#=GENOME_DIFF	1.0
#=CREATED	18:52:15 28 Nov 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20231211run9/CV63_S17_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20231211run9/CV63_S17_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20231211run9/CV63_S17_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20231211run9/CV63_S17_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20231211run9/CV63_S17_L001_R2_001.fastq.gz
#=CONVERTED-BASES	184965690
#=CONVERTED-READS	759384
#=INPUT-BASES	184980052
#=INPUT-READS	759518
#=MAPPED-BASES	166443742
#=MAPPED-READS	687761
SNP	1	99	NC_000913	70659	A
SNP	2	100	NC_000913	100946	C
SNP	3	101	NC_000913	244775	A
SNP	4	102	NC_000913	245662	A
SNP	5	103	NC_000913	246747	T
SNP	6	104	NC_000913	248203	A
SNP	7	105	NC_000913	250009	A
SNP	8	106	NC_000913	251629	T
SNP	9	107	NC_000913	365306	A
SUB	10	108,109	NC_000913	480295	2	AA
SNP	11	185	NC_000913	690948	A
SNP	12	186	NC_000913	700038	A
SUB	13	187,188	NC_000913	809217	2	AG
SNP	14	189	NC_000913	968837	A
SNP	15	190	NC_000913	1061935	A
SNP	16	191	NC_000913	1069743	T
DEL	17	192	NC_000913	1093346	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	18	193	NC_000913	1098620	A
SUB	19	194,195	NC_000913	1111727	2	TT
SNP	20	196	NC_000913	1169836	G
SNP	21	197	NC_000913	1189980	G
SNP	22	198	NC_000913	1196220	T
SNP	23	199	NC_000913	1196232	T
SNP	24	200	NC_000913	1196245	C
SNP	25	201	NC_000913	1196247	G
MOB	26	344,349	NC_000913	1271657	IS5	1	4
SNP	27	202	NC_000913	1301992	T
SNP	28	203	NC_000913	1306736	G
SNP	29	204	NC_000913	1310770	G
SNP	30	205	NC_000913	1337394	G
SNP	31	206	NC_000913	1357202	T
SNP	32	207	NC_000913	1358859	C
SNP	33	216	NC_000913	1539947	G
SNP	34	222	NC_000913	1643679	T
SNP	35	223	NC_000913	1652331	C
SNP	36	224	NC_000913	1728754	T
SNP	37	225	NC_000913	1829887	A
SNP	38	226	NC_000913	1894839	C
MOB	39	350,351	NC_000913	1907641	IS5	1	4
SNP	40	227	NC_000913	1978437	A
DEL	41	329,352	NC_000913	1978503	776
SNP	42	228	NC_000913	2040433	A
SNP	43	229	NC_000913	2042171	A
SNP	44	230	NC_000913	2044642	C
DEL	45	231	NC_000913	2111259	1
DEL	46	232,233	NC_000913	2173363	2
SNP	47	234	NC_000913	2173448	T
MOB	48	353,358	NC_000913	2175525	IS1	1	8
SNP	49	235	NC_000913	2339173	A
MOB	50	363,364	NC_000913	2375828	IS186	-1	4
MOB	51	355,356	NC_000913	2468298	IS3	1	3
DEL	52	331,365	NC_000913	2558699	6790
SNP	53	236	NC_000913	2587112	T
SNP	54	237	NC_000913	2661961	T
SNP	55	238	NC_000913	2680490	A
SNP	56	239	NC_000913	2686156	A
SNP	57	240	NC_000913	2724285	A
SNP	58	241	NC_000913	2729586	A
SNP	59	242	NC_000913	2823537	G
SUB	60	243,244	NC_000913	2867454	2	AA
SNP	61	245	NC_000913	2926772	A
SNP	62	246	NC_000913	2939297	T
SNP	63	247	NC_000913	2942663	A
SNP	64	248	NC_000913	3152494	T
MOB	65	359,361	NC_000913	3189672	IS5	-1	4
DEL	66	249	NC_000913	3207549	1
SNP	67	250	NC_000913	3329743	T
MOB	68	367,368	NC_000913	3350556	IS1	-1	8
SNP	69	251	NC_000913	3388041	G
MOB	70	345,348	NC_000913	3429986	IS3	-1	5	ins_end=T
SNP	71	252	NC_000913	3560443	G
INS	72	253	NC_000913	3560455	G
SNP	73	254	NC_000913	3683483	T
SNP	74	255	NC_000913	3707878	G
SNP	75	256	NC_000913	3707883	A
SNP	76	257	NC_000913	3707947	A
SNP	77	258	NC_000913	3725176	G
DEL	78	372	NC_000913	3755733	3
INS	79	259	NC_000913	3815883	C
MOB	80	369,371	NC_000913	3888869	IS1	1	9
MOB	81	360,362	NC_000913	3902169	IS5	1	4
SNP	82	261	NC_000913	4154691	A
SNP	83	262	NC_000913	4182576	G
SNP	84	263	NC_000913	4182782	T
DEL	85	264	NC_000913	4212973	1
SNP	86	265	NC_000913	4220685	G
SNP	87	266	NC_000913	4223638	C
SNP	88	267	NC_000913	4287464	A
INS	89	268,269	NC_000913	4296381	GC
SNP	90	270	NC_000913	4325644	T
SNP	91	272	NC_000913	4473900	T
SNP	92	273	NC_000913	4475493	C
SNP	93	274	NC_000913	4510238	G
SNP	94	275	NC_000913	4532409	G
MOB	95	354,370	NC_000913	4542469	IS1	1	9
SNP	96	276	NC_000913	4546601	T
SNP	97	277	NC_000913	4636925	C
SNP	98	278	NC_000913	4638240	A
RA	99	.	NC_000913	70659	0	G	A	consensus_score=67.7	frequency=1	major_base=A	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	100	.	NC_000913	100946	0	T	C	bias_e_value=4641550	bias_p_value=0.999977	consensus_score=171.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993236	major_base=C	major_cov=23/28	major_frequency=9.808e-01	minor_base=T	minor_cov=0/1	new_cov=23/28	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=23/29
RA	101	.	NC_000913	244775	0	G	A	bias_e_value=3603480	bias_p_value=0.776336	consensus_score=116.5	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.867407	major_base=A	major_cov=17/20	major_frequency=9.737e-01	minor_base=G	minor_cov=1/0	new_cov=17/20	polymorphism_frequency=9.737e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=18/20
RA	102	.	NC_000913	245662	0	G	A	bias_e_value=2317620	bias_p_value=0.499308	consensus_score=42.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.18627	major_base=A	major_cov=8/8	major_frequency=8.889e-01	minor_base=G	minor_cov=1/1	new_cov=8/8	polymorphism_frequency=8.889e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=1/1	total_cov=9/9
RA	103	.	NC_000913	246747	0	G	T	bias_e_value=2240210	bias_p_value=0.482633	consensus_score=59.6	fisher_strand_p_value=0.190476	frequency=1	ks_quality_p_value=0.92664	major_base=T	major_cov=17/3	major_frequency=9.524e-01	minor_base=G	minor_cov=0/1	new_cov=17/3	polymorphism_frequency=9.524e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/1	total_cov=17/4
RA	104	.	NC_000913	248203	0	G	A	bias_e_value=4641440	bias_p_value=0.999955	consensus_score=148.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990531	major_base=A	major_cov=25/18	major_frequency=9.773e-01	minor_base=C	minor_cov=1/0	new_cov=25/18	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=26/19
RA	105	.	NC_000913	250009	0	G	A	bias_e_value=2924480	bias_p_value=0.630051	consensus_score=127.1	fisher_strand_p_value=0.289474	frequency=1	ks_quality_p_value=0.95008	major_base=A	major_cov=10/27	major_frequency=9.737e-01	minor_base=G	minor_cov=1/0	new_cov=10/27	polymorphism_frequency=9.737e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=11/28
RA	106	.	NC_000913	251629	0	C	T	bias_e_value=3995880	bias_p_value=0.860875	consensus_score=144.7	fisher_strand_p_value=0.521277	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/28	major_frequency=9.583e-01	minor_base=G	minor_cov=0/2	new_cov=18/28	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/30
RA	107	.	NC_000913	365306	0	G	A	consensus_score=15.5	frequency=1	major_base=A	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	108	.	NC_000913	480295	0	G	A	bias_e_value=4641570	bias_p_value=0.999983	consensus_score=56.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994169	major_base=A	major_cov=8/10	major_frequency=9.474e-01	minor_base=G	minor_cov=0/1	new_cov=8/10	polymorphism_frequency=9.474e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=8/11
RA	109	.	NC_000913	480296	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=56.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=8/10	major_frequency=9.474e-01	minor_base=G	minor_cov=0/1	new_cov=8/10	polymorphism_frequency=9.474e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/1	total_cov=8/11
RA	110	.	NC_000913	566173	0	C	G	bias_e_value=4600930	bias_p_value=0.991228	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.0	fisher_strand_p_value=1	frequency=5.780e-01	ks_quality_p_value=0.870502	major_base=G	major_cov=39/24	major_frequency=5.780e-01	minor_base=C	minor_cov=28/18	new_cov=39/24	polymorphism_frequency=5.780e-01	polymorphism_score=158.3	prediction=polymorphism	ref_cov=28/18	total_cov=67/43
RA	111	.	NC_000913	566205	0	T	C	bias_e_value=4641600	bias_p_value=0.999988	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.8	fisher_strand_p_value=1	frequency=5.804e-01	ks_quality_p_value=0.995096	major_base=C	major_cov=40/25	major_frequency=5.804e-01	minor_base=T	minor_cov=29/18	new_cov=40/25	polymorphism_frequency=5.804e-01	polymorphism_score=130.7	prediction=polymorphism	ref_cov=29/18	total_cov=69/44
RA	112	.	NC_000913	566245	0	G	A	bias_e_value=4397880	bias_p_value=0.947482	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.0	fisher_strand_p_value=0.693933	frequency=6.071e-01	ks_quality_p_value=1	major_base=A	major_cov=42/26	major_frequency=6.071e-01	minor_base=G	minor_cov=25/19	new_cov=42/26	polymorphism_frequency=6.071e-01	polymorphism_score=110.7	prediction=polymorphism	ref_cov=25/19	total_cov=67/46
RA	113	.	NC_000913	566277	0	C	T	bias_e_value=3714120	bias_p_value=0.800173	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.2	fisher_strand_p_value=0.438713	frequency=5.929e-01	ks_quality_p_value=1	major_base=T	major_cov=41/26	major_frequency=5.929e-01	minor_base=C	minor_cov=24/22	new_cov=41/26	polymorphism_frequency=5.929e-01	polymorphism_score=121.6	prediction=polymorphism	ref_cov=24/22	total_cov=65/48
RA	114	.	NC_000913	566323	0	C	T	bias_e_value=3981180	bias_p_value=0.857708	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.3	fisher_strand_p_value=0.535332	frequency=5.269e-01	ks_quality_p_value=0.964728	major_base=T	major_cov=30/19	major_frequency=5.269e-01	minor_base=C	minor_cov=24/20	new_cov=30/19	polymorphism_frequency=5.269e-01	polymorphism_score=117.6	prediction=polymorphism	ref_cov=24/20	total_cov=55/39
RA	115	.	NC_000913	566326	0	T	C	bias_e_value=4572720	bias_p_value=0.985148	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.3	fisher_strand_p_value=0.832678	frequency=5.326e-01	ks_quality_p_value=1	major_base=C	major_cov=30/19	major_frequency=5.326e-01	minor_base=T	minor_cov=25/18	new_cov=30/19	polymorphism_frequency=5.326e-01	polymorphism_score=119.7	prediction=polymorphism	ref_cov=25/18	total_cov=55/39
RA	116	.	NC_000913	566332	0	T	G	bias_e_value=3651190	bias_p_value=0.786614	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.4	fisher_strand_p_value=0.520902	frequency=5.111e-01	ks_quality_p_value=0.811321	major_base=G	major_cov=29/17	major_frequency=5.111e-01	minor_base=T	minor_cov=24/20	new_cov=29/17	polymorphism_frequency=5.111e-01	polymorphism_score=107.8	prediction=polymorphism	ref_cov=24/20	total_cov=53/37
RA	117	.	NC_000913	566356	0	T	C	bias_e_value=2472840	bias_p_value=0.532751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.9	fisher_strand_p_value=0.603391	frequency=3.968e-01	ks_quality_p_value=0.342765	major_base=T	major_cov=21/17	major_frequency=6.032e-01	minor_base=C	minor_cov=16/9	new_cov=16/9	polymorphism_frequency=3.968e-01	polymorphism_score=65.7	prediction=polymorphism	ref_cov=21/17	total_cov=37/26
RA	118	.	NC_000913	566414	0	A	G	bias_e_value=2307050	bias_p_value=0.497031	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.1	fisher_strand_p_value=0.514437	frequency=2.400e-01	ks_quality_p_value=0.359458	major_base=A	major_cov=17/21	major_frequency=7.600e-01	minor_base=G	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.400e-01	polymorphism_score=28.5	prediction=polymorphism	ref_cov=17/21	total_cov=24/27
RA	119	.	NC_000913	566435	0	G	A	bias_e_value=244551	bias_p_value=0.0526862	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.6	fisher_strand_p_value=0.75726	frequency=2.593e-01	ks_quality_p_value=0.0122481	major_base=G	major_cov=17/23	major_frequency=7.407e-01	minor_base=A	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=2.593e-01	polymorphism_score=34.1	prediction=polymorphism	ref_cov=17/23	total_cov=24/30
RA	120	.	NC_000913	566444	0	T	C	bias_e_value=3315780	bias_p_value=0.714353	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.3	fisher_strand_p_value=1	frequency=3.226e-01	ks_quality_p_value=0.347074	major_base=T	major_cov=18/24	major_frequency=6.774e-01	minor_base=C	minor_cov=8/12	new_cov=8/12	polymorphism_frequency=3.226e-01	polymorphism_score=49.2	prediction=polymorphism	ref_cov=18/24	total_cov=26/36
RA	121	.	NC_000913	566451	0	T	C	bias_e_value=4060710	bias_p_value=0.874842	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.8	fisher_strand_p_value=0.593945	frequency=4.000e-01	ks_quality_p_value=0.914947	major_base=T	major_cov=15/21	major_frequency=6.000e-01	minor_base=C	minor_cov=8/16	new_cov=8/16	polymorphism_frequency=4.000e-01	polymorphism_score=59.8	prediction=polymorphism	ref_cov=15/21	total_cov=24/39
RA	122	.	NC_000913	566463	0	T	C	bias_e_value=2598780	bias_p_value=0.559882	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.0	fisher_strand_p_value=0.634307	frequency=4.306e-01	ks_quality_p_value=0.353936	major_base=T	major_cov=17/24	major_frequency=5.694e-01	minor_base=C	minor_cov=11/20	new_cov=11/20	polymorphism_frequency=4.306e-01	polymorphism_score=86.6	prediction=polymorphism	ref_cov=17/24	total_cov=28/44
RA	123	.	NC_000913	566468	0	C	T	bias_e_value=4638840	bias_p_value=0.999394	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.7	fisher_strand_p_value=1	frequency=4.459e-01	ks_quality_p_value=0.965377	major_base=C	major_cov=16/25	major_frequency=5.541e-01	minor_base=T	minor_cov=12/21	new_cov=12/21	polymorphism_frequency=4.459e-01	polymorphism_score=91.4	prediction=polymorphism	ref_cov=16/25	total_cov=28/47
RA	124	.	NC_000913	566492	0	G	T	bias_e_value=857167	bias_p_value=0.184669	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.1	fisher_strand_p_value=0.514832	frequency=4.884e-01	ks_quality_p_value=0.0874819	major_base=G	major_cov=19/25	major_frequency=5.116e-01	minor_base=T	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=4.884e-01	polymorphism_score=117.4	prediction=polymorphism	ref_cov=19/25	total_cov=34/52
RA	125	.	NC_000913	566493	0	G	A	bias_e_value=3657350	bias_p_value=0.787941	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.7	fisher_strand_p_value=0.660211	frequency=4.881e-01	ks_quality_p_value=0.642466	major_base=G	major_cov=18/25	major_frequency=5.119e-01	minor_base=A	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=4.881e-01	polymorphism_score=121.7	prediction=polymorphism	ref_cov=18/25	total_cov=34/52
RA	126	.	NC_000913	566498	0	C	T	bias_e_value=2051290	bias_p_value=0.441931	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.2	fisher_strand_p_value=0.659686	frequency=4.762e-01	ks_quality_p_value=0.233304	major_base=C	major_cov=19/25	major_frequency=5.238e-01	minor_base=T	minor_cov=15/25	new_cov=15/25	polymorphism_frequency=4.762e-01	polymorphism_score=113.7	prediction=polymorphism	ref_cov=19/25	total_cov=34/51
RA	127	.	NC_000913	566510	0	G	C	bias_e_value=1733930	bias_p_value=0.373559	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.6	fisher_strand_p_value=0.827191	frequency=4.588e-01	ks_quality_p_value=0.144572	major_base=G	major_cov=19/27	major_frequency=5.412e-01	minor_base=C	minor_cov=15/24	new_cov=15/24	polymorphism_frequency=4.588e-01	polymorphism_score=138.4	prediction=polymorphism	ref_cov=19/27	total_cov=34/53
RA	128	.	NC_000913	566513	0	C	T	bias_e_value=378583	bias_p_value=0.0815622	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.0	fisher_strand_p_value=0.825789	frequency=4.767e-01	ks_quality_p_value=0.0191997	major_base=C	major_cov=18/27	major_frequency=5.233e-01	minor_base=T	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=4.767e-01	polymorphism_score=115.5	prediction=polymorphism	ref_cov=18/27	total_cov=34/53
RA	129	.	NC_000913	566519	0	T	C	bias_e_value=847205	bias_p_value=0.182522	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.7	fisher_strand_p_value=0.663893	frequency=4.659e-01	ks_quality_p_value=0.0667998	major_base=T	major_cov=20/27	major_frequency=5.341e-01	minor_base=C	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=4.659e-01	polymorphism_score=110.5	prediction=polymorphism	ref_cov=20/27	total_cov=35/54
RA	130	.	NC_000913	566522	0	C	A	bias_e_value=2344520	bias_p_value=0.505106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.7	fisher_strand_p_value=0.667981	frequency=4.607e-01	ks_quality_p_value=0.284049	major_base=C	major_cov=20/28	major_frequency=5.393e-01	minor_base=A	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=4.607e-01	polymorphism_score=110.0	prediction=polymorphism	ref_cov=20/28	total_cov=35/54
RA	131	.	NC_000913	566528	0	A	G	bias_e_value=623197	bias_p_value=0.134262	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.5	fisher_strand_p_value=0.826966	frequency=4.659e-01	ks_quality_p_value=0.0359552	major_base=A	major_cov=19/28	major_frequency=5.341e-01	minor_base=G	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=4.659e-01	polymorphism_score=121.0	prediction=polymorphism	ref_cov=19/28	total_cov=34/54
RA	132	.	NC_000913	566530	1	.	T	bias_e_value=660437	bias_p_value=0.142285	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.7	fisher_strand_p_value=0.826966	frequency=4.659e-01	ks_quality_p_value=0.038745	major_base=.	major_cov=19/28	major_frequency=5.341e-01	minor_base=T	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=4.659e-01	polymorphism_score=215.2	prediction=polymorphism	ref_cov=19/28	total_cov=34/54
RA	133	.	NC_000913	566532	0	A	T	bias_e_value=835198	bias_p_value=0.179936	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.9	fisher_strand_p_value=1	frequency=4.651e-01	ks_quality_p_value=0.0435202	major_base=A	major_cov=18/28	major_frequency=5.349e-01	minor_base=T	minor_cov=15/25	new_cov=15/25	polymorphism_frequency=4.651e-01	polymorphism_score=127.7	prediction=polymorphism	ref_cov=18/28	total_cov=34/54
RA	134	.	NC_000913	566535	0	T	.	bias_e_value=1899060	bias_p_value=0.409134	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.4	fisher_strand_p_value=0.658366	frequency=4.824e-01	ks_quality_p_value=0.207945	major_base=T	major_cov=19/25	major_frequency=5.176e-01	minor_base=.	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=4.824e-01	polymorphism_score=161.6	prediction=polymorphism	ref_cov=19/25	total_cov=34/54
RA	135	.	NC_000913	566536	0	G	A	bias_e_value=2118070	bias_p_value=0.456317	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.9	fisher_strand_p_value=0.667199	frequency=4.713e-01	ks_quality_p_value=0.242355	major_base=G	major_cov=19/27	major_frequency=5.287e-01	minor_base=A	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=4.713e-01	polymorphism_score=117.6	prediction=polymorphism	ref_cov=19/27	total_cov=34/54
RA	136	.	NC_000913	566543	0	A	T	bias_e_value=4511500	bias_p_value=0.97196	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.0	fisher_strand_p_value=0.834222	frequency=5.104e-01	ks_quality_p_value=0.926291	major_base=T	major_cov=18/31	major_frequency=5.104e-01	minor_base=A	minor_cov=19/28	new_cov=18/31	polymorphism_frequency=5.104e-01	polymorphism_score=143.3	prediction=polymorphism	ref_cov=19/28	total_cov=37/59
RA	137	.	NC_000913	566547	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.3	fisher_strand_p_value=1	frequency=5.376e-01	ks_quality_p_value=1	major_base=A	major_cov=19/31	major_frequency=5.376e-01	minor_base=C	minor_cov=17/26	new_cov=19/31	polymorphism_frequency=5.376e-01	polymorphism_score=116.8	prediction=polymorphism	ref_cov=17/26	total_cov=36/58
RA	138	.	NC_000913	566565	0	A	G	bias_e_value=283785	bias_p_value=0.0611387	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.6	fisher_strand_p_value=0.673359	frequency=5.773e-01	ks_quality_p_value=0.0165108	major_base=G	major_cov=22/34	major_frequency=5.773e-01	minor_base=A	minor_cov=14/27	new_cov=22/34	polymorphism_frequency=5.773e-01	polymorphism_score=108.2	prediction=polymorphism	ref_cov=14/27	total_cov=37/61
RA	139	.	NC_000913	566570	0	A	C	bias_e_value=4562540	bias_p_value=0.982956	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.4	fisher_strand_p_value=0.83381	frequency=5.714e-01	ks_quality_p_value=0.98481	major_base=C	major_cov=22/34	major_frequency=5.714e-01	minor_base=A	minor_cov=15/27	new_cov=22/34	polymorphism_frequency=5.714e-01	polymorphism_score=100.2	prediction=polymorphism	ref_cov=15/27	total_cov=37/61
RA	140	.	NC_000913	566597	0	T	C	bias_e_value=4369340	bias_p_value=0.941333	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.9	fisher_strand_p_value=0.692634	frequency=6.140e-01	ks_quality_p_value=0.978342	major_base=C	major_cov=27/43	major_frequency=6.140e-01	minor_base=T	minor_cov=15/29	new_cov=27/43	polymorphism_frequency=6.140e-01	polymorphism_score=117.5	prediction=polymorphism	ref_cov=15/29	total_cov=42/72
RA	141	.	NC_000913	566651	0	T	C	bias_e_value=4334030	bias_p_value=0.933727	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.3	fisher_strand_p_value=0.845196	frequency=6.557e-01	ks_quality_p_value=0.779424	major_base=C	major_cov=30/50	major_frequency=6.557e-01	minor_base=T	minor_cov=17/25	new_cov=30/50	polymorphism_frequency=6.557e-01	polymorphism_score=109.8	prediction=polymorphism	ref_cov=17/25	total_cov=47/76
RA	142	.	NC_000913	566728	0	G	T	bias_e_value=2320440	bias_p_value=0.499917	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.8	fisher_strand_p_value=0.193268	frequency=5.814e-01	ks_quality_p_value=0.965668	major_base=T	major_cov=19/31	major_frequency=5.814e-01	minor_base=G	minor_cov=19/17	new_cov=19/31	polymorphism_frequency=5.814e-01	polymorphism_score=115.4	prediction=polymorphism	ref_cov=19/17	total_cov=39/48
RA	143	.	NC_000913	566740	0	A	G	bias_e_value=31262.2	bias_p_value=0.00673515	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.3	fisher_strand_p_value=0.374266	frequency=5.610e-01	ks_quality_p_value=0.0022241	major_base=G	major_cov=18/28	major_frequency=5.610e-01	minor_base=A	minor_cov=18/18	new_cov=18/28	polymorphism_frequency=5.610e-01	polymorphism_score=99.0	prediction=polymorphism	ref_cov=18/18	total_cov=36/46
RA	144	.	NC_000913	566742	0	A	C	bias_e_value=627233	bias_p_value=0.135131	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.2	fisher_strand_p_value=0.374266	frequency=5.610e-01	ks_quality_p_value=0.0801071	major_base=C	major_cov=18/28	major_frequency=5.610e-01	minor_base=A	minor_cov=18/18	new_cov=18/28	polymorphism_frequency=5.610e-01	polymorphism_score=106.9	prediction=polymorphism	ref_cov=18/18	total_cov=36/46
RA	145	.	NC_000913	566756	0	G	C	bias_e_value=2275610	bias_p_value=0.490258	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.2	fisher_strand_p_value=0.260542	frequency=5.500e-01	ks_quality_p_value=0.694442	major_base=C	major_cov=17/27	major_frequency=5.500e-01	minor_base=G	minor_cov=19/17	new_cov=17/27	polymorphism_frequency=5.500e-01	polymorphism_score=126.8	prediction=polymorphism	ref_cov=19/17	total_cov=36/44
RA	146	.	NC_000913	566770	0	C	A	bias_e_value=3893320	bias_p_value=0.838779	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.6	fisher_strand_p_value=0.489075	frequency=5.263e-01	ks_quality_p_value=0.999708	major_base=A	major_cov=16/24	major_frequency=5.263e-01	minor_base=C	minor_cov=18/18	new_cov=16/24	polymorphism_frequency=5.263e-01	polymorphism_score=113.8	prediction=polymorphism	ref_cov=18/18	total_cov=34/42
RA	147	.	NC_000913	568052	0	T	C	bias_e_value=232230	bias_p_value=0.0500319	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.1	fisher_strand_p_value=1	frequency=4.429e-01	ks_quality_p_value=0.00871166	major_base=T	major_cov=16/23	major_frequency=5.571e-01	minor_base=C	minor_cov=12/19	new_cov=12/19	polymorphism_frequency=4.429e-01	polymorphism_score=88.9	prediction=polymorphism	ref_cov=16/23	total_cov=29/42
RA	148	.	NC_000913	568067	0	G	A	bias_e_value=1636630	bias_p_value=0.352596	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.2	fisher_strand_p_value=1	frequency=3.279e-01	ks_quality_p_value=0.109907	major_base=G	major_cov=18/23	major_frequency=6.721e-01	minor_base=A	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=3.279e-01	polymorphism_score=48.5	prediction=polymorphism	ref_cov=18/23	total_cov=27/34
RA	149	.	NC_000913	568076	0	A	T	bias_e_value=3091430	bias_p_value=0.66602	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.8	fisher_strand_p_value=1	frequency=3.051e-01	ks_quality_p_value=0.304033	major_base=A	major_cov=17/24	major_frequency=6.949e-01	minor_base=T	minor_cov=7/11	new_cov=7/11	polymorphism_frequency=3.051e-01	polymorphism_score=42.4	prediction=polymorphism	ref_cov=17/24	total_cov=24/35
RA	150	.	NC_000913	568077	0	A	C	bias_e_value=4349250	bias_p_value=0.937004	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.2	fisher_strand_p_value=1	frequency=3.103e-01	ks_quality_p_value=0.666734	major_base=A	major_cov=16/24	major_frequency=6.897e-01	minor_base=C	minor_cov=7/11	new_cov=7/11	polymorphism_frequency=3.103e-01	polymorphism_score=50.9	prediction=polymorphism	ref_cov=16/24	total_cov=24/35
RA	151	.	NC_000913	568079	0	C	T	bias_e_value=1734470	bias_p_value=0.373676	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.5	fisher_strand_p_value=1	frequency=3.051e-01	ks_quality_p_value=0.119644	major_base=C	major_cov=17/24	major_frequency=6.949e-01	minor_base=T	minor_cov=7/11	new_cov=7/11	polymorphism_frequency=3.051e-01	polymorphism_score=44.2	prediction=polymorphism	ref_cov=17/24	total_cov=24/35
RA	152	.	NC_000913	568085	0	C	T	bias_e_value=874973	bias_p_value=0.188505	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.8	fisher_strand_p_value=1	frequency=3.000e-01	ks_quality_p_value=0.0462814	major_base=C	major_cov=17/25	major_frequency=7.000e-01	minor_base=T	minor_cov=7/11	new_cov=7/11	polymorphism_frequency=3.000e-01	polymorphism_score=42.5	prediction=polymorphism	ref_cov=17/25	total_cov=24/36
RA	153	.	NC_000913	568086	0	G	A	bias_e_value=2398650	bias_p_value=0.516766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.7	fisher_strand_p_value=1	frequency=3.000e-01	ks_quality_p_value=0.196834	major_base=G	major_cov=17/25	major_frequency=7.000e-01	minor_base=A	minor_cov=7/11	new_cov=7/11	polymorphism_frequency=3.000e-01	polymorphism_score=43.0	prediction=polymorphism	ref_cov=17/25	total_cov=24/36
RA	154	.	NC_000913	568088	0	T	C	bias_e_value=2248530	bias_p_value=0.484425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.6	fisher_strand_p_value=1	frequency=3.000e-01	ks_quality_p_value=0.177538	major_base=T	major_cov=17/25	major_frequency=7.000e-01	minor_base=C	minor_cov=7/11	new_cov=7/11	polymorphism_frequency=3.000e-01	polymorphism_score=47.5	prediction=polymorphism	ref_cov=17/25	total_cov=24/36
RA	155	.	NC_000913	568091	0	T	A	bias_e_value=3275570	bias_p_value=0.705691	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.3	fisher_strand_p_value=0.772179	frequency=2.931e-01	ks_quality_p_value=0.438989	major_base=T	major_cov=17/24	major_frequency=7.069e-01	minor_base=A	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=2.931e-01	polymorphism_score=48.6	prediction=polymorphism	ref_cov=17/24	total_cov=24/36
RA	156	.	NC_000913	578172	0	G	T	bias_e_value=177166	bias_p_value=0.0381687	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.1	fisher_strand_p_value=0.725622	frequency=2.041e-01	ks_quality_p_value=0.00866733	major_base=G	major_cov=23/16	major_frequency=7.959e-01	minor_base=T	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.041e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=23/16	total_cov=28/21
RA	157	.	NC_000913	578210	0	T	C	bias_e_value=1343460	bias_p_value=0.289437	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.0	fisher_strand_p_value=0.725416	frequency=2.174e-01	ks_quality_p_value=0.114338	major_base=T	major_cov=18/18	major_frequency=7.826e-01	minor_base=C	minor_cov=6/4	new_cov=6/4	polymorphism_frequency=2.174e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=18/18	total_cov=26/22
RA	158	.	NC_000913	578244	0	A	G	bias_e_value=1824210	bias_p_value=0.393009	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.5	fisher_strand_p_value=0.715925	frequency=2.045e-01	ks_quality_p_value=0.180066	major_base=A	major_cov=16/19	major_frequency=7.955e-01	minor_base=G	minor_cov=5/4	new_cov=5/4	polymorphism_frequency=2.045e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=16/19	total_cov=21/23
RA	159	.	NC_000913	578331	0	G	T	bias_e_value=4211480	bias_p_value=0.907324	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.8	fisher_strand_p_value=0.790261	frequency=4.545e-01	ks_quality_p_value=0.7613	major_base=G	major_cov=12/18	major_frequency=5.455e-01	minor_base=T	minor_cov=11/14	new_cov=11/14	polymorphism_frequency=4.545e-01	polymorphism_score=54.8	prediction=polymorphism	ref_cov=12/18	total_cov=23/32
RA	160	.	NC_000913	578427	0	G	C	bias_e_value=4263730	bias_p_value=0.91858	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.2	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.624635	major_base=G	major_cov=9/25	major_frequency=5.000e-01	minor_base=C	minor_cov=10/24	new_cov=10/24	polymorphism_frequency=5.000e-01	polymorphism_score=126.8	prediction=polymorphism	ref_cov=9/25	total_cov=19/49
RA	161	.	NC_000913	578809	0	T	C	bias_e_value=4224210	bias_p_value=0.910066	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.4	fisher_strand_p_value=0.777783	frequency=7.097e-01	ks_quality_p_value=0.780516	major_base=C	major_cov=17/27	major_frequency=7.097e-01	minor_base=T	minor_cov=6/12	new_cov=17/27	polymorphism_frequency=7.097e-01	polymorphism_score=39.1	prediction=polymorphism	ref_cov=6/12	total_cov=23/39
RA	162	.	NC_000913	578811	0	T	G	bias_e_value=1752700	bias_p_value=0.377602	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.0	fisher_strand_p_value=1	frequency=7.167e-01	ks_quality_p_value=0.1215	major_base=G	major_cov=16/27	major_frequency=7.167e-01	minor_base=T	minor_cov=6/11	new_cov=16/27	polymorphism_frequency=7.167e-01	polymorphism_score=42.5	prediction=polymorphism	ref_cov=6/11	total_cov=23/38
RA	163	.	NC_000913	578831	0	T	C	bias_e_value=2268940	bias_p_value=0.488822	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.8	fisher_strand_p_value=1	frequency=7.500e-01	ks_quality_p_value=0.180092	major_base=C	major_cov=15/27	major_frequency=7.500e-01	minor_base=T	minor_cov=5/9	new_cov=15/27	polymorphism_frequency=7.500e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=5/9	total_cov=20/36
RA	164	.	NC_000913	579004	0	C	T	bias_e_value=322320	bias_p_value=0.0694408	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.7	fisher_strand_p_value=0.0280986	frequency=7.561e-01	ks_quality_p_value=0.462529	major_base=T	major_cov=16/15	major_frequency=7.561e-01	minor_base=C	minor_cov=1/9	new_cov=16/15	polymorphism_frequency=7.561e-01	polymorphism_score=22.4	prediction=polymorphism	ref_cov=1/9	total_cov=17/24
RA	165	.	NC_000913	579099	0	A	.	bias_e_value=3517920	bias_p_value=0.757903	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.1	fisher_strand_p_value=0.486196	frequency=6.842e-01	ks_quality_p_value=0.803624	major_base=.	major_cov=13/13	major_frequency=6.842e-01	minor_base=A	minor_cov=4/8	new_cov=13/13	polymorphism_frequency=6.842e-01	polymorphism_score=54.7	prediction=polymorphism	ref_cov=4/8	total_cov=17/21
RA	166	.	NC_000913	579127	0	T	C	bias_e_value=1558170	bias_p_value=0.335693	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.2	fisher_strand_p_value=0.711953	frequency=6.667e-01	ks_quality_p_value=0.143791	major_base=C	major_cov=11/11	major_frequency=6.667e-01	minor_base=T	minor_cov=4/7	new_cov=11/11	polymorphism_frequency=6.667e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=4/7	total_cov=15/18
RA	167	.	NC_000913	579134	0	T	C	bias_e_value=1938630	bias_p_value=0.41766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.2	fisher_strand_p_value=0.456403	frequency=7.097e-01	ks_quality_p_value=0.309431	major_base=C	major_cov=11/11	major_frequency=7.097e-01	minor_base=T	minor_cov=3/6	new_cov=11/11	polymorphism_frequency=7.097e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=3/6	total_cov=15/17
RA	168	.	NC_000913	579146	0	A	G	bias_e_value=3683430	bias_p_value=0.79356	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.0	fisher_strand_p_value=0.704251	frequency=6.774e-01	ks_quality_p_value=0.611677	major_base=G	major_cov=11/10	major_frequency=6.774e-01	minor_base=A	minor_cov=4/6	new_cov=11/10	polymorphism_frequency=6.774e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=4/6	total_cov=15/16
RA	169	.	NC_000913	579271	0	G	A	bias_e_value=3068280	bias_p_value=0.661032	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.8	fisher_strand_p_value=0.314121	frequency=5.588e-01	ks_quality_p_value=0.954622	major_base=A	major_cov=9/10	major_frequency=5.588e-01	minor_base=G	minor_cov=10/5	new_cov=9/10	polymorphism_frequency=5.588e-01	polymorphism_score=41.8	prediction=polymorphism	ref_cov=10/5	total_cov=19/15
RA	170	.	NC_000913	579285	0	T	C	bias_e_value=2521890	bias_p_value=0.543318	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.8	fisher_strand_p_value=0.49786	frequency=6.216e-01	ks_quality_p_value=0.429029	major_base=C	major_cov=11/12	major_frequency=6.216e-01	minor_base=T	minor_cov=9/5	new_cov=11/12	polymorphism_frequency=6.216e-01	polymorphism_score=35.8	prediction=polymorphism	ref_cov=9/5	total_cov=20/17
RA	171	.	NC_000913	579385	0	A	G	bias_e_value=4529700	bias_p_value=0.975882	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.9	fisher_strand_p_value=1	frequency=7.097e-01	ks_quality_p_value=0.788568	major_base=G	major_cov=12/10	major_frequency=7.097e-01	minor_base=A	minor_cov=5/4	new_cov=12/10	polymorphism_frequency=7.097e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=5/4	total_cov=17/15
RA	172	.	NC_000913	579457	0	A	G	bias_e_value=2945610	bias_p_value=0.634604	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.5	fisher_strand_p_value=0.481028	frequency=6.944e-01	ks_quality_p_value=0.57911	major_base=G	major_cov=12/13	major_frequency=6.944e-01	minor_base=A	minor_cov=7/4	new_cov=12/13	polymorphism_frequency=6.944e-01	polymorphism_score=26.3	prediction=polymorphism	ref_cov=7/4	total_cov=19/17
RA	173	.	NC_000913	579502	0	A	G	bias_e_value=507474	bias_p_value=0.109331	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.4	fisher_strand_p_value=0.711953	frequency=6.875e-01	ks_quality_p_value=0.0321449	major_base=G	major_cov=11/11	major_frequency=6.875e-01	minor_base=A	minor_cov=6/4	new_cov=11/11	polymorphism_frequency=6.875e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=6/4	total_cov=17/15
RA	174	.	NC_000913	579540	0	T	C	bias_e_value=4434520	bias_p_value=0.955375	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.0	fisher_strand_p_value=1	frequency=6.667e-01	ks_quality_p_value=0.716531	major_base=C	major_cov=9/9	major_frequency=6.667e-01	minor_base=T	minor_cov=5/4	new_cov=9/9	polymorphism_frequency=6.667e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=5/4	total_cov=14/13
RA	175	.	NC_000913	579651	0	C	T	bias_e_value=4106810	bias_p_value=0.884773	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.4	fisher_strand_p_value=1	frequency=7.179e-01	ks_quality_p_value=0.56013	major_base=T	major_cov=14/14	major_frequency=7.179e-01	minor_base=C	minor_cov=6/5	new_cov=14/14	polymorphism_frequency=7.179e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=6/5	total_cov=20/19
RA	176	.	NC_000913	579671	0	T	C	bias_e_value=1004940	bias_p_value=0.216505	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.6	fisher_strand_p_value=0.74171	frequency=6.829e-01	ks_quality_p_value=0.0750762	major_base=C	major_cov=15/13	major_frequency=6.829e-01	minor_base=T	minor_cov=8/5	new_cov=15/13	polymorphism_frequency=6.829e-01	polymorphism_score=29.7	prediction=polymorphism	ref_cov=8/5	total_cov=23/19
RA	177	.	NC_000913	579717	0	A	C	bias_e_value=3361600	bias_p_value=0.724225	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.3	fisher_strand_p_value=1	frequency=6.047e-01	ks_quality_p_value=0.356522	major_base=C	major_cov=15/11	major_frequency=6.047e-01	minor_base=A	minor_cov=9/8	new_cov=15/11	polymorphism_frequency=6.047e-01	polymorphism_score=44.7	prediction=polymorphism	ref_cov=9/8	total_cov=24/19
RA	178	.	NC_000913	579811	0	C	T	bias_e_value=4513790	bias_p_value=0.972454	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.7	fisher_strand_p_value=0.775906	frequency=5.400e-01	ks_quality_p_value=0.998391	major_base=T	major_cov=16/11	major_frequency=5.400e-01	minor_base=C	minor_cov=12/11	new_cov=16/11	polymorphism_frequency=5.400e-01	polymorphism_score=59.4	prediction=polymorphism	ref_cov=12/11	total_cov=28/22
RA	179	.	NC_000913	580020	0	G	A	bias_e_value=4613500	bias_p_value=0.993934	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.6	fisher_strand_p_value=1	frequency=5.424e-01	ks_quality_p_value=0.891895	major_base=A	major_cov=17/15	major_frequency=5.424e-01	minor_base=G	minor_cov=15/12	new_cov=17/15	polymorphism_frequency=5.424e-01	polymorphism_score=79.1	prediction=polymorphism	ref_cov=15/12	total_cov=32/27
RA	180	.	NC_000913	580115	0	C	T	bias_e_value=4639120	bias_p_value=0.999455	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.5	fisher_strand_p_value=1	frequency=5.915e-01	ks_quality_p_value=0.967156	major_base=T	major_cov=23/19	major_frequency=5.915e-01	minor_base=C	minor_cov=16/13	new_cov=23/19	polymorphism_frequency=5.915e-01	polymorphism_score=80.4	prediction=polymorphism	ref_cov=16/13	total_cov=39/34
RA	181	.	NC_000913	580119	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.3	fisher_strand_p_value=1	frequency=6.232e-01	ks_quality_p_value=1	major_base=G	major_cov=23/20	major_frequency=6.232e-01	minor_base=A	minor_cov=14/12	new_cov=23/20	polymorphism_frequency=6.232e-01	polymorphism_score=61.8	prediction=polymorphism	ref_cov=14/12	total_cov=38/32
RA	182	.	NC_000913	580120	0	C	T	bias_e_value=4641600	bias_p_value=0.999989	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.2	fisher_strand_p_value=1	frequency=6.000e-01	ks_quality_p_value=0.995249	major_base=T	major_cov=23/19	major_frequency=6.000e-01	minor_base=C	minor_cov=15/13	new_cov=23/19	polymorphism_frequency=6.000e-01	polymorphism_score=75.6	prediction=polymorphism	ref_cov=15/13	total_cov=38/32
RA	183	.	NC_000913	580302	0	C	T	bias_e_value=4531480	bias_p_value=0.976264	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.8	fisher_strand_p_value=0.792237	frequency=6.818e-01	ks_quality_p_value=0.997406	major_base=T	major_cov=22/23	major_frequency=6.818e-01	minor_base=C	minor_cov=9/12	new_cov=22/23	polymorphism_frequency=6.818e-01	polymorphism_score=48.2	prediction=polymorphism	ref_cov=9/12	total_cov=31/35
RA	184	.	NC_000913	580437	0	A	C	bias_e_value=4020330	bias_p_value=0.866143	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.8	fisher_strand_p_value=0.549589	frequency=4.186e-01	ks_quality_p_value=0.963375	major_base=A	major_cov=10/15	major_frequency=5.814e-01	minor_base=C	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=4.186e-01	polymorphism_score=46.6	prediction=polymorphism	ref_cov=10/15	total_cov=19/24
RA	185	.	NC_000913	690948	0	G	A	bias_e_value=2017430	bias_p_value=0.434637	consensus_score=168.5	fisher_strand_p_value=0.392157	frequency=1	ks_quality_p_value=0.382593	major_base=A	major_cov=31/19	major_frequency=9.804e-01	minor_base=G	minor_cov=0/1	new_cov=31/19	polymorphism_frequency=9.804e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=32/20
RA	186	.	NC_000913	700038	0	G	A	consensus_score=171.5	frequency=1	major_base=A	major_cov=28/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/23
RA	187	.	NC_000913	809217	0	C	A	bias_e_value=4088580	bias_p_value=0.880845	consensus_score=152.8	fisher_strand_p_value=0.553421	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/30	major_frequency=9.412e-01	minor_base=C	minor_cov=2/1	new_cov=18/30	polymorphism_frequency=9.412e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=2/1	total_cov=21/31
RA	188	.	NC_000913	809218	0	A	G	bias_e_value=4101450	bias_p_value=0.88362	consensus_score=160.1	fisher_strand_p_value=0.558145	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=19/30	major_frequency=9.423e-01	minor_base=A	minor_cov=2/1	new_cov=19/30	polymorphism_frequency=9.423e-01	polymorphism_score=-0.9	prediction=consensus	ref_cov=2/1	total_cov=21/31
RA	189	.	NC_000913	968837	0	G	A	bias_e_value=4061720	bias_p_value=0.875059	consensus_score=104.4	fisher_strand_p_value=0.543783	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=11/20	major_frequency=9.118e-01	minor_base=G	minor_cov=2/1	new_cov=11/20	polymorphism_frequency=9.118e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=2/1	total_cov=14/21
RA	190	.	NC_000913	1061935	0	G	A	bias_e_value=4640720	bias_p_value=0.999799	consensus_score=91.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.980001	major_base=A	major_cov=19/14	major_frequency=9.167e-01	minor_base=G	minor_cov=2/1	new_cov=19/14	polymorphism_frequency=9.167e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=2/1	total_cov=21/17
RA	191	.	NC_000913	1069743	0	C	T	bias_e_value=1531070	bias_p_value=0.329854	consensus_score=110.8	fisher_strand_p_value=0.110994	frequency=1	ks_quality_p_value=0.89937	major_base=T	major_cov=29/13	major_frequency=9.545e-01	minor_base=C	minor_cov=0/2	new_cov=29/13	polymorphism_frequency=9.545e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/2	total_cov=29/15
RA	192	.	NC_000913	1093346	0	T	.	consensus_score=41.9	frequency=1	major_base=.	major_cov=7/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/3
RA	193	.	NC_000913	1098620	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=92.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/16	major_frequency=9.688e-01	minor_base=C	minor_cov=1/0	new_cov=15/16	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	194	.	NC_000913	1111727	0	C	T	bias_e_value=3878800	bias_p_value=0.835651	consensus_score=102.4	fisher_strand_p_value=0.500891	frequency=1	ks_quality_p_value=0.967453	major_base=T	major_cov=18/14	major_frequency=9.412e-01	minor_base=C	minor_cov=2/0	new_cov=18/14	polymorphism_frequency=9.412e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=2/0	total_cov=20/15
RA	195	.	NC_000913	1111728	0	C	T	bias_e_value=3915900	bias_p_value=0.843644	consensus_score=106.9	fisher_strand_p_value=0.495798	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/15	major_frequency=9.429e-01	minor_base=C	minor_cov=2/0	new_cov=18/15	polymorphism_frequency=9.429e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=2/0	total_cov=20/15
RA	196	.	NC_000913	1169836	0	A	G	consensus_score=69.3	frequency=1	major_base=G	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	197	.	NC_000913	1189980	0	A	G	consensus_score=86.6	frequency=1	major_base=G	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	198	.	NC_000913	1196220	0	C	T	bias_e_value=2769090	bias_p_value=0.596574	consensus_score=27.2	fisher_strand_p_value=0.25	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=2/9	major_frequency=9.167e-01	minor_base=A	minor_cov=1/0	new_cov=2/9	polymorphism_frequency=9.167e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/9
RA	199	.	NC_000913	1196232	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=21.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=3/6	major_frequency=9.000e-01	minor_base=C	minor_cov=0/1	new_cov=3/6	polymorphism_frequency=9.000e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=3/7
RA	200	.	NC_000913	1196245	0	T	C	consensus_score=18.9	frequency=1	major_base=C	major_cov=2/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/6
RA	201	.	NC_000913	1196247	0	A	G	consensus_score=18.7	frequency=1	major_base=G	major_cov=2/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/6
RA	202	.	NC_000913	1301992	0	A	T	consensus_score=110.4	frequency=1	major_base=T	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	203	.	NC_000913	1306736	0	T	G	consensus_score=76.2	frequency=1	major_base=G	major_cov=12/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/10
RA	204	.	NC_000913	1310770	0	A	G	consensus_score=92.0	frequency=1	major_base=G	major_cov=17/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/11
RA	205	.	NC_000913	1337394	0	A	G	consensus_score=95.2	frequency=1	major_base=G	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	206	.	NC_000913	1357202	0	C	T	bias_e_value=3528890	bias_p_value=0.760265	consensus_score=59.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.393241	major_base=T	major_cov=15/5	major_frequency=9.524e-01	minor_base=C	minor_cov=1/0	new_cov=15/5	polymorphism_frequency=9.524e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=16/6
RA	207	.	NC_000913	1358859	0	T	C	bias_e_value=4621190	bias_p_value=0.995592	consensus_score=84.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.907584	major_base=C	major_cov=15/15	major_frequency=9.091e-01	minor_base=A	minor_cov=2/1	new_cov=15/15	polymorphism_frequency=9.091e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	208	.	NC_000913	1423225	0	G	A	bias_e_value=3559390	bias_p_value=0.766837	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.2	fisher_strand_p_value=0.725755	frequency=2.564e-01	ks_quality_p_value=0.551633	major_base=G	major_cov=14/15	major_frequency=7.436e-01	minor_base=A	minor_cov=4/6	new_cov=4/6	polymorphism_frequency=2.564e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=14/15	total_cov=19/21
RA	209	.	NC_000913	1423244	0	G	C	bias_e_value=4641530	bias_p_value=0.999973	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.1	fisher_strand_p_value=1	frequency=4.000e-01	ks_quality_p_value=0.99262	major_base=G	major_cov=12/15	major_frequency=6.000e-01	minor_base=C	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=4.000e-01	polymorphism_score=57.7	prediction=polymorphism	ref_cov=12/15	total_cov=20/25
RA	210	.	NC_000913	1423272	0	C	T	bias_e_value=2040310	bias_p_value=0.439566	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.9	fisher_strand_p_value=1	frequency=4.821e-01	ks_quality_p_value=0.152647	major_base=C	major_cov=13/16	major_frequency=5.179e-01	minor_base=T	minor_cov=13/14	new_cov=13/14	polymorphism_frequency=4.821e-01	polymorphism_score=74.5	prediction=polymorphism	ref_cov=13/16	total_cov=26/30
RA	211	.	NC_000913	1423273	0	G	A	bias_e_value=3346850	bias_p_value=0.721047	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.1	fisher_strand_p_value=1	frequency=4.821e-01	ks_quality_p_value=0.353454	major_base=G	major_cov=13/16	major_frequency=5.179e-01	minor_base=A	minor_cov=13/14	new_cov=13/14	polymorphism_frequency=4.821e-01	polymorphism_score=70.2	prediction=polymorphism	ref_cov=13/16	total_cov=26/30
RA	212	.	NC_000913	1423283	0	A	C	bias_e_value=4641560	bias_p_value=0.999981	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.3	fisher_strand_p_value=1	frequency=4.737e-01	ks_quality_p_value=0.993782	major_base=A	major_cov=15/15	major_frequency=5.263e-01	minor_base=C	minor_cov=13/14	new_cov=13/14	polymorphism_frequency=4.737e-01	polymorphism_score=78.7	prediction=polymorphism	ref_cov=15/15	total_cov=28/29
RA	213	.	NC_000913	1423284	0	A	C	bias_e_value=139470	bias_p_value=0.0300474	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.2	fisher_strand_p_value=1	frequency=4.912e-01	ks_quality_p_value=0.00472884	major_base=A	major_cov=14/15	major_frequency=5.088e-01	minor_base=C	minor_cov=14/14	new_cov=14/14	polymorphism_frequency=4.912e-01	polymorphism_score=84.3	prediction=polymorphism	ref_cov=14/15	total_cov=28/29
RA	214	.	NC_000913	1423338	0	G	C	bias_e_value=3391140	bias_p_value=0.73059	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.1	fisher_strand_p_value=0.799932	frequency=5.781e-01	ks_quality_p_value=0.453472	major_base=C	major_cov=17/20	major_frequency=5.781e-01	minor_base=G	minor_cov=11/16	new_cov=17/20	polymorphism_frequency=5.781e-01	polymorphism_score=91.4	prediction=polymorphism	ref_cov=11/16	total_cov=28/36
RA	215	.	NC_000913	1423404	0	G	T	bias_e_value=4539980	bias_p_value=0.978095	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.4	fisher_strand_p_value=0.798129	frequency=5.714e-01	ks_quality_p_value=1	major_base=T	major_cov=17/19	major_frequency=5.714e-01	minor_base=G	minor_cov=11/16	new_cov=17/19	polymorphism_frequency=5.714e-01	polymorphism_score=65.3	prediction=polymorphism	ref_cov=11/16	total_cov=28/35
RA	216	.	NC_000913	1539947	0	C	G	bias_e_value=4641650	bias_p_value=1	consensus_score=88.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=22/6	major_frequency=9.655e-01	minor_base=T	minor_cov=1/0	new_cov=22/6	polymorphism_frequency=9.655e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/0	total_cov=23/6
RA	217	.	NC_000913	1636413	0	C	A	bias_e_value=4187750	bias_p_value=0.902211	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.7	fisher_strand_p_value=0.597678	frequency=7.297e-01	ks_quality_p_value=0.99004	major_base=A	major_cov=24/30	major_frequency=7.297e-01	minor_base=C	minor_cov=7/13	new_cov=24/30	polymorphism_frequency=7.297e-01	polymorphism_score=46.5	prediction=polymorphism	ref_cov=7/13	total_cov=31/43
RA	218	.	NC_000913	1636423	0	T	C	bias_e_value=4013180	bias_p_value=0.864602	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.6	fisher_strand_p_value=0.59633	frequency=7.222e-01	ks_quality_p_value=0.883818	major_base=C	major_cov=23/29	major_frequency=7.222e-01	minor_base=T	minor_cov=7/13	new_cov=23/29	polymorphism_frequency=7.222e-01	polymorphism_score=43.1	prediction=polymorphism	ref_cov=7/13	total_cov=30/42
RA	219	.	NC_000913	1636455	0	G	A	bias_e_value=4435070	bias_p_value=0.955494	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.7	fisher_strand_p_value=0.798561	frequency=7.179e-01	ks_quality_p_value=0.897724	major_base=A	major_cov=24/32	major_frequency=7.179e-01	minor_base=G	minor_cov=8/14	new_cov=24/32	polymorphism_frequency=7.179e-01	polymorphism_score=56.2	prediction=polymorphism	ref_cov=8/14	total_cov=32/46
RA	220	.	NC_000913	1636484	0	C	T	bias_e_value=4546620	bias_p_value=0.979526	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.7	fisher_strand_p_value=0.804652	frequency=7.125e-01	ks_quality_p_value=0.999924	major_base=T	major_cov=25/32	major_frequency=7.125e-01	minor_base=C	minor_cov=9/14	new_cov=25/32	polymorphism_frequency=7.125e-01	polymorphism_score=50.5	prediction=polymorphism	ref_cov=9/14	total_cov=34/47
RA	221	.	NC_000913	1636503	0	T	C	bias_e_value=1901250	bias_p_value=0.409607	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.1	fisher_strand_p_value=1	frequency=7.126e-01	ks_quality_p_value=0.137142	major_base=C	major_cov=26/36	major_frequency=7.126e-01	minor_base=T	minor_cov=10/15	new_cov=26/36	polymorphism_frequency=7.126e-01	polymorphism_score=60.3	prediction=polymorphism	ref_cov=10/15	total_cov=37/51
RA	222	.	NC_000913	1643679	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=128.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/17	major_frequency=9.744e-01	minor_base=G	minor_cov=1/0	new_cov=21/17	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/17
RA	223	.	NC_000913	1652331	0	T	C	bias_e_value=3596090	bias_p_value=0.774744	consensus_score=68.5	fisher_strand_p_value=0.409091	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=8/13	major_frequency=9.545e-01	minor_base=T	minor_cov=1/0	new_cov=8/13	polymorphism_frequency=9.545e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=9/13
RA	224	.	NC_000913	1728754	0	C	T	bias_e_value=3520190	bias_p_value=0.758391	consensus_score=115.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.391238	major_base=T	major_cov=23/13	major_frequency=9.730e-01	minor_base=C	minor_cov=1/0	new_cov=23/13	polymorphism_frequency=9.730e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=24/14
RA	225	.	NC_000913	1829887	0	G	A	bias_e_value=3670000	bias_p_value=0.790666	consensus_score=114.6	fisher_strand_p_value=0.452381	frequency=1	ks_quality_p_value=0.944679	major_base=A	major_cov=18/23	major_frequency=9.762e-01	minor_base=G	minor_cov=1/0	new_cov=18/23	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=19/23
RA	226	.	NC_000913	1894839	0	T	C	consensus_score=75.5	frequency=1	major_base=C	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	227	.	NC_000913	1978437	0	G	A	bias_e_value=3653340	bias_p_value=0.787077	consensus_score=45.7	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=0.967216	major_base=A	major_cov=6/9	major_frequency=9.375e-01	minor_base=G	minor_cov=1/0	new_cov=6/9	polymorphism_frequency=9.375e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=8/9
RA	228	.	NC_000913	2040433	0	C	A	bias_e_value=3346730	bias_p_value=0.721021	consensus_score=126.9	fisher_strand_p_value=0.357143	frequency=1	ks_quality_p_value=0.989601	major_base=A	major_cov=14/27	major_frequency=9.762e-01	minor_base=G	minor_cov=1/0	new_cov=14/27	polymorphism_frequency=9.762e-01	polymorphism_score=-7.3	prediction=consensus	ref_cov=0/0	total_cov=15/28
RA	229	.	NC_000913	2042171	0	G	A	consensus_score=61.3	frequency=1	major_base=A	major_cov=10/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/10
RA	230	.	NC_000913	2044642	0	T	C	bias_e_value=1572740	bias_p_value=0.338832	consensus_score=26.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.103754	major_base=C	major_cov=4/7	major_frequency=8.462e-01	minor_base=T	minor_cov=1/1	new_cov=4/7	polymorphism_frequency=8.462e-01	polymorphism_score=-0.5	prediction=consensus	ref_cov=1/1	total_cov=5/8
RA	231	.	NC_000913	2111259	0	G	.	consensus_score=112.3	frequency=1	major_base=.	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	232	.	NC_000913	2173363	0	C	.	bias_e_value=871797	bias_p_value=0.18782	consensus_score=75.4	fisher_strand_p_value=0.0590074	frequency=1	ks_quality_p_value=0.780561	major_base=.	major_cov=17/8	major_frequency=8.065e-01	minor_base=C	minor_cov=1/5	new_cov=17/8	polymorphism_frequency=8.065e-01	polymorphism_score=21.0	prediction=consensus	ref_cov=1/5	total_cov=18/13
RA	233	.	NC_000913	2173364	0	C	.	bias_e_value=871797	bias_p_value=0.18782	consensus_score=77.1	fisher_strand_p_value=0.0590074	frequency=1	ks_quality_p_value=0.780561	major_base=.	major_cov=17/8	major_frequency=8.065e-01	minor_base=C	minor_cov=1/5	new_cov=17/8	polymorphism_frequency=8.065e-01	polymorphism_score=19.3	prediction=consensus	ref_cov=1/5	total_cov=18/13
RA	234	.	NC_000913	2173448	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=89.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/15	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=14/15	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	235	.	NC_000913	2339173	0	G	A	bias_e_value=2584500	bias_p_value=0.556807	consensus_score=129.4	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.489394	major_base=A	major_cov=24/19	major_frequency=9.773e-01	minor_base=G	minor_cov=0/1	new_cov=24/19	polymorphism_frequency=9.773e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=24/20
RA	236	.	NC_000913	2587112	0	C	T	consensus_score=110.9	frequency=1	major_base=T	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	237	.	NC_000913	2661961	0	G	T	consensus_score=74.9	frequency=1	major_base=T	major_cov=10/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/14
RA	238	.	NC_000913	2680490	0	G	A	bias_e_value=3628840	bias_p_value=0.7818	consensus_score=101.8	fisher_strand_p_value=0.424242	frequency=1	ks_quality_p_value=0.983099	major_base=A	major_cov=13/19	major_frequency=9.697e-01	minor_base=C	minor_cov=1/0	new_cov=13/19	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/19
RA	239	.	NC_000913	2686156	0	G	A	bias_e_value=4641480	bias_p_value=0.999963	consensus_score=100.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991435	major_base=A	major_cov=18/12	major_frequency=9.677e-01	minor_base=C	minor_cov=1/0	new_cov=18/12	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	240	.	NC_000913	2724285	0	G	A	bias_e_value=2632350	bias_p_value=0.567114	consensus_score=71.8	fisher_strand_p_value=0.538462	frequency=1	ks_quality_p_value=0.425993	major_base=A	major_cov=9/16	major_frequency=9.259e-01	minor_base=G	minor_cov=0/2	new_cov=9/16	polymorphism_frequency=9.259e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=0/2	total_cov=10/18
RA	241	.	NC_000913	2729586	0	G	A	bias_e_value=4538480	bias_p_value=0.977772	consensus_score=56.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.796703	major_base=A	major_cov=13/7	major_frequency=9.091e-01	minor_base=G	minor_cov=2/0	new_cov=13/7	polymorphism_frequency=9.091e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=2/0	total_cov=16/7
RA	242	.	NC_000913	2823537	0	A	G	bias_e_value=2489670	bias_p_value=0.536377	consensus_score=125.8	fisher_strand_p_value=0.518272	frequency=1	ks_quality_p_value=0.403514	major_base=G	major_cov=12/29	major_frequency=9.535e-01	minor_base=A	minor_cov=1/1	new_cov=12/29	polymorphism_frequency=9.535e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=13/31
RA	243	.	NC_000913	2867454	0	T	A	bias_e_value=4542270	bias_p_value=0.978589	consensus_score=138.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.800333	major_base=A	major_cov=18/22	major_frequency=9.091e-01	minor_base=T	minor_cov=2/2	new_cov=18/22	polymorphism_frequency=9.091e-01	polymorphism_score=3.2	prediction=consensus	ref_cov=2/2	total_cov=20/24
RA	244	.	NC_000913	2867455	0	G	A	bias_e_value=3771600	bias_p_value=0.812556	consensus_score=150.6	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.998943	major_base=A	major_cov=19/24	major_frequency=9.773e-01	minor_base=T	minor_cov=1/0	new_cov=19/24	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/24
RA	245	.	NC_000913	2926772	0	C	A	consensus_score=80.0	frequency=1	major_base=A	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	246	.	NC_000913	2939297	0	G	T	bias_e_value=1817970	bias_p_value=0.391665	consensus_score=51.2	fisher_strand_p_value=0.22	frequency=1	ks_quality_p_value=0.582995	major_base=T	major_cov=10/13	major_frequency=8.846e-01	minor_base=G	minor_cov=3/0	new_cov=10/13	polymorphism_frequency=8.846e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=3/0	total_cov=14/13
RA	247	.	NC_000913	2942663	0	G	A	bias_e_value=4580350	bias_p_value=0.986793	consensus_score=68.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.841943	major_base=A	major_cov=11/14	major_frequency=8.065e-01	minor_base=G	minor_cov=3/3	new_cov=11/14	polymorphism_frequency=8.065e-01	polymorphism_score=8.8	prediction=consensus	ref_cov=3/3	total_cov=14/17
RA	248	.	NC_000913	3152494	0	G	T	bias_e_value=2312850	bias_p_value=0.498281	consensus_score=46.1	fisher_strand_p_value=0.569231	frequency=1	ks_quality_p_value=0.326159	major_base=T	major_cov=14/10	major_frequency=8.889e-01	minor_base=G	minor_cov=1/2	new_cov=14/10	polymorphism_frequency=8.889e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=1/2	total_cov=15/13
RA	249	.	NC_000913	3207549	0	G	.	consensus_score=169.3	frequency=1	major_base=.	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	250	.	NC_000913	3329743	0	G	T	consensus_score=132.4	frequency=1	major_base=T	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	251	.	NC_000913	3388041	0	T	G	consensus_score=104.4	frequency=1	major_base=G	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	252	.	NC_000913	3560443	0	C	G	bias_e_value=4497430	bias_p_value=0.968928	consensus_score=61.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.7613	major_base=G	major_cov=10/12	major_frequency=9.167e-01	minor_base=C	minor_cov=1/1	new_cov=10/12	polymorphism_frequency=9.167e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=1/1	total_cov=11/13
RA	253	.	NC_000913	3560455	1	.	G	consensus_score=68.3	frequency=1	major_base=G	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	254	.	NC_000913	3683483	0	G	T	bias_e_value=2257570	bias_p_value=0.486371	consensus_score=68.1	fisher_strand_p_value=0.434783	frequency=1	ks_quality_p_value=0.410932	major_base=T	major_cov=9/13	major_frequency=9.565e-01	minor_base=G	minor_cov=1/0	new_cov=9/13	polymorphism_frequency=9.565e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/0	total_cov=10/13
RA	255	.	NC_000913	3707878	0	A	G	bias_e_value=2958020	bias_p_value=0.637278	consensus_score=37.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.280666	major_base=G	major_cov=7/8	major_frequency=8.824e-01	minor_base=A	minor_cov=1/1	new_cov=7/8	polymorphism_frequency=8.824e-01	polymorphism_score=-0.7	prediction=consensus	ref_cov=1/1	total_cov=8/9
RA	256	.	NC_000913	3707883	0	G	A	bias_e_value=3806260	bias_p_value=0.820022	consensus_score=36.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.463649	major_base=A	major_cov=7/8	major_frequency=8.824e-01	minor_base=G	minor_cov=1/1	new_cov=7/8	polymorphism_frequency=8.824e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=1/1	total_cov=8/9
RA	257	.	NC_000913	3707947	0	C	A	consensus_score=39.1	frequency=1	major_base=A	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	258	.	NC_000913	3725176	0	T	G	consensus_score=133.3	frequency=1	major_base=G	major_cov=20/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/24
RA	259	.	NC_000913	3815883	1	.	C	bias_e_value=1010640	bias_p_value=0.217734	consensus_score=141.9	fisher_strand_p_value=0.514799	frequency=1	ks_quality_p_value=0.108995	major_base=C	major_cov=25/17	major_frequency=9.545e-01	minor_base=.	minor_cov=2/0	new_cov=25/17	polymorphism_frequency=9.545e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=2/0	total_cov=27/17
RA	260	.	NC_000913	4124368	0	A	T	bias_e_value=1123790	bias_p_value=0.242109	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.3	fisher_strand_p_value=0.0731728	frequency=5.806e-01	ks_quality_p_value=0.885513	major_base=T	major_cov=6/12	major_frequency=5.806e-01	minor_base=A	minor_cov=9/4	new_cov=6/12	polymorphism_frequency=5.806e-01	polymorphism_score=36.4	prediction=polymorphism	ref_cov=9/4	total_cov=15/16
RA	261	.	NC_000913	4154691	0	G	A	bias_e_value=3664610	bias_p_value=0.789506	consensus_score=74.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.425993	major_base=A	major_cov=9/16	major_frequency=9.259e-01	minor_base=G	minor_cov=1/1	new_cov=9/16	polymorphism_frequency=9.259e-01	polymorphism_score=-0.7	prediction=consensus	ref_cov=1/1	total_cov=10/17
RA	262	.	NC_000913	4182576	0	T	G	bias_e_value=3932720	bias_p_value=0.847267	consensus_score=163.3	fisher_strand_p_value=0.549235	frequency=1	ks_quality_p_value=0.912183	major_base=G	major_cov=17/30	major_frequency=9.400e-01	minor_base=T	minor_cov=2/1	new_cov=17/30	polymorphism_frequency=9.400e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=2/1	total_cov=19/31
RA	263	.	NC_000913	4182782	0	A	T	bias_e_value=3880010	bias_p_value=0.835912	consensus_score=167.3	fisher_strand_p_value=0.610978	frequency=1	ks_quality_p_value=0.793727	major_base=T	major_cov=26/25	major_frequency=9.273e-01	minor_base=A	minor_cov=1/3	new_cov=26/25	polymorphism_frequency=9.273e-01	polymorphism_score=3.4	prediction=consensus	ref_cov=1/3	total_cov=27/28
RA	264	.	NC_000913	4212973	0	T	.	consensus_score=20.3	frequency=1	major_base=.	major_cov=4/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/4
RA	265	.	NC_000913	4220685	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=23.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=5/4	major_frequency=9.000e-01	minor_base=A	minor_cov=0/1	new_cov=5/4	polymorphism_frequency=9.000e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/1	total_cov=5/5
RA	266	.	NC_000913	4223638	0	T	C	consensus_score=79.2	frequency=1	major_base=C	major_cov=8/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/19
RA	267	.	NC_000913	4287464	0	T	A	consensus_score=62.6	frequency=1	major_base=A	major_cov=5/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/14
RA	268	.	NC_000913	4296380	1	.	C	consensus_score=87.7	frequency=1	major_base=C	major_cov=8/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/24
RA	269	.	NC_000913	4296380	2	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=88.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=8/23	major_frequency=9.688e-01	minor_base=T	minor_cov=0/1	new_cov=8/23	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/24
RA	270	.	NC_000913	4325644	0	C	T	consensus_score=90.5	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	271	.	NC_000913	4331890	0	C	T	bias_e_value=3371360	bias_p_value=0.726327	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.0	fisher_strand_p_value=1	frequency=2.308e-01	ks_quality_p_value=0.358567	major_base=C	major_cov=6/14	major_frequency=7.692e-01	minor_base=T	minor_cov=1/5	new_cov=1/5	polymorphism_frequency=2.308e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=6/14	total_cov=7/19
RA	272	.	NC_000913	4473900	0	C	T	consensus_score=117.7	frequency=1	major_base=T	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	273	.	NC_000913	4475493	0	T	C	consensus_score=47.9	frequency=1	major_base=C	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	274	.	NC_000913	4510238	0	T	G	consensus_score=85.8	frequency=1	major_base=G	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	275	.	NC_000913	4532409	0	T	G	bias_e_value=3989210	bias_p_value=0.859438	consensus_score=135.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.519078	major_base=G	major_cov=26/15	major_frequency=9.535e-01	minor_base=T	minor_cov=1/1	new_cov=26/15	polymorphism_frequency=9.535e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=27/16
RA	276	.	NC_000913	4546601	0	C	T	consensus_score=83.2	frequency=1	major_base=T	major_cov=16/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/10
RA	277	.	NC_000913	4636925	0	G	C	bias_e_value=3766320	bias_p_value=0.811419	consensus_score=138.2	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.995781	major_base=C	major_cov=19/24	major_frequency=9.773e-01	minor_base=A	minor_cov=1/0	new_cov=19/24	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/24
RA	278	.	NC_000913	4638240	0	G	A	bias_e_value=4489840	bias_p_value=0.967293	consensus_score=99.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.755391	major_base=A	major_cov=16/17	major_frequency=9.429e-01	minor_base=G	minor_cov=1/1	new_cov=16/17	polymorphism_frequency=9.429e-01	polymorphism_score=-0.9	prediction=consensus	ref_cov=1/1	total_cov=17/18
MC	279	.	NC_000913	256108	276207	0	0	left_inside_cov=0	left_outside_cov=19	right_inside_cov=3	right_outside_cov=4
MC	280	.	NC_000913	276327	277862	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	281	.	NC_000913	278520	280401	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	282	.	NC_000913	280407	283542	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	283	.	NC_000913	283747	286678	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	284	.	NC_000913	286689	288754	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	285	.	NC_000913	288812	292082	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	286	.	NC_000913	292480	297948	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	287	.	NC_000913	298184	300199	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	288	.	NC_000913	300414	304655	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	289	.	NC_000913	304762	306375	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	290	.	NC_000913	306603	306992	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	291	.	NC_000913	307215	315228	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=36
MC	292	.	NC_000913	316631	318801	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	293	.	NC_000913	318948	319492	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	294	.	NC_000913	319528	320268	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=5
MC	295	.	NC_000913	320364	322014	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	296	.	NC_000913	322162	323474	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	297	.	NC_000913	323754	324911	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	298	.	NC_000913	325046	325714	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	299	.	NC_000913	325782	326191	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	300	.	NC_000913	326681	329238	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=3	right_outside_cov=5
MC	301	.	NC_000913	329337	329997	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	302	.	NC_000913	330529	333251	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	303	.	NC_000913	333744	335507	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	304	.	NC_000913	335619	336263	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	305	.	NC_000913	336651	338742	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	306	.	NC_000913	338814	339631	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	307	.	NC_000913	339898	341867	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=3	right_outside_cov=4
MC	308	.	NC_000913	343314	344205	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	309	.	NC_000913	344419	344956	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=1	right_outside_cov=5
MC	310	.	NC_000913	345181	348131	0	0	left_inside_cov=2	left_outside_cov=6	right_inside_cov=3	right_outside_cov=4
MC	311	.	NC_000913	348521	349826	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	312	.	NC_000913	351863	353099	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	313	.	NC_000913	353352	356768	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	314	.	NC_000913	357317	358865	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	315	.	NC_000913	358915	362651	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	316	.	NC_000913	362820	363319	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=5
MC	317	.	NC_000913	363764	364878	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	318	.	NC_000913	365860	366180	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	319	.	NC_000913	366508	368338	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=5
MC	320	.	NC_000913	368438	369290	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	321	.	NC_000913	369344	369860	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	322	.	NC_000913	370018	370384	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	323	.	NC_000913	683091	685401	0	0	left_inside_cov=1	left_outside_cov=21	right_inside_cov=3	right_outside_cov=4
MC	324	.	NC_000913	685574	686213	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=2	right_outside_cov=4
MC	325	.	NC_000913	686415	688817	0	971	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=5
MC	326	.	NC_000913	707978	708059	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	327	.	NC_000913	1196323	1211412	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=0	right_outside_cov=4
MC	328	.	NC_000913	1813186	1813301	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	329	.	NC_000913	1978503	1979278	767	0	left_inside_cov=0	left_outside_cov=16	right_inside_cov=0	right_outside_cov=16
MC	330	.	NC_000913	2011986	2012155	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	331	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=35	right_inside_cov=3	right_outside_cov=37
MC	332	.	NC_000913	2878205	2878332	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	333	.	NC_000913	2903741	2903941	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	334	.	NC_000913	2995173	2995242	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	335	.	NC_000913	3268755	3268942	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	336	.	NC_000913	3269074	3269271	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	337	.	NC_000913	3423873	3424428	358	190	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	338	.	NC_000913	3798896	3799280	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	339	.	NC_000913	4035362	4036852	360	1117	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	340	.	NC_000913	4166879	4168497	1340	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
JC	341	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=242	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=209	max_left_minus=209	max_left_plus=182	max_min_left=123	max_min_left_minus=123	max_min_left_plus=98	max_min_right=106	max_min_right_minus=106	max_min_right_plus=68	max_pos_hash_score=486	max_right=241	max_right_minus=241	max_right_plus=234	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.55	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	342	.	NC_000913	15911	-1	NC_000913	15922	1	-9	alignment_overlap=-9	coverage_minus=0	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=233	key=NC_000913__15911__-1__NC_000913__15922__1__-9__TTTTTTCAA__251__251__1__1	max_left=142	max_left_minus=0	max_left_plus=142	max_min_left=111	max_min_left_minus=0	max_min_left_plus=111	max_min_right=118	max_min_right_minus=0	max_min_right_plus=118	max_pos_hash_score=468	max_right=238	max_right_minus=0	max_right_plus=238	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.17	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=6	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6	unique_read_sequence=TTTTTTCAA
JC	343	.	NC_000913	256107	-1	NC_000913	371382	1	0	alignment_overlap=8	coverage_minus=7	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__256107__-1__NC_000913__371374__1__8____251__251__0__0	max_left=239	max_left_minus=232	max_left_plus=239	max_min_left=116	max_min_left_minus=97	max_min_left_plus=116	max_min_right=111	max_min_right_minus=87	max_min_right_plus=111	max_pos_hash_score=470	max_right=199	max_right_minus=157	max_right_plus=199	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.54	new_junction_read_count=19	polymorphism_frequency=9.744e-01	pos_hash_score=18	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=19
JC	344	.	NC_000913	275149	-1	NC_000913	1271660	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__275149__-1__NC_000913__1271660__-1__0____251__251__1__0	max_left=242	max_left_minus=242	max_left_plus=237	max_min_left=109	max_min_left_minus=109	max_min_left_plus=85	max_min_right=123	max_min_right_minus=95	max_min_right_plus=123	max_pos_hash_score=486	max_right=248	max_right_minus=242	max_right_plus=248	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	345	.	NC_000913	315229	1	NC_000913	3429986	1	-1	alignment_overlap=-1	coverage_minus=13	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__315229__1__NC_000913__3429986__1__-1__T__251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=241	max_min_left=115	max_min_left_minus=110	max_min_left_plus=115	max_min_right=115	max_min_right_minus=115	max_min_right_plus=76	max_pos_hash_score=484	max_right=241	max_right_minus=213	max_right_plus=241	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.92	new_junction_read_count=33	polymorphism_frequency=9.154e-01	pos_hash_score=33	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.08	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=33	unique_read_sequence=T
JC	346	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=5.142e-01	junction_possible_overlap_registers=240	key=NC_000913__566774__-1__NC_000913__568034__1__2____251__251__0__0	max_left=236	max_left_minus=224	max_left_plus=236	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=113	max_min_right_minus=104	max_min_right_plus=113	max_pos_hash_score=482	max_right=113	max_right_minus=104	max_right_plus=113	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=1.09	new_junction_read_count=39	polymorphism_frequency=5.142e-01	pos_hash_score=22	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=2	side_1_possible_overlap_registers=242	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=24
JC	347	.	NC_000913	683090	-1	NC_000913	687851	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__683090__-1__NC_000913__687851__1__0____251__251__0__1	max_left=236	max_left_minus=216	max_left_plus=236	max_min_left=121	max_min_left_minus=121	max_min_left_plus=112	max_min_right=114	max_min_right_minus=114	max_min_right_plus=32	max_pos_hash_score=486	max_right=245	max_right_minus=245	max_right_plus=229	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.55	new_junction_read_count=20	polymorphism_frequency=9.524e-01	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	348	.	NC_000913	1094245	1	NC_000913	3429990	-1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__1094245__1__NC_000913__3429991__-1__1____251__251__1__0	max_left=247	max_left_minus=245	max_left_plus=247	max_min_left=122	max_min_left_minus=94	max_min_left_plus=122	max_min_right=122	max_min_right_minus=104	max_min_right_plus=122	max_pos_hash_score=484	max_right=243	max_right_minus=241	max_right_plus=243	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=42	polymorphism_frequency=9.320e-01	pos_hash_score=39	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.09	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=39
JC	349	.	NC_000913	1271657	1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1271657__1__NC_000913__2101749__1__0____251__251__0__1	max_left=172	max_left_minus=172	max_left_plus=146	max_min_left=116	max_min_left_minus=109	max_min_left_plus=116	max_min_right=105	max_min_right_minus=95	max_min_right_plus=105	max_pos_hash_score=486	max_right=245	max_right_minus=245	max_right_plus=224	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.50	new_junction_read_count=18	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	350	.	NC_000913	1397238	-1	NC_000913	1907641	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1397238__-1__NC_000913__1907641__1__0____251__251__1__0	max_left=237	max_left_minus=182	max_left_plus=237	max_min_left=98	max_min_left_minus=96	max_min_left_plus=98	max_min_right=84	max_min_right_minus=69	max_min_right_plus=84	max_pos_hash_score=486	max_right=245	max_right_minus=155	max_right_plus=245	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.36	new_junction_read_count=13	polymorphism_frequency=1.000e+00	pos_hash_score=12	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=12
JC	351	.	NC_000913	1907644	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1907644__-1__NC_000913__2290113__-1__0____251__251__0__1	max_left=250	max_left_minus=232	max_left_plus=250	max_min_left=124	max_min_left_minus=123	max_min_left_plus=124	max_min_right=107	max_min_right_minus=107	max_min_right_plus=64	max_pos_hash_score=486	max_right=238	max_right_minus=238	max_right_plus=221	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.75	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	352	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=8	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____251__251__0__0	max_left=236	max_left_minus=186	max_left_plus=236	max_min_left=100	max_min_left_minus=63	max_min_left_plus=100	max_min_right=78	max_min_right_minus=78	max_min_right_plus=49	max_pos_hash_score=470	max_right=199	max_right_minus=191	max_right_plus=199	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.46	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=16
JC	353	.	NC_000913	1978503	1	NC_000913	2175525	1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1978503__1__NC_000913__2175525__1__0____251__251__1__0	max_left=232	max_left_minus=223	max_left_plus=232	max_min_left=64	max_min_left_minus=62	max_min_left_plus=64	max_min_right=124	max_min_right_minus=111	max_min_right_plus=124	max_pos_hash_score=486	max_right=247	max_right_minus=247	max_right_plus=241	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.91	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	354	.	NC_000913	1978503	1	NC_000913	4542469	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1978503__1__NC_000913__4542469__1__0____251__251__1__0	max_left=248	max_left_minus=243	max_left_plus=248	max_min_left=106	max_min_left_minus=100	max_min_left_plus=106	max_min_right=116	max_min_right_minus=87	max_min_right_plus=116	max_pos_hash_score=486	max_right=190	max_right_minus=177	max_right_plus=190	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.66	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=233	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	355	.	NC_000913	2170171	1	NC_000913	2468300	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__2170171__1__NC_000913__2468300__-1__0____251__251__1__0	max_left=249	max_left_minus=249	max_left_plus=242	max_min_left=117	max_min_left_minus=112	max_min_left_plus=117	max_min_right=125	max_min_right_minus=125	max_min_right_plus=111	max_pos_hash_score=486	max_right=245	max_right_minus=245	max_right_plus=238	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33
JC	356	.	NC_000913	2171428	-1	NC_000913	2468298	1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__2171428__-1__NC_000913__2468297__1__1____251__251__1__0	max_left=248	max_left_minus=245	max_left_plus=248	max_min_left=103	max_min_left_minus=73	max_min_left_plus=103	max_min_right=124	max_min_right_minus=124	max_min_right_plus=89	max_pos_hash_score=484	max_right=244	max_right_minus=244	max_right_plus=233	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.75	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	357	.	NC_000913	2173734	1	NC_000913	3584195	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.143e-01	junction_possible_overlap_registers=242	key=NC_000913__2173734__1__NC_000913__3584195__-1__0____251__251__0__1	max_left=181	max_left_minus=181	max_left_plus=147	max_min_left=103	max_min_left_minus=103	max_min_left_plus=58	max_min_right=104	max_min_right_minus=70	max_min_right_plus=104	max_pos_hash_score=486	max_right=192	max_right_minus=148	max_right_plus=192	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.143e-01	pos_hash_score=4	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	358	.	NC_000913	2175532	-1	NC_000913	3583428	1	0	alignment_overlap=3	coverage_minus=21	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__2175535__-1__NC_000913__3583428__1__3____251__251__0__1	max_left=217	max_left_minus=197	max_left_plus=217	max_min_left=117	max_min_left_minus=117	max_min_left_plus=104	max_min_right=112	max_min_right_minus=112	max_min_right_plus=112	max_pos_hash_score=480	max_right=241	max_right_minus=240	max_right_plus=241	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=8	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=231	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=3	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=33
JC	359	.	NC_000913	2288919	1	NC_000913	3189675	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__2288919__1__NC_000913__3189675__-1__0____251__251__1__0	max_left=240	max_left_minus=232	max_left_plus=240	max_min_left=123	max_min_left_minus=66	max_min_left_plus=123	max_min_right=125	max_min_right_minus=124	max_min_right_plus=125	max_pos_hash_score=486	max_right=247	max_right_minus=247	max_right_plus=224	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.91	new_junction_read_count=33	polymorphism_frequency=9.701e-01	pos_hash_score=30	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=32
JC	360	.	NC_000913	2288919	1	NC_000913	3902169	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__2288919__1__NC_000913__3902169__1__0____251__251__1__0	max_left=245	max_left_minus=245	max_left_plus=236	max_min_left=115	max_min_left_minus=106	max_min_left_plus=115	max_min_right=118	max_min_right_minus=94	max_min_right_plus=118	max_pos_hash_score=486	max_right=237	max_right_minus=237	max_right_plus=226	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=32	polymorphism_frequency=9.402e-01	pos_hash_score=30	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=32
JC	361	.	NC_000913	2290113	-1	NC_000913	3189672	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__2290113__-1__NC_000913__3189672__1__0____251__251__1__0	max_left=240	max_left_minus=168	max_left_plus=240	max_min_left=113	max_min_left_minus=113	max_min_left_plus=110	max_min_right=115	max_min_right_minus=114	max_min_right_plus=115	max_pos_hash_score=486	max_right=233	max_right_minus=209	max_right_plus=233	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.64	new_junction_read_count=23	polymorphism_frequency=9.577e-01	pos_hash_score=22	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=23
JC	362	.	NC_000913	2290113	-1	NC_000913	3902172	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__2290113__-1__NC_000913__3902172__-1__0____251__251__1__0	max_left=243	max_left_minus=242	max_left_plus=243	max_min_left=124	max_min_left_minus=112	max_min_left_plus=124	max_min_right=112	max_min_right_minus=96	max_min_right_plus=112	max_pos_hash_score=486	max_right=240	max_right_minus=209	max_right_plus=240	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.91	new_junction_read_count=33	polymorphism_frequency=9.420e-01	pos_hash_score=31	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=32
JC	363	.	NC_000913	2375828	1	NC_000913	2514273	1	0	alignment_overlap=4	coverage_minus=8	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__2375824__1__NC_000913__2514273__1__4____251__251__0__1	max_left=245	max_left_minus=134	max_left_plus=245	max_min_left=118	max_min_left_minus=102	max_min_left_plus=118	max_min_right=119	max_min_right_minus=110	max_min_right_plus=119	max_pos_hash_score=478	max_right=243	max_right_minus=243	max_right_plus=231	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.79	new_junction_read_count=28	polymorphism_frequency=9.323e-01	pos_hash_score=27	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.06	side_1_overlap=0	side_1_possible_overlap_registers=234	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=4	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	364	.	NC_000913	2375831	-1	NC_000913	2515617	-1	0	alignment_overlap=4	coverage_minus=18	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__2375835__-1__NC_000913__2515617__-1__4____251__251__0__1	max_left=226	max_left_minus=221	max_left_plus=226	max_min_left=111	max_min_left_minus=111	max_min_left_plus=110	max_min_right=118	max_min_right_minus=118	max_min_right_plus=95	max_pos_hash_score=478	max_right=240	max_right_minus=237	max_right_plus=240	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=44	polymorphism_frequency=9.774e-01	pos_hash_score=40	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=234	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=4	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=43
JC	365	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=20	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=239	max_left_minus=236	max_left_plus=239	max_min_left=116	max_min_left_minus=116	max_min_left_plus=99	max_min_right=112	max_min_right_minus=97	max_min_right_plus=112	max_pos_hash_score=470	max_right=238	max_right_minus=238	max_right_plus=235	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33
JC	366	.	NC_000913	2878218	-1	NC_000913	2878281	1	0	alignment_overlap=29	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=NC_000913__2878218__-1__NC_000913__2878252__1__29____251__251__0__0	max_left=190	max_left_minus=127	max_left_plus=190	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=95	max_min_right_minus=95	max_min_right_plus=95	max_pos_hash_score=428	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.09	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=29	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	367	.	NC_000913	3350556	1	NC_000913	3583428	1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3350556__1__NC_000913__3583428__1__0____251__251__0__1	max_left=238	max_left_minus=215	max_left_plus=238	max_min_left=124	max_min_left_minus=124	max_min_left_plus=118	max_min_right=105	max_min_right_minus=98	max_min_right_plus=105	max_pos_hash_score=486	max_right=232	max_right_minus=232	max_right_plus=224	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.94	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=8	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=234	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=34
JC	368	.	NC_000913	3350563	-1	NC_000913	3584195	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3350563__-1__NC_000913__3584195__-1__0____251__251__0__1	max_left=246	max_left_minus=241	max_left_plus=246	max_min_left=107	max_min_left_minus=102	max_min_left_plus=107	max_min_right=122	max_min_right_minus=122	max_min_right_plus=107	max_pos_hash_score=486	max_right=237	max_right_minus=205	max_right_plus=237	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.78	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	read_count_offset=8	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=234	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	369	.	NC_000913	3583428	1	NC_000913	3888877	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3583428__1__NC_000913__3888877__-1__0____251__251__1__0	max_left=241	max_left_minus=241	max_left_plus=223	max_min_left=116	max_min_left_minus=116	max_min_left_plus=116	max_min_right=122	max_min_right_minus=73	max_min_right_plus=122	max_pos_hash_score=486	max_right=238	max_right_minus=238	max_right_plus=238	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.66	new_junction_read_count=24	polymorphism_frequency=8.221e-01	pos_hash_score=23	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.14	side_2_overlap=0	side_2_possible_overlap_registers=233	side_2_read_count=5	side_2_redundant=0	total_non_overlap_reads=24
JC	370	.	NC_000913	3583428	1	NC_000913	4542477	-1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__3583428__1__NC_000913__4542478__-1__1____251__251__1__0	max_left=247	max_left_minus=247	max_left_plus=240	max_min_left=115	max_min_left_minus=115	max_min_left_plus=95	max_min_right=118	max_min_right_minus=118	max_min_right_plus=84	max_pos_hash_score=484	max_right=247	max_right_minus=247	max_right_plus=172	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.67	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=232	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24
JC	371	.	NC_000913	3584195	-1	NC_000913	3888869	1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3584195__-1__NC_000913__3888869__1__0____251__251__1__0	max_left=248	max_left_minus=199	max_left_plus=248	max_min_left=124	max_min_left_minus=115	max_min_left_plus=124	max_min_right=118	max_min_right_minus=118	max_min_right_plus=67	max_pos_hash_score=486	max_right=233	max_right_minus=233	max_right_plus=232	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=40	polymorphism_frequency=8.851e-01	pos_hash_score=39	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.14	side_2_overlap=0	side_2_possible_overlap_registers=233	side_2_read_count=5	side_2_redundant=0	total_non_overlap_reads=40
JC	372	.	NC_000913	3755732	-1	NC_000913	3755736	1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3755732__-1__NC_000913__3755736__1__0____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=232	max_min_left=108	max_min_left_minus=108	max_min_left_plus=102	max_min_right=125	max_min_right_minus=111	max_min_right_plus=125	max_pos_hash_score=486	max_right=249	max_right_minus=249	max_right_plus=240	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=42	polymorphism_frequency=8.750e-01	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.17	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.17	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=42
JC	373	.	NC_000913	4491693	-1	NC_000913	4492415	1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=9.631e-02	junction_possible_overlap_registers=237	key=NC_000913__4491693__-1__NC_000913__4492410__1__5____251__251__0__0	max_left=42	max_left_minus=42	max_left_plus=42	max_min_left=42	max_min_left_minus=42	max_min_left_plus=42	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=476	max_right=244	max_right_minus=100	max_right_plus=244	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=9.631e-02	pos_hash_score=3	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=5	side_1_possible_overlap_registers=242	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=23	side_2_redundant=0	total_non_overlap_reads=3
UN	374	.	NC_000913	15596	15596
UN	375	.	NC_000913	15601	16505
UN	376	.	NC_000913	16508	16508
UN	377	.	NC_000913	19987	19995
UN	378	.	NC_000913	19997	19998
UN	379	.	NC_000913	20001	20009
UN	380	.	NC_000913	20012	20012
UN	381	.	NC_000913	20014	20358
UN	382	.	NC_000913	20362	20367
UN	383	.	NC_000913	20372	20372
UN	384	.	NC_000913	42243	42243
UN	385	.	NC_000913	59232	59305
UN	386	.	NC_000913	59307	59308
UN	387	.	NC_000913	59319	59319
UN	388	.	NC_000913	59325	59325
UN	389	.	NC_000913	150959	150960
UN	390	.	NC_000913	150983	150984
UN	391	.	NC_000913	223913	223913
UN	392	.	NC_000913	223919	223919
UN	393	.	NC_000913	223937	223940
UN	394	.	NC_000913	223943	224542
UN	395	.	NC_000913	224544	224548
UN	396	.	NC_000913	224550	224553
UN	397	.	NC_000913	224556	224556
UN	398	.	NC_000913	224559	224559
UN	399	.	NC_000913	224564	224564
UN	400	.	NC_000913	225109	225462
UN	401	.	NC_000913	227208	228455
UN	402	.	NC_000913	228458	228460
UN	403	.	NC_000913	238257	238258
UN	404	.	NC_000913	238260	238262
UN	405	.	NC_000913	238266	238266
UN	406	.	NC_000913	238511	238511
UN	407	.	NC_000913	238513	238514
UN	408	.	NC_000913	238516	238517
UN	409	.	NC_000913	238519	238519
UN	410	.	NC_000913	238526	238526
UN	411	.	NC_000913	238528	238537
UN	412	.	NC_000913	238539	238539
UN	413	.	NC_000913	238544	238545
UN	414	.	NC_000913	238547	238547
UN	415	.	NC_000913	238557	238557
UN	416	.	NC_000913	238571	238572
UN	417	.	NC_000913	238574	238575
UN	418	.	NC_000913	238577	238577
UN	419	.	NC_000913	238580	238581
UN	420	.	NC_000913	238585	238585
UN	421	.	NC_000913	238588	238590
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UN	1700	.	NC_000913	1803370	1803370
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UN	1722	.	NC_000913	1844743	1844746
UN	1723	.	NC_000913	1844748	1844752
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UN	1725	.	NC_000913	1844805	1844805
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UN	1727	.	NC_000913	1894193	1894194
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UN	1729	.	NC_000913	1894231	1894231
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UN	1731	.	NC_000913	1907701	1907701
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UN	1733	.	NC_000913	1907710	1907710
UN	1734	.	NC_000913	1907712	1907712
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UN	1737	.	NC_000913	1907723	1907725
UN	1738	.	NC_000913	1907730	1907730
UN	1739	.	NC_000913	1945909	1945909
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UN	1741	.	NC_000913	1958201	1958201
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UN	1744	.	NC_000913	1958215	1958215
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UN	1762	.	NC_000913	1958310	1958357
UN	1763	.	NC_000913	1978503	1979278
UN	1764	.	NC_000913	1988591	1988591
UN	1765	.	NC_000913	2011760	2011760
UN	1766	.	NC_000913	2011944	2011944
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UN	1770	.	NC_000913	2024324	2024324
UN	1771	.	NC_000913	2033744	2033900
UN	1772	.	NC_000913	2033902	2033903
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UN	1775	.	NC_000913	2033912	2033912
UN	1776	.	NC_000913	2033917	2033917
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UN	1778	.	NC_000913	2033934	2033937
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UN	1780	.	NC_000913	2033949	2033949
UN	1781	.	NC_000913	2033953	2033954
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UN	1783	.	NC_000913	2033960	2033960
UN	1784	.	NC_000913	2033963	2033963
UN	1785	.	NC_000913	2033968	2033968
UN	1786	.	NC_000913	2033976	2033976
UN	1787	.	NC_000913	2033980	2033980
UN	1788	.	NC_000913	2033983	2033983
UN	1789	.	NC_000913	2033989	2033990
UN	1790	.	NC_000913	2033997	2033997
UN	1791	.	NC_000913	2033999	2034001
UN	1792	.	NC_000913	2037621	2037626
UN	1793	.	NC_000913	2037628	2037629
UN	1794	.	NC_000913	2037636	2037636
UN	1795	.	NC_000913	2037638	2037641
UN	1796	.	NC_000913	2037644	2037644
UN	1797	.	NC_000913	2037647	2037647
UN	1798	.	NC_000913	2037649	2037649
UN	1799	.	NC_000913	2037652	2037654
UN	1800	.	NC_000913	2037656	2037656
UN	1801	.	NC_000913	2037661	2037662
UN	1802	.	NC_000913	2037682	2037682
UN	1803	.	NC_000913	2037717	2037717
UN	1804	.	NC_000913	2056629	2056629
UN	1805	.	NC_000913	2056631	2056631
UN	1806	.	NC_000913	2056634	2056637
UN	1807	.	NC_000913	2056640	2056819
UN	1808	.	NC_000913	2056831	2056831
UN	1809	.	NC_000913	2056844	2056844
UN	1810	.	NC_000913	2056864	2056864
UN	1811	.	NC_000913	2056935	2056935
UN	1812	.	NC_000913	2057652	2057652
UN	1813	.	NC_000913	2057654	2057654
UN	1814	.	NC_000913	2057657	2057657
UN	1815	.	NC_000913	2057670	2057756
UN	1816	.	NC_000913	2057758	2057758
UN	1817	.	NC_000913	2057769	2057769
UN	1818	.	NC_000913	2057840	2057840
UN	1819	.	NC_000913	2057855	2058043
UN	1820	.	NC_000913	2066942	2066945
UN	1821	.	NC_000913	2066948	2066948
UN	1822	.	NC_000913	2066950	2067096
UN	1823	.	NC_000913	2067099	2067102
UN	1824	.	NC_000913	2067104	2067105
UN	1825	.	NC_000913	2068373	2068373
UN	1826	.	NC_000913	2068395	2068395
UN	1827	.	NC_000913	2068401	2068401
UN	1828	.	NC_000913	2069120	2069120
UN	1829	.	NC_000913	2069123	2070084
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UN	1831	.	NC_000913	2070092	2070098
UN	1832	.	NC_000913	2070100	2070100
UN	1833	.	NC_000913	2085243	2085243
UN	1834	.	NC_000913	2099402	2099402
UN	1835	.	NC_000913	2099411	2099450
UN	1836	.	NC_000913	2099768	2099768
UN	1837	.	NC_000913	2099770	2099770
UN	1838	.	NC_000913	2099772	2099772
UN	1839	.	NC_000913	2099779	2099781
UN	1840	.	NC_000913	2099783	2099784
UN	1841	.	NC_000913	2099790	2099790
UN	1842	.	NC_000913	2099795	2099796
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UN	1844	.	NC_000913	2099807	2099808
UN	1845	.	NC_000913	2099818	2099818
UN	1846	.	NC_000913	2101864	2101864
UN	1847	.	NC_000913	2101868	2101868
UN	1848	.	NC_000913	2101872	2101872
UN	1849	.	NC_000913	2101878	2101878
UN	1850	.	NC_000913	2101880	2101880
UN	1851	.	NC_000913	2101884	2101884
UN	1852	.	NC_000913	2101887	2101887
UN	1853	.	NC_000913	2101889	2101889
UN	1854	.	NC_000913	2101898	2101898
UN	1855	.	NC_000913	2101900	2101905
UN	1856	.	NC_000913	2101907	2101907
UN	1857	.	NC_000913	2101909	2102763
UN	1858	.	NC_000913	2102766	2102771
UN	1859	.	NC_000913	2102773	2102773
UN	1860	.	NC_000913	2102776	2102783
UN	1861	.	NC_000913	2102785	2102787
UN	1862	.	NC_000913	2102813	2102813
UN	1863	.	NC_000913	2103190	2103191
UN	1864	.	NC_000913	2103196	2103196
UN	1865	.	NC_000913	2103205	2103205
UN	1866	.	NC_000913	2103209	2103209
UN	1867	.	NC_000913	2103211	2103211
UN	1868	.	NC_000913	2103213	2103220
UN	1869	.	NC_000913	2103222	2103223
UN	1870	.	NC_000913	2103231	2103235
UN	1871	.	NC_000913	2103237	2103237
UN	1872	.	NC_000913	2103239	2103245
UN	1873	.	NC_000913	2103248	2103251
UN	1874	.	NC_000913	2103253	2103293
UN	1875	.	NC_000913	2103297	2103299
UN	1876	.	NC_000913	2103301	2103302
UN	1877	.	NC_000913	2103304	2103307
UN	1878	.	NC_000913	2103312	2103312
UN	1879	.	NC_000913	2103314	2103314
UN	1880	.	NC_000913	2103317	2103317
UN	1881	.	NC_000913	2103321	2103321
UN	1882	.	NC_000913	2103521	2103521
UN	1883	.	NC_000913	2103531	2103531
UN	1884	.	NC_000913	2103533	2103533
UN	1885	.	NC_000913	2103543	2103544
UN	1886	.	NC_000913	2103555	2103563
UN	1887	.	NC_000913	2103568	2103568
UN	1888	.	NC_000913	2103571	2103571
UN	1889	.	NC_000913	2103575	2103785
UN	1890	.	NC_000913	2103846	2103846
UN	1891	.	NC_000913	2103869	2103869
UN	1892	.	NC_000913	2103873	2103899
UN	1893	.	NC_000913	2103973	2104258
UN	1894	.	NC_000913	2104262	2104262
UN	1895	.	NC_000913	2104269	2104270
UN	1896	.	NC_000913	2104273	2104278
UN	1897	.	NC_000913	2104318	2104318
UN	1898	.	NC_000913	2104378	2104378
UN	1899	.	NC_000913	2106047	2106345
UN	1900	.	NC_000913	2106354	2106354
UN	1901	.	NC_000913	2106360	2106360
UN	1902	.	NC_000913	2106418	2106418
UN	1903	.	NC_000913	2106447	2106447
UN	1904	.	NC_000913	2106450	2106450
UN	1905	.	NC_000913	2106489	2106490
UN	1906	.	NC_000913	2106606	2106606
UN	1907	.	NC_000913	2106643	2106643
UN	1908	.	NC_000913	2106646	2106646
UN	1909	.	NC_000913	2108535	2108535
UN	1910	.	NC_000913	2108544	2108934
UN	1911	.	NC_000913	2108936	2108936
UN	1912	.	NC_000913	2108938	2108950
UN	1913	.	NC_000913	2108952	2108958
UN	1914	.	NC_000913	2108961	2108961
UN	1915	.	NC_000913	2108964	2109017
UN	1916	.	NC_000913	2109033	2109033
UN	1917	.	NC_000913	2109044	2109045
UN	1918	.	NC_000913	2109053	2109053
UN	1919	.	NC_000913	2109060	2109060
UN	1920	.	NC_000913	2109072	2109073
UN	1921	.	NC_000913	2109381	2109381
UN	1922	.	NC_000913	2109486	2109486
UN	1923	.	NC_000913	2137355	2137355
UN	1924	.	NC_000913	2137396	2137396
UN	1925	.	NC_000913	2149947	2149947
UN	1926	.	NC_000913	2151548	2151548
UN	1927	.	NC_000913	2151554	2151554
UN	1928	.	NC_000913	2151556	2151556
UN	1929	.	NC_000913	2151565	2151565
UN	1930	.	NC_000913	2151568	2151568
UN	1931	.	NC_000913	2151570	2151570
UN	1932	.	NC_000913	2151572	2151572
UN	1933	.	NC_000913	2151578	2151579
UN	1934	.	NC_000913	2151585	2151585
UN	1935	.	NC_000913	2151594	2151594
UN	1936	.	NC_000913	2151601	2151601
UN	1937	.	NC_000913	2151603	2151603
UN	1938	.	NC_000913	2151608	2151608
UN	1939	.	NC_000913	2151614	2151614
UN	1940	.	NC_000913	2151622	2151624
UN	1941	.	NC_000913	2151627	2151627
UN	1942	.	NC_000913	2151629	2151630
UN	1943	.	NC_000913	2151636	2151644
UN	1944	.	NC_000913	2151647	2151647
UN	1945	.	NC_000913	2151649	2151649
UN	1946	.	NC_000913	2151653	2151656
UN	1947	.	NC_000913	2151658	2151658
UN	1948	.	NC_000913	2151661	2151662
UN	1949	.	NC_000913	2151665	2151665
UN	1950	.	NC_000913	2151667	2151668
UN	1951	.	NC_000913	2151673	2151673
UN	1952	.	NC_000913	2151676	2151676
UN	1953	.	NC_000913	2151679	2151681
UN	1954	.	NC_000913	2151684	2151684
UN	1955	.	NC_000913	2151686	2151686
UN	1956	.	NC_000913	2151688	2151691
UN	1957	.	NC_000913	2151693	2151694
UN	1958	.	NC_000913	2151713	2151713
UN	1959	.	NC_000913	2151738	2151738
UN	1960	.	NC_000913	2168236	2168241
UN	1961	.	NC_000913	2168244	2168245
UN	1962	.	NC_000913	2168253	2168253
UN	1963	.	NC_000913	2170328	2170328
UN	1964	.	NC_000913	2170336	2170336
UN	1965	.	NC_000913	2170341	2170343
UN	1966	.	NC_000913	2170351	2170351
UN	1967	.	NC_000913	2170354	2170354
UN	1968	.	NC_000913	2170357	2170357
UN	1969	.	NC_000913	2170359	2170359
UN	1970	.	NC_000913	2170362	2171226
UN	1971	.	NC_000913	2171228	2171229
UN	1972	.	NC_000913	2171231	2171232
UN	1973	.	NC_000913	2171236	2171237
UN	1974	.	NC_000913	2171241	2171241
UN	1975	.	NC_000913	2192095	2192124
UN	1976	.	NC_000913	2192198	2192198
UN	1977	.	NC_000913	2192210	2192210
UN	1978	.	NC_000913	2192213	2192347
UN	1979	.	NC_000913	2192411	2192411
UN	1980	.	NC_000913	2192439	2192439
UN	1981	.	NC_000913	2229178	2229178
UN	1982	.	NC_000913	2229182	2229183
UN	1983	.	NC_000913	2229185	2229185
UN	1984	.	NC_000913	2229189	2229190
UN	1985	.	NC_000913	2229193	2229195
UN	1986	.	NC_000913	2229198	2229198
UN	1987	.	NC_000913	2233805	2233805
UN	1988	.	NC_000913	2233813	2233813
UN	1989	.	NC_000913	2233825	2233829
UN	1990	.	NC_000913	2289028	2289028
UN	1991	.	NC_000913	2289031	2289924
UN	1992	.	NC_000913	2303620	2303620
UN	1993	.	NC_000913	2303622	2303622
UN	1994	.	NC_000913	2303624	2303625
UN	1995	.	NC_000913	2303627	2303627
UN	1996	.	NC_000913	2303632	2303632
UN	1997	.	NC_000913	2303635	2303636
UN	1998	.	NC_000913	2303638	2303726
UN	1999	.	NC_000913	2303728	2303728
UN	2000	.	NC_000913	2303731	2303731
UN	2001	.	NC_000913	2303733	2303733
UN	2002	.	NC_000913	2303735	2303735
UN	2003	.	NC_000913	2303738	2303885
UN	2004	.	NC_000913	2382968	2382968
UN	2005	.	NC_000913	2383290	2383290
UN	2006	.	NC_000913	2383304	2383304
UN	2007	.	NC_000913	2383322	2383322
UN	2008	.	NC_000913	2383354	2383354
UN	2009	.	NC_000913	2383358	2383358
UN	2010	.	NC_000913	2383383	2383383
UN	2011	.	NC_000913	2383396	2383396
UN	2012	.	NC_000913	2383416	2383418
UN	2013	.	NC_000913	2383420	2383420
UN	2014	.	NC_000913	2383423	2383423
UN	2015	.	NC_000913	2383434	2383434
UN	2016	.	NC_000913	2383436	2383436
UN	2017	.	NC_000913	2383438	2383438
UN	2018	.	NC_000913	2383447	2383447
UN	2019	.	NC_000913	2383450	2383450
UN	2020	.	NC_000913	2383456	2383456
UN	2021	.	NC_000913	2383484	2383521
UN	2022	.	NC_000913	2383523	2383527
UN	2023	.	NC_000913	2383529	2383530
UN	2024	.	NC_000913	2383533	2383535
UN	2025	.	NC_000913	2383537	2383538
UN	2026	.	NC_000913	2383540	2383540
UN	2027	.	NC_000913	2383542	2383542
UN	2028	.	NC_000913	2383546	2383546
UN	2029	.	NC_000913	2383551	2383553
UN	2030	.	NC_000913	2383558	2383558
UN	2031	.	NC_000913	2383560	2383560
UN	2032	.	NC_000913	2383562	2383563
UN	2033	.	NC_000913	2383570	2383570
UN	2034	.	NC_000913	2383572	2383573
UN	2035	.	NC_000913	2383575	2383575
UN	2036	.	NC_000913	2383579	2383579
UN	2037	.	NC_000913	2383582	2383585
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UN	3199	.	NC_000913	3799856	3799857
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