_cov=12/12 major_frequency=9.600e-01 minor_base=C minor_cov=1/0 new_cov=12/12 polymorphism_frequency=9.600e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=13/12 RA 1423 . NC_000913 1497388 0 T A bias_e_value=3664610 bias_p_value=0.789506 consensus_score=63.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.425993 major_base=A major_cov=12/12 major_frequency=9.600e-01 minor_base=T minor_cov=1/0 new_cov=12/12 polymorphism_frequency=9.600e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=1/0 total_cov=13/12 RA 1424 . NC_000913 1629247 0 C T bias_e_value=4426930 bias_p_value=0.953739 consensus_score=147.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.711673 major_base=T major_cov=23/25 major_frequency=9.796e-01 minor_base=C minor_cov=0/1 new_cov=23/25 polymorphism_frequency=9.796e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/1 total_cov=23/26 RA 1425 . NC_000913 1632513 0 C T consensus_score=35.4 frequency=1 major_base=T major_cov=9/5 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=9/5 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=9/5 RA 1426 . NC_000913 1643679 0 A T consensus_score=142.3 frequency=1 major_base=T major_cov=24/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/22 RA 1427 . NC_000913 1652331 0 T C bias_e_value=4641390 bias_p_value=0.999944 consensus_score=79.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.989474 major_base=C major_cov=14/13 major_frequency=9.643e-01 minor_base=T minor_cov=1/0 new_cov=14/13 polymorphism_frequency=9.643e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=1/0 total_cov=15/13 RA 1428 . NC_000913 1660102 0 C T bias_e_value=4104940 bias_p_value=0.88437 consensus_score=122.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.559435 major_base=T major_cov=23/18 major_frequency=9.535e-01 minor_base=C minor_cov=1/1 new_cov=23/18 polymorphism_frequency=9.535e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=1/1 total_cov=24/19 RA 1429 . NC_000913 1667460 0 G A bias_e_value=4539740 bias_p_value=0.978045 consensus_score=119.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.797905 major_base=A major_cov=21/18 major_frequency=9.512e-01 minor_base=G minor_cov=1/1 new_cov=21/18 polymorphism_frequency=9.512e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=1/1 total_cov=23/19 RA 1430 . NC_000913 1894839 0 T C consensus_score=139.9 frequency=1 major_base=C major_cov=26/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/17 RA 1431 . NC_000913 2040433 0 C A bias_e_value=3836480 bias_p_value=0.826533 consensus_score=211.8 fisher_strand_p_value=0.472222 frequency=1 ks_quality_p_value=1 major_base=A major_cov=33/38 major_frequency=9.861e-01 minor_base=C minor_cov=1/0 new_cov=33/38 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=34/38 RA 1432 . NC_000913 2111259 0 G . bias_e_value=2335610 bias_p_value=0.503186 consensus_score=175.0 fisher_strand_p_value=0.189463 frequency=1 ks_quality_p_value=0.995373 major_base=. major_cov=24/20 major_frequency=8.980e-01 minor_base=G minor_cov=1/4 new_cov=24/20 polymorphism_frequency=8.980e-01 polymorphism_score=13.0 prediction=consensus ref_cov=1/4 total_cov=25/25 RA 1433 . NC_000913 2173363 0 C . bias_e_value=4094350 bias_p_value=0.882088 consensus_score=160.8 fisher_strand_p_value=0.577637 frequency=1 ks_quality_p_value=0.961727 major_base=. major_cov=29/12 major_frequency=9.111e-01 minor_base=C minor_cov=2/2 new_cov=29/12 polymorphism_frequency=9.111e-01 polymorphism_score=7.7 prediction=consensus ref_cov=2/2 total_cov=31/14 RA 1434 . NC_000913 2173364 0 C . bias_e_value=2476550 bias_p_value=0.53355 consensus_score=168.3 fisher_strand_p_value=0.224454 frequency=1 ks_quality_p_value=0.923703 major_base=. major_cov=30/12 major_frequency=9.333e-01 minor_base=C minor_cov=1/2 new_cov=30/12 polymorphism_frequency=9.333e-01 polymorphism_score=4.4 prediction=consensus ref_cov=1/2 total_cov=31/14 RA 1435 . NC_000913 2173448 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=145.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999114 major_base=T major_cov=28/19 major_frequency=9.792e-01 minor_base=A minor_cov=1/0 new_cov=28/19 polymorphism_frequency=9.792e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/19 RA 1436 . NC_000913 2204395 0 T A consensus_score=76.3 frequency=1 major_base=A major_cov=17/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=17/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/9 RA 1437 . NC_000913 2222651 0 G T bias_e_value=0.266485 bias_p_value=5.74117e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=138.5 fisher_strand_p_value=2.77307e-09 frequency=2.500e-01 ks_quality_p_value=1 major_base=G major_cov=7/53 major_frequency=7.500e-01 minor_base=T minor_cov=17/3 new_cov=17/3 polymorphism_frequency=2.500e-01 polymorphism_score=12.7 prediction=polymorphism ref_cov=7/53 total_cov=24/56 RA 1438 . NC_000913 2348366 0 C A bias_e_value=2654870 bias_p_value=0.571966 consensus_score=268.1 fisher_strand_p_value=0.232692 frequency=1 ks_quality_p_value=1 major_base=A major_cov=48/37 major_frequency=9.239e-01 minor_base=C minor_cov=6/1 new_cov=48/37 polymorphism_frequency=9.239e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=6/1 total_cov=54/38 RA 1439 . NC_000913 2388753 0 G A consensus_score=88.6 frequency=1 major_base=A major_cov=14/16 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=14/16 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/16 RA 1440 . NC_000913 2405980 0 G A bias_e_value=3810340 bias_p_value=0.820901 consensus_score=111.2 fisher_strand_p_value=0.608511 frequency=1 ks_quality_p_value=0.763822 major_base=A major_cov=21/22 major_frequency=9.149e-01 minor_base=G minor_cov=3/1 new_cov=21/22 polymorphism_frequency=9.149e-01 polymorphism_score=0.4 prediction=consensus ref_cov=3/1 total_cov=25/23 RA 1441 . NC_000913 2512423 0 C T bias_e_value=4432210 bias_p_value=0.954877 consensus_score=102.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.715043 major_base=T major_cov=20/17 major_frequency=9.487e-01 minor_base=C minor_cov=1/1 new_cov=20/17 polymorphism_frequency=9.487e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=1/1 total_cov=21/19 RA 1442 . NC_000913 2577937 0 T C bias_e_value=3696880 bias_p_value=0.796458 consensus_score=133.0 fisher_strand_p_value=0.439024 frequency=1 ks_quality_p_value=0.989084 major_base=C major_cov=17/23 major_frequency=9.756e-01 minor_base=A minor_cov=1/0 new_cov=17/23 polymorphism_frequency=9.756e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/23 RA 1443 . NC_000913 2582272 0 C T bias_e_value=3228330 bias_p_value=0.695513 consensus_score=173.7 fisher_strand_p_value=0.330277 frequency=1 ks_quality_p_value=0.998218 major_base=T major_cov=29/36 major_frequency=9.420e-01 minor_base=C minor_cov=3/1 new_cov=29/36 polymorphism_frequency=9.420e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=3/1 total_cov=34/37 RA 1444 . NC_000913 2587112 0 C T bias_e_value=2695320 bias_p_value=0.58068 consensus_score=169.0 fisher_strand_p_value=0.238722 frequency=1 ks_quality_p_value=1 major_base=T major_cov=27/27 major_frequency=9.474e-01 minor_base=A minor_cov=3/0 new_cov=27/27 polymorphism_frequency=9.474e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/27 RA 1445 . NC_000913 2600978 0 C T bias_e_value=3898880 bias_p_value=0.839978 consensus_score=154.5 fisher_strand_p_value=0.490612 frequency=1 ks_quality_p_value=1 major_base=T major_cov=24/24 major_frequency=9.600e-01 minor_base=C minor_cov=0/2 new_cov=24/24 polymorphism_frequency=9.600e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=0/2 total_cov=24/27 RA 1446 . NC_000913 2613763 0 G A bias_e_value=3609630 bias_p_value=0.777661 consensus_score=252.3 fisher_strand_p_value=0.4125 frequency=1 ks_quality_p_value=0.999684 major_base=A major_cov=32/47 major_frequency=9.875e-01 minor_base=C minor_cov=1/0 new_cov=32/47 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=33/48 RA 1447 . NC_000913 2623838 0 G A bias_e_value=4641640 bias_p_value=0.999998 consensus_score=135.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998111 major_base=A major_cov=22/23 major_frequency=9.574e-01 minor_base=G minor_cov=1/1 new_cov=22/23 polymorphism_frequency=9.574e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=1/1 total_cov=23/24 RA 1448 . NC_000913 2632711 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=145.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=32/18 major_frequency=9.804e-01 minor_base=C minor_cov=1/0 new_cov=32/18 polymorphism_frequency=9.804e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/18 RA 1449 . NC_000913 2722946 0 G A bias_e_value=2557840 bias_p_value=0.551063 consensus_score=102.3 fisher_strand_p_value=0.22973 frequency=1 ks_quality_p_value=0.95178 major_base=A major_cov=16/19 major_frequency=9.459e-01 minor_base=C minor_cov=2/0 new_cov=16/19 polymorphism_frequency=9.459e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=18/22 RA 1450 . NC_000913 2774947 0 G A bias_e_value=881494 bias_p_value=0.18991 consensus_score=22.8 fisher_strand_p_value=0.505495 frequency=1 ks_quality_p_value=0.0924625 major_base=A major_cov=9/3 major_frequency=8.571e-01 minor_base=G minor_cov=1/1 new_cov=9/3 polymorphism_frequency=8.571e-01 polymorphism_score=-0.4 prediction=consensus ref_cov=1/1 total_cov=10/4 RA 1451 . NC_000913 2778119 0 C T bias_e_value=3586470 bias_p_value=0.772671 consensus_score=172.0 fisher_strand_p_value=0.40678 frequency=1 ks_quality_p_value=1 major_base=T major_cov=35/23 major_frequency=9.831e-01 minor_base=C minor_cov=0/1 new_cov=35/23 polymorphism_frequency=9.831e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=35/24 RA 1452 . NC_000913 2806897 0 C A bias_e_value=242079 bias_p_value=0.0521535 consensus_score=119.5 fisher_strand_p_value=0.00916138 frequency=1 ks_quality_p_value=1 major_base=A major_cov=4/37 major_frequency=9.111e-01 minor_base=G minor_cov=3/1 new_cov=4/37 polymorphism_frequency=9.111e-01 polymorphism_score=-3.0 prediction=consensus ref_cov=2/1 total_cov=9/40 RA 1453 . NC_000913 2814595 0 C T bias_e_value=4213040 bias_p_value=0.90766 consensus_score=163.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.602289 major_base=T major_cov=22/35 major_frequency=9.500e-01 minor_base=C minor_cov=1/2 new_cov=22/35 polymorphism_frequency=9.500e-01 polymorphism_score=0.3 prediction=consensus ref_cov=1/2 total_cov=23/39 RA 1454 . NC_000913 2818331 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=79.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=17/12 major_frequency=9.667e-01 minor_base=C minor_cov=1/0 new_cov=17/12 polymorphism_frequency=9.667e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/12 RA 1455 . NC_000913 2823616 0 G A bias_e_value=3209200 bias_p_value=0.691393 consensus_score=174.0 fisher_strand_p_value=0.61851 frequency=1 ks_quality_p_value=0.527063 major_base=A major_cov=21/38 major_frequency=9.365e-01 minor_base=G minor_cov=2/2 new_cov=21/38 polymorphism_frequency=9.365e-01 polymorphism_score=2.2 prediction=consensus ref_cov=2/2 total_cov=24/41 RA 1456 . NC_000913 2846705 0 G C bias_e_value=6.9778 bias_p_value=1.5033e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=109.4 fisher_strand_p_value=8.71175e-08 frequency=2.295e-01 ks_quality_p_value=1 major_base=G major_cov=10/37 major_frequency=7.705e-01 minor_base=C minor_cov=14/0 new_cov=14/0 polymorphism_frequency=2.295e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=10/37 total_cov=25/37 RA 1457 . NC_000913 2849941 0 G A bias_e_value=3326830 bias_p_value=0.716735 consensus_score=249.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.349331 major_base=A major_cov=39/47 major_frequency=9.348e-01 minor_base=G minor_cov=3/3 new_cov=39/47 polymorphism_frequency=9.348e-01 polymorphism_score=2.7 prediction=consensus ref_cov=3/3 total_cov=45/50 RA 1458 . NC_000913 2851821 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=182.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=27/32 major_frequency=9.833e-01 minor_base=G minor_cov=0/1 new_cov=27/32 polymorphism_frequency=9.833e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=27/33 RA 1459 . NC_000913 2867455 0 G A consensus_score=136.5 frequency=1 major_base=A major_cov=18/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/26 RA 1460 . NC_000913 2880635 0 T C bias_e_value=4298570 bias_p_value=0.926087 consensus_score=134.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.64104 major_base=C major_cov=22/22 major_frequency=9.565e-01 minor_base=T minor_cov=1/1 new_cov=22/22 polymorphism_frequency=9.565e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/1 total_cov=24/23 RA 1461 . NC_000913 2881212 0 C T bias_e_value=3369490 bias_p_value=0.725924 consensus_score=92.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.358173 major_base=T major_cov=15/18 major_frequency=9.706e-01 minor_base=C minor_cov=0/1 new_cov=15/18 polymorphism_frequency=9.706e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=0/1 total_cov=15/19 RA 1462 . NC_000913 2883115 0 G A bias_e_value=3748200 bias_p_value=0.807514 consensus_score=123.2 fisher_strand_p_value=0.487805 frequency=1 ks_quality_p_value=0.917856 major_base=A major_cov=21/19 major_frequency=9.524e-01 minor_base=G minor_cov=0/2 new_cov=21/19 polymorphism_frequency=9.524e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=0/2 total_cov=22/21 RA 1463 . NC_000913 2886731 0 T C bias_e_value=4621190 bias_p_value=0.995592 consensus_score=88.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.907584 major_base=C major_cov=15/15 major_frequency=9.091e-01 minor_base=T minor_cov=2/1 new_cov=15/15 polymorphism_frequency=9.091e-01 polymorphism_score=-1.3 prediction=consensus ref_cov=2/1 total_cov=17/17 RA 1464 . NC_000913 2890626 0 G A bias_e_value=2842320 bias_p_value=0.61235 consensus_score=276.8 fisher_strand_p_value=0.261571 frequency=1 ks_quality_p_value=1 major_base=A major_cov=51/39 major_frequency=9.677e-01 minor_base=G minor_cov=3/0 new_cov=51/39 polymorphism_frequency=9.677e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=3/0 total_cov=54/39 RA 1465 . NC_000913 2893219 0 C T bias_e_value=3450960 bias_p_value=0.743476 consensus_score=197.2 fisher_strand_p_value=0.575715 frequency=1 ks_quality_p_value=0.652544 major_base=T major_cov=38/28 major_frequency=9.565e-01 minor_base=C minor_cov=1/2 new_cov=38/28 polymorphism_frequency=9.565e-01 polymorphism_score=-0.8 prediction=consensus ref_cov=1/2 total_cov=39/32 RA 1466 . NC_000913 2893647 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=293.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999802 major_base=T major_cov=45/55 major_frequency=9.901e-01 minor_base=C minor_cov=0/1 new_cov=45/55 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=46/56 RA 1467 . NC_000913 2894839 0 C T bias_e_value=2959500 bias_p_value=0.637595 consensus_score=192.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.280916 major_base=T major_cov=36/25 major_frequency=9.839e-01 minor_base=C minor_cov=1/0 new_cov=36/25 polymorphism_frequency=9.839e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=38/26 RA 1468 . NC_000913 2916216 0 G A bias_e_value=4596610 bias_p_value=0.990296 consensus_score=196.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.863963 major_base=A major_cov=33/34 major_frequency=9.710e-01 minor_base=G minor_cov=1/1 new_cov=33/34 polymorphism_frequency=9.710e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=1/1 total_cov=35/35 RA 1469 . NC_000913 2926772 0 C A bias_e_value=3783830 bias_p_value=0.81519 consensus_score=241.5 fisher_strand_p_value=0.467532 frequency=1 ks_quality_p_value=0.978365 major_base=A major_cov=35/41 major_frequency=9.870e-01 minor_base=C minor_cov=1/0 new_cov=35/41 polymorphism_frequency=9.870e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=36/42 RA 1470 . NC_000913 2930026 0 A T bias_e_value=0.83304 bias_p_value=1.79471e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=56.3 fisher_strand_p_value=1.12391e-08 frequency=3.333e-01 ks_quality_p_value=0.818731 major_base=A major_cov=4/26 major_frequency=6.667e-01 minor_base=T minor_cov=15/0 new_cov=15/0 polymorphism_frequency=3.333e-01 polymorphism_score=16.6 prediction=polymorphism ref_cov=4/26 total_cov=19/26 RA 1471 . NC_000913 2934092 0 G A bias_e_value=4640920 bias_p_value=0.999842 consensus_score=33.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.982301 major_base=A major_cov=8/6 major_frequency=8.750e-01 minor_base=G minor_cov=1/1 new_cov=8/6 polymorphism_frequency=8.750e-01 polymorphism_score=-2.0 prediction=consensus ref_cov=1/1 total_cov=9/7 RA 1472 . NC_000913 3005153 0 A . bias_e_value=4597060 bias_p_value=0.990393 consensus_score=194.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.864629 major_base=. major_cov=19/25 major_frequency=9.778e-01 minor_base=A minor_cov=0/1 new_cov=19/25 polymorphism_frequency=9.778e-01 polymorphism_score=-1.2 prediction=consensus ref_cov=0/1 total_cov=19/26 RA 1473 . NC_000913 3025601 0 T . bias_e_value=4087520 bias_p_value=0.880617 consensus_score=152.2 fisher_strand_p_value=0.553036 frequency=1 ks_quality_p_value=1 major_base=. major_cov=14/23 major_frequency=9.250e-01 minor_base=T minor_cov=2/1 new_cov=14/23 polymorphism_frequency=9.250e-01 polymorphism_score=6.6 prediction=consensus ref_cov=2/1 total_cov=16/24 RA 1474 . NC_000913 3070858 0 T G bias_e_value=3416850 bias_p_value=0.736129 consensus_score=224.9 fisher_strand_p_value=0.472973 frequency=1 ks_quality_p_value=0.778585 major_base=G major_cov=34/39 major_frequency=9.865e-01 minor_base=T minor_cov=1/0 new_cov=34/39 polymorphism_frequency=9.865e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/0 total_cov=35/39 RA 1475 . NC_000913 3096754 0 G A consensus_score=184.8 frequency=1 major_base=A major_cov=40/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/23 RA 1476 . NC_000913 3207549 0 G . bias_e_value=3701720 bias_p_value=0.797501 consensus_score=274.6 fisher_strand_p_value=0.435484 frequency=1 ks_quality_p_value=1 major_base=. major_cov=35/26 major_frequency=9.839e-01 minor_base=C minor_cov=0/1 new_cov=35/26 polymorphism_frequency=9.839e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/0 total_cov=35/27 RA 1477 . NC_000913 3256301 0 G A bias_e_value=4631870 bias_p_value=0.997893 consensus_score=204.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.935793 major_base=A major_cov=37/28 major_frequency=9.701e-01 minor_base=G minor_cov=1/1 new_cov=37/28 polymorphism_frequency=9.701e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/1 total_cov=40/29 RA 1478 . NC_000913 3274886 0 C T bias_e_value=326.456 bias_p_value=7.03318e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=53.6 fisher_strand_p_value=5.3534e-06 frequency=2.750e-01 ks_quality_p_value=1 major_base=C major_cov=6/23 major_frequency=7.250e-01 minor_base=T minor_cov=11/0 new_cov=11/0 polymorphism_frequency=2.750e-01 polymorphism_score=10.8 prediction=polymorphism ref_cov=6/23 total_cov=17/23 RA 1479 . NC_000913 3279276 0 C G bias_e_value=2972160 bias_p_value=0.640323 consensus_score=143.9 fisher_strand_p_value=0.283071 frequency=1 ks_quality_p_value=1 major_base=G major_cov=15/30 major_frequency=9.375e-01 minor_base=T minor_cov=2/1 new_cov=15/30 polymorphism_frequency=9.375e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/1 total_cov=19/32 RA 1480 . NC_000913 3296481 0 G A bias_e_value=3861840 bias_p_value=0.831998 consensus_score=311.2 fisher_strand_p_value=0.503366 frequency=1 ks_quality_p_value=0.952748 major_base=A major_cov=55/44 major_frequency=9.802e-01 minor_base=G minor_cov=2/0 new_cov=55/44 polymorphism_frequency=9.802e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=2/0 total_cov=57/44 RA 1481 . NC_000913 3329743 0 G T bias_e_value=3866220 bias_p_value=0.83294 consensus_score=197.4 fisher_strand_p_value=0.498077 frequency=1 ks_quality_p_value=0.965446 major_base=T major_cov=29/34 major_frequency=9.692e-01 minor_base=G minor_cov=0/2 new_cov=29/34 polymorphism_frequency=9.692e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=29/36 RA 1482 . NC_000913 3364664 0 G A bias_e_value=2709150 bias_p_value=0.583661 consensus_score=233.1 fisher_strand_p_value=0.487179 frequency=1 ks_quality_p_value=0.494292 major_base=A major_cov=40/37 major_frequency=9.872e-01 minor_base=G minor_cov=0/1 new_cov=40/37 polymorphism_frequency=9.872e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=40/38 RA 1483 . NC_000913 3388041 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=159.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=26/28 major_frequency=9.818e-01 minor_base=T minor_cov=0/1 new_cov=26/28 polymorphism_frequency=9.818e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=27/29 RA 1484 . NC_000913 3411689 0 G T bias_e_value=2659990 bias_p_value=0.573069 consensus_score=116.6 fisher_strand_p_value=0.233449 frequency=1 ks_quality_p_value=1 major_base=T major_cov=20/19 major_frequency=9.286e-01 minor_base=A minor_cov=0/3 new_cov=20/19 polymorphism_frequency=9.286e-01 polymorphism_score=-3.2 prediction=consensus ref_cov=1/0 total_cov=21/22 RA 1485 . NC_000913 3433665 0 C T consensus_score=144.0 frequency=1 major_base=T major_cov=24/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/22 RA 1486 . NC_000913 3433900 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=155.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=27/25 major_frequency=9.630e-01 minor_base=G minor_cov=1/1 new_cov=27/25 polymorphism_frequency=9.630e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=30/26 RA 1487 . NC_000913 3441515 0 T G bias_e_value=2032090 bias_p_value=0.437795 consensus_score=293.1 fisher_strand_p_value=0.609175 frequency=1 ks_quality_p_value=0.249035 major_base=G major_cov=44/48 major_frequency=9.684e-01 minor_base=T minor_cov=2/1 new_cov=44/48 polymorphism_frequency=9.684e-01 polymorphism_score=0.3 prediction=consensus ref_cov=2/1 total_cov=46/49 RA 1488 . NC_000913 3474425 0 T G bias_e_value=4164190 bias_p_value=0.897136 consensus_score=340.0 fisher_strand_p_value=0.669595 frequency=1 ks_quality_p_value=0.86948 major_base=G major_cov=47/52 major_frequency=9.519e-01 minor_base=T minor_cov=3/2 new_cov=47/52 polymorphism_frequency=9.519e-01 polymorphism_score=3.2 prediction=consensus ref_cov=3/2 total_cov=50/54 RA 1489 . NC_000913 3481131 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=132.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=21/22 major_frequency=9.773e-01 minor_base=G minor_cov=0/1 new_cov=21/22 polymorphism_frequency=9.773e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=22/23 RA 1490 . NC_000913 3486386 0 G A bias_e_value=0.0024361 bias_p_value=5.24834e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=44.3 fisher_strand_p_value=2.62903e-11 frequency=3.556e-01 ks_quality_p_value=0.779472 major_base=G major_cov=28/1 major_frequency=6.444e-01 minor_base=A minor_cov=0/16 new_cov=0/16 polymorphism_frequency=3.556e-01 polymorphism_score=18.9 prediction=polymorphism ref_cov=28/1 total_cov=28/17 RA 1491 . NC_000913 3486502 0 C T consensus_score=149.6 frequency=1 major_base=T major_cov=24/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/23 RA 1492 . NC_000913 3500129 0 G A bias_e_value=3293270 bias_p_value=0.709503 consensus_score=75.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.342519 major_base=A major_cov=9/19 major_frequency=9.333e-01 minor_base=G minor_cov=1/1 new_cov=9/19 polymorphism_frequency=9.333e-01 polymorphism_score=-1.4 prediction=consensus ref_cov=1/1 total_cov=10/20 RA 1493 . NC_000913 3511466 0 C T bias_e_value=4132440 bias_p_value=0.890295 consensus_score=248.0 fisher_strand_p_value=0.570314 frequency=1 ks_quality_p_value=0.999097 major_base=T major_cov=47/33 major_frequency=9.639e-01 minor_base=C minor_cov=1/2 new_cov=47/33 polymorphism_frequency=9.639e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=1/2 total_cov=48/36 RA 1494 . NC_000913 3517171 0 G A consensus_score=202.5 frequency=1 major_base=A major_cov=30/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/37 RA 1495 . NC_000913 3555047 0 G T bias_e_value=2842040 bias_p_value=0.612292 consensus_score=107.2 fisher_strand_p_value=0.261527 frequency=1 ks_quality_p_value=1 major_base=T major_cov=22/22 major_frequency=8.462e-01 minor_base=G minor_cov=2/6 new_cov=22/22 polymorphism_frequency=8.462e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=2/6 total_cov=24/29 RA 1496 . NC_000913 3555048 0 T G bias_e_value=4241510 bias_p_value=0.913794 consensus_score=136.2 fisher_strand_p_value=0.614635 frequency=1 ks_quality_p_value=1 major_base=G major_cov=23/25 major_frequency=9.231e-01 minor_base=T minor_cov=1/3 new_cov=23/25 polymorphism_frequency=9.231e-01 polymorphism_score=-1.6 prediction=consensus ref_cov=1/3 total_cov=24/29 RA 1497 . NC_000913 3560362 0 G A bias_e_value=975011 bias_p_value=0.210057 consensus_score=182.7 fisher_strand_p_value=0.130162 frequency=1 ks_quality_p_value=0.410777 major_base=A major_cov=35/29 major_frequency=9.412e-01 minor_base=G minor_cov=4/0 new_cov=35/29 polymorphism_frequency=9.412e-01 polymorphism_score=1.8 prediction=consensus ref_cov=4/0 total_cov=41/29 RA 1498 . NC_000913 3560455 1 . G consensus_score=177.9 frequency=1 major_base=G major_cov=31/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/25 RA 1499 . NC_000913 3591074 0 G A bias_e_value=3414620 bias_p_value=0.735647 consensus_score=179.0 fisher_strand_p_value=0.586976 frequency=1 ks_quality_p_value=0.626546 major_base=A major_cov=28/35 major_frequency=9.545e-01 minor_base=G minor_cov=2/1 new_cov=28/35 polymorphism_frequency=9.545e-01 polymorphism_score=0.2 prediction=consensus ref_cov=2/1 total_cov=30/36 RA 1500 . NC_000913 3630221 0 C T bias_e_value=4431800 bias_p_value=0.954789 consensus_score=323.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.714781 major_base=T major_cov=45/61 major_frequency=9.815e-01 minor_base=C minor_cov=1/1 new_cov=45/61 polymorphism_frequency=9.815e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=1/1 total_cov=46/62 RA 1501 . NC_000913 3646970 0 G T bias_e_value=3105530 bias_p_value=0.669057 consensus_score=205.9 fisher_strand_p_value=0.650595 frequency=1 ks_quality_p_value=0.471248 major_base=T major_cov=30/39 major_frequency=9.324e-01 minor_base=G minor_cov=3/2 new_cov=30/39 polymorphism_frequency=9.324e-01 polymorphism_score=1.1 prediction=consensus ref_cov=3/2 total_cov=33/41 RA 1502 . NC_000913 3647428 0 C T bias_e_value=4545640 bias_p_value=0.979315 consensus_score=227.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.803624 major_base=T major_cov=39/37 major_frequency=9.744e-01 minor_base=C minor_cov=1/1 new_cov=39/37 polymorphism_frequency=9.744e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/1 total_cov=41/39 RA 1503 . NC_000913 3647949 0 C T bias_e_value=4577930 bias_p_value=0.986272 consensus_score=121.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.838945 major_base=T major_cov=17/23 major_frequency=9.756e-01 minor_base=C minor_cov=0/1 new_cov=17/23 polymorphism_frequency=9.756e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=17/25 RA 1504 . NC_000913 3664594 0 G A bias_e_value=4641650 bias_p_value=0.999999 consensus_score=99.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998321 major_base=A major_cov=15/19 major_frequency=9.714e-01 minor_base=G minor_cov=0/1 new_cov=15/19 polymorphism_frequency=9.714e-01 polymorphism_score=-6.3 prediction=consensus ref_cov=0/1 total_cov=16/20 RA 1505 . NC_000913 3665576 0 C T bias_e_value=3794170 bias_p_value=0.817418 consensus_score=62.6 fisher_strand_p_value=0.492754 frequency=1 ks_quality_p_value=0.934091 major_base=T major_cov=12/10 major_frequency=9.167e-01 minor_base=C minor_cov=2/0 new_cov=12/10 polymorphism_frequency=9.167e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=2/0 total_cov=15/10 RA 1506 . NC_000913 3707883 0 G A consensus_score=156.3 frequency=1 major_base=A major_cov=23/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/26 RA 1507 . NC_000913 3707947 0 C A consensus_score=144.9 frequency=1 major_base=A major_cov=22/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/24 RA 1508 . NC_000913 3719429 0 G A bias_e_value=4548020 bias_p_value=0.979829 consensus_score=91.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.805988 major_base=A major_cov=17/16 major_frequency=9.706e-01 minor_base=G minor_cov=1/0 new_cov=17/16 polymorphism_frequency=9.706e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=1/0 total_cov=18/16 RA 1509 . NC_000913 3725176 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=193.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=28/37 major_frequency=9.848e-01 minor_base=T minor_cov=0/1 new_cov=28/37 polymorphism_frequency=9.848e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=28/38 RA 1510 . NC_000913 3729440 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=135.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=24/20 major_frequency=9.565e-01 minor_base=C minor_cov=1/1 new_cov=24/20 polymorphism_frequency=9.565e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/1 total_cov=25/22 RA 1511 . NC_000913 3729441 0 C T bias_e_value=4641520 bias_p_value=0.999972 consensus_score=140.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.992464 major_base=T major_cov=24/21 major_frequency=9.574e-01 minor_base=C minor_cov=1/1 new_cov=24/21 polymorphism_frequency=9.574e-01 polymorphism_score=-2.9 prediction=consensus ref_cov=1/1 total_cov=25/22 RA 1512 . NC_000913 3730560 0 C T bias_e_value=4305060 bias_p_value=0.927484 consensus_score=216.2 fisher_strand_p_value=0.657412 frequency=1 ks_quality_p_value=0.979903 major_base=T major_cov=33/40 major_frequency=9.359e-01 minor_base=C minor_cov=3/2 new_cov=33/40 polymorphism_frequency=9.359e-01 polymorphism_score=2.5 prediction=consensus ref_cov=3/2 total_cov=36/42 RA 1513 . NC_000913 3770539 0 C T bias_e_value=4069810 bias_p_value=0.876803 consensus_score=195.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.546659 major_base=T major_cov=38/31 major_frequency=9.452e-01 minor_base=C minor_cov=2/2 new_cov=38/31 polymorphism_frequency=9.452e-01 polymorphism_score=-0.9 prediction=consensus ref_cov=2/2 total_cov=40/34 RA 1514 . NC_000913 3773173 0 G . bias_e_value=3778590 bias_p_value=0.81406 consensus_score=304.3 fisher_strand_p_value=0.455976 frequency=1 ks_quality_p_value=1 major_base=. major_cov=30/42 major_frequency=9.114e-01 minor_base=G minor_cov=4/3 new_cov=30/42 polymorphism_frequency=9.114e-01 polymorphism_score=16.1 prediction=consensus ref_cov=4/3 total_cov=34/45 RA 1515 . NC_000913 3773176 0 C T bias_e_value=3415140 bias_p_value=0.735759 consensus_score=217.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.367879 major_base=T major_cov=30/42 major_frequency=9.600e-01 minor_base=C minor_cov=1/2 new_cov=30/42 polymorphism_frequency=9.600e-01 polymorphism_score=0.4 prediction=consensus ref_cov=1/2 total_cov=34/44 RA 1516 . NC_000913 3815883 1 . C bias_e_value=4641650 bias_p_value=1 consensus_score=209.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=34/33 major_frequency=9.306e-01 minor_base=. minor_cov=3/2 new_cov=34/33 polymorphism_frequency=9.306e-01 polymorphism_score=6.7 prediction=consensus ref_cov=3/2 total_cov=37/36 RA 1517 . NC_000913 3834564 0 G A bias_e_value=4640510 bias_p_value=0.999754 consensus_score=199.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.977913 major_base=A major_cov=40/29 major_frequency=9.452e-01 minor_base=G minor_cov=2/2 new_cov=40/29 polymorphism_frequency=9.452e-01 polymorphism_score=0.9 prediction=consensus ref_cov=2/2 total_cov=42/31 RA 1518 . NC_000913 3926991 0 G A bias_e_value=4637880 bias_p_value=0.999188 consensus_score=135.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.959972 major_base=A major_cov=23/24 major_frequency=9.400e-01 minor_base=G minor_cov=1/2 new_cov=23/24 polymorphism_frequency=9.400e-01 polymorphism_score=-0.3 prediction=consensus ref_cov=1/2 total_cov=24/27 RA 1519 . NC_000913 3931779 0 T C bias_e_value=4641020 bias_p_value=0.999863 consensus_score=205.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.983484 major_base=C major_cov=22/39 major_frequency=9.683e-01 minor_base=T minor_cov=1/1 new_cov=22/39 polymorphism_frequency=9.683e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/1 total_cov=23/40 RA 1520 . NC_000913 3966530 0 C T consensus_score=167.8 frequency=1 major_base=T major_cov=32/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/20 RA 1521 . NC_000913 3966531 0 C T consensus_score=170.4 frequency=1 major_base=T major_cov=32/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/20 RA 1522 . NC_000913 3967770 0 C T bias_e_value=727748 bias_p_value=0.156786 consensus_score=82.7 fisher_strand_p_value=0.571357 frequency=1 ks_quality_p_value=0.0635951 major_base=T major_cov=13/18 major_frequency=9.118e-01 minor_base=C minor_cov=2/1 new_cov=13/18 polymorphism_frequency=9.118e-01 polymorphism_score=1.4 prediction=consensus ref_cov=2/1 total_cov=15/19 RA 1523 . NC_000913 4037496 0 A T bias_e_value=3548110 bias_p_value=0.764408 consensus_reject=FREQUENCY_CUTOFF consensus_score=45.8 fisher_strand_p_value=0.812405 frequency=4.167e-01 ks_quality_p_value=0.489542 major_base=A major_cov=24/18 major_frequency=5.833e-01 minor_base=T minor_cov=16/14 new_cov=16/14 polymorphism_frequency=4.167e-01 polymorphism_score=88.3 prediction=polymorphism ref_cov=24/18 total_cov=40/32 RA 1524 . NC_000913 4133252 0 C T bias_e_value=4295360 bias_p_value=0.925394 consensus_score=70.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.639486 major_base=T major_cov=5/22 major_frequency=9.643e-01 minor_base=C minor_cov=0/1 new_cov=5/22 polymorphism_frequency=9.643e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=5/23 RA 1525 . NC_000913 4193996 0 T G bias_e_value=4253280 bias_p_value=0.91633 consensus_score=268.9 fisher_strand_p_value=0.669347 frequency=1 ks_quality_p_value=0.926113 major_base=G major_cov=43/39 major_frequency=9.425e-01 minor_base=T minor_cov=2/3 new_cov=43/39 polymorphism_frequency=9.425e-01 polymorphism_score=0.6 prediction=consensus ref_cov=2/3 total_cov=45/42 RA 1526 . NC_000913 4215670 0 G T bias_e_value=2980000 bias_p_value=0.642012 consensus_score=170.2 fisher_strand_p_value=0.588053 frequency=1 ks_quality_p_value=0.483651 major_base=T major_cov=31/25 major_frequency=9.492e-01 minor_base=G minor_cov=1/2 new_cov=31/25 polymorphism_frequency=9.492e-01 polymorphism_score=1.1 prediction=consensus ref_cov=1/2 total_cov=33/27 RA 1527 . NC_000913 4223638 0 T C consensus_score=106.3 frequency=1 major_base=C major_cov=2/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=2/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=2/33 RA 1528 . NC_000913 4238232 0 C T bias_e_value=1033000 bias_p_value=0.222551 consensus_score=127.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.0577918 major_base=T major_cov=30/20 major_frequency=9.091e-01 minor_base=C minor_cov=3/2 new_cov=30/20 polymorphism_frequency=9.091e-01 polymorphism_score=5.5 prediction=consensus ref_cov=3/2 total_cov=34/22 RA 1529 . NC_000913 4272711 0 C T bias_e_value=3964410 bias_p_value=0.854094 consensus_score=295.0 fisher_strand_p_value=0.513155 frequency=1 ks_quality_p_value=0.995846 major_base=T major_cov=38/54 major_frequency=9.787e-01 minor_base=G minor_cov=0/2 new_cov=38/54 polymorphism_frequency=9.787e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=38/57 RA 1530 . NC_000913 4275204 0 C T bias_e_value=4640670 bias_p_value=0.999789 consensus_score=81.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.979523 major_base=T major_cov=15/14 major_frequency=9.667e-01 minor_base=A minor_cov=1/0 new_cov=15/14 polymorphism_frequency=9.667e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/14 RA 1531 . NC_000913 4276212 0 C T bias_e_value=4594370 bias_p_value=0.989814 consensus_score=87.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.860708 major_base=T major_cov=17/13 major_frequency=9.375e-01 minor_base=C minor_cov=1/1 new_cov=17/13 polymorphism_frequency=9.375e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/1 total_cov=18/14 RA 1532 . NC_000913 4276422 0 C T bias_e_value=4626750 bias_p_value=0.99679 consensus_score=99.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.920947 major_base=T major_cov=19/15 major_frequency=9.714e-01 minor_base=C minor_cov=1/0 new_cov=19/15 polymorphism_frequency=9.714e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=1/0 total_cov=20/15 RA 1533 . NC_000913 4281093 0 G A bias_e_value=3548780 bias_p_value=0.764551 consensus_score=253.5 fisher_strand_p_value=0.596731 frequency=1 ks_quality_p_value=0.666734 major_base=A major_cov=47/40 major_frequency=9.667e-01 minor_base=G minor_cov=1/2 new_cov=47/40 polymorphism_frequency=9.667e-01 polymorphism_score=-1.5 prediction=consensus ref_cov=1/2 total_cov=50/44 RA 1534 . NC_000913 4283043 0 G A consensus_score=54.6 frequency=1 major_base=A major_cov=10/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=10/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=10/9 RA 1535 . NC_000913 4283465 0 G A bias_e_value=4473660 bias_p_value=0.963808 consensus_score=103.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.743313 major_base=A major_cov=29/8 major_frequency=9.024e-01 minor_base=G minor_cov=3/1 new_cov=29/8 polymorphism_frequency=9.024e-01 polymorphism_score=-1.3 prediction=consensus ref_cov=3/1 total_cov=34/10 RA 1536 . NC_000913 4284646 0 G A bias_e_value=2449420 bias_p_value=0.527704 consensus_score=169.1 fisher_strand_p_value=0.203634 frequency=1 ks_quality_p_value=1 major_base=A major_cov=24/31 major_frequency=9.649e-01 minor_base=C minor_cov=2/0 new_cov=24/31 polymorphism_frequency=9.649e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/31 RA 1537 . NC_000913 4285238 0 G A bias_e_value=1694140 bias_p_value=0.364987 consensus_score=191.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.115585 major_base=A major_cov=33/30 major_frequency=9.692e-01 minor_base=G minor_cov=1/1 new_cov=33/30 polymorphism_frequency=9.692e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=1/1 total_cov=35/31 RA 1538 . NC_000913 4288385 0 G A bias_e_value=3419570 bias_p_value=0.736714 consensus_score=193.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.368836 major_base=A major_cov=34/32 major_frequency=9.429e-01 minor_base=G minor_cov=2/2 new_cov=34/32 polymorphism_frequency=9.429e-01 polymorphism_score=2.4 prediction=consensus ref_cov=2/2 total_cov=38/34 RA 1539 . NC_000913 4296380 1 . C bias_e_value=3150630 bias_p_value=0.678774 consensus_score=106.7 fisher_strand_p_value=0.410256 frequency=1 ks_quality_p_value=0.767584 major_base=C major_cov=15/23 major_frequency=9.744e-01 minor_base=T minor_cov=1/0 new_cov=15/23 polymorphism_frequency=9.744e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/0 total_cov=17/23 RA 1540 . NC_000913 4296380 2 . G bias_e_value=4641350 bias_p_value=0.999934 consensus_score=104.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.988528 major_base=G major_cov=17/22 major_frequency=9.750e-01 minor_base=T minor_cov=0/1 new_cov=17/22 polymorphism_frequency=9.750e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/23 RA 1541 . NC_000913 4296428 0 G A bias_e_value=2656660 bias_p_value=0.572353 consensus_score=134.1 fisher_strand_p_value=0.25762 frequency=1 ks_quality_p_value=0.904269 major_base=A major_cov=22/28 major_frequency=9.434e-01 minor_base=G minor_cov=0/3 new_cov=22/28 polymorphism_frequency=9.434e-01 polymorphism_score=-3.1 prediction=consensus ref_cov=0/3 total_cov=22/31 RA 1542 . NC_000913 4297782 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=136.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=28/22 major_frequency=9.615e-01 minor_base=C minor_cov=1/1 new_cov=28/22 polymorphism_frequency=9.615e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/25 RA 1543 . NC_000913 4298401 0 G A bias_e_value=4641600 bias_p_value=0.999988 consensus_score=324.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.995158 major_base=A major_cov=52/49 major_frequency=9.902e-01 minor_base=C minor_cov=1/0 new_cov=52/49 polymorphism_frequency=9.902e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/49 RA 1544 . NC_000913 4306035 0 C T bias_e_value=3009910 bias_p_value=0.648457 consensus_score=196.3 fisher_strand_p_value=0.315217 frequency=1 ks_quality_p_value=0.918651 major_base=T major_cov=38/28 major_frequency=9.429e-01 minor_base=C minor_cov=1/3 new_cov=38/28 polymorphism_frequency=9.429e-01 polymorphism_score=0.7 prediction=consensus ref_cov=1/3 total_cov=39/34 RA 1545 . NC_000913 4306960 0 G A consensus_score=203.8 frequency=1 major_base=A major_cov=41/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/23 RA 1546 . NC_000913 4307151 0 G A bias_e_value=4627640 bias_p_value=0.996981 consensus_score=196.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.923311 major_base=A major_cov=34/31 major_frequency=9.559e-01 minor_base=G minor_cov=2/1 new_cov=34/31 polymorphism_frequency=9.559e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=2/1 total_cov=37/32 RA 1547 . NC_000913 4318215 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=215.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=46/27 major_frequency=9.605e-01 minor_base=G minor_cov=2/1 new_cov=46/27 polymorphism_frequency=9.605e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=2/1 total_cov=48/29 RA 1548 . NC_000913 4320007 0 G A bias_e_value=3803810 bias_p_value=0.819495 consensus_score=312.4 fisher_strand_p_value=0.462963 frequency=1 ks_quality_p_value=1 major_base=A major_cov=49/58 major_frequency=9.907e-01 minor_base=C minor_cov=1/0 new_cov=49/58 polymorphism_frequency=9.907e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=51/58 RA 1549 . NC_000913 4320344 0 G A bias_e_value=4327810 bias_p_value=0.932386 consensus_score=260.4 fisher_strand_p_value=0.655573 frequency=1 ks_quality_p_value=1 major_base=A major_cov=40/50 major_frequency=9.474e-01 minor_base=C minor_cov=3/2 new_cov=40/50 polymorphism_frequency=9.474e-01 polymorphism_score=NA prediction=consensus ref_cov=3/2 total_cov=47/55 RA 1550 . NC_000913 4320416 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=283.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=48/47 major_frequency=9.500e-01 minor_base=G minor_cov=2/3 new_cov=48/47 polymorphism_frequency=9.500e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=2/3 total_cov=52/51 RA 1551 . NC_000913 4320543 0 G A bias_e_value=1770000 bias_p_value=0.381329 consensus_score=470.1 fisher_strand_p_value=0.123319 frequency=1 ks_quality_p_value=0.999635 major_base=A major_cov=76/70 major_frequency=9.733e-01 minor_base=C minor_cov=4/0 new_cov=76/70 polymorphism_frequency=9.733e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=80/70 RA 1552 . NC_000913 4321488 0 G A bias_e_value=963671 bias_p_value=0.207614 consensus_score=323.1 fisher_strand_p_value=0.0526356 frequency=1 ks_quality_p_value=1 major_base=A major_cov=49/56 major_frequency=9.633e-01 minor_base=C minor_cov=4/0 new_cov=49/56 polymorphism_frequency=9.633e-01 polymorphism_score=NA prediction=consensus ref_cov=1/2 total_cov=54/58 RA 1553 . NC_000913 4321603 0 T C bias_e_value=4638730 bias_p_value=0.999371 consensus_score=271.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.964731 major_base=C major_cov=43/46 major_frequency=9.674e-01 minor_base=T minor_cov=1/2 new_cov=43/46 polymorphism_frequency=9.674e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/2 total_cov=44/48 RA 1554 . NC_000913 4322786 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=348.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=65/52 major_frequency=9.669e-01 minor_base=G minor_cov=2/2 new_cov=65/52 polymorphism_frequency=9.669e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=2/2 total_cov=69/54 RA 1555 . NC_000913 4325644 0 C T consensus_score=251.1 frequency=1 major_base=T major_cov=45/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/34 RA 1556 . NC_000913 4328622 0 T C bias_e_value=3778680 bias_p_value=0.814082 consensus_score=222.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.456003 major_base=C major_cov=40/38 major_frequency=9.750e-01 minor_base=T minor_cov=1/1 new_cov=40/38 polymorphism_frequency=9.750e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=1/1 total_cov=42/40 RA 1557 . NC_000913 4331890 0 C T bias_e_value=4604310 bias_p_value=0.991954 consensus_score=133.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.87586 major_base=T major_cov=12/38 major_frequency=9.804e-01 minor_base=C minor_cov=0/1 new_cov=12/38 polymorphism_frequency=9.804e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=0/1 total_cov=12/40 RA 1558 . NC_000913 4336901 0 T A bias_e_value=171.433 bias_p_value=3.69335e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=68.3 fisher_strand_p_value=2.88829e-06 frequency=3.261e-01 ks_quality_p_value=0.924377 major_base=T major_cov=22/9 major_frequency=6.739e-01 minor_base=A minor_cov=0/15 new_cov=0/15 polymorphism_frequency=3.261e-01 polymorphism_score=14.6 prediction=polymorphism ref_cov=22/9 total_cov=22/25 RA 1559 . NC_000913 4340953 0 C T bias_e_value=3731990 bias_p_value=0.804022 consensus_score=156.1 fisher_strand_p_value=0.502262 frequency=1 ks_quality_p_value=0.882836 major_base=T major_cov=28/22 major_frequency=9.615e-01 minor_base=C minor_cov=2/0 new_cov=28/22 polymorphism_frequency=9.615e-01 polymorphism_score=-2.0 prediction=consensus ref_cov=2/0 total_cov=30/23 RA 1560 . NC_000913 4344501 0 G A bias_e_value=4641320 bias_p_value=0.999928 consensus_score=150.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.988006 major_base=A major_cov=24/27 major_frequency=9.808e-01 minor_base=T minor_cov=0/1 new_cov=24/27 polymorphism_frequency=9.808e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/28 RA 1561 . NC_000913 4344935 0 G A consensus_score=203.7 frequency=1 major_base=A major_cov=34/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/29 RA 1562 . NC_000913 4363184 0 C T bias_e_value=4615030 bias_p_value=0.994264 consensus_score=207.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.89482 major_base=T major_cov=42/29 major_frequency=9.726e-01 minor_base=C minor_cov=1/1 new_cov=42/29 polymorphism_frequency=9.726e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/1 total_cov=43/30 RA 1563 . NC_000913 4379638 0 G A bias_e_value=3.49443 bias_p_value=7.52842e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=90.4 fisher_strand_p_value=4.37261e-08 frequency=2.083e-01 ks_quality_p_value=0.957088 major_base=G major_cov=35/3 major_frequency=7.917e-01 minor_base=A minor_cov=0/10 new_cov=0/10 polymorphism_frequency=2.083e-01 polymorphism_score=10.1 prediction=polymorphism ref_cov=35/3 total_cov=35/13 RA 1564 . NC_000913 4390331 0 C T consensus_score=147.4 frequency=1 major_base=T major_cov=21/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/25 RA 1565 . NC_000913 4402938 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=230.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=38/43 major_frequency=9.759e-01 minor_base=C minor_cov=1/1 new_cov=38/43 polymorphism_frequency=9.759e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=41/44 RA 1566 . NC_000913 4410859 0 C T bias_e_value=3325250 bias_p_value=0.716394 consensus_score=154.7 fisher_strand_p_value=0.620053 frequency=1 ks_quality_p_value=0.562867 major_base=T major_cov=29/25 major_frequency=9.310e-01 minor_base=C minor_cov=3/1 new_cov=29/25 polymorphism_frequency=9.310e-01 polymorphism_score=3.2 prediction=consensus ref_cov=3/1 total_cov=33/26 RA 1567 . NC_000913 4414192 0 G A consensus_score=217.1 frequency=1 major_base=A major_cov=33/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/35 RA 1568 . NC_000913 4430584 0 C T bias_e_value=2423240 bias_p_value=0.522065 consensus_score=176.8 fisher_strand_p_value=0.366259 frequency=1 ks_quality_p_value=0.546363 major_base=T major_cov=32/29 major_frequency=9.242e-01 minor_base=C minor_cov=4/1 new_cov=32/29 polymorphism_frequency=9.242e-01 polymorphism_score=3.6 prediction=consensus ref_cov=4/1 total_cov=36/30 RA 1569 . NC_000913 4431220 0 C T bias_e_value=2714330 bias_p_value=0.584776 consensus_score=152.6 fisher_strand_p_value=0.48 frequency=1 ks_quality_p_value=0.503319 major_base=T major_cov=23/26 major_frequency=9.800e-01 minor_base=C minor_cov=1/0 new_cov=23/26 polymorphism_frequency=9.800e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=25/26 RA 1570 . NC_000913 4437890 0 C T bias_e_value=4541870 bias_p_value=0.978502 consensus_score=72.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.799943 major_base=T major_cov=14/14 major_frequency=8.750e-01 minor_base=C minor_cov=2/2 new_cov=14/14 polymorphism_frequency=8.750e-01 polymorphism_score=2.3 prediction=consensus ref_cov=2/2 total_cov=16/17 RA 1571 . NC_000913 4439578 0 G A consensus_score=137.1 frequency=1 major_base=A major_cov=23/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/21 RA 1572 . NC_000913 4440768 0 G A bias_e_value=4556730 bias_p_value=0.981704 consensus_score=259.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.81491 major_base=A major_cov=38/45 major_frequency=9.765e-01 minor_base=G minor_cov=1/1 new_cov=38/45 polymorphism_frequency=9.765e-01 polymorphism_score=-2.9 prediction=consensus ref_cov=1/1 total_cov=40/47 RA 1573 . NC_000913 4445315 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=213.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=35/37 major_frequency=9.474e-01 minor_base=G minor_cov=2/2 new_cov=35/37 polymorphism_frequency=9.474e-01 polymorphism_score=NA prediction=consensus ref_cov=2/1 total_cov=39/40 RA 1574 . NC_000913 4445924 0 C T bias_e_value=4087930 bias_p_value=0.880705 consensus_score=265.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.553185 major_base=T major_cov=46/43 major_frequency=9.570e-01 minor_base=C minor_cov=2/2 new_cov=46/43 polymorphism_frequency=9.570e-01 polymorphism_score=1.8 prediction=consensus ref_cov=2/2 total_cov=48/45 RA 1575 . NC_000913 4446482 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=228.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999325 major_base=T major_cov=36/40 major_frequency=9.744e-01 minor_base=C minor_cov=1/1 new_cov=36/40 polymorphism_frequency=9.744e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/1 total_cov=38/42 RA 1576 . NC_000913 4448304 0 C T bias_e_value=2778120 bias_p_value=0.59852 consensus_score=87.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.251407 major_base=T major_cov=16/16 major_frequency=9.697e-01 minor_base=C minor_cov=0/1 new_cov=16/16 polymorphism_frequency=9.697e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=0/1 total_cov=17/17 RA 1577 . NC_000913 4463952 0 G A bias_e_value=3770430 bias_p_value=0.812303 consensus_score=274.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.453744 major_base=A major_cov=44/45 major_frequency=9.780e-01 minor_base=G minor_cov=1/1 new_cov=44/45 polymorphism_frequency=9.780e-01 polymorphism_score=-2.8 prediction=consensus ref_cov=1/1 total_cov=45/46 RA 1578 . NC_000913 4473900 0 C T bias_e_value=4640760 bias_p_value=0.999808 consensus_score=222.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.980475 major_base=T major_cov=33/37 major_frequency=9.859e-01 minor_base=G minor_cov=0/1 new_cov=33/37 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/38 RA 1579 . NC_000913 4475493 0 T C consensus_score=106.8 frequency=1 major_base=C major_cov=15/19 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/19 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/19 RA 1580 . NC_000913 4476605 0 G A bias_e_value=1929010 bias_p_value=0.415586 consensus_score=45.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.140168 major_base=A major_cov=8/11 major_frequency=9.048e-01 minor_base=G minor_cov=1/1 new_cov=8/11 polymorphism_frequency=9.048e-01 polymorphism_score=-0.8 prediction=consensus ref_cov=1/1 total_cov=9/12 RA 1581 . NC_000913 4489016 0 C T bias_e_value=4639020 bias_p_value=0.999432 consensus_score=205.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.966484 major_base=T major_cov=30/34 major_frequency=9.697e-01 minor_base=C minor_cov=1/1 new_cov=30/34 polymorphism_frequency=9.697e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=1/1 total_cov=31/36 RA 1582 . NC_000913 4492470 0 C A bias_e_value=3924040 bias_p_value=0.845396 consensus_score=150.8 fisher_strand_p_value=0.49899 frequency=1 ks_quality_p_value=0.998629 major_base=A major_cov=29/24 major_frequency=9.636e-01 minor_base=G minor_cov=2/0 new_cov=29/24 polymorphism_frequency=9.636e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=0/0 total_cov=31/24 RA 1583 . NC_000913 4492583 1 . G bias_e_value=4616050 bias_p_value=0.994484 consensus_score=90.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.896821 major_base=G major_cov=21/13 major_frequency=8.718e-01 minor_base=. minor_cov=3/2 new_cov=21/13 polymorphism_frequency=8.718e-01 polymorphism_score=7.7 prediction=consensus ref_cov=3/2 total_cov=24/16 RA 1584 . NC_000913 4495194 0 A T bias_e_value=4641540 bias_p_value=0.999977 consensus_score=214.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.993203 major_base=T major_cov=37/31 major_frequency=9.855e-01 minor_base=G minor_cov=1/0 new_cov=37/31 polymorphism_frequency=9.855e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/31 RA 1585 . NC_000913 4496168 0 G T bias_e_value=3120090 bias_p_value=0.672194 consensus_score=209.5 fisher_strand_p_value=0.486111 frequency=1 ks_quality_p_value=0.636183 major_base=T major_cov=34/37 major_frequency=9.861e-01 minor_base=G minor_cov=1/0 new_cov=34/37 polymorphism_frequency=9.861e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/0 total_cov=35/38 RA 1586 . NC_000913 4496885 0 G A bias_e_value=3218050 bias_p_value=0.693299 consensus_score=187.2 fisher_strand_p_value=0.327699 frequency=1 ks_quality_p_value=1 major_base=A major_cov=27/34 major_frequency=9.385e-01 minor_base=G minor_cov=3/1 new_cov=27/34 polymorphism_frequency=9.385e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=3/1 total_cov=30/35 RA 1587 . NC_000913 4507424 0 G C bias_e_value=4637350 bias_p_value=0.999074 consensus_score=218.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.957268 major_base=C major_cov=30/36 major_frequency=9.706e-01 minor_base=G minor_cov=1/1 new_cov=30/36 polymorphism_frequency=9.706e-01 polymorphism_score=-0.2 prediction=consensus ref_cov=1/1 total_cov=31/37 RA 1588 . NC_000913 4509416 0 T C bias_e_value=3313290 bias_p_value=0.713816 consensus_reject=FREQUENCY_CUTOFF consensus_score=56.4 fisher_strand_p_value=0.486474 frequency=4.143e-01 ks_quality_p_value=0.712405 major_base=T major_cov=35/47 major_frequency=5.857e-01 minor_base=C minor_cov=21/37 new_cov=21/37 polymorphism_frequency=4.143e-01 polymorphism_score=146.5 prediction=polymorphism ref_cov=35/47 total_cov=56/84 RA 1589 . NC_000913 4509428 0 A G bias_e_value=3152610 bias_p_value=0.6792 consensus_reject=FREQUENCY_CUTOFF consensus_score=60.5 fisher_strand_p_value=0.490957 frequency=4.266e-01 ks_quality_p_value=0.642164 major_base=A major_cov=35/47 major_frequency=5.734e-01 minor_base=G minor_cov=22/39 new_cov=22/39 polymorphism_frequency=4.266e-01 polymorphism_score=149.6 prediction=polymorphism ref_cov=35/47 total_cov=57/88 RA 1590 . NC_000913 4509463 0 T G bias_e_value=3865710 bias_p_value=0.832831 consensus_reject=FREQUENCY_CUTOFF consensus_score=79.2 fisher_strand_p_value=0.487408 frequency=4.214e-01 ks_quality_p_value=0.986273 major_base=T major_cov=36/45 major_frequency=5.786e-01 minor_base=G minor_cov=22/37 new_cov=22/37 polymorphism_frequency=4.214e-01 polymorphism_score=117.9 prediction=polymorphism ref_cov=36/45 total_cov=60/82 RA 1591 . NC_000913 4509478 1 . C bias_e_value=3951360 bias_p_value=0.851284 consensus_reject=FREQUENCY_CUTOFF consensus_score=124.8 fisher_strand_p_value=0.599141 frequency=3.681e-01 ks_quality_p_value=0.845982 major_base=. major_cov=37/54 major_frequency=6.319e-01 minor_base=C minor_cov=19/34 new_cov=19/34 polymorphism_frequency=3.681e-01 polymorphism_score=250.1 prediction=polymorphism ref_cov=37/54 total_cov=56/88 RA 1592 . NC_000913 4509487 0 A G bias_e_value=4626840 bias_p_value=0.996809 consensus_reject=FREQUENCY_CUTOFF consensus_score=62.2 fisher_strand_p_value=1 frequency=4.236e-01 ks_quality_p_value=0.921178 major_base=A major_cov=33/50 major_frequency=5.764e-01 minor_base=G minor_cov=25/36 new_cov=25/36 polymorphism_frequency=4.236e-01 polymorphism_score=159.0 prediction=polymorphism ref_cov=33/50 total_cov=58/86 RA 1593 . NC_000913 4509524 0 C T bias_e_value=3989150 bias_p_value=0.859424 consensus_reject=FREQUENCY_CUTOFF consensus_score=130.7 fisher_strand_p_value=1 frequency=3.784e-01 ks_quality_p_value=0.519057 major_base=C major_cov=39/53 major_frequency=6.216e-01 minor_base=T minor_cov=23/33 new_cov=23/33 polymorphism_frequency=3.784e-01 polymorphism_score=124.9 prediction=polymorphism ref_cov=39/53 total_cov=63/86 RA 1594 . NC_000913 4509537 0 G A bias_e_value=3761530 bias_p_value=0.810387 consensus_reject=FREQUENCY_CUTOFF consensus_score=108.2 fisher_strand_p_value=0.860804 frequency=3.841e-01 ks_quality_p_value=0.52431 major_base=G major_cov=37/48 major_frequency=6.159e-01 minor_base=A minor_cov=22/31 new_cov=22/31 polymorphism_frequency=3.841e-01 polymorphism_score=121.3 prediction=polymorphism ref_cov=37/48 total_cov=60/80 RA 1595 . NC_000913 4509544 0 G A bias_e_value=4595670 bias_p_value=0.990093 consensus_reject=FREQUENCY_CUTOFF consensus_score=111.3 fisher_strand_p_value=0.862579 frequency=3.972e-01 ks_quality_p_value=1 major_base=G major_cov=36/49 major_frequency=6.028e-01 minor_base=A minor_cov=25/31 new_cov=25/31 polymorphism_frequency=3.972e-01 polymorphism_score=124.4 prediction=polymorphism ref_cov=36/49 total_cov=61/81 RA 1596 . NC_000913 4509556 0 T C bias_e_value=4638500 bias_p_value=0.999321 consensus_reject=FREQUENCY_CUTOFF consensus_score=91.8 fisher_strand_p_value=1 frequency=3.971e-01 ks_quality_p_value=0.963372 major_base=T major_cov=38/44 major_frequency=6.029e-01 minor_base=C minor_cov=25/29 new_cov=25/29 polymorphism_frequency=3.971e-01 polymorphism_score=120.4 prediction=polymorphism ref_cov=38/44 total_cov=63/74 RA 1597 . NC_000913 4509562 0 T C bias_e_value=4641610 bias_p_value=0.999991 consensus_reject=FREQUENCY_CUTOFF consensus_score=82.0 fisher_strand_p_value=1 frequency=4.077e-01 ks_quality_p_value=0.995652 major_base=T major_cov=35/42 major_frequency=5.923e-01 minor_base=C minor_cov=24/29 new_cov=24/29 polymorphism_frequency=4.077e-01 polymorphism_score=119.4 prediction=polymorphism ref_cov=35/42 total_cov=62/72 RA 1598 . NC_000913 4509586 0 A C bias_e_value=3332230 bias_p_value=0.717898 consensus_reject=FREQUENCY_CUTOFF consensus_score=28.8 fisher_strand_p_value=1 frequency=5.440e-01 ks_quality_p_value=0.350439 major_base=C major_cov=33/35 major_frequency=5.440e-01 minor_base=A minor_cov=28/29 new_cov=33/35 polymorphism_frequency=5.440e-01 polymorphism_score=148.0 prediction=polymorphism ref_cov=28/29 total_cov=61/65 RA 1599 . NC_000913 4509592 0 G A bias_e_value=4515160 bias_p_value=0.972749 consensus_reject=FREQUENCY_CUTOFF consensus_score=43.0 fisher_strand_p_value=0.855516 frequency=4.426e-01 ks_quality_p_value=0.90684 major_base=G major_cov=32/36 major_frequency=5.574e-01 minor_base=A minor_cov=27/27 new_cov=27/27 polymorphism_frequency=4.426e-01 polymorphism_score=129.7 prediction=polymorphism ref_cov=32/36 total_cov=59/63 RA 1600 . NC_000913 4509623 0 G A bias_e_value=4408740 bias_p_value=0.949821 consensus_reject=FREQUENCY_CUTOFF consensus_score=62.9 fisher_strand_p_value=0.700417 frequency=4.128e-01 ks_quality_p_value=1 major_base=G major_cov=30/34 major_frequency=5.872e-01 minor_base=A minor_cov=23/22 new_cov=23/22 polymorphism_frequency=4.128e-01 polymorphism_score=101.5 prediction=polymorphism ref_cov=30/34 total_cov=53/56 RA 1601 . NC_000913 4509628 0 A G bias_e_value=3710950 bias_p_value=0.79949 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.3 fisher_strand_p_value=0.545678 frequency=3.883e-01 ks_quality_p_value=0.802461 major_base=A major_cov=30/33 major_frequency=6.117e-01 minor_base=G minor_cov=22/18 new_cov=22/18 polymorphism_frequency=3.883e-01 polymorphism_score=95.0 prediction=polymorphism ref_cov=30/33 total_cov=52/51 RA 1602 . NC_000913 4509630 0 C T bias_e_value=2416960 bias_p_value=0.520711 consensus_reject=FREQUENCY_CUTOFF consensus_score=72.6 fisher_strand_p_value=0.678988 frequency=3.700e-01 ks_quality_p_value=0.29348 major_base=C major_cov=30/33 major_frequency=6.300e-01 minor_base=T minor_cov=20/17 new_cov=20/17 polymorphism_frequency=3.700e-01 polymorphism_score=84.8 prediction=polymorphism ref_cov=30/33 total_cov=52/51 RA 1603 . NC_000913 4509632 0 A G bias_e_value=1348350 bias_p_value=0.290489 consensus_reject=FREQUENCY_CUTOFF consensus_score=59.6 fisher_strand_p_value=0.418236 frequency=3.900e-01 ks_quality_p_value=0.199326 major_base=A major_cov=29/32 major_frequency=6.100e-01 minor_base=G minor_cov=22/17 new_cov=22/17 polymorphism_frequency=3.900e-01 polymorphism_score=89.5 prediction=polymorphism ref_cov=29/32 total_cov=52/52 RA 1604 . NC_000913 4509633 0 C T bias_e_value=3506380 bias_p_value=0.755415 consensus_reject=FREQUENCY_CUTOFF consensus_score=78.6 fisher_strand_p_value=0.539257 frequency=3.725e-01 ks_quality_p_value=0.719658 major_base=C major_cov=30/34 major_frequency=6.275e-01 minor_base=T minor_cov=21/17 new_cov=21/17 polymorphism_frequency=3.725e-01 polymorphism_score=85.1 prediction=polymorphism ref_cov=30/34 total_cov=52/52 RA 1605 . NC_000913 4509637 0 C T bias_e_value=2100910 bias_p_value=0.452622 consensus_reject=FREQUENCY_CUTOFF consensus_score=66.0 fisher_strand_p_value=0.532615 frequency=3.776e-01 ks_quality_p_value=0.299799 major_base=C major_cov=28/33 major_frequency=6.224e-01 minor_base=T minor_cov=20/17 new_cov=20/17 polymorphism_frequency=3.776e-01 polymorphism_score=89.7 prediction=polymorphism ref_cov=28/33 total_cov=52/52 RA 1606 . NC_000913 4509640 0 T C bias_e_value=3373990 bias_p_value=0.726894 consensus_reject=FREQUENCY_CUTOFF consensus_score=82.5 fisher_strand_p_value=0.418027 frequency=3.689e-01 ks_quality_p_value=0.859084 major_base=T major_cov=30/35 major_frequency=6.311e-01 minor_base=C minor_cov=21/17 new_cov=21/17 polymorphism_frequency=3.689e-01 polymorphism_score=85.6 prediction=polymorphism ref_cov=30/35 total_cov=52/53 RA 1607 . NC_000913 4509655 0 T G bias_e_value=3722370 bias_p_value=0.801949 consensus_reject=FREQUENCY_CUTOFF consensus_score=42.6 fisher_strand_p_value=0.839109 frequency=4.100e-01 ks_quality_p_value=0.525408 major_base=T major_cov=28/31 major_frequency=5.900e-01 minor_base=G minor_cov=21/20 new_cov=21/20 polymorphism_frequency=4.100e-01 polymorphism_score=104.5 prediction=polymorphism ref_cov=28/31 total_cov=50/51 RA 1608 . NC_000913 4509667 0 A C bias_e_value=4224170 bias_p_value=0.910057 consensus_reject=FREQUENCY_CUTOFF consensus_score=91.2 fisher_strand_p_value=0.839669 frequency=3.524e-01 ks_quality_p_value=0.722966 major_base=A major_cov=33/35 major_frequency=6.476e-01 minor_base=C minor_cov=19/18 new_cov=19/18 polymorphism_frequency=3.524e-01 polymorphism_score=88.3 prediction=polymorphism ref_cov=33/35 total_cov=52/53 RA 1609 . NC_000913 4509721 0 T C bias_e_value=3884810 bias_p_value=0.836947 consensus_reject=FREQUENCY_CUTOFF consensus_score=113.2 fisher_strand_p_value=1 frequency=2.625e-01 ks_quality_p_value=0.486381 major_base=T major_cov=32/27 major_frequency=7.375e-01 minor_base=C minor_cov=12/9 new_cov=12/9 polymorphism_frequency=2.625e-01 polymorphism_score=49.9 prediction=polymorphism ref_cov=32/27 total_cov=46/37 RA 1610 . NC_000913 4509733 0 A C bias_e_value=4510910 bias_p_value=0.971833 consensus_reject=FREQUENCY_CUTOFF consensus_score=114.2 fisher_strand_p_value=0.801977 frequency=2.692e-01 ks_quality_p_value=0.962918 major_base=A major_cov=32/25 major_frequency=7.308e-01 minor_base=C minor_cov=11/10 new_cov=11/10 polymorphism_frequency=2.692e-01 polymorphism_score=40.1 prediction=polymorphism ref_cov=32/25 total_cov=44/36 RA 1611 . NC_000913 4509745 0 A G bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=129.3 fisher_strand_p_value=1 frequency=2.192e-01 ks_quality_p_value=1 major_base=A major_cov=32/25 major_frequency=7.808e-01 minor_base=G minor_cov=9/7 new_cov=9/7 polymorphism_frequency=2.192e-01 polymorphism_score=28.7 prediction=polymorphism ref_cov=32/25 total_cov=41/32 RA 1612 . NC_000913 4509751 0 C T bias_e_value=3685430 bias_p_value=0.793991 consensus_reject=FREQUENCY_CUTOFF consensus_score=127.1 fisher_strand_p_value=0.778858 frequency=2.055e-01 ks_quality_p_value=0.553742 major_base=C major_cov=32/26 major_frequency=7.945e-01 minor_base=T minor_cov=9/6 new_cov=9/6 polymorphism_frequency=2.055e-01 polymorphism_score=30.2 prediction=polymorphism ref_cov=32/26 total_cov=41/32 RA 1613 . NC_000913 4510238 0 T G consensus_score=141.9 frequency=1 major_base=G major_cov=23/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/21 RA 1614 . NC_000913 4512293 0 T C bias_e_value=3719520 bias_p_value=0.801335 consensus_score=239.2 fisher_strand_p_value=0.494564 frequency=1 ks_quality_p_value=0.889928 major_base=C major_cov=41/40 major_frequency=9.759e-01 minor_base=A minor_cov=2/0 new_cov=41/40 polymorphism_frequency=9.759e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/40 RA 1615 . NC_000913 4512501 0 C T bias_e_value=4229130 bias_p_value=0.911126 consensus_score=344.9 fisher_strand_p_value=0.609203 frequency=1 ks_quality_p_value=1 major_base=T major_cov=60/55 major_frequency=9.746e-01 minor_base=G minor_cov=1/2 new_cov=60/55 polymorphism_frequency=9.746e-01 polymorphism_score=NA prediction=consensus ref_cov=1/1 total_cov=64/58 RA 1616 . NC_000913 4512642 0 T C bias_e_value=4318290 bias_p_value=0.930334 consensus_score=375.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.650756 major_base=C major_cov=61/60 major_frequency=9.680e-01 minor_base=T minor_cov=2/2 new_cov=61/60 polymorphism_frequency=9.680e-01 polymorphism_score=-1.0 prediction=consensus ref_cov=2/2 total_cov=65/62 RA 1617 . NC_000913 4513044 0 T C bias_e_value=3596520 bias_p_value=0.774837 consensus_score=309.7 fisher_strand_p_value=0.412371 frequency=1 ks_quality_p_value=0.992298 major_base=C major_cov=39/57 major_frequency=9.897e-01 minor_base=A minor_cov=1/0 new_cov=39/57 polymorphism_frequency=9.897e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/58 RA 1618 . NC_000913 4513841 0 A G bias_e_value=3477730 bias_p_value=0.749245 consensus_score=289.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.381619 major_base=G major_cov=58/38 major_frequency=9.600e-01 minor_base=A minor_cov=2/2 new_cov=58/38 polymorphism_frequency=9.600e-01 polymorphism_score=1.0 prediction=consensus ref_cov=2/2 total_cov=60/40 RA 1619 . NC_000913 4514139 0 A C bias_e_value=3500710 bias_p_value=0.754194 consensus_score=350.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.386792 major_base=C major_cov=52/65 major_frequency=9.832e-01 minor_base=A minor_cov=1/1 new_cov=52/65 polymorphism_frequency=9.832e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/1 total_cov=53/66 RA 1620 . NC_000913 4514287 0 G C bias_e_value=3494630 bias_p_value=0.752885 consensus_score=317.4 fisher_strand_p_value=0.385417 frequency=1 ks_quality_p_value=1 major_base=C major_cov=36/59 major_frequency=9.896e-01 minor_base=A minor_cov=1/0 new_cov=36/59 polymorphism_frequency=9.896e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/59 RA 1621 . NC_000913 4514983 0 A C bias_e_value=3578140 bias_p_value=0.770877 consensus_score=410.2 fisher_strand_p_value=0.498033 frequency=1 ks_quality_p_value=0.812778 major_base=C major_cov=64/58 major_frequency=9.839e-01 minor_base=A minor_cov=2/0 new_cov=64/58 polymorphism_frequency=9.839e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=2/0 total_cov=66/58 RA 1622 . NC_000913 4515348 0 A C bias_e_value=1580550 bias_p_value=0.340514 consensus_score=349.9 fisher_strand_p_value=0.104556 frequency=1 ks_quality_p_value=0.99944 major_base=C major_cov=47/55 major_frequency=9.714e-01 minor_base=A minor_cov=3/0 new_cov=47/55 polymorphism_frequency=9.714e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=3/0 total_cov=50/55 RA 1623 . NC_000913 4516110 0 C T bias_e_value=1226590 bias_p_value=0.264257 consensus_score=372.8 fisher_strand_p_value=0.0730742 frequency=1 ks_quality_p_value=1 major_base=T major_cov=48/70 major_frequency=9.365e-01 minor_base=G minor_cov=6/2 new_cov=48/70 polymorphism_frequency=9.365e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=58/72 RA 1624 . NC_000913 4516378 0 G A bias_e_value=4641610 bias_p_value=0.99999 consensus_score=267.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.995565 major_base=A major_cov=33/56 major_frequency=9.780e-01 minor_base=G minor_cov=1/1 new_cov=33/56 polymorphism_frequency=9.780e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/1 total_cov=35/58 RA 1625 . NC_000913 4516632 0 T C bias_e_value=3745830 bias_p_value=0.807004 consensus_score=267.6 fisher_strand_p_value=0.589581 frequency=1 ks_quality_p_value=0.758336 major_base=C major_cov=39/48 major_frequency=9.667e-01 minor_base=T minor_cov=2/1 new_cov=39/48 polymorphism_frequency=9.667e-01 polymorphism_score=-0.6 prediction=consensus ref_cov=2/1 total_cov=43/49 RA 1626 . NC_000913 4516959 0 C T bias_e_value=1040380 bias_p_value=0.224139 consensus_score=246.0 fisher_strand_p_value=0.0583499 frequency=1 ks_quality_p_value=1 major_base=T major_cov=44/43 major_frequency=9.457e-01 minor_base=G minor_cov=5/0 new_cov=44/43 polymorphism_frequency=9.457e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=1/1 total_cov=51/44 RA 1627 . NC_000913 4517127 0 C A bias_e_value=4563030 bias_p_value=0.983062 consensus_score=306.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.821681 major_base=A major_cov=49/49 major_frequency=9.703e-01 minor_base=C minor_cov=2/1 new_cov=49/49 polymorphism_frequency=9.703e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=2/1 total_cov=51/50 RA 1628 . NC_000913 4518627 0 C A bias_e_value=4037650 bias_p_value=0.869873 consensus_score=207.5 fisher_strand_p_value=0.604789 frequency=1 ks_quality_p_value=0.885233 major_base=A major_cov=52/18 major_frequency=9.333e-01 minor_base=C minor_cov=3/2 new_cov=52/18 polymorphism_frequency=9.333e-01 polymorphism_score=3.8 prediction=consensus ref_cov=3/2 total_cov=55/20 RA 1629 . NC_000913 4518681 0 A C bias_e_value=1828230 bias_p_value=0.393875 consensus_score=234.4 fisher_strand_p_value=0.141997 frequency=1 ks_quality_p_value=0.910845 major_base=C major_cov=59/17 major_frequency=9.620e-01 minor_base=A minor_cov=1/2 new_cov=59/17 polymorphism_frequency=9.620e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=1/2 total_cov=60/19 RA 1630 . NC_000913 4518793 0 C T bias_e_value=4079030 bias_p_value=0.878789 consensus_score=236.4 fisher_strand_p_value=0.549963 frequency=1 ks_quality_p_value=1 major_base=T major_cov=48/29 major_frequency=9.625e-01 minor_base=A minor_cov=3/0 new_cov=48/29 polymorphism_frequency=9.625e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=52/29 RA 1631 . NC_000913 4530252 0 C A bias_e_value=4641580 bias_p_value=0.999983 consensus_score=169.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.994256 major_base=A major_cov=41/21 major_frequency=8.857e-01 minor_base=C minor_cov=6/2 new_cov=41/21 polymorphism_frequency=8.857e-01 polymorphism_score=6.6 prediction=consensus ref_cov=6/2 total_cov=47/23 RA 1632 . NC_000913 4532063 0 C T consensus_score=196.9 frequency=1 major_base=T major_cov=34/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/29 RA 1633 . NC_000913 4535073 0 A G bias_e_value=1911810 bias_p_value=0.411881 consensus_score=141.6 fisher_strand_p_value=0.354067 frequency=1 ks_quality_p_value=0.390572 major_base=G major_cov=27/26 major_frequency=9.138e-01 minor_base=A minor_cov=1/4 new_cov=27/26 polymorphism_frequency=9.138e-01 polymorphism_score=4.9 prediction=consensus ref_cov=1/4 total_cov=28/31 RA 1634 . NC_000913 4535189 0 C T bias_e_value=4185880 bias_p_value=0.901809 consensus_score=177.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.590959 major_base=T major_cov=26/32 major_frequency=9.831e-01 minor_base=C minor_cov=0/1 new_cov=26/32 polymorphism_frequency=9.831e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/1 total_cov=26/33 RA 1635 . NC_000913 4540111 0 A G bias_e_value=4604330 bias_p_value=0.991959 consensus_score=57.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.875898 major_base=G major_cov=12/9 major_frequency=9.130e-01 minor_base=A minor_cov=1/1 new_cov=12/9 polymorphism_frequency=9.130e-01 polymorphism_score=-1.6 prediction=consensus ref_cov=1/1 total_cov=13/11 RA 1636 . NC_000913 4540114 0 A T consensus_score=59.0 frequency=1 major_base=T major_cov=12/10 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/10 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/10 RA 1637 . NC_000913 4540431 0 T C consensus_score=90.2 frequency=1 major_base=C major_cov=14/13 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=14/13 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/13 RA 1638 . NC_000913 4542683 0 T . bias_e_value=3804880 bias_p_value=0.819726 consensus_score=52.9 fisher_strand_p_value=0.470588 frequency=1 ks_quality_p_value=0.984436 major_base=. major_cov=7/8 major_frequency=8.824e-01 minor_base=G minor_cov=2/0 new_cov=7/8 polymorphism_frequency=8.824e-01 polymorphism_score=1.4 prediction=consensus ref_cov=0/0 total_cov=9/8 RA 1639 . NC_000913 4542692 1 . A bias_e_value=3882580 bias_p_value=0.836465 consensus_score=31.5 fisher_strand_p_value=0.485714 frequency=1 ks_quality_p_value=1 major_base=A major_cov=7/6 major_frequency=8.667e-01 minor_base=. minor_cov=2/0 new_cov=7/6 polymorphism_frequency=8.667e-01 polymorphism_score=-1.6 prediction=consensus ref_cov=2/0 total_cov=9/6 RA 1640 . NC_000913 4543047 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=74.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=16/8 major_frequency=9.600e-01 minor_base=T minor_cov=1/0 new_cov=16/8 polymorphism_frequency=9.600e-01 polymorphism_score=-6.2 prediction=consensus ref_cov=1/0 total_cov=17/8 RA 1641 . NC_000913 4544464 0 A T bias_e_value=4590430 bias_p_value=0.988965 consensus_score=135.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.855164 major_base=T major_cov=23/23 major_frequency=9.388e-01 minor_base=A minor_cov=2/1 new_cov=23/23 polymorphism_frequency=9.388e-01 polymorphism_score=-0.8 prediction=consensus ref_cov=2/1 total_cov=25/24 RA 1642 . NC_000913 4546272 0 A C bias_e_value=1789810 bias_p_value=0.385598 consensus_score=166.0 fisher_strand_p_value=0.125322 frequency=1 ks_quality_p_value=1 major_base=C major_cov=31/27 major_frequency=9.355e-01 minor_base=A minor_cov=4/0 new_cov=31/27 polymorphism_frequency=9.355e-01 polymorphism_score=NA prediction=consensus ref_cov=4/0 total_cov=35/27 RA 1643 . NC_000913 4549223 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=134.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=23/26 major_frequency=9.800e-01 minor_base=T minor_cov=0/1 new_cov=23/26 polymorphism_frequency=9.800e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=23/27 RA 1644 . NC_000913 4553609 0 T A bias_e_value=4624770 bias_p_value=0.996364 consensus_score=249.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.91594 major_base=A major_cov=39/41 major_frequency=9.756e-01 minor_base=C minor_cov=1/1 new_cov=39/41 polymorphism_frequency=9.756e-01 polymorphism_score=-6.0 prediction=consensus ref_cov=0/1 total_cov=40/43 RA 1645 . NC_000913 4556917 0 A G bias_e_value=1061270 bias_p_value=0.228641 consensus_score=128.5 fisher_strand_p_value=0.0787879 frequency=1 ks_quality_p_value=0.7608 major_base=G major_cov=32/11 major_frequency=9.556e-01 minor_base=A minor_cov=0/2 new_cov=32/11 polymorphism_frequency=9.556e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=0/2 total_cov=32/13 RA 1646 . NC_000913 4560309 0 T A bias_e_value=3660680 bias_p_value=0.788658 consensus_score=112.5 fisher_strand_p_value=0.425 frequency=1 ks_quality_p_value=1 major_base=A major_cov=16/23 major_frequency=9.750e-01 minor_base=C minor_cov=1/0 new_cov=16/23 polymorphism_frequency=9.750e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/23 RA 1647 . NC_000913 4563567 0 T C bias_e_value=3575980 bias_p_value=0.770411 consensus_score=152.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.404275 major_base=C major_cov=32/18 major_frequency=9.434e-01 minor_base=T minor_cov=2/1 new_cov=32/18 polymorphism_frequency=9.434e-01 polymorphism_score=0.1 prediction=consensus ref_cov=2/1 total_cov=35/19 RA 1648 . NC_000913 4564141 0 T G bias_e_value=4641630 bias_p_value=0.999996 consensus_score=245.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997083 major_base=G major_cov=51/27 major_frequency=9.873e-01 minor_base=A minor_cov=1/0 new_cov=51/27 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=53/28 RA 1649 . NC_000913 4567272 0 C A bias_e_value=2948580 bias_p_value=0.635245 consensus_score=124.5 fisher_strand_p_value=0.27907 frequency=1 ks_quality_p_value=1 major_base=A major_cov=31/11 major_frequency=9.767e-01 minor_base=G minor_cov=0/1 new_cov=31/11 polymorphism_frequency=9.767e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/12 RA 1650 . NC_000913 4569307 0 T C bias_e_value=3879680 bias_p_value=0.835839 consensus_score=74.0 fisher_strand_p_value=0.484848 frequency=1 ks_quality_p_value=1 major_base=C major_cov=17/15 major_frequency=9.697e-01 minor_base=A minor_cov=0/1 new_cov=17/15 polymorphism_frequency=9.697e-01 polymorphism_score=-6.4 prediction=consensus ref_cov=0/1 total_cov=18/17 RA 1651 . NC_000913 4591610 0 C G consensus_score=14.6 deleted=1 frequency=1 major_base=G major_cov=5/1 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=5/1 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=5/1 RA 1652 . NC_000913 4591674 0 A G consensus_score=69.4 frequency=1 major_base=G major_cov=16/5 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/5 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/5 RA 1653 . NC_000913 4591677 0 T C consensus_score=63.7 frequency=1 major_base=C major_cov=16/5 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/5 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/5 RA 1654 . NC_000913 4591930 0 G C bias_e_value=3897740 bias_p_value=0.83973 consensus_score=138.7 fisher_strand_p_value=0.607011 frequency=1 ks_quality_p_value=0.807671 major_base=C major_cov=31/16 major_frequency=9.216e-01 minor_base=G minor_cov=2/2 new_cov=31/16 polymorphism_frequency=9.216e-01 polymorphism_score=3.8 prediction=consensus ref_cov=2/2 total_cov=34/19 RA 1655 . NC_000913 4591974 0 G A bias_e_value=3221440 bias_p_value=0.694028 consensus_score=121.8 fisher_strand_p_value=0.435103 frequency=1 ks_quality_p_value=0.754656 major_base=A major_cov=29/19 major_frequency=8.727e-01 minor_base=G minor_cov=3/4 new_cov=29/19 polymorphism_frequency=8.727e-01 polymorphism_score=9.5 prediction=consensus ref_cov=3/4 total_cov=32/23 RA 1656 . NC_000913 4592082 0 G A bias_e_value=4149450 bias_p_value=0.89396 consensus_score=170.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.576384 major_base=A major_cov=32/27 major_frequency=9.365e-01 minor_base=G minor_cov=2/2 new_cov=32/27 polymorphism_frequency=9.365e-01 polymorphism_score=2.6 prediction=consensus ref_cov=2/2 total_cov=35/29 RA 1657 . NC_000913 4592188 0 C T bias_e_value=3510670 bias_p_value=0.756341 consensus_score=184.1 fisher_strand_p_value=0.491525 frequency=1 ks_quality_p_value=0.791535 major_base=T major_cov=28/30 major_frequency=9.831e-01 minor_base=C minor_cov=1/0 new_cov=28/30 polymorphism_frequency=9.831e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=29/31 RA 1658 . NC_000913 4595570 0 A . bias_e_value=4448450 bias_p_value=0.958376 consensus_score=152.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.725709 major_base=. major_cov=21/23 major_frequency=8.800e-01 minor_base=A minor_cov=3/3 new_cov=21/23 polymorphism_frequency=8.800e-01 polymorphism_score=21.4 prediction=consensus ref_cov=3/3 total_cov=24/26 RA 1659 . NC_000913 4602089 0 C T bias_e_value=2111950 bias_p_value=0.455001 consensus_score=227.0 fisher_strand_p_value=0.610759 frequency=1 ks_quality_p_value=0.263569 major_base=T major_cov=37/40 major_frequency=9.625e-01 minor_base=C minor_cov=2/1 new_cov=37/40 polymorphism_frequency=9.625e-01 polymorphism_score=-0.2 prediction=consensus ref_cov=2/1 total_cov=39/41 RA 1660 . NC_000913 4605702 0 A C consensus_score=130.5 frequency=1 major_base=C major_cov=15/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/27 RA 1661 . NC_000913 4605791 0 A G consensus_score=156.7 frequency=1 major_base=G major_cov=18/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/31 RA 1662 . NC_000913 4614170 0 C T bias_e_value=4638560 bias_p_value=0.999335 consensus_score=235.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.96375 major_base=T major_cov=37/38 major_frequency=9.615e-01 minor_base=C minor_cov=2/1 new_cov=37/38 polymorphism_frequency=9.615e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=2/1 total_cov=39/39 RA 1663 . NC_000913 4616022 0 T C bias_e_value=4428620 bias_p_value=0.954105 consensus_score=160.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.71275 major_base=C major_cov=28/26 major_frequency=9.643e-01 minor_base=T minor_cov=1/1 new_cov=28/26 polymorphism_frequency=9.643e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=1/1 total_cov=29/27 RA 1664 . NC_000913 4616073 0 T C bias_e_value=4239630 bias_p_value=0.913389 consensus_score=196.5 fisher_strand_p_value=0.614967 frequency=1 ks_quality_p_value=0.998107 major_base=C major_cov=31/32 major_frequency=9.403e-01 minor_base=T minor_cov=1/3 new_cov=31/32 polymorphism_frequency=9.403e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=1/3 total_cov=33/36 RA 1665 . NC_000913 4616514 0 T G bias_e_value=4641570 bias_p_value=0.999983 consensus_score=243.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.994099 major_base=G major_cov=36/41 major_frequency=9.747e-01 minor_base=T minor_cov=1/1 new_cov=36/41 polymorphism_frequency=9.747e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=1/1 total_cov=37/42 RA 1666 . NC_000913 4616535 0 A G bias_e_value=3323390 bias_p_value=0.715992 consensus_score=219.7 fisher_strand_p_value=0.486486 frequency=1 ks_quality_p_value=0.71662 major_base=G major_cov=35/38 major_frequency=9.865e-01 minor_base=A minor_cov=1/0 new_cov=35/38 polymorphism_frequency=9.865e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/0 total_cov=36/39 RA 1667 . NC_000913 4616648 0 C T bias_e_value=4639120 bias_p_value=0.999455 consensus_score=212.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.967153 major_base=T major_cov=30/40 major_frequency=9.589e-01 minor_base=C minor_cov=1/2 new_cov=30/40 polymorphism_frequency=9.589e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=1/2 total_cov=32/42 RA 1668 . NC_000913 4616682 0 C T bias_e_value=4560630 bias_p_value=0.982545 consensus_score=227.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.819071 major_base=T major_cov=31/43 major_frequency=9.487e-01 minor_base=C minor_cov=2/2 new_cov=31/43 polymorphism_frequency=9.487e-01 polymorphism_score=1.3 prediction=consensus ref_cov=2/2 total_cov=33/45 RA 1669 . NC_000913 4617053 0 G C bias_e_value=3928050 bias_p_value=0.846261 consensus_score=151.7 fisher_strand_p_value=0.569149 frequency=1 ks_quality_p_value=0.877714 major_base=C major_cov=19/27 major_frequency=9.388e-01 minor_base=G minor_cov=2/1 new_cov=19/27 polymorphism_frequency=9.388e-01 polymorphism_score=2.3 prediction=consensus ref_cov=2/1 total_cov=21/28 RA 1670 . NC_000913 4617138 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=119.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=21/21 major_frequency=8.936e-01 minor_base=C minor_cov=2/3 new_cov=21/21 polymorphism_frequency=8.936e-01 polymorphism_score=4.2 prediction=consensus ref_cov=2/3 total_cov=23/24 RA 1671 . NC_000913 4617238 0 G A bias_e_value=4189050 bias_p_value=0.902492 consensus_score=128.9 fisher_strand_p_value=0.611919 frequency=1 ks_quality_p_value=0.967874 major_base=A major_cov=22/23 major_frequency=9.184e-01 minor_base=G minor_cov=1/3 new_cov=22/23 polymorphism_frequency=9.184e-01 polymorphism_score=1.0 prediction=consensus ref_cov=1/3 total_cov=23/26 RA 1672 . NC_000913 4617409 0 G A consensus_score=117.0 frequency=1 major_base=A major_cov=29/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/9 RA 1673 . NC_000913 4617412 0 C T consensus_score=111.4 frequency=1 major_base=T major_cov=29/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/9 RA 1674 . NC_000913 4617415 0 C T bias_e_value=2673780 bias_p_value=0.576041 consensus_score=108.4 fisher_strand_p_value=0.236842 frequency=1 ks_quality_p_value=0.994326 major_base=T major_cov=29/8 major_frequency=9.737e-01 minor_base=C minor_cov=0/1 new_cov=29/8 polymorphism_frequency=9.737e-01 polymorphism_score=-6.5 prediction=consensus ref_cov=0/1 total_cov=29/9 RA 1675 . NC_000913 4617436 0 T C consensus_score=132.1 frequency=1 major_base=C major_cov=32/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/12 RA 1676 . NC_000913 4617499 0 T A consensus_score=137.1 frequency=1 major_base=A major_cov=30/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/14 RA 1677 . NC_000913 4617532 0 C T consensus_score=161.1 frequency=1 major_base=T major_cov=32/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/18 RA 1678 . NC_000913 4617565 0 C T bias_e_value=3748900 bias_p_value=0.807664 consensus_score=141.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.447922 major_base=T major_cov=29/21 major_frequency=9.804e-01 minor_base=C minor_cov=1/0 new_cov=29/21 polymorphism_frequency=9.804e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/0 total_cov=30/21 RA 1679 . NC_000913 4617574 0 C A bias_e_value=4487250 bias_p_value=0.966737 consensus_score=159.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.753416 major_base=A major_cov=29/21 major_frequency=9.804e-01 minor_base=C minor_cov=1/0 new_cov=29/21 polymorphism_frequency=9.804e-01 polymorphism_score=-5.3 prediction=consensus ref_cov=1/0 total_cov=30/21 RA 1680 . NC_000913 4617616 0 T C bias_e_value=918948 bias_p_value=0.197979 consensus_score=166.7 fisher_strand_p_value=0.227922 frequency=1 ks_quality_p_value=0.216731 major_base=C major_cov=25/29 major_frequency=9.643e-01 minor_base=T minor_cov=2/0 new_cov=25/29 polymorphism_frequency=9.643e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=2/0 total_cov=27/29 RA 1681 . NC_000913 4617631 0 T G bias_e_value=3126950 bias_p_value=0.673671 consensus_score=137.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.310516 major_base=G major_cov=23/28 major_frequency=9.273e-01 minor_base=T minor_cov=2/2 new_cov=23/28 polymorphism_frequency=9.273e-01 polymorphism_score=1.9 prediction=consensus ref_cov=2/2 total_cov=25/30 RA 1682 . NC_000913 4617928 0 G A bias_e_value=3379060 bias_p_value=0.727987 consensus_score=182.5 fisher_strand_p_value=0.360188 frequency=1 ks_quality_p_value=1 major_base=A major_cov=30/31 major_frequency=9.242e-01 minor_base=G minor_cov=1/4 new_cov=30/31 polymorphism_frequency=9.242e-01 polymorphism_score=1.7 prediction=consensus ref_cov=1/4 total_cov=32/35 RA 1683 . NC_000913 4617976 0 T C bias_e_value=2861590 bias_p_value=0.616503 consensus_score=232.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.264681 major_base=C major_cov=35/40 major_frequency=9.615e-01 minor_base=T minor_cov=1/2 new_cov=35/40 polymorphism_frequency=9.615e-01 polymorphism_score=-1.0 prediction=consensus ref_cov=1/2 total_cov=36/42 RA 1684 . NC_000913 4618030 0 C T bias_e_value=4414990 bias_p_value=0.951169 consensus_score=234.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.704231 major_base=T major_cov=30/45 major_frequency=9.740e-01 minor_base=C minor_cov=1/1 new_cov=30/45 polymorphism_frequency=9.740e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=1/1 total_cov=32/48 RA 1685 . NC_000913 4618055 0 C T bias_e_value=4592740 bias_p_value=0.989462 consensus_score=244.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.858378 major_base=T major_cov=37/43 major_frequency=9.639e-01 minor_base=C minor_cov=1/2 new_cov=37/43 polymorphism_frequency=9.639e-01 polymorphism_score=-0.3 prediction=consensus ref_cov=1/2 total_cov=38/45 RA 1686 . NC_000913 4618069 0 T C bias_e_value=4639260 bias_p_value=0.999485 consensus_score=220.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.968088 major_base=C major_cov=32/42 major_frequency=9.250e-01 minor_base=T minor_cov=3/3 new_cov=32/42 polymorphism_frequency=9.250e-01 polymorphism_score=1.3 prediction=consensus ref_cov=3/3 total_cov=35/45 RA 1687 . NC_000913 4618075 0 C T bias_e_value=4583920 bias_p_value=0.987562 consensus_score=224.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.846482 major_base=T major_cov=34/41 major_frequency=9.375e-01 minor_base=C minor_cov=2/3 new_cov=34/41 polymorphism_frequency=9.375e-01 polymorphism_score=0.5 prediction=consensus ref_cov=2/3 total_cov=36/44 RA 1688 . NC_000913 4618276 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=203.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=35/34 major_frequency=9.857e-01 minor_base=G minor_cov=1/0 new_cov=35/34 polymorphism_frequency=9.857e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=37/35 RA 1689 . NC_000913 4618312 0 T C bias_e_value=4241230 bias_p_value=0.913733 consensus_score=214.2 fisher_strand_p_value=0.614509 frequency=1 ks_quality_p_value=1 major_base=C major_cov=34/36 major_frequency=9.589e-01 minor_base=T minor_cov=2/1 new_cov=34/36 polymorphism_frequency=9.589e-01 polymorphism_score=-1.6 prediction=consensus ref_cov=2/1 total_cov=37/37 RA 1690 . NC_000913 4618483 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=185.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=30/32 major_frequency=9.841e-01 minor_base=C minor_cov=0/1 new_cov=30/32 polymorphism_frequency=9.841e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=30/33 RA 1691 . NC_000913 4618489 0 C T bias_e_value=4237460 bias_p_value=0.912921 consensus_score=164.4 fisher_strand_p_value=0.612846 frequency=1 ks_quality_p_value=1 major_base=T major_cov=28/28 major_frequency=9.333e-01 minor_base=G minor_cov=1/3 new_cov=28/28 polymorphism_frequency=9.333e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=29/32 RA 1692 . NC_000913 4618702 0 T C bias_e_value=3799210 bias_p_value=0.818504 consensus_score=133.0 fisher_strand_p_value=0.538462 frequency=1 ks_quality_p_value=0.857404 major_base=C major_cov=32/18 major_frequency=9.615e-01 minor_base=T minor_cov=2/0 new_cov=32/18 polymorphism_frequency=9.615e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=2/0 total_cov=35/18 RA 1693 . NC_000913 4618717 0 T G bias_e_value=4069840 bias_p_value=0.876807 consensus_score=145.2 fisher_strand_p_value=0.546667 frequency=1 ks_quality_p_value=1 major_base=G major_cov=32/17 major_frequency=9.608e-01 minor_base=T minor_cov=2/0 new_cov=32/17 polymorphism_frequency=9.608e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=2/0 total_cov=34/17 RA 1694 . NC_000913 4618804 0 T G bias_e_value=4640020 bias_p_value=0.999648 consensus_score=188.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.973579 major_base=G major_cov=39/21 major_frequency=9.836e-01 minor_base=A minor_cov=1/0 new_cov=39/21 polymorphism_frequency=9.836e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=41/21 RA 1695 . NC_000913 4619026 0 A G bias_e_value=4638590 bias_p_value=0.999341 consensus_score=245.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.963903 major_base=G major_cov=39/41 major_frequency=9.412e-01 minor_base=A minor_cov=2/3 new_cov=39/41 polymorphism_frequency=9.412e-01 polymorphism_score=1.0 prediction=consensus ref_cov=2/3 total_cov=42/44 RA 1696 . NC_000913 4619080 0 G T bias_e_value=974497 bias_p_value=0.209946 consensus_score=247.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.0534297 major_base=T major_cov=39/40 major_frequency=9.518e-01 minor_base=G minor_cov=2/2 new_cov=39/40 polymorphism_frequency=9.518e-01 polymorphism_score=5.2 prediction=consensus ref_cov=2/2 total_cov=41/42 RA 1697 . NC_000913 4619131 0 G A bias_e_value=4335270 bias_p_value=0.933994 consensus_score=237.6 fisher_strand_p_value=0.659407 frequency=1 ks_quality_p_value=1 major_base=A major_cov=36/43 major_frequency=9.405e-01 minor_base=G minor_cov=3/2 new_cov=36/43 polymorphism_frequency=9.405e-01 polymorphism_score=2.7 prediction=consensus ref_cov=3/2 total_cov=39/45 RA 1698 . NC_000913 4619134 0 G A bias_e_value=3528890 bias_p_value=0.760265 consensus_score=241.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.393241 major_base=A major_cov=37/43 major_frequency=9.524e-01 minor_base=G minor_cov=2/2 new_cov=37/43 polymorphism_frequency=9.524e-01 polymorphism_score=2.4 prediction=consensus ref_cov=2/2 total_cov=39/45 RA 1699 . NC_000913 4619197 0 G A bias_e_value=3710980 bias_p_value=0.799495 consensus_score=255.9 fisher_strand_p_value=0.443038 frequency=1 ks_quality_p_value=0.988383 major_base=A major_cov=34/44 major_frequency=9.873e-01 minor_base=G minor_cov=1/0 new_cov=34/44 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=36/44 RA 1700 . NC_000913 4619335 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=161.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=17/39 major_frequency=9.492e-01 minor_base=G minor_cov=1/2 new_cov=17/39 polymorphism_frequency=9.492e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=20/41 RA 1701 . NC_000913 4619338 0 C T bias_e_value=3060020 bias_p_value=0.659252 consensus_score=176.0 fisher_strand_p_value=0.333333 frequency=1 ks_quality_p_value=0.895176 major_base=T major_cov=19/40 major_frequency=9.833e-01 minor_base=C minor_cov=1/0 new_cov=19/40 polymorphism_frequency=9.833e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=1/0 total_cov=20/41 RA 1702 . NC_000913 4619359 0 C T bias_e_value=3247010 bias_p_value=0.699537 consensus_score=186.6 fisher_strand_p_value=0.333333 frequency=1 ks_quality_p_value=1 major_base=T major_cov=20/42 major_frequency=9.841e-01 minor_base=C minor_cov=1/0 new_cov=20/42 polymorphism_frequency=9.841e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=21/42 RA 1703 . NC_000913 4619393 0 C T bias_e_value=3247010 bias_p_value=0.699537 consensus_score=159.7 fisher_strand_p_value=0.333333 frequency=1 ks_quality_p_value=1 major_base=T major_cov=17/36 major_frequency=9.815e-01 minor_base=G minor_cov=1/0 new_cov=17/36 polymorphism_frequency=9.815e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/36 RA 1704 . NC_000913 4619454 0 A G bias_e_value=4609470 bias_p_value=0.993067 consensus_score=137.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.884581 major_base=G major_cov=15/37 major_frequency=9.811e-01 minor_base=T minor_cov=0/1 new_cov=15/37 polymorphism_frequency=9.811e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/38 RA 1705 . NC_000913 4619917 0 T C bias_e_value=2334030 bias_p_value=0.502844 consensus_score=124.6 fisher_strand_p_value=0.191919 frequency=1 ks_quality_p_value=0.981567 major_base=C major_cov=18/25 major_frequency=9.556e-01 minor_base=T minor_cov=2/0 new_cov=18/25 polymorphism_frequency=9.556e-01 polymorphism_score=-5.4 prediction=consensus ref_cov=2/0 total_cov=21/25 RA 1706 . NC_000913 4620067 0 A G bias_e_value=3854420 bias_p_value=0.830399 consensus_score=205.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.477412 major_base=G major_cov=37/25 major_frequency=9.841e-01 minor_base=A minor_cov=1/0 new_cov=37/25 polymorphism_frequency=9.841e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=38/26 RA 1707 . NC_000913 4620145 0 T C bias_e_value=3986500 bias_p_value=0.858854 consensus_score=209.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.518189 major_base=C major_cov=39/29 major_frequency=9.577e-01 minor_base=T minor_cov=2/1 new_cov=39/29 polymorphism_frequency=9.577e-01 polymorphism_score=-0.5 prediction=consensus ref_cov=2/1 total_cov=41/31 RA 1708 . NC_000913 4620150 0 A G bias_e_value=4375180 bias_p_value=0.942591 consensus_score=206.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.680884 major_base=G major_cov=38/29 major_frequency=9.571e-01 minor_base=A minor_cov=2/1 new_cov=38/29 polymorphism_frequency=9.571e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=2/1 total_cov=40/30 RA 1709 . NC_000913 4620154 0 T C bias_e_value=3645220 bias_p_value=0.785327 consensus_score=203.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.421128 major_base=C major_cov=38/29 major_frequency=9.571e-01 minor_base=T minor_cov=2/1 new_cov=38/29 polymorphism_frequency=9.571e-01 polymorphism_score=-0.2 prediction=consensus ref_cov=2/1 total_cov=40/30 RA 1710 . NC_000913 4620157 0 C T bias_e_value=3390930 bias_p_value=0.730543 consensus_score=207.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.3627 major_base=T major_cov=37/28 major_frequency=9.559e-01 minor_base=C minor_cov=2/1 new_cov=37/28 polymorphism_frequency=9.559e-01 polymorphism_score=0.3 prediction=consensus ref_cov=2/1 total_cov=40/30 RA 1711 . NC_000913 4620160 0 T C bias_e_value=4632900 bias_p_value=0.998115 consensus_score=218.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.939238 major_base=C major_cov=38/29 major_frequency=9.571e-01 minor_base=T minor_cov=2/1 new_cov=38/29 polymorphism_frequency=9.571e-01 polymorphism_score=-0.4 prediction=consensus ref_cov=2/1 total_cov=40/30 RA 1712 . NC_000913 4620223 0 T C bias_e_value=1855920 bias_p_value=0.399841 consensus_score=190.5 fisher_strand_p_value=0.597733 frequency=1 ks_quality_p_value=0.221287 major_base=C major_cov=30/35 major_frequency=9.559e-01 minor_base=T minor_cov=2/1 new_cov=30/35 polymorphism_frequency=9.559e-01 polymorphism_score=-0.0 prediction=consensus ref_cov=2/1 total_cov=34/36 RA 1713 . NC_000913 4620256 0 C T bias_e_value=3264750 bias_p_value=0.70336 consensus_score=183.1 fisher_strand_p_value=0.336829 frequency=1 ks_quality_p_value=1 major_base=T major_cov=30/36 major_frequency=9.429e-01 minor_base=C minor_cov=3/1 new_cov=30/36 polymorphism_frequency=9.429e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=3/1 total_cov=38/37 RA 1714 . NC_000913 4620358 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=187.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=28/37 major_frequency=9.701e-01 minor_base=C minor_cov=1/1 new_cov=28/37 polymorphism_frequency=9.701e-01 polymorphism_score=NA prediction=consensus ref_cov=1/1 total_cov=32/38 RA 1715 . NC_000913 4620385 0 G A bias_e_value=4639370 bias_p_value=0.999508 consensus_score=228.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.968807 major_base=A major_cov=37/34 major_frequency=9.861e-01 minor_base=G minor_cov=1/0 new_cov=37/34 polymorphism_frequency=9.861e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=1/0 total_cov=38/34 RA 1716 . NC_000913 4620415 0 A G bias_e_value=4614130 bias_p_value=0.99407 consensus_score=232.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.893091 major_base=G major_cov=37/34 major_frequency=9.861e-01 minor_base=A minor_cov=1/0 new_cov=37/34 polymorphism_frequency=9.861e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=1/0 total_cov=38/35 RA 1717 . NC_000913 4620427 0 G A bias_e_value=4636210 bias_p_value=0.998828 consensus_score=245.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.951977 major_base=A major_cov=40/36 major_frequency=9.870e-01 minor_base=G minor_cov=1/0 new_cov=40/36 polymorphism_frequency=9.870e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=1/0 total_cov=41/37 RA 1718 . NC_000913 4620559 0 C T bias_e_value=4290920 bias_p_value=0.924439 consensus_score=252.8 fisher_strand_p_value=0.637357 frequency=1 ks_quality_p_value=1 major_base=T major_cov=34/46 major_frequency=9.524e-01 minor_base=C minor_cov=1/3 new_cov=34/46 polymorphism_frequency=9.524e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=1/3 total_cov=37/49 RA 1719 . NC_000913 4620571 0 A G bias_e_value=4639130 bias_p_value=0.999456 consensus_score=254.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.967206 major_base=G major_cov=35/44 major_frequency=9.634e-01 minor_base=A minor_cov=1/2 new_cov=35/44 polymorphism_frequency=9.634e-01 polymorphism_score=-3.0 prediction=consensus ref_cov=1/2 total_cov=36/47 RA 1720 . NC_000913 4620637 0 C T bias_e_value=3477980 bias_p_value=0.749297 consensus_score=205.9 fisher_strand_p_value=0.534161 frequency=1 ks_quality_p_value=0.714527 major_base=T major_cov=25/43 major_frequency=9.714e-01 minor_base=C minor_cov=0/2 new_cov=25/43 polymorphism_frequency=9.714e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=0/2 total_cov=25/45 RA 1721 . NC_000913 4620652 0 C T bias_e_value=4577730 bias_p_value=0.986229 consensus_score=181.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.838698 major_base=T major_cov=20/41 major_frequency=9.683e-01 minor_base=C minor_cov=0/2 new_cov=20/41 polymorphism_frequency=9.683e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=0/2 total_cov=21/43 RA 1722 . NC_000913 4620706 0 A T bias_e_value=1483760 bias_p_value=0.319662 consensus_score=148.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.0954436 major_base=T major_cov=16/31 major_frequency=9.400e-01 minor_base=A minor_cov=1/2 new_cov=16/31 polymorphism_frequency=9.400e-01 polymorphism_score=-0.8 prediction=consensus ref_cov=1/2 total_cov=17/34 RA 1723 . NC_000913 4620709 0 T C bias_e_value=3476490 bias_p_value=0.748978 consensus_score=155.0 fisher_strand_p_value=0.546667 frequency=1 ks_quality_p_value=0.697576 major_base=C major_cov=17/32 major_frequency=9.608e-01 minor_base=T minor_cov=0/2 new_cov=17/32 polymorphism_frequency=9.608e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=0/2 total_cov=17/34 RA 1724 . NC_000913 4620742 0 T C bias_e_value=4578130 bias_p_value=0.986314 consensus_score=121.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.839185 major_base=C major_cov=14/28 major_frequency=9.545e-01 minor_base=T minor_cov=0/2 new_cov=14/28 polymorphism_frequency=9.545e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=0/2 total_cov=14/31 RA 1725 . NC_000913 4620763 0 C T bias_e_value=4615010 bias_p_value=0.99426 consensus_score=121.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.894783 major_base=T major_cov=13/28 major_frequency=9.535e-01 minor_base=C minor_cov=0/2 new_cov=13/28 polymorphism_frequency=9.535e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=0/2 total_cov=13/30 RA 1726 . NC_000913 4620766 0 C T bias_e_value=4639540 bias_p_value=0.999545 consensus_score=118.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.969972 major_base=T major_cov=13/27 major_frequency=9.756e-01 minor_base=A minor_cov=0/1 new_cov=13/27 polymorphism_frequency=9.756e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/28 RA 1727 . NC_000913 4621236 0 C T bias_e_value=3644910 bias_p_value=0.785262 consensus_score=232.5 fisher_strand_p_value=0.421053 frequency=1 ks_quality_p_value=1 major_base=T major_cov=44/31 major_frequency=9.868e-01 minor_base=C minor_cov=0/1 new_cov=44/31 polymorphism_frequency=9.868e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=44/32 RA 1728 . NC_000913 4621278 0 C T bias_e_value=1951710 bias_p_value=0.420478 consensus_score=206.0 fisher_strand_p_value=0.142669 frequency=1 ks_quality_p_value=1 major_base=T major_cov=42/24 major_frequency=9.706e-01 minor_base=C minor_cov=0/2 new_cov=42/24 polymorphism_frequency=9.706e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/2 total_cov=42/27 RA 1729 . NC_000913 4621296 0 A G bias_e_value=1985340 bias_p_value=0.427723 consensus_score=210.6 fisher_strand_p_value=0.149616 frequency=1 ks_quality_p_value=0.978601 major_base=G major_cov=42/25 major_frequency=9.710e-01 minor_base=T minor_cov=0/2 new_cov=42/25 polymorphism_frequency=9.710e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=42/29 RA 1730 . NC_000913 4621302 0 T C bias_e_value=3633840 bias_p_value=0.782877 consensus_score=227.5 fisher_strand_p_value=0.422535 frequency=1 ks_quality_p_value=0.98999 major_base=C major_cov=41/29 major_frequency=9.859e-01 minor_base=T minor_cov=0/1 new_cov=41/29 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=41/30 RA 1731 . NC_000913 4621305 0 A G bias_e_value=3626350 bias_p_value=0.781263 consensus_score=222.1 fisher_strand_p_value=0.422535 frequency=1 ks_quality_p_value=0.985618 major_base=G major_cov=41/29 major_frequency=9.859e-01 minor_base=A minor_cov=0/1 new_cov=41/29 polymorphism_frequency=9.859e-01 polymorphism_score=-6.0 prediction=consensus ref_cov=0/1 total_cov=41/30 RA 1732 . NC_000913 4621321 0 A G bias_e_value=3616470 bias_p_value=0.779134 consensus_score=214.7 fisher_strand_p_value=0.430556 frequency=1 ks_quality_p_value=0.961632 major_base=G major_cov=41/30 major_frequency=9.861e-01 minor_base=A minor_cov=0/1 new_cov=41/30 polymorphism_frequency=9.861e-01 polymorphism_score=-6.1 prediction=consensus ref_cov=0/1 total_cov=41/32 RA 1733 . NC_000913 4621410 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=201.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=27/41 major_frequency=9.855e-01 minor_base=T minor_cov=0/1 new_cov=27/41 polymorphism_frequency=9.855e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=27/42 RA 1734 . NC_000913 4621458 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=203.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999561 major_base=G major_cov=27/40 major_frequency=9.853e-01 minor_base=T minor_cov=0/1 new_cov=27/40 polymorphism_frequency=9.853e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/41 RA 1735 . NC_000913 4621491 0 A G bias_e_value=4066580 bias_p_value=0.876107 consensus_score=193.3 fisher_strand_p_value=0.548023 frequency=1 ks_quality_p_value=0.995413 major_base=G major_cov=20/38 major_frequency=9.667e-01 minor_base=T minor_cov=0/2 new_cov=20/38 polymorphism_frequency=9.667e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/40 RA 1736 . NC_000913 4621542 0 T C bias_e_value=2907670 bias_p_value=0.626429 consensus_score=157.1 fisher_strand_p_value=0.372549 frequency=1 ks_quality_p_value=0.73072 major_base=C major_cov=18/32 major_frequency=9.804e-01 minor_base=T minor_cov=1/0 new_cov=18/32 polymorphism_frequency=9.804e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/0 total_cov=19/32 RA 1737 . NC_000913 4621616 0 C A bias_e_value=1540760 bias_p_value=0.331943 consensus_score=43.5 fisher_strand_p_value=0.122807 frequency=1 ks_quality_p_value=0.820253 major_base=A major_cov=5/12 major_frequency=8.947e-01 minor_base=C minor_cov=2/0 new_cov=5/12 polymorphism_frequency=8.947e-01 polymorphism_score=-1.5 prediction=consensus ref_cov=2/0 total_cov=7/12 RA 1738 . NC_000913 4621624 0 T A bias_e_value=420704 bias_p_value=0.0906367 consensus_score=36.3 fisher_strand_p_value=0.0952381 frequency=1 ks_quality_p_value=0.189847 major_base=A major_cov=3/10 major_frequency=8.667e-01 minor_base=T minor_cov=2/0 new_cov=3/10 polymorphism_frequency=8.667e-01 polymorphism_score=0.2 prediction=consensus ref_cov=2/0 total_cov=5/10 RA 1739 . NC_000913 4621625 0 T C bias_e_value=94099.8 bias_p_value=0.0202729 consensus_score=30.4 fisher_strand_p_value=0.0952381 frequency=1 ks_quality_p_value=0.0312209 major_base=C major_cov=3/10 major_frequency=8.667e-01 minor_base=T minor_cov=2/0 new_cov=3/10 polymorphism_frequency=8.667e-01 polymorphism_score=-1.1 prediction=consensus ref_cov=2/0 total_cov=5/10 RA 1740 . NC_000913 4621627 0 C T bias_e_value=1460320 bias_p_value=0.314612 consensus_score=32.7 fisher_strand_p_value=0.0952381 frequency=1 ks_quality_p_value=0.979696 major_base=T major_cov=3/10 major_frequency=8.667e-01 minor_base=C minor_cov=2/0 new_cov=3/10 polymorphism_frequency=8.667e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=2/0 total_cov=5/10 RA 1741 . NC_000913 4621629 0 T G bias_e_value=1434170 bias_p_value=0.308979 consensus_score=37.9 fisher_strand_p_value=0.0952381 frequency=1 ks_quality_p_value=0.954895 major_base=G major_cov=3/10 major_frequency=8.667e-01 minor_base=T minor_cov=2/0 new_cov=3/10 polymorphism_frequency=8.667e-01 polymorphism_score=-0.9 prediction=consensus ref_cov=2/0 total_cov=5/10 RA 1742 . NC_000913 4621633 0 G T bias_e_value=554765 bias_p_value=0.119519 consensus_score=31.7 fisher_strand_p_value=0.0952381 frequency=1 ks_quality_p_value=0.26906 major_base=T major_cov=3/10 major_frequency=8.667e-01 minor_base=G minor_cov=2/0 new_cov=3/10 polymorphism_frequency=8.667e-01 polymorphism_score=1.4 prediction=consensus ref_cov=2/0 total_cov=5/10 RA 1743 . NC_000913 4621644 0 G A bias_e_value=481209 bias_p_value=0.103672 consensus_score=24.7 fisher_strand_p_value=0.128205 frequency=1 ks_quality_p_value=0.166925 major_base=A major_cov=3/8 major_frequency=8.462e-01 minor_base=G minor_cov=2/0 new_cov=3/8 polymorphism_frequency=8.462e-01 polymorphism_score=-0.9 prediction=consensus ref_cov=2/0 total_cov=5/9 RA 1744 . NC_000913 4623119 0 C T bias_e_value=4525420 bias_p_value=0.974959 consensus_score=28.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.784723 major_base=T major_cov=9/2 major_frequency=9.167e-01 minor_base=C minor_cov=1/0 new_cov=9/2 polymorphism_frequency=9.167e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=1/0 total_cov=10/2 RA 1745 . NC_000913 4623125 0 T C bias_e_value=4525420 bias_p_value=0.974959 consensus_score=29.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.784723 major_base=C major_cov=9/2 major_frequency=9.167e-01 minor_base=T minor_cov=1/0 new_cov=9/2 polymorphism_frequency=9.167e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=1/0 total_cov=10/2 RA 1746 . NC_000913 4623127 0 C T bias_e_value=4525420 bias_p_value=0.974959 consensus_score=27.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.784723 major_base=T major_cov=9/2 major_frequency=9.167e-01 minor_base=C minor_cov=1/0 new_cov=9/2 polymorphism_frequency=9.167e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=1/0 total_cov=10/2 RA 1747 . NC_000913 4623131 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=29.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=9/2 major_frequency=9.167e-01 minor_base=T minor_cov=1/0 new_cov=9/2 polymorphism_frequency=9.167e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/0 total_cov=10/2 RA 1748 . NC_000913 4623136 0 C T bias_e_value=4361400 bias_p_value=0.939623 consensus_score=31.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.673273 major_base=T major_cov=10/3 major_frequency=9.286e-01 minor_base=C minor_cov=1/0 new_cov=10/3 polymorphism_frequency=9.286e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=1/0 total_cov=11/3 RA 1749 . NC_000913 4623155 0 T G bias_e_value=4622560 bias_p_value=0.995886 consensus_score=50.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.910677 major_base=G major_cov=11/7 major_frequency=9.474e-01 minor_base=A minor_cov=1/0 new_cov=11/7 polymorphism_frequency=9.474e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=13/7 RA 1750 . NC_000913 4623188 0 C T bias_e_value=3886540 bias_p_value=0.837318 consensus_score=73.7 fisher_strand_p_value=0.498575 frequency=1 ks_quality_p_value=0.976575 major_base=T major_cov=14/11 major_frequency=9.259e-01 minor_base=C minor_cov=2/0 new_cov=14/11 polymorphism_frequency=9.259e-01 polymorphism_score=-3.2 prediction=consensus ref_cov=2/0 total_cov=16/13 RA 1751 . NC_000913 4623203 0 T C bias_e_value=3139580 bias_p_value=0.676393 consensus_score=85.8 fisher_strand_p_value=0.488172 frequency=1 ks_quality_p_value=0.640863 major_base=C major_cov=15/14 major_frequency=9.355e-01 minor_base=T minor_cov=2/0 new_cov=15/14 polymorphism_frequency=9.355e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=2/0 total_cov=17/14 RA 1752 . NC_000913 4623230 0 T C bias_e_value=4641630 bias_p_value=0.999995 consensus_score=90.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996737 major_base=C major_cov=17/17 major_frequency=9.444e-01 minor_base=T minor_cov=1/1 new_cov=17/17 polymorphism_frequency=9.444e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=1/1 total_cov=18/19 RA 1753 . NC_000913 4623336 0 G C bias_e_value=2987870 bias_p_value=0.643709 consensus_score=226.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.285764 major_base=C major_cov=34/35 major_frequency=9.857e-01 minor_base=G minor_cov=0/1 new_cov=34/35 polymorphism_frequency=9.857e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=0/1 total_cov=34/36 RA 1754 . NC_000913 4623404 0 G A bias_e_value=4640150 bias_p_value=0.999677 consensus_score=230.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.974685 major_base=A major_cov=34/41 major_frequency=9.615e-01 minor_base=G minor_cov=1/2 new_cov=34/41 polymorphism_frequency=9.615e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/2 total_cov=35/43 RA 1755 . NC_000913 4623448 0 T C bias_e_value=3590350 bias_p_value=0.773506 consensus_score=230.8 fisher_strand_p_value=0.493333 frequency=1 ks_quality_p_value=0.826438 major_base=C major_cov=38/36 major_frequency=9.867e-01 minor_base=T minor_cov=0/1 new_cov=38/36 polymorphism_frequency=9.867e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=38/38 RA 1756 . NC_000913 4623470 0 C T bias_e_value=2655500 bias_p_value=0.572103 consensus_score=225.3 fisher_strand_p_value=0.232786 frequency=1 ks_quality_p_value=1 major_base=T major_cov=37/33 major_frequency=9.722e-01 minor_base=G minor_cov=0/2 new_cov=37/33 polymorphism_frequency=9.722e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=38/35 RA 1757 . NC_000913 4623473 0 G A bias_e_value=3861400 bias_p_value=0.831903 consensus_score=226.2 fisher_strand_p_value=0.479452 frequency=1 ks_quality_p_value=1 major_base=A major_cov=38/34 major_frequency=9.863e-01 minor_base=C minor_cov=0/1 new_cov=38/34 polymorphism_frequency=9.863e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/35 RA 1758 . NC_000913 4623502 0 C T bias_e_value=3626380 bias_p_value=0.78127 consensus_score=244.6 fisher_strand_p_value=0.454545 frequency=1 ks_quality_p_value=0.916227 major_base=T major_cov=42/34 major_frequency=9.870e-01 minor_base=C minor_cov=0/1 new_cov=42/34 polymorphism_frequency=9.870e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=42/35 RA 1759 . NC_000913 4623544 0 A G bias_e_value=2700220 bias_p_value=0.581737 consensus_score=246.3 fisher_strand_p_value=0.3875 frequency=1 ks_quality_p_value=0.617962 major_base=G major_cov=49/30 major_frequency=9.875e-01 minor_base=A minor_cov=0/1 new_cov=49/30 polymorphism_frequency=9.875e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=49/32 RA 1760 . NC_000913 4623575 0 T C bias_e_value=930983 bias_p_value=0.200572 consensus_score=195.3 fisher_strand_p_value=0.0502622 frequency=1 ks_quality_p_value=1 major_base=C major_cov=41/22 major_frequency=9.545e-01 minor_base=T minor_cov=0/3 new_cov=41/22 polymorphism_frequency=9.545e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=0/3 total_cov=41/25 RA 1761 . NC_000913 4623578 0 C T bias_e_value=1899070 bias_p_value=0.409136 consensus_score=197.7 fisher_strand_p_value=0.136905 frequency=1 ks_quality_p_value=1 major_base=T major_cov=40/22 major_frequency=9.688e-01 minor_base=G minor_cov=0/2 new_cov=40/22 polymorphism_frequency=9.688e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=41/25 RA 1762 . NC_000913 4623581 0 C G bias_e_value=4641650 bias_p_value=1 consensus_score=209.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=40/23 major_frequency=9.692e-01 minor_base=C minor_cov=1/1 new_cov=40/23 polymorphism_frequency=9.692e-01 polymorphism_score=-3.1 prediction=consensus ref_cov=1/1 total_cov=41/25 RA 1763 . NC_000913 4623641 0 G A bias_e_value=1255250 bias_p_value=0.270432 consensus_score=231.0 fisher_strand_p_value=0.421053 frequency=1 ks_quality_p_value=0.179192 major_base=A major_cov=44/31 major_frequency=9.868e-01 minor_base=G minor_cov=0/1 new_cov=44/31 polymorphism_frequency=9.868e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=44/32 RA 1764 . NC_000913 4623656 0 T C bias_e_value=4414990 bias_p_value=0.951169 consensus_score=232.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.704231 major_base=C major_cov=44/31 major_frequency=9.740e-01 minor_base=T minor_cov=1/1 new_cov=44/31 polymorphism_frequency=9.740e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/1 total_cov=45/32 RA 1765 . NC_000913 4623680 0 G A bias_e_value=4319580 bias_p_value=0.930612 consensus_score=208.9 fisher_strand_p_value=0.651403 frequency=1 ks_quality_p_value=1 major_base=A major_cov=40/31 major_frequency=9.342e-01 minor_base=C minor_cov=2/3 new_cov=40/31 polymorphism_frequency=9.342e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=42/35 RA 1766 . NC_000913 4623707 0 G T bias_e_value=4240700 bias_p_value=0.913619 consensus_score=218.6 fisher_strand_p_value=0.614795 frequency=1 ks_quality_p_value=0.999155 major_base=T major_cov=36/35 major_frequency=9.467e-01 minor_base=G minor_cov=1/3 new_cov=36/35 polymorphism_frequency=9.467e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/3 total_cov=38/38 RA 1767 . NC_000913 4623732 0 A G bias_e_value=4300870 bias_p_value=0.926582 consensus_score=230.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.642155 major_base=G major_cov=33/43 major_frequency=9.870e-01 minor_base=A minor_cov=0/1 new_cov=33/43 polymorphism_frequency=9.870e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=0/1 total_cov=33/44 RA 1768 . NC_000913 4623758 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=206.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=29/45 major_frequency=9.867e-01 minor_base=T minor_cov=0/1 new_cov=29/45 polymorphism_frequency=9.867e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=29/46 RA 1769 . NC_000913 4623782 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=235.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999343 major_base=A major_cov=30/47 major_frequency=9.747e-01 minor_base=G minor_cov=1/1 new_cov=30/47 polymorphism_frequency=9.747e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/1 total_cov=31/48 RA 1770 . NC_000913 4623821 0 A G bias_e_value=4641510 bias_p_value=0.999969 consensus_score=256.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.992095 major_base=G major_cov=29/52 major_frequency=9.643e-01 minor_base=T minor_cov=1/2 new_cov=29/52 polymorphism_frequency=9.643e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=31/54 RA 1771 . NC_000913 4623911 0 C T bias_e_value=4641640 bias_p_value=0.999996 consensus_score=300.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997315 major_base=T major_cov=36/57 major_frequency=9.688e-01 minor_base=C minor_cov=1/2 new_cov=36/57 polymorphism_frequency=9.688e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=1/2 total_cov=37/60 RA 1772 . NC_000913 4623983 0 T C bias_e_value=3002960 bias_p_value=0.646958 consensus_score=289.2 fisher_strand_p_value=0.573873 frequency=1 ks_quality_p_value=0.502494 major_base=C major_cov=39/54 major_frequency=9.688e-01 minor_base=T minor_cov=2/1 new_cov=39/54 polymorphism_frequency=9.688e-01 polymorphism_score=-0.8 prediction=consensus ref_cov=2/1 total_cov=41/55 RA 1773 . NC_000913 4624037 0 T C bias_e_value=3974570 bias_p_value=0.856283 consensus_score=267.3 fisher_strand_p_value=0.560902 frequency=1 ks_quality_p_value=0.916917 major_base=C major_cov=35/55 major_frequency=9.677e-01 minor_base=T minor_cov=2/1 new_cov=35/55 polymorphism_frequency=9.677e-01 polymorphism_score=-2.1 prediction=consensus ref_cov=2/1 total_cov=37/56 RA 1774 . NC_000913 4624055 0 T C bias_e_value=3697600 bias_p_value=0.796614 consensus_score=281.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.434419 major_base=C major_cov=35/56 major_frequency=9.785e-01 minor_base=T minor_cov=1/1 new_cov=35/56 polymorphism_frequency=9.785e-01 polymorphism_score=-3.0 prediction=consensus ref_cov=1/1 total_cov=37/57 RA 1775 . NC_000913 4624226 0 G A bias_e_value=4632670 bias_p_value=0.998065 consensus_score=152.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.938447 major_base=A major_cov=11/39 major_frequency=9.804e-01 minor_base=C minor_cov=0/1 new_cov=11/39 polymorphism_frequency=9.804e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=13/40 RA 1776 . NC_000913 4624262 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=141.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=16/38 major_frequency=9.818e-01 minor_base=T minor_cov=0/1 new_cov=16/38 polymorphism_frequency=9.818e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=16/40 RA 1777 . NC_000913 4624277 0 G A consensus_score=175.1 frequency=1 major_base=A major_cov=15/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/39 RA 1778 . NC_000913 4624355 0 T C bias_e_value=3894810 bias_p_value=0.8391 consensus_score=141.7 fisher_strand_p_value=0.510204 frequency=1 ks_quality_p_value=0.959189 major_base=C major_cov=20/28 major_frequency=9.600e-01 minor_base=G minor_cov=0/2 new_cov=20/28 polymorphism_frequency=9.600e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=1/0 total_cov=21/30 RA 1779 . NC_000913 4624388 0 A C bias_e_value=3723510 bias_p_value=0.802196 consensus_score=140.5 fisher_strand_p_value=0.468085 frequency=1 ks_quality_p_value=0.942514 major_base=C major_cov=21/25 major_frequency=9.787e-01 minor_base=T minor_cov=1/0 new_cov=21/25 polymorphism_frequency=9.787e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/0 total_cov=23/25 RA 1780 . NC_000913 4624391 0 C G bias_e_value=1861570 bias_p_value=0.401058 consensus_score=147.0 fisher_strand_p_value=0.224291 frequency=1 ks_quality_p_value=0.592413 major_base=G major_cov=21/25 major_frequency=9.583e-01 minor_base=C minor_cov=2/0 new_cov=21/25 polymorphism_frequency=9.583e-01 polymorphism_score=-2.8 prediction=consensus ref_cov=2/0 total_cov=23/25 RA 1781 . NC_000913 4624400 0 C T bias_e_value=4435350 bias_p_value=0.955555 consensus_score=163.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.717072 major_base=T major_cov=25/26 major_frequency=9.808e-01 minor_base=C minor_cov=1/0 new_cov=25/26 polymorphism_frequency=9.808e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=26/27 RA 1782 . NC_000913 4624430 0 T C bias_e_value=4641260 bias_p_value=0.999915 consensus_score=154.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.987024 major_base=C major_cov=25/24 major_frequency=9.800e-01 minor_base=T minor_cov=1/0 new_cov=25/24 polymorphism_frequency=9.800e-01 polymorphism_score=-6.4 prediction=consensus ref_cov=1/0 total_cov=26/25 RA 1783 . NC_000913 4624487 0 T G bias_e_value=4500660 bias_p_value=0.969624 consensus_score=163.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.763868 major_base=G major_cov=29/25 major_frequency=9.818e-01 minor_base=T minor_cov=1/0 new_cov=29/25 polymorphism_frequency=9.818e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/0 total_cov=31/25 RA 1784 . NC_000913 4624517 0 A G bias_e_value=3836000 bias_p_value=0.826431 consensus_score=147.8 fisher_strand_p_value=0.50905 frequency=1 ks_quality_p_value=0.927387 major_base=G major_cov=29/21 major_frequency=9.615e-01 minor_base=A minor_cov=2/0 new_cov=29/21 polymorphism_frequency=9.615e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=2/0 total_cov=31/21 RA 1785 . NC_000913 4624586 0 T C bias_e_value=4510600 bias_p_value=0.971765 consensus_score=217.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.771978 major_base=C major_cov=36/33 major_frequency=9.857e-01 minor_base=T minor_cov=1/0 new_cov=36/33 polymorphism_frequency=9.857e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/0 total_cov=37/33 RA 1786 . NC_000913 4624622 0 C T consensus_score=222.8 frequency=1 major_base=T major_cov=34/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/36 RA 1787 . NC_000913 4624670 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=238.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99963 major_base=T major_cov=36/37 major_frequency=9.865e-01 minor_base=A minor_cov=1/0 new_cov=36/37 polymorphism_frequency=9.865e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/37 RA 1788 . NC_000913 4625044 0 A G bias_e_value=3957140 bias_p_value=0.852528 consensus_score=196.5 fisher_strand_p_value=0.602547 frequency=1 ks_quality_p_value=0.844247 major_base=G major_cov=34/30 major_frequency=9.552e-01 minor_base=A minor_cov=1/2 new_cov=34/30 polymorphism_frequency=9.552e-01 polymorphism_score=-0.9 prediction=consensus ref_cov=1/2 total_cov=35/32 RA 1789 . NC_000913 4625158 0 A G bias_e_value=3997860 bias_p_value=0.861301 consensus_score=202.1 fisher_strand_p_value=0.521932 frequency=1 ks_quality_p_value=1 major_base=G major_cov=42/27 major_frequency=9.718e-01 minor_base=A minor_cov=2/0 new_cov=42/27 polymorphism_frequency=9.718e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=44/27 RA 1790 . NC_000913 4625170 0 C T bias_e_value=3022720 bias_p_value=0.651216 consensus_score=189.4 fisher_strand_p_value=0.529175 frequency=1 ks_quality_p_value=0.551439 major_base=T major_cov=43/26 major_frequency=9.718e-01 minor_base=C minor_cov=2/0 new_cov=43/26 polymorphism_frequency=9.718e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=2/0 total_cov=45/26 RA 1791 . NC_000913 4625179 0 G A bias_e_value=3260830 bias_p_value=0.702515 consensus_score=195.8 fisher_strand_p_value=0.531117 frequency=1 ks_quality_p_value=0.63273 major_base=A major_cov=42/25 major_frequency=9.710e-01 minor_base=G minor_cov=2/0 new_cov=42/25 polymorphism_frequency=9.710e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=2/0 total_cov=45/26 RA 1792 . NC_000913 4625242 0 T C bias_e_value=4641650 bias_p_value=0.999999 consensus_score=206.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998793 major_base=C major_cov=36/33 major_frequency=9.583e-01 minor_base=T minor_cov=2/1 new_cov=36/33 polymorphism_frequency=9.583e-01 polymorphism_score=-1.9 prediction=consensus ref_cov=2/1 total_cov=38/34 RA 1793 . NC_000913 4625248 0 C T bias_e_value=3763000 bias_p_value=0.810702 consensus_score=180.4 fisher_strand_p_value=0.616299 frequency=1 ks_quality_p_value=0.732962 major_base=T major_cov=33/31 major_frequency=9.412e-01 minor_base=C minor_cov=3/1 new_cov=33/31 polymorphism_frequency=9.412e-01 polymorphism_score=-0.3 prediction=consensus ref_cov=3/1 total_cov=36/32 RA 1794 . NC_000913 4625377 0 T C bias_e_value=3158200 bias_p_value=0.680405 consensus_score=207.3 fisher_strand_p_value=0.599229 frequency=1 ks_quality_p_value=0.527879 major_base=C major_cov=37/32 major_frequency=9.583e-01 minor_base=T minor_cov=1/2 new_cov=37/32 polymorphism_frequency=9.583e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=1/2 total_cov=39/34 RA 1795 . NC_000913 4625533 0 C T bias_e_value=3270340 bias_p_value=0.704563 consensus_score=166.7 fisher_strand_p_value=0.492063 frequency=1 ks_quality_p_value=0.686775 major_base=T major_cov=30/31 major_frequency=9.683e-01 minor_base=G minor_cov=2/0 new_cov=30/31 polymorphism_frequency=9.683e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=0/1 total_cov=32/32 RA 1796 . NC_000913 4625546 0 C T bias_e_value=3680430 bias_p_value=0.792914 consensus_score=166.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.430008 major_base=T major_cov=28/30 major_frequency=9.831e-01 minor_base=C minor_cov=0/1 new_cov=28/30 polymorphism_frequency=9.831e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=29/31 RA 1797 . NC_000913 4626042 0 T C bias_e_value=4639810 bias_p_value=0.999603 consensus_score=257.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.971946 major_base=C major_cov=49/33 major_frequency=9.762e-01 minor_base=T minor_cov=1/1 new_cov=49/33 polymorphism_frequency=9.762e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/1 total_cov=50/34 RA 1798 . NC_000913 4626245 0 C T bias_e_value=2597710 bias_p_value=0.559652 consensus_score=260.8 fisher_strand_p_value=0.22435 frequency=1 ks_quality_p_value=1 major_base=T major_cov=39/45 major_frequency=9.767e-01 minor_base=G minor_cov=2/0 new_cov=39/45 polymorphism_frequency=9.767e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/45 RA 1799 . NC_000913 4626247 0 A G consensus_score=282.7 frequency=1 major_base=G major_cov=41/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/45 RA 1800 . NC_000913 4626391 0 A G bias_e_value=1364280 bias_p_value=0.293921 consensus_score=262.2 fisher_strand_p_value=0.0854105 frequency=1 ks_quality_p_value=0.992282 major_base=G major_cov=35/47 major_frequency=9.647e-01 minor_base=A minor_cov=3/0 new_cov=35/47 polymorphism_frequency=9.647e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=3/0 total_cov=38/48 RA 1801 . NC_000913 4626487 0 T C bias_e_value=3607140 bias_p_value=0.777125 consensus_score=255.6 fisher_strand_p_value=0.411765 frequency=1 ks_quality_p_value=1 major_base=C major_cov=34/50 major_frequency=9.882e-01 minor_base=A minor_cov=1/0 new_cov=34/50 polymorphism_frequency=9.882e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/50 RA 1802 . NC_000913 4626521 0 T C bias_e_value=3158110 bias_p_value=0.680385 consensus_score=227.2 fisher_strand_p_value=0.378378 frequency=1 ks_quality_p_value=0.835945 major_base=C major_cov=27/46 major_frequency=9.865e-01 minor_base=T minor_cov=1/0 new_cov=27/46 polymorphism_frequency=9.865e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/0 total_cov=29/46 RA 1803 . NC_000913 4626526 0 A G bias_e_value=4637790 bias_p_value=0.999168 consensus_score=225.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.95949 major_base=G major_cov=30/46 major_frequency=9.870e-01 minor_base=T minor_cov=0/1 new_cov=30/46 polymorphism_frequency=9.870e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/47 RA 1804 . NC_000913 4626565 0 G T consensus_score=224.7 frequency=1 major_base=T major_cov=30/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/42 RA 1805 . NC_000913 4626568 0 G A bias_e_value=3593430 bias_p_value=0.774171 consensus_score=209.0 fisher_strand_p_value=0.408451 frequency=1 ks_quality_p_value=1 major_base=A major_cov=28/42 major_frequency=9.859e-01 minor_base=G minor_cov=1/0 new_cov=28/42 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=30/42 RA 1806 . NC_000913 4626586 0 T C bias_e_value=3899780 bias_p_value=0.840171 consensus_score=204.4 fisher_strand_p_value=0.501006 frequency=1 ks_quality_p_value=0.979795 major_base=C major_cov=31/38 major_frequency=9.718e-01 minor_base=T minor_cov=0/2 new_cov=31/38 polymorphism_frequency=9.718e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=32/41 RA 1807 . NC_000913 4626595 0 T G bias_e_value=4627950 bias_p_value=0.997048 consensus_score=199.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.924157 major_base=G major_cov=31/39 major_frequency=9.859e-01 minor_base=T minor_cov=0/1 new_cov=31/39 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=31/40 RA 1808 . NC_000913 4626601 0 G T consensus_score=229.6 frequency=1 major_base=T major_cov=32/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/41 RA 1809 . NC_000913 4626670 0 C T bias_e_value=4623400 bias_p_value=0.996068 consensus_score=260.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.912641 major_base=T major_cov=39/46 major_frequency=9.770e-01 minor_base=C minor_cov=1/1 new_cov=39/46 polymorphism_frequency=9.770e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=1/1 total_cov=40/48 RA 1810 . NC_000913 4626673 0 G A bias_e_value=2455650 bias_p_value=0.529047 consensus_score=265.2 fisher_strand_p_value=0.2085 frequency=1 ks_quality_p_value=0.980716 major_base=A major_cov=38/47 major_frequency=9.770e-01 minor_base=T minor_cov=2/0 new_cov=38/47 polymorphism_frequency=9.770e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=40/48 RA 1811 . NC_000913 4626784 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=245.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=33/47 major_frequency=9.756e-01 minor_base=C minor_cov=1/1 new_cov=33/47 polymorphism_frequency=9.756e-01 polymorphism_score=-6.6 prediction=consensus ref_cov=1/1 total_cov=36/48 RA 1812 . NC_000913 4626802 0 T C bias_e_value=3711540 bias_p_value=0.799617 consensus_score=260.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.438039 major_base=C major_cov=36/46 major_frequency=9.880e-01 minor_base=T minor_cov=0/1 new_cov=36/46 polymorphism_frequency=9.880e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=37/47 RA 1813 . NC_000913 4626808 0 A C bias_e_value=3953310 bias_p_value=0.851704 consensus_score=276.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.507482 major_base=C major_cov=36/48 major_frequency=9.767e-01 minor_base=A minor_cov=1/1 new_cov=36/48 polymorphism_frequency=9.767e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/1 total_cov=37/49 RA 1814 . NC_000913 4626820 0 A G bias_e_value=2738080 bias_p_value=0.589893 consensus_score=271.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.245214 major_base=G major_cov=36/47 major_frequency=9.881e-01 minor_base=A minor_cov=0/1 new_cov=36/47 polymorphism_frequency=9.881e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=36/48 RA 1815 . NC_000913 4626838 0 A G bias_e_value=4371170 bias_p_value=0.941726 consensus_score=259.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.678644 major_base=G major_cov=34/45 major_frequency=9.875e-01 minor_base=A minor_cov=0/1 new_cov=34/45 polymorphism_frequency=9.875e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=34/46 RA 1816 . NC_000913 4626839 0 C T bias_e_value=3258500 bias_p_value=0.702013 consensus_score=238.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.335594 major_base=T major_cov=34/44 major_frequency=9.873e-01 minor_base=C minor_cov=0/1 new_cov=34/44 polymorphism_frequency=9.873e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=0/1 total_cov=34/46 RA 1817 . NC_000913 4626886 0 C T bias_e_value=4640560 bias_p_value=0.999764 consensus_score=224.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.978365 major_base=T major_cov=30/46 major_frequency=9.870e-01 minor_base=G minor_cov=0/1 new_cov=30/46 polymorphism_frequency=9.870e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=31/48 RA 1818 . NC_000913 4626889 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=224.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=30/47 major_frequency=9.747e-01 minor_base=A minor_cov=1/1 new_cov=30/47 polymorphism_frequency=9.747e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/1 total_cov=31/48 RA 1819 . NC_000913 4626943 0 G C bias_e_value=4641650 bias_p_value=1 consensus_score=207.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999548 major_base=C major_cov=29/37 major_frequency=9.851e-01 minor_base=T minor_cov=0/1 new_cov=29/37 polymorphism_frequency=9.851e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/38 RA 1820 . NC_000913 4627027 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=198.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=30/38 major_frequency=9.855e-01 minor_base=T minor_cov=0/1 new_cov=30/38 polymorphism_frequency=9.855e-01 polymorphism_score=-6.9 prediction=consensus ref_cov=0/1 total_cov=30/40 RA 1821 . NC_000913 4627069 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=207.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=28/39 major_frequency=9.571e-01 minor_base=G minor_cov=1/2 new_cov=28/39 polymorphism_frequency=9.571e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/41 RA 1822 . NC_000913 4627084 0 G A bias_e_value=4640380 bias_p_value=0.999727 consensus_score=202.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.976718 major_base=A major_cov=25/39 major_frequency=9.846e-01 minor_base=T minor_cov=0/1 new_cov=25/39 polymorphism_frequency=9.846e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/40 RA 1823 . NC_000913 4627159 0 C T bias_e_value=3917620 bias_p_value=0.844015 consensus_score=160.0 fisher_strand_p_value=0.499274 frequency=1 ks_quality_p_value=0.994098 major_base=T major_cov=23/28 major_frequency=9.623e-01 minor_base=G minor_cov=0/2 new_cov=23/28 polymorphism_frequency=9.623e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/30 RA 1824 . NC_000913 4627162 0 T A consensus_score=172.5 frequency=1 major_base=A major_cov=23/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/30 RA 1825 . NC_000913 4627213 0 G A consensus_score=195.0 frequency=1 major_base=A major_cov=24/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/36 RA 1826 . NC_000913 4627299 0 A G bias_e_value=3119190 bias_p_value=0.672 consensus_score=153.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.309091 major_base=G major_cov=17/30 major_frequency=9.592e-01 minor_base=A minor_cov=1/1 new_cov=17/30 polymorphism_frequency=9.592e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=1/1 total_cov=18/32 RA 1827 . NC_000913 4627300 0 T A bias_e_value=4247030 bias_p_value=0.914983 consensus_score=154.1 fisher_strand_p_value=0.617087 frequency=1 ks_quality_p_value=1 major_base=A major_cov=17/31 major_frequency=9.231e-01 minor_base=T minor_cov=2/2 new_cov=17/31 polymorphism_frequency=9.231e-01 polymorphism_score=2.0 prediction=consensus ref_cov=2/2 total_cov=19/33 RA 1828 . NC_000913 4627377 0 A G bias_e_value=2959470 bias_p_value=0.63759 consensus_score=172.1 fisher_strand_p_value=0.624412 frequency=1 ks_quality_p_value=0.449883 major_base=G major_cov=20/35 major_frequency=9.322e-01 minor_base=A minor_cov=2/2 new_cov=20/35 polymorphism_frequency=9.322e-01 polymorphism_score=2.2 prediction=consensus ref_cov=2/2 total_cov=22/39 RA 1829 . NC_000913 4627509 0 G C bias_e_value=2648190 bias_p_value=0.570528 consensus_score=125.9 fisher_strand_p_value=0.231707 frequency=1 ks_quality_p_value=1 major_base=C major_cov=18/21 major_frequency=9.512e-01 minor_base=A minor_cov=2/0 new_cov=18/21 polymorphism_frequency=9.512e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/21 RA 1830 . NC_000913 4627512 0 C T consensus_score=131.1 frequency=1 major_base=T major_cov=20/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/21 RA 1831 . NC_000913 4627518 0 C G consensus_score=116.8 frequency=1 major_base=G major_cov=19/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/20 RA 1832 . NC_000913 4627539 0 A G bias_e_value=4631940 bias_p_value=0.997908 consensus_score=109.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.936012 major_base=G major_cov=19/19 major_frequency=9.744e-01 minor_base=T minor_cov=0/1 new_cov=19/19 polymorphism_frequency=9.744e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/20 RA 1833 . NC_000913 4627593 0 G A bias_e_value=3689900 bias_p_value=0.794953 consensus_score=111.9 fisher_strand_p_value=0.432432 frequency=1 ks_quality_p_value=1 major_base=A major_cov=15/21 major_frequency=9.730e-01 minor_base=C minor_cov=1/0 new_cov=15/21 polymorphism_frequency=9.730e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=16/22 RA 1834 . NC_000913 4627626 0 T C bias_e_value=4640990 bias_p_value=0.999856 consensus_score=95.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.983099 major_base=C major_cov=14/18 major_frequency=9.697e-01 minor_base=T minor_cov=0/1 new_cov=14/18 polymorphism_frequency=9.697e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=15/19 RA 1835 . NC_000913 4627629 0 C T consensus_score=100.7 frequency=1 major_base=T major_cov=15/19 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/19 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/19 RA 1836 . NC_000913 4627641 0 C T bias_e_value=4641640 bias_p_value=0.999998 consensus_score=96.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997986 major_base=T major_cov=14/17 major_frequency=9.688e-01 minor_base=G minor_cov=0/1 new_cov=14/17 polymorphism_frequency=9.688e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/18 RA 1837 . NC_000913 4627650 0 T C consensus_score=87.6 frequency=1 major_base=C major_cov=12/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/17 RA 1838 . NC_000913 4627653 0 C T consensus_score=87.0 frequency=1 major_base=T major_cov=12/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/17 RA 1839 . NC_000913 4627668 0 G C consensus_score=82.7 frequency=1 major_base=C major_cov=11/16 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/16 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/16 RA 1840 . NC_000913 4627689 0 T C consensus_score=80.1 frequency=1 major_base=C major_cov=11/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=11/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=11/15 RA 1841 . NC_000913 4627698 0 G A bias_e_value=3716780 bias_p_value=0.800745 consensus_score=81.8 fisher_strand_p_value=0.444444 frequency=1 ks_quality_p_value=0.988669 major_base=A major_cov=11/15 major_frequency=9.630e-01 minor_base=C minor_cov=1/0 new_cov=11/15 polymorphism_frequency=9.630e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/15 RA 1842 . NC_000913 4627818 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=93.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=17/15 major_frequency=9.143e-01 minor_base=A minor_cov=2/1 new_cov=17/15 polymorphism_frequency=9.143e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=2/1 total_cov=19/17 RA 1843 . NC_000913 4627824 0 C T bias_e_value=3882580 bias_p_value=0.836465 consensus_score=105.6 fisher_strand_p_value=0.485714 frequency=1 ks_quality_p_value=1 major_base=T major_cov=18/16 major_frequency=9.714e-01 minor_base=G minor_cov=0/1 new_cov=18/16 polymorphism_frequency=9.714e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/17 RA 1844 . NC_000913 4627833 0 T C bias_e_value=3746830 bias_p_value=0.807219 consensus_score=117.8 fisher_strand_p_value=0.447368 frequency=1 ks_quality_p_value=1 major_base=C major_cov=21/16 major_frequency=9.737e-01 minor_base=. minor_cov=0/1 new_cov=21/16 polymorphism_frequency=9.737e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/0 total_cov=21/17 RA 1845 . NC_000913 4627893 0 G T consensus_score=177.1 frequency=1 major_base=T major_cov=32/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/26 RA 1846 . NC_000913 4627986 0 C G bias_e_value=2444050 bias_p_value=0.526548 consensus_score=131.6 fisher_strand_p_value=0.21041 frequency=1 ks_quality_p_value=0.964349 major_base=G major_cov=23/18 major_frequency=9.535e-01 minor_base=C minor_cov=0/2 new_cov=23/18 polymorphism_frequency=9.535e-01 polymorphism_score=-0.9 prediction=consensus ref_cov=0/2 total_cov=23/20 RA 1847 . NC_000913 4628001 0 T C bias_e_value=2428730 bias_p_value=0.523247 consensus_score=134.0 fisher_strand_p_value=0.200846 frequency=1 ks_quality_p_value=1 major_base=C major_cov=24/18 major_frequency=9.545e-01 minor_base=T minor_cov=0/2 new_cov=24/18 polymorphism_frequency=9.545e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=0/2 total_cov=25/20 RA 1848 . NC_000913 4628007 0 G A bias_e_value=2589640 bias_p_value=0.557913 consensus_score=125.5 fisher_strand_p_value=0.223188 frequency=1 ks_quality_p_value=1 major_base=A major_cov=24/20 major_frequency=9.565e-01 minor_base=G minor_cov=0/2 new_cov=24/20 polymorphism_frequency=9.565e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/2 total_cov=24/22 RA 1849 . NC_000913 4628028 0 C T bias_e_value=1950260 bias_p_value=0.420165 consensus_score=129.9 fisher_strand_p_value=0.191919 frequency=1 ks_quality_p_value=0.742543 major_base=T major_cov=25/18 major_frequency=9.556e-01 minor_base=C minor_cov=0/2 new_cov=25/18 polymorphism_frequency=9.556e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=0/2 total_cov=25/20 RA 1850 . NC_000913 4628082 0 C T bias_e_value=4074010 bias_p_value=0.877707 consensus_score=131.5 fisher_strand_p_value=0.608511 frequency=1 ks_quality_p_value=0.900821 major_base=T major_cov=23/21 major_frequency=9.362e-01 minor_base=C minor_cov=1/2 new_cov=23/21 polymorphism_frequency=9.362e-01 polymorphism_score=-0.0 prediction=consensus ref_cov=1/2 total_cov=24/23 RA 1851 . NC_000913 4628106 0 C T bias_e_value=4517350 bias_p_value=0.97322 consensus_score=144.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.777681 major_base=T major_cov=25/24 major_frequency=9.423e-01 minor_base=C minor_cov=1/2 new_cov=25/24 polymorphism_frequency=9.423e-01 polymorphism_score=-1.5 prediction=consensus ref_cov=1/2 total_cov=27/27 RA 1852 . NC_000913 4628160 0 T C bias_e_value=4298530 bias_p_value=0.926078 consensus_score=124.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.641019 major_base=C major_cov=19/22 major_frequency=9.535e-01 minor_base=T minor_cov=1/1 new_cov=19/22 polymorphism_frequency=9.535e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=1/1 total_cov=20/23 RA 1853 . NC_000913 4628163 0 C T bias_e_value=4634460 bias_p_value=0.998451 consensus_score=118.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.944857 major_base=T major_cov=19/22 major_frequency=9.535e-01 minor_base=C minor_cov=1/1 new_cov=19/22 polymorphism_frequency=9.535e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/1 total_cov=20/23 RA 1854 . NC_000913 4628190 0 T A bias_e_value=4631370 bias_p_value=0.997785 consensus_score=120.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.934181 major_base=A major_cov=21/24 major_frequency=9.574e-01 minor_base=T minor_cov=1/1 new_cov=21/24 polymorphism_frequency=9.574e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/1 total_cov=23/25 RA 1855 . NC_000913 4628208 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=147.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=24/24 major_frequency=9.600e-01 minor_base=G minor_cov=1/1 new_cov=24/24 polymorphism_frequency=9.600e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/1 total_cov=25/25 RA 1856 . NC_000913 4628232 0 A G bias_e_value=4420430 bias_p_value=0.952341 consensus_score=149.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.707596 major_base=G major_cov=28/22 major_frequency=9.804e-01 minor_base=A minor_cov=1/0 new_cov=28/22 polymorphism_frequency=9.804e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/0 total_cov=29/23 RA 1857 . NC_000913 4628238 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=150.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999114 major_base=T major_cov=26/21 major_frequency=9.792e-01 minor_base=C minor_cov=1/0 new_cov=26/21 polymorphism_frequency=9.792e-01 polymorphism_score=-6.1 prediction=consensus ref_cov=1/0 total_cov=27/22 RA 1858 . NC_000913 4628241 0 T C bias_e_value=3926460 bias_p_value=0.845919 consensus_score=137.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.499057 major_base=C major_cov=25/22 major_frequency=9.792e-01 minor_base=T minor_cov=1/0 new_cov=25/22 polymorphism_frequency=9.792e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=27/22 RA 1859 . NC_000913 4628244 0 C T bias_e_value=4579190 bias_p_value=0.986544 consensus_score=135.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.8405 major_base=T major_cov=25/22 major_frequency=9.792e-01 minor_base=C minor_cov=1/0 new_cov=25/22 polymorphism_frequency=9.792e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=27/22 RA 1860 . NC_000913 4628256 0 C T bias_e_value=4558820 bias_p_value=0.982155 consensus_score=141.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.81713 major_base=T major_cov=29/24 major_frequency=9.815e-01 minor_base=C minor_cov=1/0 new_cov=29/24 polymorphism_frequency=9.815e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=30/24 RA 1861 . NC_000913 4628259 0 T C bias_e_value=4640210 bias_p_value=0.999689 consensus_score=165.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.975157 major_base=C major_cov=29/24 major_frequency=9.815e-01 minor_base=T minor_cov=1/0 new_cov=29/24 polymorphism_frequency=9.815e-01 polymorphism_score=-6.4 prediction=consensus ref_cov=1/0 total_cov=30/24 RA 1862 . NC_000913 4628289 0 G T bias_e_value=3898730 bias_p_value=0.839945 consensus_score=151.0 fisher_strand_p_value=0.490566 frequency=1 ks_quality_p_value=1 major_base=T major_cov=25/26 major_frequency=9.623e-01 minor_base=G minor_cov=2/0 new_cov=25/26 polymorphism_frequency=9.623e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=2/0 total_cov=27/26 RA 1863 . NC_000913 4628292 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=142.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=26/26 major_frequency=9.811e-01 minor_base=A minor_cov=1/0 new_cov=26/26 polymorphism_frequency=9.811e-01 polymorphism_score=-6.8 prediction=consensus ref_cov=1/0 total_cov=27/26 RA 1864 . NC_000913 4628304 0 G A bias_e_value=3891790 bias_p_value=0.83845 consensus_score=153.8 fisher_strand_p_value=0.491265 frequency=1 ks_quality_p_value=0.994318 major_base=A major_cov=26/26 major_frequency=9.630e-01 minor_base=G minor_cov=2/0 new_cov=26/26 polymorphism_frequency=9.630e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=2/0 total_cov=28/26 RA 1865 . NC_000913 4628311 0 C T bias_e_value=4634990 bias_p_value=0.998565 consensus_score=162.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.946915 major_base=T major_cov=27/27 major_frequency=9.818e-01 minor_base=C minor_cov=1/0 new_cov=27/27 polymorphism_frequency=9.818e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=1/0 total_cov=28/27 RA 1866 . NC_000913 4628442 0 C G consensus_score=182.4 frequency=1 major_base=G major_cov=28/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/28 RA 1867 . NC_000913 4628463 0 T C bias_e_value=3890660 bias_p_value=0.838206 consensus_score=148.3 fisher_strand_p_value=0.489796 frequency=1 ks_quality_p_value=0.996604 major_base=C major_cov=23/25 major_frequency=9.796e-01 minor_base=A minor_cov=1/0 new_cov=23/25 polymorphism_frequency=9.796e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/25 RA 1868 . NC_000913 4628481 0 A C bias_e_value=4641650 bias_p_value=1 consensus_score=127.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=19/24 major_frequency=9.556e-01 minor_base=A minor_cov=1/1 new_cov=19/24 polymorphism_frequency=9.556e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=1/1 total_cov=20/25 RA 1869 . NC_000913 4628487 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=123.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=19/24 major_frequency=9.773e-01 minor_base=G minor_cov=0/1 new_cov=19/24 polymorphism_frequency=9.773e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/25 RA 1870 . NC_000913 4628493 0 T C bias_e_value=4629450 bias_p_value=0.997371 consensus_score=115.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.928363 major_base=C major_cov=18/23 major_frequency=9.762e-01 minor_base=A minor_cov=0/1 new_cov=18/23 polymorphism_frequency=9.762e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/24 RA 1871 . NC_000913 4628514 0 A G bias_e_value=4641350 bias_p_value=0.999934 consensus_score=119.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.988528 major_base=G major_cov=17/22 major_frequency=9.750e-01 minor_base=C minor_cov=0/1 new_cov=17/22 polymorphism_frequency=9.750e-01 polymorphism_score=-6.1 prediction=consensus ref_cov=0/0 total_cov=17/23 RA 1872 . NC_000913 4628551 0 T C bias_e_value=3862400 bias_p_value=0.832118 consensus_score=104.1 fisher_strand_p_value=0.51417 frequency=1 ks_quality_p_value=0.933047 major_base=C major_cov=15/22 major_frequency=9.487e-01 minor_base=G minor_cov=0/2 new_cov=15/22 polymorphism_frequency=9.487e-01 polymorphism_score=-2.8 prediction=consensus ref_cov=0/0 total_cov=15/24 RA 1873 . NC_000913 4628560 0 T G bias_e_value=4640470 bias_p_value=0.999745 consensus_score=102.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.977497 major_base=G major_cov=15/22 major_frequency=9.737e-01 minor_base=T minor_cov=0/1 new_cov=15/22 polymorphism_frequency=9.737e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=15/23 RA 1874 . NC_000913 4628583 0 G A bias_e_value=4449020 bias_p_value=0.958499 consensus_score=101.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.726094 major_base=A major_cov=13/19 major_frequency=9.697e-01 minor_base=G minor_cov=0/1 new_cov=13/19 polymorphism_frequency=9.697e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=0/1 total_cov=14/21 RA 1875 . NC_000913 4628592 0 T . bias_e_value=3908650 bias_p_value=0.842082 consensus_score=126.4 fisher_strand_p_value=0.500891 frequency=1 ks_quality_p_value=0.985402 major_base=. major_cov=14/18 major_frequency=9.412e-01 minor_base=T minor_cov=0/2 new_cov=14/18 polymorphism_frequency=9.412e-01 polymorphism_score=-0.8 prediction=consensus ref_cov=0/2 total_cov=14/20 RA 1876 . NC_000913 4628668 0 C T bias_e_value=1587570 bias_p_value=0.342026 consensus_score=85.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.105168 major_base=T major_cov=16/15 major_frequency=9.394e-01 minor_base=C minor_cov=1/1 new_cov=16/15 polymorphism_frequency=9.394e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=1/1 total_cov=17/16 RA 1877 . NC_000913 4628678 0 A C bias_e_value=3511370 bias_p_value=0.75649 consensus_score=70.3 fisher_strand_p_value=0.58871 frequency=1 ks_quality_p_value=0.661138 major_base=C major_cov=16/13 major_frequency=9.062e-01 minor_base=A minor_cov=1/2 new_cov=16/13 polymorphism_frequency=9.062e-01 polymorphism_score=-1.1 prediction=consensus ref_cov=1/2 total_cov=17/17 RA 1878 . NC_000913 4628683 0 G A bias_e_value=4063810 bias_p_value=0.875509 consensus_score=78.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.544524 major_base=A major_cov=16/15 major_frequency=9.118e-01 minor_base=G minor_cov=1/2 new_cov=16/15 polymorphism_frequency=9.118e-01 polymorphism_score=0.3 prediction=consensus ref_cov=1/2 total_cov=17/17 RA 1879 . NC_000913 4628699 0 A G bias_e_value=3788710 bias_p_value=0.816241 consensus_score=88.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.458763 major_base=G major_cov=18/15 major_frequency=9.429e-01 minor_base=A minor_cov=1/1 new_cov=18/15 polymorphism_frequency=9.429e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=1/1 total_cov=19/17 RA 1880 . NC_000913 4628707 0 C A bias_e_value=3469650 bias_p_value=0.747504 consensus_score=86.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.379816 major_base=A major_cov=19/15 major_frequency=9.714e-01 minor_base=C minor_cov=1/0 new_cov=19/15 polymorphism_frequency=9.714e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=1/0 total_cov=20/16 RA 1881 . NC_000913 4628710 0 T C bias_e_value=4441720 bias_p_value=0.956926 consensus_score=91.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.72123 major_base=C major_cov=19/15 major_frequency=9.444e-01 minor_base=T minor_cov=1/1 new_cov=19/15 polymorphism_frequency=9.444e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/1 total_cov=20/16 RA 1882 . NC_000913 4628721 0 C T bias_e_value=4589010 bias_p_value=0.988659 consensus_score=110.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.853227 major_base=T major_cov=18/17 major_frequency=9.722e-01 minor_base=C minor_cov=1/0 new_cov=18/17 polymorphism_frequency=9.722e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/0 total_cov=20/17 RA 1883 . NC_000913 4628778 0 A G bias_e_value=4639440 bias_p_value=0.999524 consensus_score=96.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.969312 major_base=G major_cov=20/13 major_frequency=9.429e-01 minor_base=A minor_cov=1/1 new_cov=20/13 polymorphism_frequency=9.429e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/1 total_cov=21/14 RA 1884 . NC_000913 4628779 0 C G bias_e_value=4641620 bias_p_value=0.999994 consensus_score=108.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996543 major_base=G major_cov=20/13 major_frequency=9.429e-01 minor_base=C minor_cov=1/1 new_cov=20/13 polymorphism_frequency=9.429e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=1/1 total_cov=21/14 RA 1885 . NC_000913 4628782 0 T A bias_e_value=4641650 bias_p_value=1 consensus_score=93.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=19/13 major_frequency=9.143e-01 minor_base=T minor_cov=2/1 new_cov=19/13 polymorphism_frequency=9.143e-01 polymorphism_score=0.1 prediction=consensus ref_cov=2/1 total_cov=21/14 RA 1886 . NC_000913 4628785 0 T C bias_e_value=4543160 bias_p_value=0.978782 consensus_score=98.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.8012 major_base=C major_cov=20/13 major_frequency=9.429e-01 minor_base=T minor_cov=1/1 new_cov=20/13 polymorphism_frequency=9.429e-01 polymorphism_score=-2.0 prediction=consensus ref_cov=1/1 total_cov=21/14 RA 1887 . NC_000913 4628802 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=109.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=24/13 major_frequency=9.487e-01 minor_base=G minor_cov=1/1 new_cov=24/13 polymorphism_frequency=9.487e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=1/1 total_cov=25/14 RA 1888 . NC_000913 4628805 0 G T bias_e_value=4640980 bias_p_value=0.999856 consensus_score=110.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.983051 major_base=T major_cov=23/13 major_frequency=9.231e-01 minor_base=G minor_cov=2/1 new_cov=23/13 polymorphism_frequency=9.231e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=2/1 total_cov=25/14 RA 1889 . NC_000913 4628807 0 T G bias_e_value=4631280 bias_p_value=0.997766 consensus_score=122.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.933909 major_base=G major_cov=23/13 major_frequency=9.231e-01 minor_base=T minor_cov=2/1 new_cov=23/13 polymorphism_frequency=9.231e-01 polymorphism_score=0.1 prediction=consensus ref_cov=2/1 total_cov=25/14 RA 1890 . NC_000913 4628831 0 G A bias_e_value=3767820 bias_p_value=0.811741 consensus_score=108.9 fisher_strand_p_value=0.515385 frequency=1 ks_quality_p_value=0.87902 major_base=A major_cov=27/11 major_frequency=9.500e-01 minor_base=G minor_cov=1/1 new_cov=27/11 polymorphism_frequency=9.500e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=1/1 total_cov=28/14 RA 1891 . NC_000913 4628897 0 C T bias_e_value=3538630 bias_p_value=0.762363 consensus_score=151.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.395496 major_base=T major_cov=28/25 major_frequency=9.636e-01 minor_base=C minor_cov=1/1 new_cov=28/25 polymorphism_frequency=9.636e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=1/1 total_cov=29/26 RA 1892 . NC_000913 4628939 0 G A bias_e_value=4641330 bias_p_value=0.99993 consensus_score=149.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.988218 major_base=A major_cov=25/25 major_frequency=9.259e-01 minor_base=G minor_cov=2/2 new_cov=25/25 polymorphism_frequency=9.259e-01 polymorphism_score=2.1 prediction=consensus ref_cov=2/2 total_cov=27/27 RA 1893 . NC_000913 4628984 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=187.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=29/28 major_frequency=9.500e-01 minor_base=A minor_cov=2/1 new_cov=29/28 polymorphism_frequency=9.500e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=2/1 total_cov=31/29 RA 1894 . NC_000913 4628990 0 A G bias_e_value=4312400 bias_p_value=0.929066 consensus_score=187.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.647819 major_base=G major_cov=30/28 major_frequency=9.508e-01 minor_base=A minor_cov=2/1 new_cov=30/28 polymorphism_frequency=9.508e-01 polymorphism_score=-0.4 prediction=consensus ref_cov=2/1 total_cov=32/29 RA 1895 . NC_000913 4629188 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=162.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=26/27 major_frequency=9.815e-01 minor_base=C minor_cov=1/0 new_cov=26/27 polymorphism_frequency=9.815e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/27 RA 1896 . NC_000913 4629281 0 G A consensus_score=186.2 frequency=1 major_base=A major_cov=34/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/28 RA 1897 . NC_000913 4629356 0 C T bias_e_value=3686530 bias_p_value=0.794228 consensus_score=242.7 fisher_strand_p_value=0.495032 frequency=1 ks_quality_p_value=0.8718 major_base=T major_cov=41/39 major_frequency=9.756e-01 minor_base=C minor_cov=2/0 new_cov=41/39 polymorphism_frequency=9.756e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=2/0 total_cov=43/39 RA 1898 . NC_000913 4629377 0 C T bias_e_value=4552850 bias_p_value=0.980868 consensus_score=252.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.810876 major_base=T major_cov=43/39 major_frequency=9.762e-01 minor_base=C minor_cov=1/1 new_cov=43/39 polymorphism_frequency=9.762e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/1 total_cov=46/41 RA 1899 . NC_000913 4629446 0 A G bias_e_value=3707120 bias_p_value=0.798664 consensus_score=302.9 fisher_strand_p_value=0.50099 frequency=1 ks_quality_p_value=0.872045 major_base=G major_cov=54/45 major_frequency=9.802e-01 minor_base=A minor_cov=2/0 new_cov=54/45 polymorphism_frequency=9.802e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=2/0 total_cov=56/45 RA 1900 . NC_000913 4629473 0 C T bias_e_value=4342610 bias_p_value=0.935574 consensus_score=337.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.66323 major_base=T major_cov=59/43 major_frequency=9.808e-01 minor_base=C minor_cov=1/1 new_cov=59/43 polymorphism_frequency=9.808e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/1 total_cov=60/44 RA 1901 . NC_000913 4629476 0 T C bias_e_value=3814610 bias_p_value=0.821822 consensus_score=325.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.465998 major_base=C major_cov=59/43 major_frequency=9.808e-01 minor_base=T minor_cov=1/1 new_cov=59/43 polymorphism_frequency=9.808e-01 polymorphism_score=-3.1 prediction=consensus ref_cov=1/1 total_cov=60/44 RA 1902 . NC_000913 4629515 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=286.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=52/40 major_frequency=9.787e-01 minor_base=A minor_cov=1/1 new_cov=52/40 polymorphism_frequency=9.787e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/1 total_cov=53/41 RA 1903 . NC_000913 4629521 0 G A bias_e_value=4635560 bias_p_value=0.998689 consensus_score=292.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.949225 major_base=A major_cov=52/39 major_frequency=9.785e-01 minor_base=G minor_cov=1/1 new_cov=52/39 polymorphism_frequency=9.785e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/1 total_cov=54/41 RA 1904 . NC_000913 4629524 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=303.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=52/40 major_frequency=9.684e-01 minor_base=A minor_cov=2/1 new_cov=52/40 polymorphism_frequency=9.684e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=2/1 total_cov=54/41 RA 1905 . NC_000913 4629635 0 T C bias_e_value=1640590 bias_p_value=0.353449 consensus_score=270.8 fisher_strand_p_value=0.357143 frequency=1 ks_quality_p_value=0.308823 major_base=C major_cov=54/29 major_frequency=9.881e-01 minor_base=T minor_cov=0/1 new_cov=54/29 polymorphism_frequency=9.881e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=0/1 total_cov=54/30 RA 1906 . NC_000913 4629647 0 C T bias_e_value=3098070 bias_p_value=0.66745 consensus_score=278.2 fisher_strand_p_value=0.344444 frequency=1 ks_quality_p_value=0.886168 major_base=T major_cov=59/30 major_frequency=9.889e-01 minor_base=C minor_cov=0/1 new_cov=59/30 polymorphism_frequency=9.889e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/1 total_cov=59/31 RA 1907 . NC_000913 4629674 0 A G bias_e_value=3784240 bias_p_value=0.815278 consensus_score=303.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.457529 major_base=G major_cov=61/33 major_frequency=9.792e-01 minor_base=A minor_cov=1/1 new_cov=61/33 polymorphism_frequency=9.792e-01 polymorphism_score=-2.8 prediction=consensus ref_cov=1/1 total_cov=62/34 RA 1908 . NC_000913 4629686 0 A T bias_e_value=2037880 bias_p_value=0.439042 consensus_score=299.8 fisher_strand_p_value=0.152368 frequency=1 ks_quality_p_value=1 major_base=T major_cov=57/35 major_frequency=9.787e-01 minor_base=G minor_cov=0/2 new_cov=57/35 polymorphism_frequency=9.787e-01 polymorphism_score=NA prediction=consensus ref_cov=1/1 total_cov=59/38 RA 1909 . NC_000913 4629689 0 T C bias_e_value=2572150 bias_p_value=0.554146 consensus_score=300.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.220686 major_base=C major_cov=58/37 major_frequency=9.794e-01 minor_base=T minor_cov=1/1 new_cov=58/37 polymorphism_frequency=9.794e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=1/1 total_cov=59/38 RA 1910 . NC_000913 4629701 0 T C bias_e_value=3485350 bias_p_value=0.750885 consensus_score=303.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.383325 major_base=C major_cov=58/37 major_frequency=9.794e-01 minor_base=T minor_cov=1/1 new_cov=58/37 polymorphism_frequency=9.794e-01 polymorphism_score=-3.1 prediction=consensus ref_cov=1/1 total_cov=59/39 RA 1911 . NC_000913 4629716 0 A G bias_e_value=3881870 bias_p_value=0.836312 consensus_score=305.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.485502 major_base=G major_cov=61/38 major_frequency=9.802e-01 minor_base=A minor_cov=1/1 new_cov=61/38 polymorphism_frequency=9.802e-01 polymorphism_score=-3.0 prediction=consensus ref_cov=1/1 total_cov=62/40 RA 1912 . NC_000913 4629797 0 A G bias_e_value=3470680 bias_p_value=0.747725 consensus_score=393.6 fisher_strand_p_value=0.636776 frequency=1 ks_quality_p_value=0.596826 major_base=G major_cov=77/47 major_frequency=9.688e-01 minor_base=A minor_cov=2/2 new_cov=77/47 polymorphism_frequency=9.688e-01 polymorphism_score=0.5 prediction=consensus ref_cov=2/2 total_cov=79/50 RA 1913 . NC_000913 4629887 0 A C bias_e_value=3028470 bias_p_value=0.652455 consensus_score=472.9 fisher_strand_p_value=0.406881 frequency=1 ks_quality_p_value=0.719658 major_base=C major_cov=82/63 major_frequency=9.603e-01 minor_base=A minor_cov=2/4 new_cov=82/63 polymorphism_frequency=9.603e-01 polymorphism_score=3.7 prediction=consensus ref_cov=2/4 total_cov=84/67 RA 1914 . NC_000913 4629896 0 T C bias_e_value=3449690 bias_p_value=0.743203 consensus_score=457.6 fisher_strand_p_value=0.661954 frequency=1 ks_quality_p_value=0.567109 major_base=C major_cov=80/67 major_frequency=9.671e-01 minor_base=T minor_cov=2/3 new_cov=80/67 polymorphism_frequency=9.671e-01 polymorphism_score=2.3 prediction=consensus ref_cov=2/3 total_cov=82/70 RA 1915 . NC_000913 4630022 0 T C bias_e_value=2625720 bias_p_value=0.565687 consensus_score=370.2 fisher_strand_p_value=0.49717 frequency=1 ks_quality_p_value=0.459426 major_base=C major_cov=61/65 major_frequency=9.844e-01 minor_base=T minor_cov=0/2 new_cov=61/65 polymorphism_frequency=9.844e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=0/2 total_cov=61/68 RA 1916 . NC_000913 4630106 0 A G bias_e_value=4625860 bias_p_value=0.996598 consensus_score=339.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.918658 major_base=G major_cov=43/59 major_frequency=9.808e-01 minor_base=A minor_cov=1/1 new_cov=43/59 polymorphism_frequency=9.808e-01 polymorphism_score=-3.0 prediction=consensus ref_cov=1/1 total_cov=44/62 RA 1917 . NC_000913 4630238 0 T A bias_e_value=1921910 bias_p_value=0.414057 consensus_score=233.2 fisher_strand_p_value=0.185263 frequency=1 ks_quality_p_value=0.752394 major_base=A major_cov=31/43 major_frequency=9.737e-01 minor_base=T minor_cov=2/0 new_cov=31/43 polymorphism_frequency=9.737e-01 polymorphism_score=-2.0 prediction=consensus ref_cov=2/0 total_cov=33/43 RA 1918 . NC_000913 4630304 0 A G bias_e_value=3086520 bias_p_value=0.664962 consensus_score=97.2 fisher_strand_p_value=0.309957 frequency=1 ks_quality_p_value=0.978023 major_base=G major_cov=15/21 major_frequency=9.000e-01 minor_base=A minor_cov=3/1 new_cov=15/21 polymorphism_frequency=9.000e-01 polymorphism_score=-0.3 prediction=consensus ref_cov=3/1 total_cov=18/25 RA 1919 . NC_000913 4630385 0 G A bias_e_value=3865320 bias_p_value=0.832746 consensus_score=87.7 fisher_strand_p_value=0.484848 frequency=1 ks_quality_p_value=0.991241 major_base=A major_cov=16/15 major_frequency=9.394e-01 minor_base=G minor_cov=0/2 new_cov=16/15 polymorphism_frequency=9.394e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/2 total_cov=17/17 RA 1920 . NC_000913 4630400 0 A G bias_e_value=3509660 bias_p_value=0.756123 consensus_score=88.6 fisher_strand_p_value=0.491979 frequency=1 ks_quality_p_value=0.790338 major_base=G major_cov=15/17 major_frequency=9.412e-01 minor_base=A minor_cov=0/2 new_cov=15/17 polymorphism_frequency=9.412e-01 polymorphism_score=-3.1 prediction=consensus ref_cov=0/2 total_cov=17/20 RA 1921 . NC_000913 4630553 0 A G bias_e_value=4181410 bias_p_value=0.900846 consensus_score=167.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.589135 major_base=G major_cov=27/27 major_frequency=9.643e-01 minor_base=A minor_cov=1/1 new_cov=27/27 polymorphism_frequency=9.643e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=1/1 total_cov=28/28 RA 1922 . NC_000913 4630602 0 C T bias_e_value=4633530 bias_p_value=0.998251 consensus_score=170.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.94144 major_base=T major_cov=32/24 major_frequency=9.655e-01 minor_base=C minor_cov=1/1 new_cov=32/24 polymorphism_frequency=9.655e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/1 total_cov=33/25 RA 1923 . NC_000913 4630603 0 C T bias_e_value=4632950 bias_p_value=0.998125 consensus_score=172.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.939394 major_base=T major_cov=32/23 major_frequency=9.649e-01 minor_base=C minor_cov=1/1 new_cov=32/23 polymorphism_frequency=9.649e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=1/1 total_cov=33/25 RA 1924 . NC_000913 4630615 0 C T bias_e_value=4550750 bias_p_value=0.980417 consensus_score=177.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.808738 major_base=T major_cov=31/26 major_frequency=9.500e-01 minor_base=C minor_cov=2/1 new_cov=31/26 polymorphism_frequency=9.500e-01 polymorphism_score=-1.6 prediction=consensus ref_cov=2/1 total_cov=33/28 RA 1925 . NC_000913 4630837 0 T C bias_e_value=4611980 bias_p_value=0.993607 consensus_score=206.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.889074 major_base=C major_cov=35/34 major_frequency=9.718e-01 minor_base=T minor_cov=1/1 new_cov=35/34 polymorphism_frequency=9.718e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/1 total_cov=36/35 RA 1926 . NC_000913 4630912 0 G A bias_e_value=4315720 bias_p_value=0.929782 consensus_score=178.8 fisher_strand_p_value=0.673289 frequency=1 ks_quality_p_value=0.964629 major_base=A major_cov=33/31 major_frequency=9.143e-01 minor_base=G minor_cov=2/4 new_cov=33/31 polymorphism_frequency=9.143e-01 polymorphism_score=4.2 prediction=consensus ref_cov=2/4 total_cov=35/35 RA 1927 . NC_000913 4630921 0 G A bias_e_value=2313480 bias_p_value=0.498417 consensus_score=177.5 fisher_strand_p_value=0.185741 frequency=1 ks_quality_p_value=1 major_base=A major_cov=35/29 major_frequency=9.275e-01 minor_base=G minor_cov=1/4 new_cov=35/29 polymorphism_frequency=9.275e-01 polymorphism_score=-0.5 prediction=consensus ref_cov=1/4 total_cov=36/35 RA 1928 . NC_000913 4630945 0 C T bias_e_value=3510000 bias_p_value=0.756197 consensus_score=164.8 fisher_strand_p_value=0.600333 frequency=1 ks_quality_p_value=0.647819 major_base=T major_cov=31/27 major_frequency=9.508e-01 minor_base=C minor_cov=1/2 new_cov=31/27 polymorphism_frequency=9.508e-01 polymorphism_score=-0.2 prediction=consensus ref_cov=1/2 total_cov=32/30 RA 1929 . NC_000913 4630960 0 T C bias_e_value=2428700 bias_p_value=0.523241 consensus_score=160.0 fisher_strand_p_value=0.33726 frequency=1 ks_quality_p_value=0.595511 major_base=C major_cov=30/25 major_frequency=9.322e-01 minor_base=T minor_cov=1/3 new_cov=30/25 polymorphism_frequency=9.322e-01 polymorphism_score=-1.5 prediction=consensus ref_cov=1/3 total_cov=31/28 RA 1930 . NC_000913 4630984 0 G T bias_e_value=4328010 bias_p_value=0.932428 consensus_score=155.1 fisher_strand_p_value=0.655673 frequency=1 ks_quality_p_value=1 major_base=T major_cov=29/24 major_frequency=9.138e-01 minor_base=G minor_cov=2/3 new_cov=29/24 polymorphism_frequency=9.138e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=2/3 total_cov=32/27 RA 1931 . NC_000913 4631146 0 G A bias_e_value=3407600 bias_p_value=0.734135 consensus_score=172.9 fisher_strand_p_value=0.366259 frequency=1 ks_quality_p_value=1 major_base=A major_cov=32/29 major_frequency=9.242e-01 minor_base=C minor_cov=4/1 new_cov=32/29 polymorphism_frequency=9.242e-01 polymorphism_score=-5.3 prediction=consensus ref_cov=0/0 total_cov=36/30 RA 1932 . NC_000913 4631245 0 C T bias_e_value=2358460 bias_p_value=0.508109 consensus_score=230.2 fisher_strand_p_value=0.495679 frequency=1 ks_quality_p_value=0.386442 major_base=T major_cov=41/38 major_frequency=9.753e-01 minor_base=C minor_cov=2/0 new_cov=41/38 polymorphism_frequency=9.753e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=2/0 total_cov=44/39 RA 1933 . NC_000913 4631323 0 A T bias_e_value=3258360 bias_p_value=0.701984 consensus_score=250.6 fisher_strand_p_value=0.348709 frequency=1 ks_quality_p_value=0.962312 major_base=T major_cov=38/43 major_frequency=9.529e-01 minor_base=A minor_cov=3/1 new_cov=38/43 polymorphism_frequency=9.529e-01 polymorphism_score=1.3 prediction=consensus ref_cov=3/1 total_cov=41/46 RA 1934 . NC_000913 4633009 0 C A bias_e_value=4622160 bias_p_value=0.995801 consensus_score=264.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.909771 major_base=A major_cov=50/40 major_frequency=9.574e-01 minor_base=C minor_cov=2/2 new_cov=50/40 polymorphism_frequency=9.574e-01 polymorphism_score=1.2 prediction=consensus ref_cov=2/2 total_cov=52/42 RA 1935 . NC_000913 4634882 0 C T bias_e_value=4640210 bias_p_value=0.999689 consensus_score=164.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.975157 major_base=T major_cov=12/41 major_frequency=9.815e-01 minor_base=C minor_cov=0/1 new_cov=12/41 polymorphism_frequency=9.815e-01 polymorphism_score=-6.8 prediction=consensus ref_cov=0/1 total_cov=13/42 RA 1936 . NC_000913 4635658 0 T C bias_e_value=3815640 bias_p_value=0.822043 consensus_score=153.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.466288 major_base=C major_cov=32/17 major_frequency=9.423e-01 minor_base=T minor_cov=2/1 new_cov=32/17 polymorphism_frequency=9.423e-01 polymorphism_score=0.3 prediction=consensus ref_cov=2/1 total_cov=34/18 RA 1937 . NC_000913 4635706 0 C A bias_e_value=4607730 bias_p_value=0.992693 consensus_score=153.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.88157 major_base=A major_cov=33/18 major_frequency=9.107e-01 minor_base=C minor_cov=3/2 new_cov=33/18 polymorphism_frequency=9.107e-01 polymorphism_score=0.1 prediction=consensus ref_cov=3/2 total_cov=36/20 RA 1938 . NC_000913 4635757 0 C T bias_e_value=4578440 bias_p_value=0.986382 consensus_score=185.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.839572 major_base=T major_cov=36/25 major_frequency=9.531e-01 minor_base=C minor_cov=2/1 new_cov=36/25 polymorphism_frequency=9.531e-01 polymorphism_score=-2.0 prediction=consensus ref_cov=2/1 total_cov=38/26 RA 1939 . NC_000913 4635889 0 T C consensus_score=252.7 frequency=1 major_base=C major_cov=41/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/37 RA 1940 . NC_000913 4636139 0 A C bias_e_value=1212040 bias_p_value=0.261122 consensus_score=237.0 fisher_strand_p_value=0.418919 frequency=1 ks_quality_p_value=0.171584 major_base=C major_cov=43/30 major_frequency=9.865e-01 minor_base=A minor_cov=0/1 new_cov=43/30 polymorphism_frequency=9.865e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=43/31 RA 1941 . NC_000913 4636146 0 T C bias_e_value=4640750 bias_p_value=0.999806 consensus_score=207.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.980354 major_base=C major_cov=41/29 major_frequency=9.722e-01 minor_base=T minor_cov=1/1 new_cov=41/29 polymorphism_frequency=9.722e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=1/1 total_cov=42/30 RA 1942 . NC_000913 4636147 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=209.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=39/29 major_frequency=9.577e-01 minor_base=A minor_cov=2/1 new_cov=39/29 polymorphism_frequency=9.577e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=2/1 total_cov=42/30 RA 1943 . NC_000913 4636175 0 C T bias_e_value=2398640 bias_p_value=0.516764 consensus_score=233.8 fisher_strand_p_value=0.445946 frequency=1 ks_quality_p_value=0.441382 major_base=T major_cov=41/32 major_frequency=9.865e-01 minor_base=C minor_cov=0/1 new_cov=41/32 polymorphism_frequency=9.865e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=41/34 RA 1944 . NC_000913 4636180 0 G T bias_e_value=1414130 bias_p_value=0.304661 consensus_score=232.7 fisher_strand_p_value=0.093101 frequency=1 ks_quality_p_value=0.957548 major_base=T major_cov=41/32 major_frequency=9.605e-01 minor_base=G minor_cov=0/3 new_cov=41/32 polymorphism_frequency=9.605e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=0/3 total_cov=41/35 RA 1945 . NC_000913 4636186 0 T C bias_e_value=2322230 bias_p_value=0.500302 consensus_score=237.5 fisher_strand_p_value=0.454545 frequency=1 ks_quality_p_value=0.411097 major_base=C major_cov=42/34 major_frequency=9.870e-01 minor_base=T minor_cov=0/1 new_cov=42/34 polymorphism_frequency=9.870e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=43/35 RA 1946 . NC_000913 4636201 0 G A bias_e_value=2352950 bias_p_value=0.506922 consensus_score=236.5 fisher_strand_p_value=0.453333 frequency=1 ks_quality_p_value=0.420957 major_base=A major_cov=41/33 major_frequency=9.867e-01 minor_base=G minor_cov=0/1 new_cov=41/33 polymorphism_frequency=9.867e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=42/34 RA 1947 . NC_000913 4636309 0 C T bias_e_value=1598540 bias_p_value=0.344391 consensus_score=240.7 fisher_strand_p_value=0.10622 frequency=1 ks_quality_p_value=1 major_base=T major_cov=40/34 major_frequency=9.610e-01 minor_base=G minor_cov=0/3 new_cov=40/34 polymorphism_frequency=9.610e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=42/37 RA 1948 . NC_000913 4636385 0 A T bias_e_value=3956010 bias_p_value=0.852286 consensus_score=200.1 fisher_strand_p_value=0.508341 frequency=1 ks_quality_p_value=1 major_base=T major_cov=38/28 major_frequency=9.706e-01 minor_base=A minor_cov=2/0 new_cov=38/28 polymorphism_frequency=9.706e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=2/0 total_cov=40/28 RA 1949 . NC_000913 4636411 0 A T bias_e_value=3569780 bias_p_value=0.769075 consensus_score=192.3 fisher_strand_p_value=0.402985 frequency=1 ks_quality_p_value=0.999548 major_base=T major_cov=40/26 major_frequency=9.851e-01 minor_base=C minor_cov=0/1 new_cov=40/26 polymorphism_frequency=9.851e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=41/27 RA 1950 . NC_000913 4636466 0 G A bias_e_value=4139470 bias_p_value=0.89181 consensus_score=143.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.572505 major_base=A major_cov=34/17 major_frequency=9.444e-01 minor_base=G minor_cov=2/1 new_cov=34/17 polymorphism_frequency=9.444e-01 polymorphism_score=0.3 prediction=consensus ref_cov=2/1 total_cov=36/21 RA 1951 . NC_000913 4636474 0 T G bias_e_value=3473010 bias_p_value=0.748227 consensus_score=159.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.380564 major_base=G major_cov=36/21 major_frequency=9.661e-01 minor_base=T minor_cov=1/1 new_cov=36/21 polymorphism_frequency=9.661e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=1/1 total_cov=37/22 RA 1952 . NC_000913 4636493 0 T C bias_e_value=3524170 bias_p_value=0.75925 consensus_score=146.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.392154 major_base=C major_cov=31/19 major_frequency=9.434e-01 minor_base=T minor_cov=2/1 new_cov=31/19 polymorphism_frequency=9.434e-01 polymorphism_score=-1.3 prediction=consensus ref_cov=2/1 total_cov=34/21 RA 1953 . NC_000913 4636513 0 A G bias_e_value=4481900 bias_p_value=0.965583 consensus_score=148.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.749381 major_base=G major_cov=32/21 major_frequency=9.636e-01 minor_base=A minor_cov=1/1 new_cov=32/21 polymorphism_frequency=9.636e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/1 total_cov=34/22 RA 1954 . NC_000913 4636516 0 G A bias_e_value=4266820 bias_p_value=0.919245 consensus_score=136.2 fisher_strand_p_value=0.631543 frequency=1 ks_quality_p_value=0.991304 major_base=A major_cov=32/19 major_frequency=9.273e-01 minor_base=G minor_cov=2/2 new_cov=32/19 polymorphism_frequency=9.273e-01 polymorphism_score=-2.1 prediction=consensus ref_cov=2/2 total_cov=34/23 RA 1955 . NC_000913 4636543 0 G A bias_e_value=1816370 bias_p_value=0.39132 consensus_score=181.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.128091 major_base=A major_cov=35/24 major_frequency=9.672e-01 minor_base=G minor_cov=1/1 new_cov=35/24 polymorphism_frequency=9.672e-01 polymorphism_score=-1.8 prediction=consensus ref_cov=1/1 total_cov=36/25 RA 1956 . NC_000913 4636555 0 A G bias_e_value=4298720 bias_p_value=0.926118 consensus_score=188.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.641109 major_base=G major_cov=36/26 major_frequency=9.688e-01 minor_base=A minor_cov=1/1 new_cov=36/26 polymorphism_frequency=9.688e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/1 total_cov=37/27 RA 1957 . NC_000913 4636591 0 C T consensus_score=194.7 frequency=1 major_base=T major_cov=32/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/28 RA 1958 . NC_000913 4636610 0 C T bias_e_value=3894920 bias_p_value=0.839125 consensus_score=179.2 fisher_strand_p_value=0.491833 frequency=1 ks_quality_p_value=0.995086 major_base=T major_cov=28/28 major_frequency=9.655e-01 minor_base=A minor_cov=2/0 new_cov=28/28 polymorphism_frequency=9.655e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=31/28 RA 1959 . NC_000913 4636717 0 T C bias_e_value=4065530 bias_p_value=0.87588 consensus_score=105.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.545135 major_base=C major_cov=17/17 major_frequency=9.714e-01 minor_base=T minor_cov=1/0 new_cov=17/17 polymorphism_frequency=9.714e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=1/0 total_cov=19/17 RA 1960 . NC_000913 4636749 0 A G bias_e_value=3314360 bias_p_value=0.714049 consensus_score=108.2 fisher_strand_p_value=0.60692 frequency=1 ks_quality_p_value=0.571386 major_base=G major_cov=21/19 major_frequency=9.302e-01 minor_base=A minor_cov=1/2 new_cov=21/19 polymorphism_frequency=9.302e-01 polymorphism_score=0.1 prediction=consensus ref_cov=1/2 total_cov=23/21 RA 1961 . NC_000913 4636767 0 C T bias_e_value=3582040 bias_p_value=0.771717 consensus_score=108.9 fisher_strand_p_value=0.575075 frequency=1 ks_quality_p_value=0.705508 major_base=T major_cov=23/17 major_frequency=9.302e-01 minor_base=C minor_cov=1/2 new_cov=23/17 polymorphism_frequency=9.302e-01 polymorphism_score=0.8 prediction=consensus ref_cov=1/2 total_cov=24/20 RA 1962 . NC_000913 4636821 0 G A bias_e_value=4131960 bias_p_value=0.890192 consensus_score=115.4 fisher_strand_p_value=0.569616 frequency=1 ks_quality_p_value=1 major_base=A major_cov=24/17 major_frequency=9.318e-01 minor_base=G minor_cov=1/2 new_cov=24/17 polymorphism_frequency=9.318e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=1/2 total_cov=25/19 RA 1963 . NC_000913 4636827 0 C T bias_e_value=3528180 bias_p_value=0.760112 consensus_score=113.8 fisher_strand_p_value=0.577167 frequency=1 ks_quality_p_value=0.681045 major_base=T major_cov=24/18 major_frequency=9.333e-01 minor_base=C minor_cov=1/2 new_cov=24/18 polymorphism_frequency=9.333e-01 polymorphism_score=-1.6 prediction=consensus ref_cov=1/2 total_cov=25/20 RA 1964 . NC_000913 4636993 0 G T bias_e_value=3263370 bias_p_value=0.703063 consensus_score=161.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.336556 major_base=T major_cov=26/25 major_frequency=9.808e-01 minor_base=G minor_cov=1/0 new_cov=26/25 polymorphism_frequency=9.808e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=1/0 total_cov=27/25 RA 1965 . NC_000913 4637001 0 C T bias_e_value=2232330 bias_p_value=0.480934 consensus_score=157.2 fisher_strand_p_value=0.481481 frequency=1 ks_quality_p_value=0.364553 major_base=T major_cov=25/28 major_frequency=9.815e-01 minor_base=C minor_cov=1/0 new_cov=25/28 polymorphism_frequency=9.815e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=26/28 RA 1966 . NC_000913 4637037 0 A G bias_e_value=3201380 bias_p_value=0.689708 consensus_score=179.7 fisher_strand_p_value=0.492063 frequency=1 ks_quality_p_value=0.659455 major_base=G major_cov=30/31 major_frequency=9.683e-01 minor_base=A minor_cov=2/0 new_cov=30/31 polymorphism_frequency=9.683e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=2/0 total_cov=32/31 RA 1967 . NC_000913 4637133 0 T G bias_e_value=4434660 bias_p_value=0.955405 consensus_score=237.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.71662 major_base=G major_cov=38/35 major_frequency=9.865e-01 minor_base=T minor_cov=1/0 new_cov=38/35 polymorphism_frequency=9.865e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/0 total_cov=39/35 RA 1968 . NC_000913 4637151 0 A G bias_e_value=4638950 bias_p_value=0.999417 consensus_score=216.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.966062 major_base=G major_cov=36/32 major_frequency=9.855e-01 minor_base=A minor_cov=1/0 new_cov=36/32 polymorphism_frequency=9.855e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=1/0 total_cov=37/33 RA 1969 . NC_000913 4637269 0 T C bias_e_value=4641550 bias_p_value=0.999978 consensus_score=219.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.993446 major_base=C major_cov=38/35 major_frequency=9.733e-01 minor_base=T minor_cov=1/1 new_cov=38/35 polymorphism_frequency=9.733e-01 polymorphism_score=-6.1 prediction=consensus ref_cov=1/1 total_cov=39/37 RA 1970 . NC_000913 4637322 0 T C bias_e_value=4636320 bias_p_value=0.998852 consensus_score=223.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.952474 major_base=C major_cov=35/35 major_frequency=9.859e-01 minor_base=T minor_cov=0/1 new_cov=35/35 polymorphism_frequency=9.859e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=0/1 total_cov=35/36 RA 1971 . NC_000913 4637346 0 T C bias_e_value=4621620 bias_p_value=0.995685 consensus_score=213.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.908548 major_base=C major_cov=33/35 major_frequency=9.855e-01 minor_base=T minor_cov=0/1 new_cov=33/35 polymorphism_frequency=9.855e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=0/1 total_cov=34/36 RA 1972 . NC_000913 4637379 0 C T bias_e_value=4641040 bias_p_value=0.999869 consensus_score=206.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.98385 major_base=T major_cov=30/36 major_frequency=9.851e-01 minor_base=G minor_cov=0/1 new_cov=30/36 polymorphism_frequency=9.851e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/37 RA 1973 . NC_000913 4637382 0 C T bias_e_value=4641040 bias_p_value=0.999869 consensus_score=200.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.98385 major_base=T major_cov=30/36 major_frequency=9.851e-01 minor_base=A minor_cov=0/1 new_cov=30/36 polymorphism_frequency=9.851e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/37 RA 1974 . NC_000913 4637385 0 T A bias_e_value=1403610 bias_p_value=0.302395 consensus_score=196.3 fisher_strand_p_value=0.0887238 frequency=1 ks_quality_p_value=0.994245 major_base=A major_cov=27/36 major_frequency=9.545e-01 minor_base=C minor_cov=3/0 new_cov=27/36 polymorphism_frequency=9.545e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=30/37 RA 1975 . NC_000913 4637391 0 T C bias_e_value=4614450 bias_p_value=0.994139 consensus_score=217.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.893705 major_base=C major_cov=31/36 major_frequency=9.853e-01 minor_base=T minor_cov=0/1 new_cov=31/36 polymorphism_frequency=9.853e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=0/1 total_cov=31/38 RA 1976 . NC_000913 4637409 0 A G bias_e_value=4638260 bias_p_value=0.99927 consensus_score=193.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.96203 major_base=G major_cov=24/36 major_frequency=9.677e-01 minor_base=A minor_cov=1/1 new_cov=24/36 polymorphism_frequency=9.677e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/1 total_cov=25/38 RA 1977 . NC_000913 4637412 0 C T consensus_score=192.6 frequency=1 major_base=T major_cov=24/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/38 RA 1978 . NC_000913 4637478 0 C T bias_e_value=3623370 bias_p_value=0.780621 consensus_score=182.4 fisher_strand_p_value=0.416667 frequency=1 ks_quality_p_value=0.997743 major_base=T major_cov=24/35 major_frequency=9.833e-01 minor_base=G minor_cov=1/0 new_cov=24/35 polymorphism_frequency=9.833e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=25/36 RA 1979 . NC_000913 4637481 0 A G bias_e_value=4471370 bias_p_value=0.963314 consensus_score=190.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.741656 major_base=G major_cov=25/34 major_frequency=9.833e-01 minor_base=A minor_cov=0/1 new_cov=25/34 polymorphism_frequency=9.833e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=25/36 RA 1980 . NC_000913 4637487 0 T C bias_e_value=4635770 bias_p_value=0.998733 consensus_score=200.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.950086 major_base=C major_cov=24/38 major_frequency=9.841e-01 minor_base=T minor_cov=0/1 new_cov=24/38 polymorphism_frequency=9.841e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=24/39 RA 1981 . NC_000913 4637523 0 A C bias_e_value=4580120 bias_p_value=0.986743 consensus_score=155.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.84165 major_base=C major_cov=20/34 major_frequency=9.818e-01 minor_base=A minor_cov=0/1 new_cov=20/34 polymorphism_frequency=9.818e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=0/1 total_cov=20/35 RA 1982 . NC_000913 4637553 0 G A bias_e_value=4641130 bias_p_value=0.999887 consensus_score=173.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.98499 major_base=A major_cov=21/36 major_frequency=9.828e-01 minor_base=G minor_cov=0/1 new_cov=21/36 polymorphism_frequency=9.828e-01 polymorphism_score=-6.6 prediction=consensus ref_cov=0/1 total_cov=21/37 RA 1983 . NC_000913 4637577 0 T C consensus_score=171.4 frequency=1 major_base=C major_cov=18/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/37 RA 1984 . NC_000913 4637675 0 C T bias_e_value=3657260 bias_p_value=0.787923 consensus_score=174.8 fisher_strand_p_value=0.428571 frequency=1 ks_quality_p_value=0.989664 major_base=T major_cov=23/32 major_frequency=9.821e-01 minor_base=A minor_cov=1/0 new_cov=23/32 polymorphism_frequency=9.821e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/32 RA 1985 . NC_000913 4637697 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=163.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=22/30 major_frequency=9.811e-01 minor_base=G minor_cov=0/1 new_cov=22/30 polymorphism_frequency=9.811e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/31 RA 1986 . NC_000913 4637742 0 A C bias_e_value=2449420 bias_p_value=0.527704 consensus_score=181.1 fisher_strand_p_value=0.203634 frequency=1 ks_quality_p_value=1 major_base=C major_cov=24/31 major_frequency=9.649e-01 minor_base=A minor_cov=2/0 new_cov=24/31 polymorphism_frequency=9.649e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=26/31 RA 1987 . NC_000913 4637751 0 G A bias_e_value=4641640 bias_p_value=0.999997 consensus_score=178.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997583 major_base=A major_cov=28/29 major_frequency=9.828e-01 minor_base=T minor_cov=1/0 new_cov=28/29 polymorphism_frequency=9.828e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/29 RA 1988 . NC_000913 4637759 0 C T bias_e_value=3841560 bias_p_value=0.827628 consensus_score=170.4 fisher_strand_p_value=0.473684 frequency=1 ks_quality_p_value=1 major_base=T major_cov=30/26 major_frequency=9.825e-01 minor_base=A minor_cov=0/1 new_cov=30/26 polymorphism_frequency=9.825e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/27 RA 1989 . NC_000913 4637766 0 C T bias_e_value=3648560 bias_p_value=0.786047 consensus_score=182.3 fisher_strand_p_value=0.448276 frequency=1 ks_quality_p_value=0.941297 major_base=T major_cov=32/25 major_frequency=9.828e-01 minor_base=G minor_cov=0/1 new_cov=32/25 polymorphism_frequency=9.828e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/26 RA 1990 . NC_000913 4637775 0 C T bias_e_value=3789620 bias_p_value=0.816438 consensus_score=189.0 fisher_strand_p_value=0.459016 frequency=1 ks_quality_p_value=1 major_base=T major_cov=33/27 major_frequency=9.836e-01 minor_base=C minor_cov=0/1 new_cov=33/27 polymorphism_frequency=9.836e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=33/28 RA 1991 . NC_000913 4637814 0 A G consensus_score=220.9 frequency=1 major_base=G major_cov=38/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/32 RA 1992 . NC_000913 4637857 0 T C bias_e_value=4641620 bias_p_value=0.999994 consensus_score=207.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996581 major_base=C major_cov=44/28 major_frequency=9.863e-01 minor_base=G minor_cov=1/0 new_cov=44/28 polymorphism_frequency=9.863e-01 polymorphism_score=-6.4 prediction=consensus ref_cov=0/0 total_cov=45/28 RA 1993 . NC_000913 4637862 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=224.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=43/28 major_frequency=9.861e-01 minor_base=C minor_cov=1/0 new_cov=43/28 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=45/28 RA 1994 . NC_000913 4637896 0 A G bias_e_value=4633940 bias_p_value=0.998339 consensus_score=187.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.942911 major_base=G major_cov=40/25 major_frequency=9.701e-01 minor_base=A minor_cov=1/1 new_cov=40/25 polymorphism_frequency=9.701e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/1 total_cov=42/27 RA 1995 . NC_000913 4637898 0 G C bias_e_value=3545340 bias_p_value=0.76381 consensus_score=198.5 fisher_strand_p_value=0.397059 frequency=1 ks_quality_p_value=1 major_base=C major_cov=41/26 major_frequency=9.853e-01 minor_base=G minor_cov=0/1 new_cov=41/26 polymorphism_frequency=9.853e-01 polymorphism_score=-6.5 prediction=consensus ref_cov=0/1 total_cov=42/27 RA 1996 . NC_000913 4637943 0 T G bias_e_value=3264020 bias_p_value=0.703203 consensus_score=217.3 fisher_strand_p_value=0.432432 frequency=1 ks_quality_p_value=0.778585 major_base=G major_cov=42/31 major_frequency=9.865e-01 minor_base=T minor_cov=0/1 new_cov=42/31 polymorphism_frequency=9.865e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=0/1 total_cov=42/32 RA 1997 . NC_000913 4637976 0 T G bias_e_value=3607160 bias_p_value=0.777128 consensus_score=224.7 fisher_strand_p_value=0.424658 frequency=1 ks_quality_p_value=0.969648 major_base=G major_cov=42/30 major_frequency=9.863e-01 minor_base=T minor_cov=0/1 new_cov=42/30 polymorphism_frequency=9.863e-01 polymorphism_score=-6.4 prediction=consensus ref_cov=0/1 total_cov=42/31 RA 1998 . NC_000913 4638142 0 T C bias_e_value=4634990 bias_p_value=0.998565 consensus_score=165.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.946915 major_base=C major_cov=21/33 major_frequency=9.818e-01 minor_base=T minor_cov=0/1 new_cov=21/33 polymorphism_frequency=9.818e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=21/34 RA 1999 . NC_000913 4638210 0 T C consensus_score=158.6 frequency=1 major_base=C major_cov=22/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/28 RA 2000 . NC_000913 4638212 0 G C consensus_score=161.0 frequency=1 major_base=C major_cov=22/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/28 RA 2001 . NC_000913 4638214 0 C T bias_e_value=4641630 bias_p_value=0.999995 consensus_score=159.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99674 major_base=T major_cov=22/27 major_frequency=9.800e-01 minor_base=G minor_cov=0/1 new_cov=22/27 polymorphism_frequency=9.800e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/28 RA 2002 . NC_000913 4638264 0 G A bias_e_value=3709480 bias_p_value=0.799172 consensus_score=145.5 fisher_strand_p_value=0.4375 frequency=1 ks_quality_p_value=1 major_base=A major_cov=20/27 major_frequency=9.792e-01 minor_base=C minor_cov=1/0 new_cov=20/27 polymorphism_frequency=9.792e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=21/28 RA 2003 . NC_000913 4638282 0 T C bias_e_value=4639690 bias_p_value=0.999577 consensus_score=149.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.97104 major_base=C major_cov=22/27 major_frequency=9.800e-01 minor_base=A minor_cov=0/1 new_cov=22/27 polymorphism_frequency=9.800e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/28 RA 2004 . NC_000913 4638354 0 C T consensus_score=199.5 frequency=1 major_base=T major_cov=24/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/36 RA 2005 . NC_000913 4638532 0 T C consensus_score=187.0 frequency=1 major_base=C major_cov=24/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/32 RA 2006 . NC_000913 4638567 0 A G consensus_score=151.3 frequency=1 major_base=G major_cov=22/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/28 RA 2007 . NC_000913 4638587 0 C T consensus_score=144.2 frequency=1 major_base=T major_cov=21/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/25 RA 2008 . NC_000913 4638600 0 A C bias_e_value=4628270 bias_p_value=0.997117 consensus_score=134.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.925037 major_base=C major_cov=20/22 major_frequency=9.545e-01 minor_base=A minor_cov=1/1 new_cov=20/22 polymorphism_frequency=9.545e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=1/1 total_cov=21/23 RA 2009 . NC_000913 4638735 0 T C bias_e_value=2913610 bias_p_value=0.62771 consensus_score=129.7 fisher_strand_p_value=0.274045 frequency=1 ks_quality_p_value=0.996971 major_base=C major_cov=14/29 major_frequency=9.348e-01 minor_base=T minor_cov=2/1 new_cov=14/29 polymorphism_frequency=9.348e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=2/1 total_cov=16/30 RA 2010 . NC_000913 4638818 0 G C bias_e_value=1574740 bias_p_value=0.339262 consensus_score=100.1 fisher_strand_p_value=0.10655 frequency=1 ks_quality_p_value=0.975536 major_base=C major_cov=10/24 major_frequency=8.947e-01 minor_base=G minor_cov=3/1 new_cov=10/24 polymorphism_frequency=8.947e-01 polymorphism_score=2.0 prediction=consensus ref_cov=3/1 total_cov=13/26 RA 2011 . NC_000913 4638883 0 C T bias_e_value=4641620 bias_p_value=0.999993 consensus_score=114.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996344 major_base=T major_cov=15/24 major_frequency=9.286e-01 minor_base=C minor_cov=1/2 new_cov=15/24 polymorphism_frequency=9.286e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=1/2 total_cov=16/26 RA 2012 . NC_000913 4638885 0 A G bias_e_value=4144180 bias_p_value=0.892823 consensus_score=107.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.574327 major_base=G major_cov=14/24 major_frequency=9.268e-01 minor_base=A minor_cov=1/2 new_cov=14/24 polymorphism_frequency=9.268e-01 polymorphism_score=0.6 prediction=consensus ref_cov=1/2 total_cov=16/26 RA 2013 . NC_000913 4638927 0 C A bias_e_value=4635100 bias_p_value=0.998588 consensus_score=129.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.947325 major_base=A major_cov=18/24 major_frequency=9.545e-01 minor_base=C minor_cov=1/1 new_cov=18/24 polymorphism_frequency=9.545e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=1/1 total_cov=20/25 RA 2014 . NC_000913 4639005 0 G C bias_e_value=4557890 bias_p_value=0.981954 consensus_score=128.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.816136 major_base=C major_cov=20/22 major_frequency=9.333e-01 minor_base=G minor_cov=1/2 new_cov=20/22 polymorphism_frequency=9.333e-01 polymorphism_score=2.9 prediction=consensus ref_cov=1/2 total_cov=21/24 RA 2015 . NC_000913 4639023 0 A G bias_e_value=3166600 bias_p_value=0.682214 consensus_score=116.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.317896 major_base=G major_cov=20/22 major_frequency=9.333e-01 minor_base=A minor_cov=1/2 new_cov=20/22 polymorphism_frequency=9.333e-01 polymorphism_score=0.5 prediction=consensus ref_cov=1/2 total_cov=21/24 RA 2016 . NC_000913 4639053 0 T G bias_e_value=2530000 bias_p_value=0.545066 consensus_score=113.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.21473 major_base=G major_cov=19/21 major_frequency=9.302e-01 minor_base=T minor_cov=1/2 new_cov=19/21 polymorphism_frequency=9.302e-01 polymorphism_score=-0.5 prediction=consensus ref_cov=1/2 total_cov=20/23 RA 2017 . NC_000913 4639217 0 C T consensus_score=107.3 frequency=1 major_base=T major_cov=21/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/14 RA 2018 . NC_000913 4639261 0 A T consensus_score=129.0 frequency=1 major_base=T major_cov=22/19 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/19 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/19 RA 2019 . NC_000913 4639284 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=123.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=19/18 major_frequency=9.737e-01 minor_base=T minor_cov=0/1 new_cov=19/18 polymorphism_frequency=9.737e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/19 RA 2020 . NC_000913 4639299 0 T C consensus_score=98.5 frequency=1 major_base=C major_cov=20/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/23 RA 2021 . NC_000913 4639303 0 T C bias_e_value=4555630 bias_p_value=0.981466 consensus_score=97.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.813754 major_base=C major_cov=18/22 major_frequency=9.756e-01 minor_base=T minor_cov=0/1 new_cov=18/22 polymorphism_frequency=9.756e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=19/23 RA 2022 . NC_000913 4639440 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=111.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=17/24 major_frequency=9.762e-01 minor_base=G minor_cov=0/1 new_cov=17/24 polymorphism_frequency=9.762e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/25 RA 2023 . NC_000913 4639502 0 C T bias_e_value=3774150 bias_p_value=0.813105 consensus_score=130.6 fisher_strand_p_value=0.456522 frequency=1 ks_quality_p_value=0.996143 major_base=T major_cov=20/25 major_frequency=9.783e-01 minor_base=G minor_cov=1/0 new_cov=20/25 polymorphism_frequency=9.783e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/25 RA 2024 . NC_000913 4639510 0 G C bias_e_value=3889660 bias_p_value=0.83799 consensus_score=137.6 fisher_strand_p_value=0.488372 frequency=1 ks_quality_p_value=0.998893 major_base=C major_cov=22/20 major_frequency=9.767e-01 minor_base=T minor_cov=0/1 new_cov=22/20 polymorphism_frequency=9.767e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/21 RA 2025 . NC_000913 4639512 0 G A consensus_score=124.9 frequency=1 major_base=A major_cov=22/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/21 RA 2026 . NC_000913 4639608 0 G A bias_e_value=4144880 bias_p_value=0.892976 consensus_score=143.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.574602 major_base=A major_cov=23/24 major_frequency=9.792e-01 minor_base=G minor_cov=1/0 new_cov=23/24 polymorphism_frequency=9.792e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/0 total_cov=24/24 RA 2027 . NC_000913 4639632 0 A G bias_e_value=4144880 bias_p_value=0.892976 consensus_score=148.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.574602 major_base=G major_cov=25/22 major_frequency=9.792e-01 minor_base=A minor_cov=1/0 new_cov=25/22 polymorphism_frequency=9.792e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=26/22 RA 2028 . NC_000913 4639719 0 C T bias_e_value=2676130 bias_p_value=0.576548 consensus_score=146.8 fisher_strand_p_value=0.235849 frequency=1 ks_quality_p_value=1 major_base=T major_cov=24/27 major_frequency=9.444e-01 minor_base=G minor_cov=3/0 new_cov=24/27 polymorphism_frequency=9.444e-01 polymorphism_score=NA prediction=consensus ref_cov=1/1 total_cov=30/28 RA 2029 . NC_000913 4639764 0 G A bias_e_value=3158970 bias_p_value=0.68057 consensus_score=127.5 fisher_strand_p_value=0.339557 frequency=1 ks_quality_p_value=0.931989 major_base=A major_cov=21/25 major_frequency=9.200e-01 minor_base=G minor_cov=3/1 new_cov=21/25 polymorphism_frequency=9.200e-01 polymorphism_score=-1.5 prediction=consensus ref_cov=3/1 total_cov=27/26 RA 2030 . NC_000913 4639956 0 T C bias_e_value=2346310 bias_p_value=0.50549 consensus_score=251.8 fisher_strand_p_value=0.193119 frequency=1 ks_quality_p_value=0.983695 major_base=C major_cov=33/44 major_frequency=9.747e-01 minor_base=A minor_cov=2/0 new_cov=33/44 polymorphism_frequency=9.747e-01 polymorphism_score=-5.3 prediction=consensus ref_cov=1/0 total_cov=36/44 RA 2031 . NC_000913 4640785 0 C T consensus_score=106.6 frequency=1 major_base=T major_cov=21/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/15 RA 2032 . NC_000913 4640864 0 A G bias_e_value=3769570 bias_p_value=0.812119 consensus_score=101.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.453512 major_base=G major_cov=20/15 major_frequency=9.459e-01 minor_base=A minor_cov=1/1 new_cov=20/15 polymorphism_frequency=9.459e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=1/1 total_cov=21/16 RA 2033 . NC_000913 4640908 0 G T bias_e_value=3925650 bias_p_value=0.845744 consensus_score=111.7 fisher_strand_p_value=0.609205 frequency=1 ks_quality_p_value=0.818779 major_base=T major_cov=24/22 major_frequency=9.388e-01 minor_base=G minor_cov=1/2 new_cov=24/22 polymorphism_frequency=9.388e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=1/2 total_cov=25/24 RA 2034 . NC_000913 4640924 0 A G bias_e_value=1901480 bias_p_value=0.409655 consensus_score=127.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.137166 major_base=G major_cov=23/20 major_frequency=9.556e-01 minor_base=A minor_cov=1/1 new_cov=23/20 polymorphism_frequency=9.556e-01 polymorphism_score=-2.2 prediction=consensus ref_cov=1/1 total_cov=24/21 RA 2035 . NC_000913 4641022 0 G T bias_e_value=3895340 bias_p_value=0.839214 consensus_score=125.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.489542 major_base=T major_cov=21/21 major_frequency=9.333e-01 minor_base=G minor_cov=2/1 new_cov=21/21 polymorphism_frequency=9.333e-01 polymorphism_score=2.3 prediction=consensus ref_cov=2/1 total_cov=24/22 RA 2036 . NC_000913 4641031 0 T A bias_e_value=4640960 bias_p_value=0.999851 consensus_score=130.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.982805 major_base=A major_cov=22/19 major_frequency=9.111e-01 minor_base=T minor_cov=2/2 new_cov=22/19 polymorphism_frequency=9.111e-01 polymorphism_score=0.5 prediction=consensus ref_cov=2/2 total_cov=24/21 RA 2037 . NC_000913 4641131 0 T C bias_e_value=4632950 bias_p_value=0.998125 consensus_score=143.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.939388 major_base=C major_cov=23/24 major_frequency=9.592e-01 minor_base=T minor_cov=1/1 new_cov=23/24 polymorphism_frequency=9.592e-01 polymorphism_score=-2.8 prediction=consensus ref_cov=1/1 total_cov=24/25 RA 2038 . NC_000913 4641208 0 C T bias_e_value=4641300 bias_p_value=0.999924 consensus_score=161.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.987726 major_base=T major_cov=24/29 major_frequency=9.636e-01 minor_base=C minor_cov=1/1 new_cov=24/29 polymorphism_frequency=9.636e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/1 total_cov=25/31 RA 2039 . NC_000913 4641217 0 T A bias_e_value=4641650 bias_p_value=1 consensus_score=174.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=27/30 major_frequency=9.661e-01 minor_base=T minor_cov=1/1 new_cov=27/30 polymorphism_frequency=9.661e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/1 total_cov=28/31 RA 2040 . NC_000913 4641226 0 G A bias_e_value=4641520 bias_p_value=0.999972 consensus_score=161.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.992505 major_base=A major_cov=25/30 major_frequency=9.483e-01 minor_base=G minor_cov=1/2 new_cov=25/30 polymorphism_frequency=9.483e-01 polymorphism_score=-2.1 prediction=consensus ref_cov=1/2 total_cov=26/32 RA 2041 . NC_000913 4641296 0 T C bias_e_value=2501640 bias_p_value=0.538955 consensus_score=189.4 fisher_strand_p_value=0.492063 frequency=1 ks_quality_p_value=0.428364 major_base=C major_cov=32/30 major_frequency=9.688e-01 minor_base=T minor_cov=0/2 new_cov=32/30 polymorphism_frequency=9.688e-01 polymorphism_score=-2.8 prediction=consensus ref_cov=0/2 total_cov=32/32 RA 2042 . NC_000913 4641352 0 G A bias_e_value=2278660 bias_p_value=0.490916 consensus_score=188.0 fisher_strand_p_value=0.47541 frequency=1 ks_quality_p_value=0.381389 major_base=A major_cov=32/28 major_frequency=9.836e-01 minor_base=G minor_cov=0/1 new_cov=32/28 polymorphism_frequency=9.836e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=33/29 RA 2043 . NC_000913 4641382 0 G A bias_e_value=4628010 bias_p_value=0.997062 consensus_score=190.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.924328 major_base=A major_cov=30/30 major_frequency=9.836e-01 minor_base=G minor_cov=0/1 new_cov=30/30 polymorphism_frequency=9.836e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=31/31 RA 2044 . NC_000913 4641428 0 G A bias_e_value=4481340 bias_p_value=0.965461 consensus_score=180.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.748959 major_base=A major_cov=30/30 major_frequency=9.836e-01 minor_base=G minor_cov=0/1 new_cov=30/30 polymorphism_frequency=9.836e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=31/31 RA 2045 . NC_000913 4641439 0 T C bias_e_value=1532370 bias_p_value=0.330136 consensus_score=180.2 fisher_strand_p_value=0.491803 frequency=1 ks_quality_p_value=0.203225 major_base=C major_cov=31/29 major_frequency=9.836e-01 minor_base=T minor_cov=0/1 new_cov=31/29 polymorphism_frequency=9.836e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=0/1 total_cov=31/30 RA 2046 . NC_000913 4641440 0 G A bias_e_value=3654500 bias_p_value=0.787328 consensus_score=176.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.423449 major_base=A major_cov=30/29 major_frequency=9.833e-01 minor_base=G minor_cov=0/1 new_cov=30/29 polymorphism_frequency=9.833e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=31/30 RA 2047 . NC_000913 4641483 0 C T consensus_score=182.2 frequency=1 major_base=T major_cov=31/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/28 RA 2048 . NC_000913 4641488 0 A G bias_e_value=3856810 bias_p_value=0.830913 consensus_score=179.7 fisher_strand_p_value=0.482759 frequency=1 ks_quality_p_value=0.990367 major_base=G major_cov=30/27 major_frequency=9.828e-01 minor_base=T minor_cov=0/1 new_cov=30/27 polymorphism_frequency=9.828e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/28 RA 2049 . NC_000913 4641544 0 A G consensus_score=171.5 frequency=1 major_base=G major_cov=27/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/26 MC 2050 . NC_000913 255892 271761 0 0 left_inside_cov=3 left_outside_cov=55 right_inside_cov=2 right_outside_cov=63 MC 2051 . NC_000913 272052 274954 0 998 left_inside_cov=8 left_outside_cov=9 right_inside_cov=8 right_outside_cov=10 MC 2052 . NC_000913 574787 579183 1003 0 left_inside_cov=8 left_outside_cov=9 right_inside_cov=2 right_outside_cov=35 MC 2053 . NC_000913 1411925 1434984 0 0 left_inside_cov=3 left_outside_cov=44 right_inside_cov=1 right_outside_cov=42 MC 2054 . NC_000913 1978736 1979278 535 0 left_inside_cov=7 left_outside_cov=10 right_inside_cov=0 right_outside_cov=24 MC 2055 . NC_000913 2558699 2565488 0 0 left_inside_cov=0 left_outside_cov=60 right_inside_cov=2 right_outside_cov=63 MC 2056 . NC_000913 3130345 3147606 999 0 left_inside_cov=8 left_outside_cov=9 right_inside_cov=1 right_outside_cov=42 MC 2057 . NC_000913 3423862 3424448 586 0 left_inside_cov=7 left_outside_cov=9 right_inside_cov=8 right_outside_cov=9 MC 2058 . NC_000913 4498182 4499517 1330 0 left_inside_cov=3 left_outside_cov=22 right_inside_cov=0 right_outside_cov=18 MC 2059 . NC_000913 4519240 4525971 0 0 left_inside_cov=1 left_outside_cov=54 right_inside_cov=1 right_outside_cov=53 MC 2060 . NC_000913 4569765 4591621 0 0 left_inside_cov=1 left_outside_cov=73 right_inside_cov=8 right_outside_cov=9 MC 2061 . NC_000913 4621672 4623110 0 0 left_inside_cov=8 left_outside_cov=9 right_inside_cov=8 right_outside_cov=12 JC 2062 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 coverage_minus=19 coverage_plus=19 flanking_left=251 flanking_right=251 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=240 key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0 max_left=250 max_left_minus=227 max_left_plus=250 max_min_left=124 max_min_left_minus=124 max_min_left_plus=122 max_min_right=119 max_min_right_minus=86 max_min_right_plus=119 max_pos_hash_score=482 max_right=246 max_right_minus=246 max_right_plus=244 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.63 new_junction_read_count=38 polymorphism_frequency=1.000e+00 pos_hash_score=36 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=240 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=38 JC 2063 . NC_000913 19796 1 NC_000913 243382 1 0 alignment_overlap=0 coverage_minus=28 coverage_plus=34 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__19796__1__NC_000913__243382__1__0____251__251__1__0 max_left=245 max_left_minus=240 max_left_plus=245 max_min_left=117 max_min_left_minus=110 max_min_left_plus=117 max_min_right=125 max_min_right_minus=125 max_min_right_plus=116 max_pos_hash_score=482 max_right=247 max_right_minus=233 max_right_plus=247 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.06 new_junction_read_count=64 polymorphism_frequency=1.000e+00 pos_hash_score=57 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=231 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=62 JC 2064 . NC_000913 19796 1 NC_000913 362212 -1 0 alignment_overlap=0 coverage_minus=23 coverage_plus=38 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__19796__1__NC_000913__362212__-1__0____251__251__1__0 max_left=238 max_left_minus=236 max_left_plus=238 max_min_left=118 max_min_left_minus=99 max_min_left_plus=118 max_min_right=123 max_min_right_minus=123 max_min_right_plus=122 max_pos_hash_score=482 max_right=231 max_right_minus=218 max_right_plus=231 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.04 new_junction_read_count=63 polymorphism_frequency=1.000e+00 pos_hash_score=56 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=231 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=61 JC 2065 . NC_000913 20703 -1 NC_000913 20704 1 -14 alignment_overlap=-14 coverage_minus=10 coverage_plus=9 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=226 key=NC_000913__20703__-1__NC_000913__20704__1__-14__GCAAGAACCTGCAA__251__251__0__0 max_left=135 max_left_minus=135 max_left_plus=120 max_min_left=95 max_min_left_minus=95 max_min_left_plus=85 max_min_right=112 max_min_right_minus=112 max_min_right_plus=83 max_pos_hash_score=454 max_right=227 max_right_minus=227 max_right_plus=225 neg_log10_pos_hash_p_value=1.6 new_junction_coverage=0.42 new_junction_read_count=24 polymorphism_frequency=9.622e-01 pos_hash_score=18 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=240 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=19 unique_read_sequence=GCAAGAACCTGCAA JC 2066 . NC_000913 26533 -1 NC_000913 4363972 -1 -2 alignment_overlap=-2 coverage_minus=1 coverage_plus=2 flanking_left=251 flanking_right=251 frequency=4.917e-02 junction_possible_overlap_registers=238 key=NC_000913__26533__-1__NC_000913__4363972__-1__-2__CC__251__251__0__0 max_left=246 max_left_minus=154 max_left_plus=246 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=96 max_min_right_minus=95 max_min_right_plus=96 max_pos_hash_score=478 max_right=96 max_right_minus=95 max_right_plus=96 neg_log10_pos_hash_p_value=4.7 new_junction_coverage=0.07 new_junction_read_count=4 polymorphism_frequency=4.917e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.23 side_1_overlap=0 side_1_possible_overlap_registers=240 side_1_read_count=74 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.36 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=82 side_2_redundant=0 total_non_overlap_reads=3 unique_read_sequence=CC JC 2067 . NC_000913 243390 -1 NC_000913 258675 -1 0 alignment_overlap=0 coverage_minus=35 coverage_plus=28 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__243390__-1__NC_000913__258675__-1__0____251__251__0__1 max_left=248 max_left_minus=241 max_left_plus=248 max_min_left=121 max_min_left_minus=121 max_min_left_plus=112 max_min_right=118 max_min_right_minus=101 max_min_right_plus=118 max_pos_hash_score=482 max_right=249 max_right_minus=249 max_right_plus=234 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.08 new_junction_read_count=65 polymorphism_frequency=1.000e+00 pos_hash_score=59 prediction=consensus read_count_offset=9 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=231 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=63 JC 2068 . NC_000913 255891 -1 NC_000913 273955 1 0 alignment_overlap=0 coverage_minus=26 coverage_plus=23 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__255891__-1__NC_000913__273955__1__0____251__251__0__1 max_left=232 max_left_minus=232 max_left_plus=219 max_min_left=123 max_min_left_minus=101 max_min_left_plus=123 max_min_right=116 max_min_right_minus=116 max_min_right_plus=116 max_pos_hash_score=482 max_right=237 max_right_minus=237 max_right_plus=234 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.86 new_junction_read_count=52 polymorphism_frequency=9.455e-01 pos_hash_score=46 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.05 side_1_overlap=0 side_1_possible_overlap_registers=240 side_1_read_count=3 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=49 JC 2069 . NC_000913 258675 -1 NC_000913 362204 1 0 alignment_overlap=0 coverage_minus=30 coverage_plus=34 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__258675__-1__NC_000913__362204__1__0____251__251__1__0 max_left=236 max_left_minus=236 max_left_plus=229 max_min_left=118 max_min_left_minus=98 max_min_left_plus=118 max_min_right=123 max_min_right_minus=115 max_min_right_plus=123 max_pos_hash_score=482 max_right=249 max_right_minus=249 max_right_plus=233 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.08 new_junction_read_count=65 polymorphism_frequency=1.000e+00 pos_hash_score=62 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=231 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=64 JC 2070 . NC_000913 271762 1 NC_000913 4507456 -1 0 alignment_overlap=2 coverage_minus=25 coverage_plus=30 flanking_left=251 flanking_right=251 frequency=NA junction_possible_overlap_registers=238 key=NC_000913__271762__1__NC_000913__4507458__-1__2____251__251__0__0 max_left=244 max_left_minus=244 max_left_plus=238 max_min_left=122 max_min_left_minus=120 max_min_left_plus=122 max_min_right=123 max_min_right_minus=123 max_min_right_plus=110 max_pos_hash_score=478 max_right=242 max_right_minus=232 max_right_plus=242 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.00 new_junction_read_count=60 polymorphism_frequency=NA pos_hash_score=52 prediction=unknown side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=55 JC 2071 . NC_000913 273955 1 NC_000913 820914 1 0 alignment_overlap=0 coverage_minus=18 coverage_plus=22 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__273955__1__NC_000913__820914__1__0____251__251__1__0 max_left=241 max_left_minus=241 max_left_plus=219 max_min_left=116 max_min_left_minus=116 max_min_left_plus=115 max_min_right=123 max_min_right_minus=123 max_min_right_plus=117 max_pos_hash_score=482 max_right=250 max_right_minus=250 max_right_plus=245 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.73 new_junction_read_count=44 polymorphism_frequency=1.000e+00 pos_hash_score=38 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=236 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=40 JC 2072 . NC_000913 275149 -1 NC_000913 579184 1 0 alignment_overlap=0 coverage_minus=16 coverage_plus=16 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__275149__-1__NC_000913__579184__1__0____251__251__1__0 max_left=226 max_left_minus=221 max_left_plus=226 max_min_left=112 max_min_left_minus=112 max_min_left_plus=109 max_min_right=108 max_min_right_minus=108 max_min_right_plus=106 max_pos_hash_score=482 max_right=243 max_right_minus=243 max_right_plus=211 neg_log10_pos_hash_p_value=0.8 new_junction_coverage=0.55 new_junction_read_count=33 polymorphism_frequency=9.429e-01 pos_hash_score=31 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.03 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=2 side_2_redundant=0 total_non_overlap_reads=32 JC 2073 . NC_000913 275149 -1 NC_000913 820917 -1 0 alignment_overlap=1 coverage_minus=20 coverage_plus=27 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=239 key=NC_000913__275149__-1__NC_000913__820918__-1__1____251__251__1__0 max_left=238 max_left_minus=238 max_left_plus=231 max_min_left=113 max_min_left_minus=113 max_min_left_plus=110 max_min_right=120 max_min_right_minus=120 max_min_right_plus=117 max_pos_hash_score=480 max_right=236 max_right_minus=234 max_right_plus=236 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.82 new_junction_read_count=49 polymorphism_frequency=1.000e+00 pos_hash_score=44 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=235 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=47 JC 2074 . NC_000913 290634 1 NC_000913 1105699 1 0 alignment_overlap=0 coverage_minus=30 coverage_plus=35 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__290634__1__NC_000913__1105699__1__0____251__251__1__0 max_left=243 max_left_minus=243 max_left_plus=242 max_min_left=122 max_min_left_minus=122 max_min_left_plus=120 max_min_right=121 max_min_right_minus=118 max_min_right_plus=121 max_pos_hash_score=482 max_right=243 max_right_minus=243 max_right_plus=222 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.11 new_junction_read_count=67 polymorphism_frequency=9.847e-01 pos_hash_score=61 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=231 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=65 JC 2075 . NC_000913 291401 -1 NC_000913 1105707 -1 0 alignment_overlap=0 coverage_minus=18 coverage_plus=21 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__291401__-1__NC_000913__1105707__-1__0____251__251__1__0 max_left=227 max_left_minus=227 max_left_plus=215 max_min_left=124 max_min_left_minus=124 max_min_left_plus=115 max_min_right=121 max_min_right_minus=112 max_min_right_plus=121 max_pos_hash_score=482 max_right=246 max_right_minus=246 max_right_plus=236 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.66 new_junction_read_count=40 polymorphism_frequency=9.747e-01 pos_hash_score=36 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=231 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=39 JC 2076 . NC_000913 293207 1 NC_000913 381260 1 0 alignment_overlap=1 coverage_minus=24 coverage_plus=18 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=239 key=NC_000913__293206__1__NC_000913__381260__1__1____251__251__0__1 max_left=230 max_left_minus=230 max_left_plus=219 max_min_left=119 max_min_left_minus=119 max_min_left_plus=110 max_min_right=120 max_min_right_minus=120 max_min_right_plus=111 max_pos_hash_score=480 max_right=246 max_right_minus=241 max_right_plus=246 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.73 new_junction_read_count=44 polymorphism_frequency=9.773e-01 pos_hash_score=41 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=234 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=42 JC 2077 . NC_000913 293211 -1 NC_000913 382590 -1 0 alignment_overlap=1 coverage_minus=35 coverage_plus=21 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=239 key=NC_000913__293212__-1__NC_000913__382590__-1__1____251__251__0__1 max_left=249 max_left_minus=249 max_left_plus=245 max_min_left=122 max_min_left_minus=107 max_min_left_plus=122 max_min_right=123 max_min_right_minus=123 max_min_right_plus=122 max_pos_hash_score=480 max_right=245 max_right_minus=245 max_right_plus=229 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.95 new_junction_read_count=57 polymorphism_frequency=9.654e-01 pos_hash_score=52 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.03 side_1_overlap=0 side_1_possible_overlap_registers=234 side_1_read_count=2 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=56 JC 2078 . NC_000913 458795 -1 NC_000913 609351 -1 0 alignment_overlap=4 coverage_minus=3 coverage_plus=1 flanking_left=251 flanking_right=251 frequency=1.333e-01 junction_possible_overlap_registers=236 key=NC_000913__458799__-1__NC_000913__609351__-1__4____251__251__0__1 max_left=195 max_left_minus=195 max_left_plus=54 max_min_left=54 max_min_left_minus=54 max_min_left_plus=54 max_min_right=79 max_min_right_minus=79 max_min_right_plus=0 max_pos_hash_score=474 max_right=170 max_right_minus=170 max_right_plus=170 neg_log10_pos_hash_p_value=4.3 new_junction_coverage=0.07 new_junction_read_count=4 polymorphism_frequency=1.333e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.44 side_1_overlap=0 side_1_possible_overlap_registers=236 side_1_read_count=26 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=4 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=4 JC 2079 . NC_000913 491933 -1 NC_000913 492136 -1 0 alignment_overlap=4 coverage_minus=1 coverage_plus=2 flanking_left=251 flanking_right=251 frequency=2.981e-02 junction_possible_overlap_registers=236 key=NC_000913__491933__-1__NC_000913__492140__-1__4____251__251__0__0 max_left=188 max_left_minus=188 max_left_plus=128 max_min_left=1 max_min_left_minus=0 max_min_left_plus=1 max_min_right=119 max_min_right_minus=58 max_min_right_plus=119 max_pos_hash_score=474 max_right=245 max_right_minus=58 max_right_plus=245 neg_log10_pos_hash_p_value=4.7 new_junction_coverage=0.05 new_junction_read_count=3 polymorphism_frequency=2.981e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.73 side_1_overlap=4 side_1_possible_overlap_registers=240 side_1_read_count=104 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.57 side_2_overlap=0 side_2_possible_overlap_registers=236 side_2_read_count=93 side_2_redundant=0 total_non_overlap_reads=3 JC 2080 . NC_000913 725618 -1 NC_000913 726093 1 0 alignment_overlap=8 coverage_minus=1 coverage_plus=2 flanking_left=251 flanking_right=251 frequency=2.907e-02 junction_possible_overlap_registers=232 key=NC_000913__725618__-1__NC_000913__726085__1__8____251__251__0__0 max_left=78 max_left_minus=78 max_left_plus=78 max_min_left=2 max_min_left_minus=0 max_min_left_plus=2 max_min_right=43 max_min_right_minus=43 max_min_right_plus=43 max_pos_hash_score=466 max_right=222 max_right_minus=43 max_right_plus=222 neg_log10_pos_hash_p_value=4.6 new_junction_coverage=0.05 new_junction_read_count=3 polymorphism_frequency=2.907e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.77 side_1_overlap=8 side_1_possible_overlap_registers=240 side_1_read_count=107 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.66 side_2_overlap=0 side_2_possible_overlap_registers=232 side_2_read_count=97 side_2_redundant=0 total_non_overlap_reads=3 JC 2081 . NC_000913 1207790 1 NC_000913 1209619 1 0 alignment_overlap=16 coverage_minus=10 coverage_plus=14 flanking_left=251 flanking_right=251 frequency=4.965e-01 junction_possible_overlap_registers=224 key=NC_000913__1207790__1__NC_000913__1209603__1__16____251__251__0__0 max_left=206 max_left_minus=191 max_left_plus=206 max_min_left=110 max_min_left_minus=110 max_min_left_plus=84 max_min_right=111 max_min_right_minus=108 max_min_right_plus=111 max_pos_hash_score=450 max_right=203 max_right_minus=203 max_right_plus=150 neg_log10_pos_hash_p_value=1.2 new_junction_coverage=0.46 new_junction_read_count=26 polymorphism_frequency=4.965e-01 pos_hash_score=23 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.56 side_1_overlap=16 side_1_possible_overlap_registers=240 side_1_read_count=34 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.37 side_2_overlap=0 side_2_possible_overlap_registers=224 side_2_read_count=21 side_2_redundant=0 total_non_overlap_reads=24 JC 2082 . NC_000913 1207805 -1 NC_000913 1209602 -1 0 alignment_overlap=16 coverage_minus=14 coverage_plus=10 flanking_left=251 flanking_right=251 frequency=4.965e-01 junction_possible_overlap_registers=224 key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____251__251__0__0 max_left=232 max_left_minus=232 max_left_plus=201 max_min_left=112 max_min_left_minus=93 max_min_left_plus=112 max_min_right=105 max_min_right_minus=105 max_min_right_plus=72 max_pos_hash_score=450 max_right=222 max_right_minus=215 max_right_plus=222 neg_log10_pos_hash_p_value=1.1 new_junction_coverage=0.46 new_junction_read_count=26 polymorphism_frequency=4.965e-01 pos_hash_score=24 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.56 side_1_overlap=16 side_1_possible_overlap_registers=240 side_1_read_count=34 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.37 side_2_overlap=0 side_2_possible_overlap_registers=224 side_2_read_count=21 side_2_redundant=0 total_non_overlap_reads=24 JC 2083 . NC_000913 1235323 1 NC_000913 1467910 1 0 alignment_overlap=0 coverage_minus=33 coverage_plus=28 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__1235323__1__NC_000913__1467910__1__0____251__251__0__1 max_left=243 max_left_minus=237 max_left_plus=243 max_min_left=119 max_min_left_minus=119 max_min_left_plus=119 max_min_right=123 max_min_right_minus=123 max_min_right_plus=111 max_pos_hash_score=482 max_right=249 max_right_minus=249 max_right_plus=243 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.01 new_junction_read_count=61 polymorphism_frequency=9.835e-01 pos_hash_score=58 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=235 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=61 JC 2084 . NC_000913 1235327 -1 NC_000913 1469240 -1 0 alignment_overlap=0 coverage_minus=28 coverage_plus=21 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__1235327__-1__NC_000913__1469240__-1__0____251__251__0__1 max_left=249 max_left_minus=246 max_left_plus=249 max_min_left=119 max_min_left_minus=107 max_min_left_plus=119 max_min_right=116 max_min_right_minus=116 max_min_right_plus=95 max_pos_hash_score=482 max_right=248 max_right_minus=248 max_right_plus=235 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.83 new_junction_read_count=50 polymorphism_frequency=9.800e-01 pos_hash_score=46 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=235 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=49 JC 2085 . NC_000913 1291151 1 NC_000913 2290113 -1 0 alignment_overlap=0 coverage_minus=27 coverage_plus=26 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__1291151__1__NC_000913__2290113__-1__0____251__251__0__1 max_left=247 max_left_minus=241 max_left_plus=247 max_min_left=124 max_min_left_minus=124 max_min_left_plus=124 max_min_right=124 max_min_right_minus=121 max_min_right_plus=124 max_pos_hash_score=482 max_right=229 max_right_minus=220 max_right_plus=229 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.91 new_junction_read_count=55 polymorphism_frequency=1.000e+00 pos_hash_score=48 prediction=consensus read_count_offset=4 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=236 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=53 JC 2086 . NC_000913 1291154 -1 NC_000913 2101749 1 0 alignment_overlap=1 coverage_minus=20 coverage_plus=15 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=239 key=NC_000913__1291155__-1__NC_000913__2101749__1__1____251__251__0__1 max_left=245 max_left_minus=245 max_left_plus=244 max_min_left=94 max_min_left_minus=94 max_min_left_plus=37 max_min_right=110 max_min_right_minus=104 max_min_right_plus=110 max_pos_hash_score=480 max_right=241 max_right_minus=223 max_right_plus=241 neg_log10_pos_hash_p_value=0.8 new_junction_coverage=0.65 new_junction_read_count=39 polymorphism_frequency=1.000e+00 pos_hash_score=31 prediction=consensus read_count_offset=4 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=235 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=35 JC 2087 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=10 coverage_plus=15 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=236 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0 max_left=242 max_left_minus=224 max_left_plus=242 max_min_left=102 max_min_left_minus=102 max_min_left_plus=94 max_min_right=113 max_min_right_minus=97 max_min_right_plus=113 max_pos_hash_score=474 max_right=216 max_right_minus=216 max_right_plus=213 neg_log10_pos_hash_p_value=1.1 new_junction_coverage=0.44 new_junction_read_count=26 polymorphism_frequency=9.814e-01 pos_hash_score=25 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=4 side_1_possible_overlap_registers=240 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=236 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=25 JC 2088 . NC_000913 1411924 -1 NC_000913 1434985 1 0 alignment_overlap=26 coverage_minus=15 coverage_plus=24 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=214 key=NC_000913__1411924__-1__NC_000913__1434959__1__26____251__251__0__0 max_left=218 max_left_minus=217 max_left_plus=218 max_min_left=106 max_min_left_minus=72 max_min_left_plus=106 max_min_right=107 max_min_right_minus=106 max_min_right_plus=107 max_pos_hash_score=430 max_right=213 max_right_minus=213 max_right_plus=199 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.76 new_junction_read_count=41 polymorphism_frequency=9.684e-01 pos_hash_score=38 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.05 side_1_overlap=26 side_1_possible_overlap_registers=240 side_1_read_count=3 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=214 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=39 JC 2089 . NC_000913 1469240 -1 NC_000913 1655878 -1 0 alignment_overlap=0 coverage_minus=15 coverage_plus=23 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__1469240__-1__NC_000913__1655878__-1__0____251__251__1__0 max_left=242 max_left_minus=236 max_left_plus=242 max_min_left=96 max_min_left_minus=85 max_min_left_plus=96 max_min_right=97 max_min_right_minus=76 max_min_right_plus=97 max_pos_hash_score=482 max_right=245 max_right_minus=245 max_right_plus=237 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.65 new_junction_read_count=39 polymorphism_frequency=1.000e+00 pos_hash_score=35 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=235 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=38 JC 2090 . NC_000913 1584241 -1 NC_000913 3730285 1 0 alignment_overlap=2 coverage_minus=1 coverage_plus=2 flanking_left=251 flanking_right=251 frequency=5.011e-02 junction_possible_overlap_registers=238 key=NC_000913__1584241__-1__NC_000913__3730283__1__2____251__251__0__0 max_left=83 max_left_minus=83 max_left_plus=83 max_min_left=83 max_min_left_minus=83 max_min_left_plus=83 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=478 max_right=246 max_right_minus=118 max_right_plus=246 neg_log10_pos_hash_p_value=4.7 new_junction_coverage=0.05 new_junction_read_count=3 polymorphism_frequency=5.011e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.53 side_1_overlap=2 side_1_possible_overlap_registers=240 side_1_read_count=32 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.37 side_2_overlap=0 side_2_possible_overlap_registers=238 side_2_read_count=82 side_2_redundant=0 total_non_overlap_reads=3 JC 2091 . NC_000913 1651548 -1 NC_000913 1655874 1 0 alignment_overlap=0 coverage_minus=18 coverage_plus=16 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__1651548__-1__NC_000913__1655874__1__0____251__251__1__0 max_left=249 max_left_minus=245 max_left_plus=249 max_min_left=123 max_min_left_minus=108 max_min_left_plus=123 max_min_right=107 max_min_right_minus=107 max_min_right_plus=99 max_pos_hash_score=482 max_right=220 max_right_minus=220 max_right_plus=168 neg_log10_pos_hash_p_value=0.7 new_junction_coverage=0.63 new_junction_read_count=38 polymorphism_frequency=1.000e+00 pos_hash_score=33 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=235 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=34 JC 2092 . NC_000913 1978502 -1 NC_000913 1979279 1 0 alignment_overlap=8 coverage_minus=10 coverage_plus=13 flanking_left=251 flanking_right=251 frequency=7.680e-01 junction_possible_overlap_registers=232 key=NC_000913__1978502__-1__NC_000913__1979271__1__8____251__251__0__0 max_left=238 max_left_minus=227 max_left_plus=238 max_min_left=104 max_min_left_minus=26 max_min_left_plus=104 max_min_right=100 max_min_right_minus=100 max_min_right_plus=83 max_pos_hash_score=466 max_right=226 max_right_minus=226 max_right_plus=204 neg_log10_pos_hash_p_value=1.3 new_junction_coverage=0.41 new_junction_read_count=24 polymorphism_frequency=7.680e-01 pos_hash_score=22 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.25 side_1_overlap=8 side_1_possible_overlap_registers=240 side_1_read_count=15 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=232 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=23 JC 2093 . NC_000913 1978503 1 NC_000913 2238267 1 0 alignment_overlap=0 coverage_minus=30 coverage_plus=43 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__1978503__1__NC_000913__2238267__1__0____251__251__1__0 max_left=248 max_left_minus=231 max_left_plus=248 max_min_left=123 max_min_left_minus=123 max_min_left_plus=122 max_min_right=119 max_min_right_minus=111 max_min_right_plus=119 max_pos_hash_score=482 max_right=250 max_right_minus=250 max_right_plus=243 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.28 new_junction_read_count=77 polymorphism_frequency=1.000e+00 pos_hash_score=68 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=231 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=73 JC 2094 . NC_000913 1978503 1 NC_000913 2320895 1 0 alignment_overlap=0 coverage_minus=32 coverage_plus=49 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__1978503__1__NC_000913__2320895__1__0____251__251__1__0 max_left=248 max_left_minus=246 max_left_plus=248 max_min_left=123 max_min_left_minus=123 max_min_left_plus=115 max_min_right=122 max_min_right_minus=118 max_min_right_plus=122 max_pos_hash_score=482 max_right=250 max_right_minus=250 max_right_plus=243 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.38 new_junction_read_count=83 polymorphism_frequency=9.876e-01 pos_hash_score=74 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=231 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=81 JC 2095 . NC_000913 1978503 1 NC_000913 4434636 -1 0 alignment_overlap=0 coverage_minus=1 coverage_plus=3 flanking_left=251 flanking_right=251 frequency=1.026e-01 junction_possible_overlap_registers=240 key=NC_000913__1978503__1__NC_000913__4434636__-1__0____251__251__1__0 max_left=175 max_left_minus=175 max_left_plus=175 max_min_left=103 max_min_left_minus=0 max_min_left_plus=103 max_min_right=90 max_min_right_minus=66 max_min_right_plus=90 max_pos_hash_score=482 max_right=147 max_right_minus=66 max_right_plus=147 neg_log10_pos_hash_p_value=4.3 new_junction_coverage=0.07 new_junction_read_count=4 polymorphism_frequency=1.026e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.58 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=35 side_2_redundant=0 total_non_overlap_reads=4 JC 2096 . NC_000913 1979270 -1 NC_000913 2238275 -1 0 alignment_overlap=0 coverage_minus=18 coverage_plus=24 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__1979270__-1__NC_000913__2238275__-1__0____251__251__1__0 max_left=247 max_left_minus=247 max_left_plus=241 max_min_left=116 max_min_left_minus=116 max_min_left_plus=115 max_min_right=124 max_min_right_minus=124 max_min_right_plus=120 max_pos_hash_score=482 max_right=236 max_right_minus=217 max_right_plus=236 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.73 new_junction_read_count=44 polymorphism_frequency=1.000e+00 pos_hash_score=39 prediction=consensus read_count_offset=9 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=231 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=42 JC 2097 . NC_000913 1979270 -1 NC_000913 4569764 -1 0 alignment_overlap=0 coverage_minus=34 coverage_plus=35 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__1979270__-1__NC_000913__4569764__-1__0____251__251__1__0 max_left=243 max_left_minus=243 max_left_plus=235 max_min_left=121 max_min_left_minus=109 max_min_left_plus=121 max_min_right=124 max_min_right_minus=124 max_min_right_plus=123 max_pos_hash_score=482 max_right=248 max_right_minus=234 max_right_plus=248 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.19 new_junction_read_count=72 polymorphism_frequency=9.863e-01 pos_hash_score=65 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=69 JC 2098 . NC_000913 2068941 1 NC_000913 2320770 1 0 alignment_overlap=1 coverage_minus=15 coverage_plus=20 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=239 key=NC_000913__2068941__1__NC_000913__2320769__1__1____251__251__1__0 max_left=249 max_left_minus=249 max_left_plus=245 max_min_left=121 max_min_left_minus=121 max_min_left_plus=118 max_min_right=116 max_min_right_minus=104 max_min_right_plus=116 max_pos_hash_score=480 max_right=134 max_right_minus=134 max_right_plus=131 neg_log10_pos_hash_p_value=0.8 new_junction_coverage=0.62 new_junction_read_count=37 polymorphism_frequency=9.731e-01 pos_hash_score=31 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=234 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=35 JC 2099 . NC_000913 2070271 -1 NC_000913 2320774 -1 0 alignment_overlap=0 coverage_minus=21 coverage_plus=26 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__2070271__-1__NC_000913__2320774__-1__0____251__251__1__0 max_left=241 max_left_minus=232 max_left_plus=241 max_min_left=122 max_min_left_minus=122 max_min_left_plus=121 max_min_right=121 max_min_right_minus=121 max_min_right_plus=121 max_pos_hash_score=482 max_right=232 max_right_minus=232 max_right_plus=228 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.81 new_junction_read_count=49 polymorphism_frequency=9.796e-01 pos_hash_score=45 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=235 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=47 JC 2100 . NC_000913 2170171 1 NC_000913 4519239 -1 -70 alignment_overlap=-70 coverage_minus=13 coverage_plus=13 flanking_left=251 flanking_right=251 frequency=NA junction_possible_overlap_registers=170 key=NC_000913__2170171__1__NC_000913__4519239__-1__-70__CAACACTTTAAAATGCCCTATATAGGGTTAACCAGTAATTATCTGTATGATAGCTTTGAGTTCGGGAGGA__251__251__1__0 max_left=181 max_left_minus=124 max_left_plus=181 max_min_left=89 max_min_left_minus=89 max_min_left_plus=75 max_min_right=60 max_min_right_minus=60 max_min_right_plus=41 max_pos_hash_score=342 max_right=177 max_right_minus=177 max_right_plus=164 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.77 new_junction_read_count=33 polymorphism_frequency=NA pos_hash_score=26 prediction=unknown side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=26 unique_read_sequence=CAACACTTTAAAATGCCCTATATAGGGTTAACCAGTAATTATCTGTATGATAGCTTTGAGTTCGGGAGGA JC 2101 . NC_000913 2288919 1 NC_000913 3147607 1 0 alignment_overlap=0 coverage_minus=21 coverage_plus=20 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__2288919__1__NC_000913__3147607__1__0____251__251__1__0 max_left=243 max_left_minus=243 max_left_plus=232 max_min_left=117 max_min_left_minus=115 max_min_left_plus=117 max_min_right=125 max_min_right_minus=125 max_min_right_plus=104 max_pos_hash_score=482 max_right=236 max_right_minus=224 max_right_plus=236 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.68 new_junction_read_count=41 polymorphism_frequency=9.762e-01 pos_hash_score=40 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=41 JC 2102 . NC_000913 2320903 -1 NC_000913 3583428 1 0 alignment_overlap=0 coverage_minus=11 coverage_plus=11 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__2320903__-1__NC_000913__3583428__1__0____251__251__0__1 max_left=135 max_left_minus=120 max_left_plus=135 max_min_left=120 max_min_left_minus=120 max_min_left_plus=119 max_min_right=106 max_min_right_minus=46 max_min_right_plus=106 max_pos_hash_score=482 max_right=243 max_right_minus=239 max_right_plus=243 neg_log10_pos_hash_p_value=1.4 new_junction_coverage=0.41 new_junction_read_count=25 polymorphism_frequency=9.601e-01 pos_hash_score=21 prediction=consensus read_count_offset=9 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=231 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=22 JC 2103 . NC_000913 2558698 -1 NC_000913 2565489 1 0 alignment_overlap=8 coverage_minus=40 coverage_plus=20 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=232 key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0 max_left=239 max_left_minus=238 max_left_plus=239 max_min_left=114 max_min_left_minus=113 max_min_left_plus=114 max_min_right=112 max_min_right_minus=112 max_min_right_plus=80 max_pos_hash_score=466 max_right=236 max_right_minus=236 max_right_plus=222 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.03 new_junction_read_count=60 polymorphism_frequency=1.000e+00 pos_hash_score=56 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=240 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=232 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=60 JC 2104 . NC_000913 2718617 1 NC_000913 2997691 -1 0 alignment_overlap=0 coverage_minus=22 coverage_plus=25 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__2718617__1__NC_000913__2997691__-1__0____251__251__0__1 max_left=249 max_left_minus=246 max_left_plus=249 max_min_left=124 max_min_left_minus=103 max_min_left_plus=124 max_min_right=111 max_min_right_minus=111 max_min_right_plus=100 max_pos_hash_score=482 max_right=244 max_right_minus=229 max_right_plus=244 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.80 new_junction_read_count=48 polymorphism_frequency=9.592e-01 pos_hash_score=45 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.03 side_1_overlap=0 side_1_possible_overlap_registers=235 side_1_read_count=2 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=47 JC 2105 . NC_000913 2718621 -1 NC_000913 2996361 1 0 alignment_overlap=0 coverage_minus=38 coverage_plus=23 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__2718621__-1__NC_000913__2996361__1__0____251__251__0__1 max_left=243 max_left_minus=243 max_left_plus=230 max_min_left=113 max_min_left_minus=113 max_min_left_plus=90 max_min_right=122 max_min_right_minus=122 max_min_right_plus=118 max_pos_hash_score=482 max_right=244 max_right_minus=244 max_right_plus=228 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.01 new_junction_read_count=61 polymorphism_frequency=9.676e-01 pos_hash_score=55 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.03 side_1_overlap=0 side_1_possible_overlap_registers=235 side_1_read_count=2 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=61 JC 2106 . NC_000913 3187426 -1 NC_000913 3368689 -1 0 alignment_overlap=0 coverage_minus=3 coverage_plus=2 flanking_left=251 flanking_right=251 frequency=8.621e-02 junction_possible_overlap_registers=240 key=NC_000913__3187426__-1__NC_000913__3368689__-1__0____251__251__1__0 max_left=150 max_left_minus=140 max_left_plus=150 max_min_left=47 max_min_left_minus=47 max_min_left_plus=0 max_min_right=109 max_min_right_minus=109 max_min_right_plus=101 max_pos_hash_score=482 max_right=204 max_right_minus=204 max_right_plus=101 neg_log10_pos_hash_p_value=4.0 new_junction_coverage=0.08 new_junction_read_count=5 polymorphism_frequency=8.621e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.88 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=53 side_2_redundant=0 total_non_overlap_reads=5 JC 2107 . NC_000913 3583428 1 NC_000913 4525972 1 0 alignment_overlap=0 coverage_minus=18 coverage_plus=34 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__3583428__1__NC_000913__4525972__1__0____251__251__1__0 max_left=242 max_left_minus=231 max_left_plus=242 max_min_left=115 max_min_left_minus=115 max_min_left_plus=109 max_min_right=120 max_min_right_minus=112 max_min_right_plus=120 max_pos_hash_score=482 max_right=245 max_right_minus=245 max_right_plus=245 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.86 new_junction_read_count=52 polymorphism_frequency=9.811e-01 pos_hash_score=49 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=52 JC 2108 . NC_000913 3583428 1 NC_000913 4541425 1 0 alignment_overlap=0 coverage_minus=20 coverage_plus=31 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__3583428__1__NC_000913__4541425__1__0____251__251__1__0 max_left=249 max_left_minus=238 max_left_plus=249 max_min_left=112 max_min_left_minus=106 max_min_left_plus=112 max_min_right=116 max_min_right_minus=100 max_min_right_plus=116 max_pos_hash_score=482 max_right=249 max_right_minus=249 max_right_plus=246 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.95 new_junction_read_count=57 polymorphism_frequency=9.822e-01 pos_hash_score=48 prediction=consensus read_count_offset=8 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=232 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=51 JC 2109 . NC_000913 3584195 -1 NC_000913 4541432 -1 0 alignment_overlap=0 coverage_minus=27 coverage_plus=38 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__3584195__-1__NC_000913__4541432__-1__0____251__251__1__0 max_left=241 max_left_minus=240 max_left_plus=241 max_min_left=124 max_min_left_minus=107 max_min_left_plus=124 max_min_right=117 max_min_right_minus=95 max_min_right_plus=117 max_pos_hash_score=482 max_right=243 max_right_minus=243 max_right_plus=243 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.14 new_junction_read_count=69 polymorphism_frequency=9.852e-01 pos_hash_score=61 prediction=consensus read_count_offset=8 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=232 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=65 JC 2110 . NC_000913 3652036 1 NC_000913 4348862 1 0 alignment_overlap=0 coverage_minus=1 coverage_plus=2 flanking_left=251 flanking_right=251 frequency=8.824e-02 junction_possible_overlap_registers=240 key=NC_000913__3652036__1__NC_000913__4348862__1__0____251__251__1__0 max_left=146 max_left_minus=146 max_left_plus=138 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=120 max_min_right_minus=105 max_min_right_plus=120 max_pos_hash_score=482 max_right=120 max_right_minus=105 max_right_plus=120 neg_log10_pos_hash_p_value=4.7 new_junction_coverage=0.05 new_junction_read_count=3 polymorphism_frequency=8.824e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.51 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=31 side_2_redundant=0 total_non_overlap_reads=3 JC 2111 . NC_000913 4147156 1 NC_000913 4498181 1 0 alignment_overlap=1 coverage_minus=13 coverage_plus=30 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=239 key=NC_000913__4147155__1__NC_000913__4498181__1__1____251__251__0__1 max_left=245 max_left_minus=245 max_left_plus=239 max_min_left=123 max_min_left_minus=123 max_min_left_plus=114 max_min_right=124 max_min_right_minus=104 max_min_right_plus=124 max_pos_hash_score=480 max_right=217 max_right_minus=145 max_right_plus=217 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.80 new_junction_read_count=48 polymorphism_frequency=9.792e-01 pos_hash_score=40 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=234 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=43 JC 2112 . NC_000913 4147160 -1 NC_000913 4499511 -1 0 alignment_overlap=0 coverage_minus=36 coverage_plus=37 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=240 key=NC_000913__4147160__-1__NC_000913__4499511__-1__0____251__251__0__1 max_left=247 max_left_minus=247 max_left_plus=246 max_min_left=125 max_min_left_minus=125 max_min_left_plus=125 max_min_right=125 max_min_right_minus=125 max_min_right_plus=124 max_pos_hash_score=482 max_right=246 max_right_minus=245 max_right_plus=246 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.33 new_junction_read_count=80 polymorphism_frequency=9.874e-01 pos_hash_score=67 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=235 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=73 JC 2113 . NC_000913 4465172 -1 NC_000913 4465402 1 0 alignment_overlap=8 coverage_minus=32 coverage_plus=49 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=232 key=NC_000913__4465172__-1__NC_000913__4465394__1__8____251__251__0__0 max_left=241 max_left_minus=240 max_left_plus=241 max_min_left=121 max_min_left_minus=121 max_min_left_plus=120 max_min_right=119 max_min_right_minus=116 max_min_right_plus=119 max_pos_hash_score=466 max_right=242 max_right_minus=235 max_right_plus=242 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.44 new_junction_read_count=84 polymorphism_frequency=9.713e-01 pos_hash_score=75 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=8 side_1_possible_overlap_registers=240 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.07 side_2_overlap=0 side_2_possible_overlap_registers=232 side_2_read_count=4 side_2_redundant=0 total_non_overlap_reads=81 JC 2114 . NC_000913 4498181 -1 NC_000913 4499518 1 0 alignment_overlap=6 coverage_minus=8 coverage_plus=8 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=234 key=NC_000913__4498181__-1__NC_000913__4499512__1__6____251__251__0__0 max_left=243 max_left_minus=243 max_left_plus=237 max_min_left=121 max_min_left_minus=60 max_min_left_plus=121 max_min_right=105 max_min_right_minus=105 max_min_right_plus=86 max_pos_hash_score=470 max_right=244 max_right_minus=194 max_right_plus=244 neg_log10_pos_hash_p_value=1.9 new_junction_coverage=0.31 new_junction_read_count=18 polymorphism_frequency=9.249e-01 pos_hash_score=16 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.05 side_1_overlap=6 side_1_possible_overlap_registers=240 side_1_read_count=3 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=234 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=16 JC 2115 . NC_000913 4620827 -1 NC_000913 4620871 1 -66 alignment_overlap=-66 coverage_minus=3 coverage_plus=18 flanking_left=251 flanking_right=251 frequency=1 junction_possible_overlap_registers=174 key=NC_000913__4620827__-1__NC_000913__4620871__1__-66__AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT__251__251__0__0 max_left=171 max_left_minus=163 max_left_plus=171 max_min_left=85 max_min_left_minus=0 max_min_left_plus=85 max_min_right=69 max_min_right_minus=65 max_min_right_plus=69 max_pos_hash_score=350 max_right=174 max_right_minus=65 max_right_plus=174 neg_log10_pos_hash_p_value=1.2 new_junction_coverage=0.50 new_junction_read_count=22 polymorphism_frequency=9.681e-01 pos_hash_score=17 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=240 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=240 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=21 unique_read_sequence=AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT UN 2116 . 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