#=GENOME_DIFF	1.0
#=CREATED	18:39:26 28 Nov 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20231211run9/CV59_S15_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20231211run9/CV59_S15_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20231211run9/CV59_S15_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20231211run9/CV59_S15_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20231211run9/CV59_S15_L001_R2_001.fastq.gz
#=CONVERTED-BASES	188752384
#=CONVERTED-READS	769976
#=INPUT-BASES	188776183
#=INPUT-READS	770138
#=MAPPED-BASES	134858128
#=MAPPED-READS	557913
DEL	1	929	NC_000913	310	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	2	930	NC_000913	393	G
SNP	3	931	NC_000913	588	A
SNP	4	932	NC_000913	774	C
SNP	5	933	NC_000913	867	T
SNP	6	934	NC_000913	939	A
SNP	7	935	NC_000913	966	C
SNP	8	936	NC_000913	969	G
SNP	9	937	NC_000913	1206	T
SNP	10	938	NC_000913	1278	T
SNP	11	939	NC_000913	1299	C
SNP	12	940	NC_000913	1302	C
SNP	13	941	NC_000913	1323	T
SNP	14	942	NC_000913	1341	G
SNP	15	943	NC_000913	1407	T
SNP	16	944	NC_000913	1425	G
SNP	17	945	NC_000913	1509	G
SNP	18	946	NC_000913	1593	G
SNP	19	947	NC_000913	1797	A
SNP	20	948	NC_000913	1860	A
SNP	21	949	NC_000913	1875	G
SNP	22	950	NC_000913	1884	A
SNP	23	951	NC_000913	2038	T
SNP	24	952	NC_000913	2108	T
SNP	25	953	NC_000913	2116	C
SNP	26	954	NC_000913	2211	T
SNP	27	955	NC_000913	2247	A
SNP	28	956	NC_000913	2307	T
SNP	29	957	NC_000913	2310	T
SNP	30	958	NC_000913	2343	T
SNP	31	959	NC_000913	2373	A
SNP	32	960	NC_000913	2382	G
SNP	33	961	NC_000913	2469	T
SNP	34	962	NC_000913	2508	G
SNP	35	963	NC_000913	2595	T
SNP	36	964	NC_000913	2597	C
SNP	37	965	NC_000913	2676	T
SNP	38	966	NC_000913	2709	G
SNP	39	967	NC_000913	2760	C
SNP	40	968	NC_000913	3025	G
SNP	41	969	NC_000913	3028	T
SNP	42	970	NC_000913	3031	C
SNP	43	971	NC_000913	3055	T
SNP	44	972	NC_000913	3073	A
SNP	45	973	NC_000913	3097	C
SNP	46	974	NC_000913	3142	T
SNP	47	975	NC_000913	3196	A
SNP	48	976	NC_000913	3199	A
SNP	49	977	NC_000913	3244	T
SNP	50	978	NC_000913	3424	T
SNP	51	979	NC_000913	3520	T
SNP	52	980	NC_000913	3547	T
SNP	53	981	NC_000913	3622	T
SNP	54	982	NC_000913	3763	T
SNP	55	983	NC_000913	3937	G
SNP	56	984	NC_000913	4102	C
SNP	57	985	NC_000913	4336	G
SNP	58	986	NC_000913	4351	G
SNP	59	987	NC_000913	4363	A
SNP	60	988	NC_000913	4420	A
SUB	61	989,990	NC_000913	4441	2	AG
SNP	62	991	NC_000913	4780	C
SNP	63	992	NC_000913	4804	G
SNP	64	993	NC_000913	4822	C
SNP	65	995	NC_000913	5183	C
SNP	66	996	NC_000913	5234	A
SNP	67	997	NC_000913	5442	C
SNP	68	998	NC_000913	5603	G
SNP	69	999	NC_000913	5642	C
SNP	70	1000	NC_000913	5732	G
SNP	71	1001	NC_000913	5806	A
SNP	72	1002	NC_000913	5851	T
SNP	73	1003	NC_000913	6106	C
SNP	74	1004	NC_000913	6239	T
SNP	75	1005	NC_000913	6349	T
SNP	76	1006	NC_000913	6502	A
SNP	77	1007	NC_000913	6574	G
SNP	78	1008	NC_000913	6595	C
SNP	79	1009	NC_000913	6748	A
SNP	80	1010	NC_000913	6850	G
SNP	81	1011	NC_000913	6898	G
SNP	82	1012	NC_000913	6933	A
SNP	83	1013	NC_000913	7132	C
SNP	84	1014	NC_000913	7297	C
SNP	85	1015	NC_000913	7342	C
SNP	86	1016	NC_000913	7384	C
SNP	87	1017	NC_000913	7395	C
SNP	88	1018	NC_000913	7414	A
SNP	89	1019	NC_000913	7456	T
SNP	90	1020	NC_000913	7459	C
SNP	91	1021	NC_000913	7474	C
SNP	92	1022	NC_000913	7479	T
SNP	93	1023	NC_000913	7498	G
SNP	94	1024	NC_000913	7598	G
SNP	95	1025	NC_000913	7600	A
SNP	96	1026	NC_000913	7618	C
SNP	97	1027	NC_000913	7624	G
SNP	98	1028	NC_000913	7627	G
SNP	99	1029	NC_000913	7681	G
SNP	100	1030	NC_000913	7711	T
SNP	101	1031	NC_000913	7939	A
SNP	102	1032	NC_000913	8963	T
SUB	103	1033,1034	NC_000913	8975	2	TA
SNP	104	1035	NC_000913	8996	T
SNP	105	1036	NC_000913	9488	A
SNP	106	1037	NC_000913	9623	A
SNP	107	1038	NC_000913	9665	T
SNP	108	1039	NC_000913	9668	T
SNP	109	1040	NC_000913	9754	C
SNP	110	1041	NC_000913	9839	A
SNP	111	1042	NC_000913	9851	T
SNP	112	1043	NC_000913	10006	A
SNP	113	1044	NC_000913	10015	A
SNP	114	1045	NC_000913	10024	A
SNP	115	1046	NC_000913	10099	A
SNP	116	1047	NC_000913	10260	A
SNP	117	1048	NC_000913	10336	G
SNP	118	1049	NC_000913	10548	A
SNP	119	1050	NC_000913	10637	A
SNP	120	1051	NC_000913	10642	G
SNP	121	1052	NC_000913	10703	T
SNP	122	1053	NC_000913	10718	A
SNP	123	1054	NC_000913	10747	A
SNP	124	1055	NC_000913	10751	T
SNP	125	1056	NC_000913	10754	G
SNP	126	1057	NC_000913	10757	C
SNP	127	1058	NC_000913	10772	A
SNP	128	1059	NC_000913	10802	C
SNP	129	1060	NC_000913	10840	A
SNP	130	1061	NC_000913	10865	G
SNP	131	1062	NC_000913	10973	A
SNP	132	1063	NC_000913	10985	G
SNP	133	1064	NC_000913	11021	C
SNP	134	1065	NC_000913	11063	T
SNP	135	1066	NC_000913	11156	A
SNP	136	1067	NC_000913	11225	T
SNP	137	1068	NC_000913	11366	T
SNP	138	1069	NC_000913	11439	G
SNP	139	1070	NC_000913	11481	A
SNP	140	1071	NC_000913	11541	A
SNP	141	1072	NC_000913	11695	A
SNP	142	1073	NC_000913	11814	A
SNP	143	1074	NC_000913	11854	G
SNP	144	1075	NC_000913	11861	T
SNP	145	1076	NC_000913	12237	T
SNP	146	1077	NC_000913	12309	G
SNP	147	1078	NC_000913	12357	C
SNP	148	1079	NC_000913	12384	C
SNP	149	1080	NC_000913	12507	C
SNP	150	1081	NC_000913	12714	T
SNP	151	1082	NC_000913	12846	T
SNP	152	1083	NC_000913	12879	C
SNP	153	1084	NC_000913	13014	G
SNP	154	1085	NC_000913	13029	T
SNP	155	1086	NC_000913	13320	G
SNP	156	1087	NC_000913	13539	G
SNP	157	1088	NC_000913	13866	A
SNP	158	1089	NC_000913	13932	G
SNP	159	1090	NC_000913	14223	A
SNP	160	1091	NC_000913	14232	A
SNP	161	1092	NC_000913	14401	T
SNP	162	1093	NC_000913	14647	C
SNP	163	1094	NC_000913	14686	T
SNP	164	1095	NC_000913	14698	T
SNP	165	1096	NC_000913	14701	C
SNP	166	1097	NC_000913	14704	G
SNP	167	1098	NC_000913	14956	C
SNP	168	1099	NC_000913	15073	T
SNP	169	1100	NC_000913	15172	G
SNP	170	1101	NC_000913	15174	A
SNP	171	1102	NC_000913	15226	T
SNP	172	1103	NC_000913	15328	T
SNP	173	1104	NC_000913	15338	T
SNP	174	1105	NC_000913	15369	A
SNP	175	1106	NC_000913	16749	A
SNP	176	1107	NC_000913	16966	G
SNP	177	1108	NC_000913	16981	A
SNP	178	1109	NC_000913	17039	T
SNP	179	1110	NC_000913	17085	C
SNP	180	1111	NC_000913	17175	T
SNP	181	1112	NC_000913	17219	T
SNP	182	1113	NC_000913	17229	T
SNP	183	1114	NC_000913	17231	A
SNP	184	1115	NC_000913	17245	G
SNP	185	1116	NC_000913	17281	A
SNP	186	1117	NC_000913	17309	G
SNP	187	1118	NC_000913	17350	T
SNP	188	1119	NC_000913	17383	G
SNP	189	1120	NC_000913	17385	A
SNP	190	1121	NC_000913	17399	G
SNP	191	1122	NC_000913	17436	T
SNP	192	1123	NC_000913	17578	T
SNP	193	1124	NC_000913	17809	T
SNP	194	1125	NC_000913	17830	C
SNP	195	1126	NC_000913	17893	C
SNP	196	1127	NC_000913	17908	G
SNP	197	1128	NC_000913	18093	T
SNP	198	1129	NC_000913	18118	G
SNP	199	1130	NC_000913	18127	A
SNP	200	1131	NC_000913	18169	C
SNP	201	1132	NC_000913	18253	A
SNP	202	1133	NC_000913	18322	T
SNP	203	1134	NC_000913	18477	C
SNP	204	1135	NC_000913	19014	T
SNP	205	1136	NC_000913	19398	G
SNP	206	1137	NC_000913	19613	C
SNP	207	1138	NC_000913	19627	C
INS	208	1139	NC_000913	19634	C	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=C
SNP	209	1140	NC_000913	19670	A
SNP	210	1141	NC_000913	19715	A
SNP	211	1142	NC_000913	20590	C
SNP	212	1143	NC_000913	20600	A
DEL	213	1144	NC_000913	20605	1
INS	214	1996	NC_000913	20703	GCAAGAACCTGCAA
SNP	215	1145	NC_000913	21617	C
SNP	216	1146	NC_000913	21619	G
SNP	217	1147	NC_000913	21750	T
SNP	218	1148	NC_000913	21895	T
SNP	219	1149	NC_000913	21910	T
SNP	220	1150	NC_000913	21922	G
SNP	221	1151	NC_000913	21925	G
SNP	222	1152	NC_000913	21952	A
SNP	223	1153	NC_000913	22048	A
SNP	224	1154	NC_000913	22373	C
SNP	225	1155	NC_000913	22468	G
SNP	226	1156	NC_000913	22942	G
SNP	227	1157	NC_000913	22945	A
SNP	228	1158	NC_000913	23032	T
SNP	229	1159	NC_000913	23038	G
SNP	230	1160	NC_000913	23104	G
SNP	231	1161	NC_000913	23116	T
SNP	232	1162	NC_000913	23137	G
SNP	233	1163	NC_000913	23161	T
SNP	234	1164	NC_000913	23270	A
SNP	235	1165	NC_000913	23297	T
SNP	236	1166	NC_000913	23803	C
SNP	237	1167	NC_000913	23860	C
SUB	238	1168,1169	NC_000913	23896	2	TA
SNP	239	1170	NC_000913	23899	C
SNP	240	1171	NC_000913	23956	C
SNP	241	1172	NC_000913	23962	T
SNP	242	1173	NC_000913	23977	T
SUB	243	1174,1175	NC_000913	23980	2	TC
SNP	244	1176	NC_000913	23983	C
SNP	245	1177	NC_000913	23986	C
SNP	246	1178	NC_000913	24085	G
SNP	247	1179	NC_000913	24091	T
SNP	248	1180	NC_000913	24094	T
SNP	249	1181	NC_000913	24133	A
SNP	250	1182	NC_000913	24136	C
SNP	251	1183	NC_000913	24217	C
SNP	252	1184	NC_000913	24340	C
SNP	253	1185	NC_000913	24616	C
SNP	254	1186	NC_000913	24646	G
SNP	255	1187	NC_000913	24670	T
SNP	256	1188	NC_000913	24781	T
SNP	257	1189	NC_000913	24799	A
SNP	258	1190	NC_000913	24935	G
SNP	259	1191	NC_000913	24977	T
SNP	260	1192	NC_000913	25598	G
SNP	261	1193	NC_000913	25677	A
SNP	262	1194	NC_000913	25685	A
SNP	263	1195	NC_000913	26534	C
SNP	264	1196	NC_000913	26606	C
SNP	265	1197	NC_000913	26609	T
SNP	266	1198	NC_000913	26621	G
SNP	267	1199	NC_000913	26624	G
SNP	268	1200	NC_000913	26636	C
SNP	269	1201	NC_000913	26648	T
SNP	270	1202	NC_000913	26663	T
SNP	271	1203	NC_000913	26666	G
SNP	272	1204	NC_000913	27026	T
SNP	273	1205	NC_000913	27104	A
SNP	274	1206	NC_000913	27367	C
SNP	275	1207	NC_000913	45950	A
SNP	276	1208	NC_000913	45978	T
SNP	277	1209	NC_000913	46028	C
SNP	278	1210	NC_000913	46247	C
SNP	279	1211	NC_000913	46253	C
SNP	280	1212	NC_000913	46277	C
SNP	281	1213	NC_000913	46448	A
SNP	282	1214	NC_000913	46634	T
SNP	283	1215	NC_000913	46652	G
SNP	284	1216	NC_000913	46655	G
SNP	285	1217	NC_000913	46661	C
SNP	286	1218	NC_000913	46790	G
SNP	287	1219	NC_000913	46943	C
SNP	288	1220	NC_000913	46976	G
SNP	289	1221	NC_000913	47099	A
SNP	290	1222	NC_000913	47434	C
SNP	291	1223	NC_000913	48033	G
SNP	292	1224	NC_000913	66635	T
SNP	293	1225	NC_000913	71170	C
SNP	294	1226	NC_000913	81102	A
SNP	295	1227	NC_000913	154182	T
SNP	296	1228	NC_000913	156068	G
DEL	297	1907,1997	NC_000913	257908	776
SUB	298	1240,1241	NC_000913	480295	2	AA
SNP	299	1242	NC_000913	495622	T
SNP	300	1243	NC_000913	500988	T
SNP	301	1244	NC_000913	514434	T
SNP	302	1245	NC_000913	534742	A
SNP	303	1246	NC_000913	582597	T
SNP	304	1247	NC_000913	602835	A
SNP	305	1248	NC_000913	674259	A
SNP	306	1249	NC_000913	677829	C
SNP	307	1250	NC_000913	694941	A
SNP	308	1251	NC_000913	696470	T
SNP	309	1252	NC_000913	708774	A
SNP	310	1253	NC_000913	721604	A
SNP	311	1254	NC_000913	780624	T
SNP	312	1255	NC_000913	789580	A
MOB	313	1999,2001	NC_000913	820914	IS5	1	4
SNP	314	1256	NC_000913	822527	T
SNP	315	1257	NC_000913	883396	T
SNP	316	1258	NC_000913	908169	T
SNP	317	1259	NC_000913	968252	A
SNP	318	1260	NC_000913	1054855	A
SNP	319	1261	NC_000913	1066699	T
SNP	320	1262	NC_000913	1075234	T
SNP	321	1263	NC_000913	1075528	T
SNP	322	1264	NC_000913	1078268	T
SNP	323	1265	NC_000913	1086153	T
SNP	324	1266	NC_000913	1090508	T
MOB	325	2003,2004	NC_000913	1105699	IS1	1	9
SNP	326	1267	NC_000913	1107209	T
SNP	327	1268	NC_000913	1109740	T
SNP	328	1269	NC_000913	1110033	A
SNP	329	1270	NC_000913	1112209	T
SNP	330	1271	NC_000913	1112421	T
SNP	331	1272	NC_000913	1114389	T
SNP	332	1273	NC_000913	1115185	T
SNP	333	1274	NC_000913	1117707	A
SNP	334	1275	NC_000913	1120111	A
SNP	335	1276	NC_000913	1121547	A
SNP	336	1277	NC_000913	1121762	A
SUB	337	1278,1279	NC_000913	1123823	2	AG
SNP	338	1280	NC_000913	1126316	A
SNP	339	1281	NC_000913	1126518	T
SNP	340	1282	NC_000913	1127334	A
SNP	341	1283	NC_000913	1127338	A
SNP	342	1284	NC_000913	1129796	A
SNP	343	1285	NC_000913	1130210	A
SNP	344	1286	NC_000913	1130803	T
SNP	345	1287	NC_000913	1133273	A
SNP	346	1288	NC_000913	1134466	T
SNP	347	1289	NC_000913	1138152	T
SNP	348	1290	NC_000913	1138533	T
SNP	349	1291	NC_000913	1138831	T
SNP	350	1292	NC_000913	1141865	A
SNP	351	1293	NC_000913	1144974	T
SNP	352	1294	NC_000913	1146110	T
SNP	353	1295	NC_000913	1146384	G
SNP	354	1296	NC_000913	1147792	A
SNP	355	1297	NC_000913	1161403	A
SNP	356	1298	NC_000913	1169836	G
SNP	357	1299	NC_000913	1171417	A
SNP	358	1301	NC_000913	1180126	A
SNP	359	1302	NC_000913	1181995	A
SNP	360	1303	NC_000913	1189980	G
SNP	361	1304	NC_000913	1193141	A
SNP	362	1305	NC_000913	1194922	A
SNP	363	1306	NC_000913	1201548	C
SNP	364	1307	NC_000913	1201550	A
SNP	365	1308	NC_000913	1227656	A
SNP	366	1309	NC_000913	1244908	T
SNP	367	1310	NC_000913	1252059	T
SNP	368	1311	NC_000913	1252663	T
SNP	369	1312	NC_000913	1253002	T
SNP	370	1313	NC_000913	1282857	T
DEL	371	1958,2006	NC_000913	1299499	1199
SNP	372	1314	NC_000913	1306736	G
SNP	373	1315	NC_000913	1308684	C
SNP	374	1316	NC_000913	1323798	A
SNP	375	1317	NC_000913	1325054	A
SUB	376	1318,1319	NC_000913	1331059	2	AT
SNP	377	1320	NC_000913	1337394	G
SNP	378	1321	NC_000913	1341542	A
SNP	379	1322	NC_000913	1358859	C
SNP	380	1323	NC_000913	1375737	A
SNP	381	1324	NC_000913	1405758	A
SNP	382	1325	NC_000913	1490095	A
SUB	383	1326,1327,1328,1329	NC_000913	1497385	4	CAA
MOB	384	2007,2008	NC_000913	1586576	IS5	-1	4
SNP	385	1330	NC_000913	1629247	T
SNP	386	1331	NC_000913	1643679	T
SNP	387	1332	NC_000913	1652331	C
MOB	388	2010,2011	NC_000913	1655874	IS2	1	5
SNP	389	1333	NC_000913	1660102	T
SNP	390	1334	NC_000913	1667460	A
SNP	391	1335	NC_000913	1894839	C
DEL	392	1966,2012	NC_000913	1978503	776
SNP	393	1336	NC_000913	2040433	A
DEL	394	1337	NC_000913	2111259	1
SNP	395	1341	NC_000913	2173448	T
SNP	396	1342	NC_000913	2204395	A
MOB	397	2015,2016	NC_000913	2238374	IS1	-1	9
SNP	398	1343	NC_000913	2348366	A
SNP	399	1345	NC_000913	2388753	A
SUB	400	1346,1347	NC_000913	2512423	2	TT
DEL	401	1967,2018	NC_000913	2558699	6790
SNP	402	1348	NC_000913	2577937	C
SNP	403	1349	NC_000913	2582272	T
SNP	404	1350	NC_000913	2587112	T
SNP	405	1351	NC_000913	2600978	T
SNP	406	1352	NC_000913	2613763	A
SNP	407	1353	NC_000913	2623838	A
SNP	408	1354	NC_000913	2632711	A
SNP	409	1355	NC_000913	2684686	C
SNP	410	1356	NC_000913	2722946	A
SNP	411	1357	NC_000913	2774947	A
SNP	412	1358	NC_000913	2778119	T
SNP	413	1359	NC_000913	2806897	A
SNP	414	1360	NC_000913	2814595	T
SNP	415	1361	NC_000913	2849941	A
SNP	416	1362	NC_000913	2851821	A
SNP	417	1363	NC_000913	2867455	A
SNP	418	1364	NC_000913	2880635	C
SNP	419	1365	NC_000913	2881212	T
SNP	420	1366	NC_000913	2883115	A
SNP	421	1367	NC_000913	2890626	A
SNP	422	1368	NC_000913	2893219	T
SNP	423	1369	NC_000913	2893647	T
SNP	424	1370	NC_000913	2894839	T
SNP	425	1371	NC_000913	2916216	A
SNP	426	1372	NC_000913	2926772	A
SNP	427	1373	NC_000913	2934092	A
DEL	428	1374	NC_000913	3025601	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	429	1375	NC_000913	3070858	G
SNP	430	1376	NC_000913	3096754	A
DEL	431	1377	NC_000913	3207549	1
SNP	432	1378	NC_000913	3256301	A
SNP	433	1379	NC_000913	3279276	G
SNP	434	1380	NC_000913	3296481	A
SNP	435	1381	NC_000913	3329743	T
SNP	436	1382	NC_000913	3364664	A
SNP	437	1383	NC_000913	3388041	G
SNP	438	1384	NC_000913	3400207	A
SNP	439	1385	NC_000913	3411689	T
SNP	440	1386	NC_000913	3433665	T
SNP	441	1387	NC_000913	3433900	T
SNP	442	1388	NC_000913	3474425	G
SNP	443	1389	NC_000913	3481131	A
SNP	444	1390	NC_000913	3486502	T
SNP	445	1391	NC_000913	3500129	A
SNP	446	1392	NC_000913	3511466	T
SNP	447	1393	NC_000913	3517171	A
SUB	448	1394,1395	NC_000913	3555047	2	TG
SNP	449	1396	NC_000913	3560362	A
INS	450	1397	NC_000913	3560455	G
SNP	451	1398	NC_000913	3591074	A
SNP	452	1399	NC_000913	3630221	T
SNP	453	1400	NC_000913	3646970	T
SNP	454	1401	NC_000913	3647428	T
SNP	455	1402	NC_000913	3647949	T
SNP	456	1403	NC_000913	3664594	A
SNP	457	1404	NC_000913	3665576	T
SNP	458	1405	NC_000913	3707883	A
SNP	459	1406	NC_000913	3707947	A
SNP	460	1407	NC_000913	3719429	A
SNP	461	1408	NC_000913	3725176	G
SUB	462	1409,1410	NC_000913	3729440	2	TT
SNP	463	1411	NC_000913	3730560	T
SNP	464	1412	NC_000913	3770539	T
DEL	465	1413	NC_000913	3773173	1
SNP	466	1414	NC_000913	3773176	T
SNP	467	1416	NC_000913	3834564	A
SNP	468	1417	NC_000913	3926991	A
SNP	469	1418	NC_000913	3931779	C
SUB	470	1419,1420	NC_000913	3966530	2	TT
SNP	471	1421	NC_000913	3967770	T
MOB	472	2028,2029	NC_000913	4124498	IS2	1	5
SNP	473	1423	NC_000913	4133252	T
SNP	474	1424	NC_000913	4223638	C
SNP	475	1425	NC_000913	4226699	A
SNP	476	1426	NC_000913	4281093	A
SNP	477	1427	NC_000913	4283043	A
SNP	478	1428	NC_000913	4283465	A
SNP	479	1429	NC_000913	4284646	A
SNP	480	1430	NC_000913	4285238	A
SNP	481	1431	NC_000913	4288385	A
INS	482	1433,1434	NC_000913	4296381	GC
SNP	483	1435	NC_000913	4296428	A
SNP	484	1436	NC_000913	4297782	A
SNP	485	1437	NC_000913	4298401	A
SNP	486	1438	NC_000913	4306035	T
SNP	487	1439	NC_000913	4306960	A
SNP	488	1440	NC_000913	4307151	A
SNP	489	1441	NC_000913	4318215	A
SNP	490	1442	NC_000913	4320007	A
SNP	491	1443	NC_000913	4320344	A
SNP	492	1444	NC_000913	4320416	A
SNP	493	1445	NC_000913	4320543	A
SNP	494	1446	NC_000913	4321488	A
SNP	495	1447	NC_000913	4321603	C
SNP	496	1448	NC_000913	4322786	A
SNP	497	1449	NC_000913	4325644	T
SNP	498	1450	NC_000913	4328622	C
SNP	499	1451	NC_000913	4331890	T
SNP	500	1452	NC_000913	4340953	T
SNP	501	1453	NC_000913	4344501	A
SNP	502	1454	NC_000913	4344935	A
MOB	503	2020,2021	NC_000913	4365526	IS2	-1	5
SNP	504	1455	NC_000913	4390331	T
SNP	505	1456	NC_000913	4402938	A
SNP	506	1457	NC_000913	4410859	T
SNP	507	1458	NC_000913	4414192	A
SNP	508	1459	NC_000913	4430584	T
SNP	509	1460	NC_000913	4431220	T
SNP	510	1461	NC_000913	4437890	T
SNP	511	1462	NC_000913	4439578	A
SNP	512	1463	NC_000913	4440768	A
SNP	513	1464	NC_000913	4445315	T
SNP	514	1465	NC_000913	4445924	T
SNP	515	1466	NC_000913	4446482	T
SNP	516	1467	NC_000913	4448304	T
SNP	517	1468	NC_000913	4463952	A
SNP	518	1469	NC_000913	4473900	T
SNP	519	1470	NC_000913	4475493	C
SNP	520	1471	NC_000913	4476605	A
SNP	521	1472	NC_000913	4489016	T
SNP	522	1473	NC_000913	4492470	A
INS	523	1474	NC_000913	4492583	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
SNP	524	1475	NC_000913	4495194	T
SNP	525	1476	NC_000913	4496168	T
SNP	526	1477	NC_000913	4496885	A
SNP	527	1478	NC_000913	4507424	C
SNP	528	1499	NC_000913	4510238	G
SNP	529	1500	NC_000913	4512293	C
SNP	530	1501	NC_000913	4512501	T
SNP	531	1502	NC_000913	4512642	C
SNP	532	1503	NC_000913	4513044	C
SNP	533	1504	NC_000913	4513841	G
SNP	534	1505	NC_000913	4514139	C
SNP	535	1506	NC_000913	4514287	C
SNP	536	1507	NC_000913	4514983	C
SNP	537	1508	NC_000913	4515348	C
SNP	538	1509	NC_000913	4516110	T
SNP	539	1510	NC_000913	4516378	A
SNP	540	1511	NC_000913	4516632	C
SNP	541	1512	NC_000913	4516959	T
SNP	542	1513	NC_000913	4517127	A
SNP	543	1514	NC_000913	4518627	A
SNP	544	1515	NC_000913	4518681	C
SNP	545	1516	NC_000913	4518793	T
SNP	546	1517	NC_000913	4530252	A
SNP	547	1519	NC_000913	4535073	G
SNP	548	1520	NC_000913	4535189	T
SNP	549	1521	NC_000913	4540111	G
SNP	550	1522	NC_000913	4540114	T
SNP	551	1523	NC_000913	4540431	C
MOB	552	2025,2027	NC_000913	4541425	IS1	-1	8
DEL	553	1524	NC_000913	4542683	1
INS	554	1525	NC_000913	4542692	A
SNP	555	1526	NC_000913	4543047	G
SNP	556	1527	NC_000913	4544464	T
SNP	557	1528	NC_000913	4546272	C
SNP	558	1529	NC_000913	4549223	G
SNP	559	1530	NC_000913	4553609	A
SNP	560	1531	NC_000913	4556917	G
SNP	561	1532	NC_000913	4560309	A
SNP	562	1533	NC_000913	4563567	C
SNP	563	1534	NC_000913	4564141	G
SNP	564	1535	NC_000913	4567272	A
SNP	565	1536	NC_000913	4569307	C
SNP	566	1538	NC_000913	4592082	A
SNP	567	1539	NC_000913	4592188	T
DEL	568	1540	NC_000913	4595570	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=A
SNP	569	1541	NC_000913	4602089	T
SNP	570	1542	NC_000913	4605702	C
SNP	571	1543	NC_000913	4605791	G
SNP	572	1544	NC_000913	4614170	T
SNP	573	1545	NC_000913	4616022	C
SNP	574	1546	NC_000913	4616073	C
SNP	575	1547	NC_000913	4616514	G
SNP	576	1548	NC_000913	4616535	G
SNP	577	1549	NC_000913	4616648	T
SNP	578	1550	NC_000913	4616682	T
SNP	579	1551	NC_000913	4617053	C
SNP	580	1552	NC_000913	4617138	A
SNP	581	1553	NC_000913	4617238	A
SNP	582	1554	NC_000913	4617409	A
SNP	583	1555	NC_000913	4617412	T
SNP	584	1556	NC_000913	4617415	T
SNP	585	1557	NC_000913	4617436	C
SNP	586	1558	NC_000913	4617499	A
SNP	587	1559	NC_000913	4617532	T
SNP	588	1560	NC_000913	4617565	T
SNP	589	1561	NC_000913	4617574	A
SNP	590	1562	NC_000913	4617616	C
SNP	591	1563	NC_000913	4617631	G
SNP	592	1564	NC_000913	4617928	A
SNP	593	1565	NC_000913	4617976	C
SNP	594	1566	NC_000913	4618030	T
SNP	595	1567	NC_000913	4618055	T
SNP	596	1568	NC_000913	4618069	C
SNP	597	1569	NC_000913	4618075	T
SNP	598	1570	NC_000913	4618276	A
SNP	599	1571	NC_000913	4618312	C
SNP	600	1572	NC_000913	4618483	T
SNP	601	1573	NC_000913	4618489	T
SNP	602	1574	NC_000913	4618702	C
SNP	603	1575	NC_000913	4618717	G
SNP	604	1576	NC_000913	4618804	G
SNP	605	1577	NC_000913	4619026	G
SNP	606	1578	NC_000913	4619080	T
SNP	607	1579	NC_000913	4619131	A
SNP	608	1580	NC_000913	4619134	A
SNP	609	1581	NC_000913	4619197	A
SNP	610	1582	NC_000913	4619335	T
SNP	611	1583	NC_000913	4619338	T
SNP	612	1584	NC_000913	4619359	T
SNP	613	1585	NC_000913	4619393	T
SNP	614	1586	NC_000913	4619454	G
SNP	615	1587	NC_000913	4619917	C
SNP	616	1588	NC_000913	4620067	G
SNP	617	1589	NC_000913	4620145	C
SNP	618	1590	NC_000913	4620150	G
SNP	619	1591	NC_000913	4620154	C
SNP	620	1592	NC_000913	4620157	T
SNP	621	1593	NC_000913	4620160	C
SNP	622	1594	NC_000913	4620223	C
SNP	623	1595	NC_000913	4620256	T
SNP	624	1596	NC_000913	4620358	T
SNP	625	1597	NC_000913	4620385	A
SNP	626	1598	NC_000913	4620415	G
SNP	627	1599	NC_000913	4620427	A
SNP	628	1600	NC_000913	4620559	T
SNP	629	1601	NC_000913	4620571	G
SNP	630	1602	NC_000913	4620637	T
SNP	631	1603	NC_000913	4620652	T
SNP	632	1604	NC_000913	4620706	T
SNP	633	1605	NC_000913	4620709	C
SNP	634	1606	NC_000913	4620742	C
SNP	635	1607	NC_000913	4620763	T
SNP	636	1608	NC_000913	4620766	T
SUB	637	2031	NC_000913	4620828	43	AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT
SNP	638	1609	NC_000913	4621236	T
SNP	639	1610	NC_000913	4621278	T
SNP	640	1611	NC_000913	4621296	G
SNP	641	1612	NC_000913	4621302	C
SNP	642	1613	NC_000913	4621305	G
SNP	643	1614	NC_000913	4621321	G
SNP	644	1615	NC_000913	4621410	C
SNP	645	1616	NC_000913	4621458	G
SNP	646	1617	NC_000913	4621491	G
SNP	647	1618	NC_000913	4621542	C
SNP	648	1619	NC_000913	4621616	A
SUB	649	1620,1621	NC_000913	4621624	2	AC
SNP	650	1622	NC_000913	4621627	T
SNP	651	1623	NC_000913	4621629	G
SNP	652	1624	NC_000913	4621633	T
SNP	653	1625	NC_000913	4621644	A
SNP	654	1626	NC_000913	4623336	C
SNP	655	1627	NC_000913	4623404	A
SNP	656	1628	NC_000913	4623448	C
SNP	657	1629	NC_000913	4623470	T
SNP	658	1630	NC_000913	4623473	A
SNP	659	1631	NC_000913	4623502	T
SNP	660	1632	NC_000913	4623544	G
SNP	661	1633	NC_000913	4623575	C
SNP	662	1634	NC_000913	4623578	T
SNP	663	1635	NC_000913	4623581	G
SNP	664	1636	NC_000913	4623641	A
SNP	665	1637	NC_000913	4623656	C
SNP	666	1638	NC_000913	4623680	A
SNP	667	1639	NC_000913	4623707	T
SNP	668	1640	NC_000913	4623732	G
SNP	669	1641	NC_000913	4623758	C
SNP	670	1642	NC_000913	4623782	A
SNP	671	1643	NC_000913	4623821	G
SNP	672	1644	NC_000913	4623911	T
SNP	673	1645	NC_000913	4623983	C
SNP	674	1646	NC_000913	4624037	C
SNP	675	1647	NC_000913	4624055	C
SNP	676	1648	NC_000913	4624226	A
SNP	677	1649	NC_000913	4624262	G
SNP	678	1650	NC_000913	4624277	A
SNP	679	1651	NC_000913	4624355	C
SNP	680	1652	NC_000913	4624388	C
SNP	681	1653	NC_000913	4624391	G
SNP	682	1654	NC_000913	4624400	T
SNP	683	1655	NC_000913	4624430	C
SNP	684	1656	NC_000913	4624487	G
SNP	685	1657	NC_000913	4624517	G
SNP	686	1658	NC_000913	4624586	C
SNP	687	1659	NC_000913	4624622	T
SNP	688	1660	NC_000913	4624670	T
SNP	689	1661	NC_000913	4625044	G
SNP	690	1662	NC_000913	4625158	G
SNP	691	1663	NC_000913	4625170	T
SNP	692	1664	NC_000913	4625179	A
SNP	693	1665	NC_000913	4625242	C
SNP	694	1666	NC_000913	4625248	T
SNP	695	1667	NC_000913	4625377	C
SNP	696	1668	NC_000913	4625533	T
SNP	697	1669	NC_000913	4625546	T
SNP	698	1670	NC_000913	4626042	C
SNP	699	1671	NC_000913	4626245	T
SNP	700	1672	NC_000913	4626247	G
SNP	701	1673	NC_000913	4626391	G
SNP	702	1674	NC_000913	4626487	C
SNP	703	1675	NC_000913	4626521	C
SNP	704	1676	NC_000913	4626526	G
SNP	705	1677	NC_000913	4626565	T
SNP	706	1678	NC_000913	4626568	A
SNP	707	1679	NC_000913	4626586	C
SNP	708	1680	NC_000913	4626595	G
SNP	709	1681	NC_000913	4626601	T
SNP	710	1682	NC_000913	4626670	T
SNP	711	1683	NC_000913	4626673	A
SNP	712	1684	NC_000913	4626784	A
SNP	713	1685	NC_000913	4626802	C
SNP	714	1686	NC_000913	4626808	C
SNP	715	1687	NC_000913	4626820	G
SUB	716	1688,1689	NC_000913	4626838	2	GT
SNP	717	1690	NC_000913	4626886	T
SNP	718	1691	NC_000913	4626889	G
SNP	719	1692	NC_000913	4626943	C
SNP	720	1693	NC_000913	4627027	C
SNP	721	1694	NC_000913	4627069	T
SNP	722	1695	NC_000913	4627084	A
SNP	723	1696	NC_000913	4627159	T
SNP	724	1697	NC_000913	4627162	A
SNP	725	1698	NC_000913	4627213	A
SUB	726	1699,1700	NC_000913	4627299	2	GA
SNP	727	1701	NC_000913	4627377	G
SNP	728	1702	NC_000913	4627509	C
SNP	729	1703	NC_000913	4627512	T
SNP	730	1704	NC_000913	4627518	G
SNP	731	1705	NC_000913	4627539	G
SNP	732	1706	NC_000913	4627593	A
SNP	733	1707	NC_000913	4627626	C
SNP	734	1708	NC_000913	4627629	T
SNP	735	1709	NC_000913	4627641	T
SNP	736	1710	NC_000913	4627650	C
SNP	737	1711	NC_000913	4627653	T
SNP	738	1712	NC_000913	4627668	C
SNP	739	1713	NC_000913	4627689	C
SNP	740	1714	NC_000913	4627698	A
SNP	741	1715	NC_000913	4627818	G
SNP	742	1716	NC_000913	4627824	T
SNP	743	1717	NC_000913	4627833	C
SNP	744	1718	NC_000913	4627893	T
SNP	745	1719	NC_000913	4627986	G
SNP	746	1720	NC_000913	4628001	C
SNP	747	1721	NC_000913	4628007	A
SNP	748	1722	NC_000913	4628028	T
SNP	749	1723	NC_000913	4628082	T
SNP	750	1724	NC_000913	4628106	T
SNP	751	1725	NC_000913	4628160	C
SNP	752	1726	NC_000913	4628163	T
SNP	753	1727	NC_000913	4628311	T
SNP	754	1728	NC_000913	4628442	G
SNP	755	1729	NC_000913	4628463	C
SNP	756	1730	NC_000913	4628481	C
SNP	757	1731	NC_000913	4628487	T
SNP	758	1732	NC_000913	4628493	C
SNP	759	1733	NC_000913	4628514	G
SNP	760	1734	NC_000913	4628551	C
SNP	761	1735	NC_000913	4628560	G
SNP	762	1736	NC_000913	4628583	A
DEL	763	1737	NC_000913	4628592	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
SNP	764	1738	NC_000913	4628668	T
SNP	765	1739	NC_000913	4628678	C
SNP	766	1740	NC_000913	4628683	A
SNP	767	1741	NC_000913	4628699	G
SNP	768	1742	NC_000913	4628707	A
SNP	769	1743	NC_000913	4628710	C
SNP	770	1744	NC_000913	4628721	T
SUB	771	1745,1746	NC_000913	4628778	2	GG
SNP	772	1747	NC_000913	4628782	A
SNP	773	1748	NC_000913	4628785	C
SNP	774	1749	NC_000913	4628802	T
SNP	775	1750	NC_000913	4628805	T
SNP	776	1751	NC_000913	4628807	G
SNP	777	1752	NC_000913	4628831	A
SNP	778	1753	NC_000913	4628897	T
SNP	779	1754	NC_000913	4628939	A
SNP	780	1755	NC_000913	4628984	G
SNP	781	1756	NC_000913	4628990	G
SNP	782	1757	NC_000913	4629188	A
SNP	783	1758	NC_000913	4629281	A
SNP	784	1759	NC_000913	4629356	T
SNP	785	1760	NC_000913	4629377	T
SNP	786	1761	NC_000913	4629446	G
SNP	787	1762	NC_000913	4629473	T
SNP	788	1763	NC_000913	4629476	C
SNP	789	1764	NC_000913	4629515	G
SNP	790	1765	NC_000913	4629521	A
SNP	791	1766	NC_000913	4629524	G
SNP	792	1767	NC_000913	4629635	C
SNP	793	1768	NC_000913	4629647	T
SNP	794	1769	NC_000913	4629674	G
SNP	795	1770	NC_000913	4629686	T
SNP	796	1771	NC_000913	4629689	C
SNP	797	1772	NC_000913	4629701	C
SNP	798	1773	NC_000913	4629716	G
SNP	799	1774	NC_000913	4629797	G
SNP	800	1775	NC_000913	4629887	C
SNP	801	1776	NC_000913	4629896	C
SNP	802	1777	NC_000913	4630022	C
SNP	803	1778	NC_000913	4630106	G
SNP	804	1779	NC_000913	4630238	A
SNP	805	1780	NC_000913	4630304	G
SNP	806	1781	NC_000913	4630385	A
SNP	807	1782	NC_000913	4630400	G
SNP	808	1783	NC_000913	4630553	G
SUB	809	1784,1785	NC_000913	4630602	2	TT
SNP	810	1786	NC_000913	4630615	T
SNP	811	1787	NC_000913	4630837	C
SNP	812	1788	NC_000913	4630912	A
SNP	813	1789	NC_000913	4630921	A
SNP	814	1790	NC_000913	4630945	T
SNP	815	1791	NC_000913	4630960	C
SNP	816	1792	NC_000913	4630984	T
SNP	817	1793	NC_000913	4631146	A
SNP	818	1794	NC_000913	4631245	T
SNP	819	1795	NC_000913	4631323	T
SNP	820	1796	NC_000913	4634882	T
SNP	821	1797	NC_000913	4635658	C
SNP	822	1798	NC_000913	4635706	A
SNP	823	1799	NC_000913	4635757	T
SNP	824	1800	NC_000913	4635889	C
SNP	825	1801	NC_000913	4636139	C
SUB	826	1802,1803	NC_000913	4636146	2	CT
SNP	827	1804	NC_000913	4636175	T
SNP	828	1805	NC_000913	4636180	T
SNP	829	1806	NC_000913	4636186	C
SNP	830	1807	NC_000913	4636201	A
SNP	831	1808	NC_000913	4636309	T
SNP	832	1809	NC_000913	4636385	T
SNP	833	1810	NC_000913	4636411	T
SNP	834	1811	NC_000913	4636466	A
SNP	835	1812	NC_000913	4636474	G
SNP	836	1813	NC_000913	4636493	C
SNP	837	1814	NC_000913	4636513	G
SNP	838	1815	NC_000913	4636516	A
SNP	839	1816	NC_000913	4636543	A
SNP	840	1817	NC_000913	4636555	G
SNP	841	1818	NC_000913	4636591	T
SNP	842	1819	NC_000913	4636610	T
SNP	843	1820	NC_000913	4636717	C
SNP	844	1821	NC_000913	4636749	G
SNP	845	1822	NC_000913	4636767	T
SNP	846	1823	NC_000913	4636821	A
SNP	847	1824	NC_000913	4636827	T
SNP	848	1825	NC_000913	4636993	T
SNP	849	1826	NC_000913	4637001	T
SNP	850	1827	NC_000913	4637037	G
SNP	851	1828	NC_000913	4637133	G
SNP	852	1829	NC_000913	4637151	G
SNP	853	1830	NC_000913	4637269	C
SNP	854	1831	NC_000913	4637322	C
SNP	855	1832	NC_000913	4637346	C
SNP	856	1833	NC_000913	4637379	T
SNP	857	1834	NC_000913	4637382	T
SNP	858	1835	NC_000913	4637385	A
SNP	859	1836	NC_000913	4637391	C
SNP	860	1837	NC_000913	4637409	G
SNP	861	1838	NC_000913	4637412	T
SNP	862	1839	NC_000913	4637478	T
SNP	863	1840	NC_000913	4637481	G
SNP	864	1841	NC_000913	4637487	C
SNP	865	1842	NC_000913	4637523	C
SNP	866	1843	NC_000913	4637553	A
SNP	867	1844	NC_000913	4637577	C
SNP	868	1845	NC_000913	4637675	T
SNP	869	1846	NC_000913	4637697	T
SNP	870	1847	NC_000913	4637742	C
SNP	871	1848	NC_000913	4637751	A
SNP	872	1849	NC_000913	4637759	T
SNP	873	1850	NC_000913	4637766	T
SNP	874	1851	NC_000913	4637775	T
SNP	875	1852	NC_000913	4637814	G
SNP	876	1853	NC_000913	4637857	C
SNP	877	1854	NC_000913	4637862	A
SNP	878	1855	NC_000913	4637896	G
SNP	879	1856	NC_000913	4637898	C
SNP	880	1857	NC_000913	4637943	G
SNP	881	1858	NC_000913	4637976	G
SNP	882	1859	NC_000913	4638142	C
SNP	883	1860	NC_000913	4638210	C
SNP	884	1861	NC_000913	4638212	C
SNP	885	1862	NC_000913	4638214	T
SNP	886	1863	NC_000913	4638264	A
SNP	887	1864	NC_000913	4638282	C
SNP	888	1865	NC_000913	4638354	T
SNP	889	1866	NC_000913	4638532	C
SNP	890	1867	NC_000913	4638567	G
SNP	891	1868	NC_000913	4638587	T
SNP	892	1869	NC_000913	4638600	C
SNP	893	1870	NC_000913	4638735	C
SNP	894	1871	NC_000913	4638818	C
SNP	895	1872	NC_000913	4638883	T
SNP	896	1873	NC_000913	4638885	G
SNP	897	1874	NC_000913	4638927	A
SNP	898	1875	NC_000913	4639005	C
SNP	899	1876	NC_000913	4639023	G
SNP	900	1877	NC_000913	4639053	G
SNP	901	1878	NC_000913	4639217	T
SNP	902	1879	NC_000913	4639261	T
SNP	903	1880	NC_000913	4639284	G
SNP	904	1881	NC_000913	4639299	C
SNP	905	1882	NC_000913	4639303	C
SNP	906	1883	NC_000913	4639440	T
SNP	907	1884	NC_000913	4639502	T
SNP	908	1885	NC_000913	4639510	C
SNP	909	1886	NC_000913	4639512	A
SNP	910	1887	NC_000913	4639608	A
SNP	911	1888	NC_000913	4639632	G
SNP	912	1889	NC_000913	4639719	T
SNP	913	1890	NC_000913	4639764	A
SNP	914	1891	NC_000913	4639956	C
SNP	915	1892	NC_000913	4640785	T
SNP	916	1893	NC_000913	4640864	G
SNP	917	1894	NC_000913	4641131	C
SNP	918	1895	NC_000913	4641208	T
SNP	919	1896	NC_000913	4641217	A
SNP	920	1897	NC_000913	4641226	A
SNP	921	1898	NC_000913	4641296	C
SNP	922	1899	NC_000913	4641352	A
SNP	923	1900	NC_000913	4641382	A
SNP	924	1901	NC_000913	4641428	A
SUB	925	1902,1903	NC_000913	4641439	2	CA
SNP	926	1904	NC_000913	4641483	T
SNP	927	1905	NC_000913	4641488	G
SNP	928	1906	NC_000913	4641544	G
RA	929	.	NC_000913	310	0	T	.	bias_e_value=4573630	bias_p_value=0.985344	consensus_score=52.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.833753	major_base=.	major_cov=10/8	major_frequency=8.182e-01	minor_base=T	minor_cov=2/2	new_cov=10/8	polymorphism_frequency=8.182e-01	polymorphism_score=11.1	prediction=consensus	ref_cov=2/2	total_cov=12/10
RA	930	.	NC_000913	393	0	T	G	bias_e_value=2981170	bias_p_value=0.642265	consensus_score=50.9	fisher_strand_p_value=0.5	frequency=1	ks_quality_p_value=0.569226	major_base=G	major_cov=13/10	major_frequency=9.200e-01	minor_base=T	minor_cov=2/0	new_cov=13/10	polymorphism_frequency=9.200e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=2/0	total_cov=15/10
RA	931	.	NC_000913	588	0	G	A	bias_e_value=3215690	bias_p_value=0.692789	consensus_score=44.2	fisher_strand_p_value=0.596273	frequency=1	ks_quality_p_value=0.548812	major_base=A	major_cov=10/10	major_frequency=8.333e-01	minor_base=G	minor_cov=1/3	new_cov=10/10	polymorphism_frequency=8.333e-01	polymorphism_score=2.2	prediction=consensus	ref_cov=1/3	total_cov=11/13
RA	932	.	NC_000913	774	0	T	C	bias_e_value=638409	bias_p_value=0.137539	consensus_score=56.5	fisher_strand_p_value=0.0913043	frequency=1	ks_quality_p_value=0.335911	major_base=C	major_cov=19/3	major_frequency=8.800e-01	minor_base=T	minor_cov=1/2	new_cov=19/3	polymorphism_frequency=8.800e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=1/2	total_cov=20/5
RA	933	.	NC_000913	867	0	C	T	bias_e_value=2742920	bias_p_value=0.590936	consensus_score=54.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.245957	major_base=T	major_cov=20/1	major_frequency=9.545e-01	minor_base=C	minor_cov=1/0	new_cov=20/1	polymorphism_frequency=9.545e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=22/1
RA	934	.	NC_000913	939	0	G	A	bias_e_value=4614950	bias_p_value=0.994247	consensus_score=59.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.894666	major_base=A	major_cov=16/7	major_frequency=9.200e-01	minor_base=G	minor_cov=2/0	new_cov=16/7	polymorphism_frequency=9.200e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=2/0	total_cov=19/7
RA	935	.	NC_000913	966	0	T	C	bias_e_value=4626400	bias_p_value=0.996715	consensus_score=66.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.920044	major_base=C	major_cov=16/8	major_frequency=9.600e-01	minor_base=T	minor_cov=1/0	new_cov=16/8	polymorphism_frequency=9.600e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=1/0	total_cov=17/8
RA	936	.	NC_000913	969	0	T	G	bias_e_value=4500040	bias_p_value=0.969492	consensus_score=65.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.763379	major_base=G	major_cov=16/8	major_frequency=9.600e-01	minor_base=T	minor_cov=1/0	new_cov=16/8	polymorphism_frequency=9.600e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=17/8
RA	937	.	NC_000913	1206	0	A	T	bias_e_value=4284600	bias_p_value=0.923076	consensus_score=81.2	fisher_strand_p_value=0.634348	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/12	major_frequency=8.529e-01	minor_base=A	minor_cov=2/3	new_cov=17/12	polymorphism_frequency=8.529e-01	polymorphism_score=2.7	prediction=consensus	ref_cov=2/3	total_cov=19/15
RA	938	.	NC_000913	1278	0	C	T	bias_e_value=4625230	bias_p_value=0.996461	consensus_score=92.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.917062	major_base=T	major_cov=18/15	major_frequency=9.429e-01	minor_base=C	minor_cov=1/1	new_cov=18/15	polymorphism_frequency=9.429e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/1	total_cov=19/17
RA	939	.	NC_000913	1299	0	T	C	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=97.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996737	major_base=C	major_cov=17/17	major_frequency=9.444e-01	minor_base=T	minor_cov=1/1	new_cov=17/17	polymorphism_frequency=9.444e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/1	total_cov=18/18
RA	940	.	NC_000913	1302	0	T	C	bias_e_value=4553230	bias_p_value=0.980951	consensus_score=88.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.811273	major_base=C	major_cov=17/17	major_frequency=9.444e-01	minor_base=T	minor_cov=1/1	new_cov=17/17	polymorphism_frequency=9.444e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/1	total_cov=18/18
RA	941	.	NC_000913	1323	0	C	T	bias_e_value=4631780	bias_p_value=0.997874	consensus_score=82.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.935507	major_base=T	major_cov=15/15	major_frequency=9.375e-01	minor_base=C	minor_cov=1/1	new_cov=15/15	polymorphism_frequency=9.375e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=1/1	total_cov=16/16
RA	942	.	NC_000913	1341	0	C	G	bias_e_value=4641430	bias_p_value=0.999952	consensus_score=79.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990196	major_base=G	major_cov=15/13	major_frequency=9.655e-01	minor_base=C	minor_cov=1/0	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=1/0	total_cov=16/13
RA	943	.	NC_000913	1407	0	C	T	bias_e_value=4572150	bias_p_value=0.985026	consensus_score=69.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.832012	major_base=T	major_cov=17/10	major_frequency=9.310e-01	minor_base=C	minor_cov=1/1	new_cov=17/10	polymorphism_frequency=9.310e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=19/11
RA	944	.	NC_000913	1425	0	A	G	bias_e_value=3522430	bias_p_value=0.758874	consensus_score=70.2	fisher_strand_p_value=0.423077	frequency=1	ks_quality_p_value=0.925961	major_base=G	major_cov=15/10	major_frequency=9.615e-01	minor_base=A	minor_cov=0/1	new_cov=15/10	polymorphism_frequency=9.615e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=17/11
RA	945	.	NC_000913	1509	0	A	G	bias_e_value=2087120	bias_p_value=0.44965	consensus_score=62.6	fisher_strand_p_value=0.434783	frequency=1	ks_quality_p_value=0.363543	major_base=G	major_cov=13/9	major_frequency=9.565e-01	minor_base=A	minor_cov=0/1	new_cov=13/9	polymorphism_frequency=9.565e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=13/10
RA	946	.	NC_000913	1593	0	A	G	bias_e_value=3012150	bias_p_value=0.64894	consensus_score=67.6	fisher_strand_p_value=0.496774	frequency=1	ks_quality_p_value=0.583695	major_base=G	major_cov=13/16	major_frequency=9.355e-01	minor_base=A	minor_cov=0/2	new_cov=13/16	polymorphism_frequency=9.355e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/2	total_cov=13/18
RA	947	.	NC_000913	1797	0	G	A	bias_e_value=2590620	bias_p_value=0.558124	consensus_score=91.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.223329	major_base=A	major_cov=13/20	major_frequency=9.706e-01	minor_base=G	minor_cov=0/1	new_cov=13/20	polymorphism_frequency=9.706e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=13/21
RA	948	.	NC_000913	1860	0	T	A	bias_e_value=4411370	bias_p_value=0.950388	consensus_score=102.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.702015	major_base=A	major_cov=15/21	major_frequency=9.474e-01	minor_base=T	minor_cov=1/1	new_cov=15/21	polymorphism_frequency=9.474e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=1/1	total_cov=17/22
RA	949	.	NC_000913	1875	0	A	G	bias_e_value=1989120	bias_p_value=0.428537	consensus_score=114.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.146839	major_base=G	major_cov=14/24	major_frequency=9.500e-01	minor_base=A	minor_cov=1/1	new_cov=14/24	polymorphism_frequency=9.500e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/1	total_cov=15/25
RA	950	.	NC_000913	1884	0	T	A	bias_e_value=4493090	bias_p_value=0.967994	consensus_score=110.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.757903	major_base=A	major_cov=13/24	major_frequency=9.487e-01	minor_base=T	minor_cov=1/1	new_cov=13/24	polymorphism_frequency=9.487e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/1	total_cov=14/25
RA	951	.	NC_000913	2038	0	C	T	bias_e_value=3497440	bias_p_value=0.753491	consensus_score=85.4	fisher_strand_p_value=0.603861	frequency=1	ks_quality_p_value=0.639308	major_base=T	major_cov=16/18	major_frequency=8.947e-01	minor_base=C	minor_cov=3/1	new_cov=16/18	polymorphism_frequency=8.947e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=3/1	total_cov=19/19
RA	952	.	NC_000913	2108	0	A	T	bias_e_value=4635420	bias_p_value=0.998657	consensus_score=104.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.94862	major_base=T	major_cov=19/16	major_frequency=8.974e-01	minor_base=A	minor_cov=2/2	new_cov=19/16	polymorphism_frequency=8.974e-01	polymorphism_score=0.9	prediction=consensus	ref_cov=2/2	total_cov=21/18
RA	953	.	NC_000913	2116	0	T	C	bias_e_value=4637000	bias_p_value=0.998998	consensus_score=87.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.955563	major_base=C	major_cov=19/14	major_frequency=9.167e-01	minor_base=T	minor_cov=2/1	new_cov=19/14	polymorphism_frequency=9.167e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=2/1	total_cov=21/15
RA	954	.	NC_000913	2211	0	A	T	bias_e_value=4237400	bias_p_value=0.912908	consensus_score=82.2	fisher_strand_p_value=0.61282	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/13	major_frequency=8.750e-01	minor_base=A	minor_cov=3/1	new_cov=15/13	polymorphism_frequency=8.750e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=3/1	total_cov=18/14
RA	955	.	NC_000913	2247	0	T	A	bias_e_value=4638550	bias_p_value=0.999331	consensus_score=69.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.96364	major_base=A	major_cov=14/10	major_frequency=8.889e-01	minor_base=T	minor_cov=2/1	new_cov=14/10	polymorphism_frequency=8.889e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=2/1	total_cov=17/11
RA	956	.	NC_000913	2307	0	C	T	bias_e_value=4624160	bias_p_value=0.996231	consensus_score=50.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.914442	major_base=T	major_cov=11/12	major_frequency=8.214e-01	minor_base=C	minor_cov=2/3	new_cov=11/12	polymorphism_frequency=8.214e-01	polymorphism_score=4.2	prediction=consensus	ref_cov=2/3	total_cov=13/15
RA	957	.	NC_000913	2310	0	G	T	bias_e_value=4633060	bias_p_value=0.998149	consensus_score=51.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.939778	major_base=T	major_cov=11/12	major_frequency=8.214e-01	minor_base=G	minor_cov=2/3	new_cov=11/12	polymorphism_frequency=8.214e-01	polymorphism_score=5.3	prediction=consensus	ref_cov=2/3	total_cov=13/15
RA	958	.	NC_000913	2343	0	C	T	bias_e_value=4637430	bias_p_value=0.99909	consensus_score=71.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.957634	major_base=T	major_cov=11/17	major_frequency=8.485e-01	minor_base=C	minor_cov=2/3	new_cov=11/17	polymorphism_frequency=8.485e-01	polymorphism_score=4.4	prediction=consensus	ref_cov=2/3	total_cov=13/20
RA	959	.	NC_000913	2373	0	G	A	bias_e_value=4164920	bias_p_value=0.897292	consensus_score=63.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.582488	major_base=A	major_cov=12/14	major_frequency=8.387e-01	minor_base=G	minor_cov=2/3	new_cov=12/14	polymorphism_frequency=8.387e-01	polymorphism_score=5.0	prediction=consensus	ref_cov=2/3	total_cov=14/17
RA	960	.	NC_000913	2382	0	A	G	bias_e_value=4330020	bias_p_value=0.932863	consensus_score=61.1	fisher_strand_p_value=0.656705	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=12/12	major_frequency=8.000e-01	minor_base=A	minor_cov=2/4	new_cov=12/12	polymorphism_frequency=8.000e-01	polymorphism_score=4.9	prediction=consensus	ref_cov=2/4	total_cov=14/16
RA	961	.	NC_000913	2469	0	C	T	bias_e_value=2878840	bias_p_value=0.620219	consensus_score=84.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.267488	major_base=T	major_cov=14/21	major_frequency=8.974e-01	minor_base=C	minor_cov=1/3	new_cov=14/21	polymorphism_frequency=8.974e-01	polymorphism_score=3.2	prediction=consensus	ref_cov=1/3	total_cov=15/24
RA	962	.	NC_000913	2508	0	A	G	bias_e_value=720413	bias_p_value=0.155206	consensus_score=87.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.0358598	major_base=G	major_cov=13/20	major_frequency=9.429e-01	minor_base=A	minor_cov=1/1	new_cov=13/20	polymorphism_frequency=9.429e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=14/22
RA	963	.	NC_000913	2595	0	C	T	bias_e_value=3603990	bias_p_value=0.776445	consensus_score=77.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.411	major_base=T	major_cov=15/13	major_frequency=9.655e-01	minor_base=C	minor_cov=1/0	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=17/14
RA	964	.	NC_000913	2597	0	T	C	bias_e_value=3603990	bias_p_value=0.776445	consensus_score=81.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.411	major_base=C	major_cov=15/13	major_frequency=9.655e-01	minor_base=T	minor_cov=1/0	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=17/14
RA	965	.	NC_000913	2676	0	C	T	bias_e_value=4519350	bias_p_value=0.973651	consensus_score=71.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.7794	major_base=T	major_cov=17/8	major_frequency=9.615e-01	minor_base=C	minor_cov=1/0	new_cov=17/8	polymorphism_frequency=9.615e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=18/8
RA	966	.	NC_000913	2709	0	A	G	bias_e_value=4343090	bias_p_value=0.935677	consensus_score=72.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.66348	major_base=G	major_cov=16/10	major_frequency=9.630e-01	minor_base=A	minor_cov=1/0	new_cov=16/10	polymorphism_frequency=9.630e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=17/10
RA	967	.	NC_000913	2760	0	T	C	bias_e_value=3615870	bias_p_value=0.779005	consensus_score=70.3	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.931252	major_base=C	major_cov=15/11	major_frequency=9.630e-01	minor_base=T	minor_cov=0/1	new_cov=15/11	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=15/12
RA	968	.	NC_000913	3025	0	A	G	bias_e_value=2227590	bias_p_value=0.479914	consensus_score=81.5	fisher_strand_p_value=0.451613	frequency=1	ks_quality_p_value=0.387365	major_base=G	major_cov=13/17	major_frequency=9.677e-01	minor_base=A	minor_cov=1/0	new_cov=13/17	polymorphism_frequency=9.677e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=14/17
RA	969	.	NC_000913	3028	0	G	T	bias_e_value=2479850	bias_p_value=0.53426	consensus_score=82.4	fisher_strand_p_value=0.451613	frequency=1	ks_quality_p_value=0.460085	major_base=T	major_cov=13/17	major_frequency=9.677e-01	minor_base=G	minor_cov=1/0	new_cov=13/17	polymorphism_frequency=9.677e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=14/17
RA	970	.	NC_000913	3031	0	T	C	bias_e_value=1194420	bias_p_value=0.257326	consensus_score=84.5	fisher_strand_p_value=0.0704433	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=10/17	major_frequency=9.000e-01	minor_base=A	minor_cov=3/0	new_cov=10/17	polymorphism_frequency=9.000e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=14/17
RA	971	.	NC_000913	3055	0	C	T	bias_e_value=2578420	bias_p_value=0.555496	consensus_score=83.6	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=0.474816	major_base=T	major_cov=13/16	major_frequency=9.667e-01	minor_base=C	minor_cov=1/0	new_cov=13/16	polymorphism_frequency=9.667e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=14/16
RA	972	.	NC_000913	3073	0	G	A	bias_e_value=3067320	bias_p_value=0.660824	consensus_score=95.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.299695	major_base=A	major_cov=17/16	major_frequency=9.706e-01	minor_base=G	minor_cov=1/0	new_cov=17/16	polymorphism_frequency=9.706e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=18/16
RA	973	.	NC_000913	3097	0	T	C	bias_e_value=3632480	bias_p_value=0.782583	consensus_score=84.1	fisher_strand_p_value=0.451613	frequency=1	ks_quality_p_value=0.925502	major_base=C	major_cov=13/17	major_frequency=9.677e-01	minor_base=T	minor_cov=1/0	new_cov=13/17	polymorphism_frequency=9.677e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=15/17
RA	974	.	NC_000913	3142	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=79.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/17	major_frequency=9.333e-01	minor_base=G	minor_cov=1/1	new_cov=11/17	polymorphism_frequency=9.333e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=1/0	total_cov=13/18
RA	975	.	NC_000913	3196	0	C	A	bias_e_value=4641480	bias_p_value=0.999963	consensus_score=66.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991465	major_base=A	major_cov=13/12	major_frequency=8.929e-01	minor_base=C	minor_cov=2/1	new_cov=13/12	polymorphism_frequency=8.929e-01	polymorphism_score=-0.5	prediction=consensus	ref_cov=2/1	total_cov=15/13
RA	976	.	NC_000913	3199	0	T	A	bias_e_value=4330690	bias_p_value=0.933006	consensus_score=67.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.657047	major_base=A	major_cov=13/12	major_frequency=8.929e-01	minor_base=T	minor_cov=2/1	new_cov=13/12	polymorphism_frequency=8.929e-01	polymorphism_score=2.0	prediction=consensus	ref_cov=2/1	total_cov=15/13
RA	977	.	NC_000913	3244	0	C	T	bias_e_value=4166710	bias_p_value=0.897679	consensus_score=78.0	fisher_strand_p_value=0.599555	frequency=1	ks_quality_p_value=0.972729	major_base=T	major_cov=13/15	major_frequency=9.032e-01	minor_base=C	minor_cov=2/1	new_cov=13/15	polymorphism_frequency=9.032e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=2/1	total_cov=15/17
RA	978	.	NC_000913	3424	0	A	T	bias_e_value=4636360	bias_p_value=0.99886	consensus_score=125.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.952625	major_base=T	major_cov=25/18	major_frequency=9.348e-01	minor_base=A	minor_cov=2/1	new_cov=25/18	polymorphism_frequency=9.348e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=2/1	total_cov=27/20
RA	979	.	NC_000913	3520	0	A	T	bias_e_value=3882580	bias_p_value=0.836465	consensus_score=97.4	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/16	major_frequency=9.429e-01	minor_base=G	minor_cov=0/2	new_cov=17/16	polymorphism_frequency=9.429e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=18/20
RA	980	.	NC_000913	3547	0	C	T	bias_e_value=4298320	bias_p_value=0.926033	consensus_score=92.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.640919	major_base=T	major_cov=13/19	major_frequency=9.412e-01	minor_base=C	minor_cov=1/1	new_cov=13/19	polymorphism_frequency=9.412e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=1/1	total_cov=14/21
RA	981	.	NC_000913	3622	0	A	T	bias_e_value=2686680	bias_p_value=0.578821	consensus_score=70.1	fisher_strand_p_value=0.295514	frequency=1	ks_quality_p_value=0.803435	major_base=T	major_cov=7/19	major_frequency=8.387e-01	minor_base=A	minor_cov=3/2	new_cov=7/19	polymorphism_frequency=8.387e-01	polymorphism_score=2.7	prediction=consensus	ref_cov=3/2	total_cov=10/21
RA	982	.	NC_000913	3763	0	C	T	bias_e_value=2817340	bias_p_value=0.606969	consensus_score=56.6	fisher_strand_p_value=0.545299	frequency=1	ks_quality_p_value=0.472367	major_base=T	major_cov=5/19	major_frequency=8.889e-01	minor_base=C	minor_cov=1/2	new_cov=5/19	polymorphism_frequency=8.889e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/2	total_cov=8/21
RA	983	.	NC_000913	3937	0	A	G	bias_e_value=4528070	bias_p_value=0.97553	consensus_score=64.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.787093	major_base=G	major_cov=15/14	major_frequency=8.286e-01	minor_base=A	minor_cov=3/3	new_cov=15/14	polymorphism_frequency=8.286e-01	polymorphism_score=3.8	prediction=consensus	ref_cov=3/3	total_cov=18/18
RA	984	.	NC_000913	4102	0	T	C	bias_e_value=4430770	bias_p_value=0.954568	consensus_score=59.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.714123	major_base=C	major_cov=12/15	major_frequency=8.182e-01	minor_base=T	minor_cov=3/3	new_cov=12/15	polymorphism_frequency=8.182e-01	polymorphism_score=5.8	prediction=consensus	ref_cov=3/3	total_cov=16/18
RA	985	.	NC_000913	4336	0	A	G	bias_e_value=3636450	bias_p_value=0.783438	consensus_score=90.7	fisher_strand_p_value=0.432897	frequency=1	ks_quality_p_value=0.967782	major_base=G	major_cov=15/23	major_frequency=8.444e-01	minor_base=A	minor_cov=4/3	new_cov=15/23	polymorphism_frequency=8.444e-01	polymorphism_score=4.7	prediction=consensus	ref_cov=4/3	total_cov=20/26
RA	986	.	NC_000913	4351	0	A	G	bias_e_value=4584200	bias_p_value=0.987623	consensus_score=93.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.846848	major_base=G	major_cov=17/24	major_frequency=8.723e-01	minor_base=A	minor_cov=3/3	new_cov=17/24	polymorphism_frequency=8.723e-01	polymorphism_score=3.0	prediction=consensus	ref_cov=3/3	total_cov=20/27
RA	987	.	NC_000913	4363	0	G	A	bias_e_value=4378100	bias_p_value=0.943221	consensus_score=90.0	fisher_strand_p_value=0.682529	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/22	major_frequency=8.605e-01	minor_base=G	minor_cov=3/3	new_cov=15/22	polymorphism_frequency=8.605e-01	polymorphism_score=4.6	prediction=consensus	ref_cov=3/3	total_cov=18/27
RA	988	.	NC_000913	4420	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=106.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/21	major_frequency=8.974e-01	minor_base=T	minor_cov=1/3	new_cov=14/21	polymorphism_frequency=8.974e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=1/3	total_cov=15/24
RA	989	.	NC_000913	4441	0	G	A	bias_e_value=4561340	bias_p_value=0.982698	consensus_score=100.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.819838	major_base=A	major_cov=15/22	major_frequency=9.250e-01	minor_base=G	minor_cov=1/2	new_cov=15/22	polymorphism_frequency=9.250e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/2	total_cov=16/24
RA	990	.	NC_000913	4442	0	A	G	bias_e_value=4600820	bias_p_value=0.991203	consensus_score=96.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.870325	major_base=G	major_cov=14/22	major_frequency=9.000e-01	minor_base=A	minor_cov=2/2	new_cov=14/22	polymorphism_frequency=9.000e-01	polymorphism_score=-0.7	prediction=consensus	ref_cov=2/2	total_cov=16/24
RA	991	.	NC_000913	4780	0	T	C	bias_e_value=4520930	bias_p_value=0.973991	consensus_score=84.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.78077	major_base=C	major_cov=15/18	major_frequency=9.167e-01	minor_base=T	minor_cov=1/2	new_cov=15/18	polymorphism_frequency=9.167e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/2	total_cov=17/20
RA	992	.	NC_000913	4804	0	T	G	bias_e_value=3525220	bias_p_value=0.759476	consensus_score=70.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.392396	major_base=G	major_cov=11/18	major_frequency=9.355e-01	minor_base=T	minor_cov=1/1	new_cov=11/18	polymorphism_frequency=9.355e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/1	total_cov=13/19
RA	993	.	NC_000913	4822	0	T	C	bias_e_value=1209980	bias_p_value=0.260679	consensus_score=78.9	fisher_strand_p_value=0.387097	frequency=1	ks_quality_p_value=0.185255	major_base=C	major_cov=11/19	major_frequency=9.677e-01	minor_base=T	minor_cov=1/0	new_cov=11/19	polymorphism_frequency=9.677e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=12/19
RA	994	.	NC_000913	5067	0	C	.	bias_e_value=3814560	bias_p_value=0.821812	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.3	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.765928	major_base=.	major_cov=4/6	major_frequency=6.667e-01	minor_base=C	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	995	.	NC_000913	5183	0	A	C	bias_e_value=242066	bias_p_value=0.0521509	consensus_score=29.6	fisher_strand_p_value=0.0823529	frequency=1	ks_quality_p_value=0.111239	major_base=C	major_cov=5/9	major_frequency=8.235e-01	minor_base=A	minor_cov=3/0	new_cov=5/9	polymorphism_frequency=8.235e-01	polymorphism_score=1.4	prediction=consensus	ref_cov=3/0	total_cov=8/9
RA	996	.	NC_000913	5234	0	G	A	bias_e_value=4624370	bias_p_value=0.996276	consensus_score=31.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.914947	major_base=A	major_cov=7/8	major_frequency=8.333e-01	minor_base=G	minor_cov=2/1	new_cov=7/8	polymorphism_frequency=8.333e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=2/1	total_cov=9/10
RA	997	.	NC_000913	5442	0	T	C	bias_e_value=2728430	bias_p_value=0.587813	consensus_score=40.4	fisher_strand_p_value=0.264252	frequency=1	ks_quality_p_value=0.922371	major_base=C	major_cov=12/6	major_frequency=8.182e-01	minor_base=T	minor_cov=1/3	new_cov=12/6	polymorphism_frequency=8.182e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=1/3	total_cov=13/9
RA	998	.	NC_000913	5603	0	T	G	bias_e_value=3757080	bias_p_value=0.809427	consensus_score=52.3	fisher_strand_p_value=0.481884	frequency=1	ks_quality_p_value=0.934091	major_base=G	major_cov=11/11	major_frequency=9.167e-01	minor_base=T	minor_cov=2/0	new_cov=11/11	polymorphism_frequency=9.167e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=2/0	total_cov=13/11
RA	999	.	NC_000913	5642	0	A	C	bias_e_value=3537000	bias_p_value=0.762013	consensus_score=52.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.395118	major_base=C	major_cov=15/11	major_frequency=9.286e-01	minor_base=A	minor_cov=1/1	new_cov=15/11	polymorphism_frequency=9.286e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/1	total_cov=17/12
RA	1000	.	NC_000913	5732	0	T	G	bias_e_value=4098210	bias_p_value=0.882921	consensus_score=99.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.556949	major_base=G	major_cov=16/17	major_frequency=9.429e-01	minor_base=T	minor_cov=1/1	new_cov=16/17	polymorphism_frequency=9.429e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/1	total_cov=18/18
RA	1001	.	NC_000913	5806	0	G	A	bias_e_value=4472480	bias_p_value=0.963553	consensus_score=88.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.742454	major_base=A	major_cov=17/15	major_frequency=9.412e-01	minor_base=G	minor_cov=1/1	new_cov=17/15	polymorphism_frequency=9.412e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/1	total_cov=18/16
RA	1002	.	NC_000913	5851	0	G	T	bias_e_value=2115060	bias_p_value=0.45567	consensus_score=92.1	fisher_strand_p_value=0.46875	frequency=1	ks_quality_p_value=0.3442	major_base=T	major_cov=17/14	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=17/14	polymorphism_frequency=9.688e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=17/15
RA	1003	.	NC_000913	6106	0	G	C	consensus_score=51.0	frequency=1	major_base=C	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	1004	.	NC_000913	6239	0	G	T	bias_e_value=4189900	bias_p_value=0.902674	consensus_score=32.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.592609	major_base=T	major_cov=11/6	major_frequency=8.947e-01	minor_base=G	minor_cov=2/0	new_cov=11/6	polymorphism_frequency=8.947e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=2/0	total_cov=13/6
RA	1005	.	NC_000913	6349	0	C	T	bias_e_value=3904480	bias_p_value=0.841182	consensus_score=68.6	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/11	major_frequency=9.231e-01	minor_base=C	minor_cov=2/0	new_cov=13/11	polymorphism_frequency=9.231e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=2/0	total_cov=15/11
RA	1006	.	NC_000913	6502	0	T	A	bias_e_value=1439510	bias_p_value=0.310129	consensus_score=62.3	fisher_strand_p_value=0.230769	frequency=1	ks_quality_p_value=0.396164	major_base=A	major_cov=12/12	major_frequency=8.889e-01	minor_base=T	minor_cov=3/0	new_cov=12/12	polymorphism_frequency=8.889e-01	polymorphism_score=2.4	prediction=consensus	ref_cov=3/0	total_cov=15/12
RA	1007	.	NC_000913	6574	0	A	G	bias_e_value=3157060	bias_p_value=0.68016	consensus_score=44.3	fisher_strand_p_value=0.493506	frequency=1	ks_quality_p_value=0.640533	major_base=G	major_cov=11/9	major_frequency=9.091e-01	minor_base=A	minor_cov=2/0	new_cov=11/9	polymorphism_frequency=9.091e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=2/0	total_cov=14/9
RA	1008	.	NC_000913	6595	0	T	C	bias_e_value=2155590	bias_p_value=0.4644	consensus_score=54.7	fisher_strand_p_value=0.238462	frequency=1	ks_quality_p_value=0.696837	major_base=C	major_cov=12/11	major_frequency=8.846e-01	minor_base=T	minor_cov=3/0	new_cov=12/11	polymorphism_frequency=8.846e-01	polymorphism_score=1.1	prediction=consensus	ref_cov=3/0	total_cov=15/11
RA	1009	.	NC_000913	6748	0	G	A	bias_e_value=3705650	bias_p_value=0.798347	consensus_score=51.1	fisher_strand_p_value=0.492754	frequency=1	ks_quality_p_value=0.885846	major_base=A	major_cov=10/12	major_frequency=9.167e-01	minor_base=G	minor_cov=0/2	new_cov=10/12	polymorphism_frequency=9.167e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/2	total_cov=10/14
RA	1010	.	NC_000913	6850	0	A	G	bias_e_value=4364950	bias_p_value=0.940387	consensus_score=51.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.675213	major_base=G	major_cov=13/9	major_frequency=8.800e-01	minor_base=A	minor_cov=2/1	new_cov=13/9	polymorphism_frequency=8.800e-01	polymorphism_score=1.1	prediction=consensus	ref_cov=2/1	total_cov=15/10
RA	1011	.	NC_000913	6898	0	A	G	bias_e_value=3841240	bias_p_value=0.827558	consensus_score=55.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.473591	major_base=G	major_cov=14/7	major_frequency=9.130e-01	minor_base=A	minor_cov=2/0	new_cov=14/7	polymorphism_frequency=9.130e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=2/0	total_cov=16/7
RA	1012	.	NC_000913	6933	0	G	A	bias_e_value=4614880	bias_p_value=0.994232	consensus_score=41.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.894532	major_base=A	major_cov=13/4	major_frequency=8.947e-01	minor_base=G	minor_cov=2/0	new_cov=13/4	polymorphism_frequency=8.947e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=2/0	total_cov=15/4
RA	1013	.	NC_000913	7132	0	A	C	consensus_score=27.1	frequency=1	major_base=C	major_cov=8/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/4
RA	1014	.	NC_000913	7297	0	T	C	bias_e_value=3428830	bias_p_value=0.738708	consensus_score=64.5	fisher_strand_p_value=0.507692	frequency=1	ks_quality_p_value=0.730444	major_base=C	major_cov=14/10	major_frequency=9.231e-01	minor_base=T	minor_cov=2/0	new_cov=14/10	polymorphism_frequency=9.231e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=2/0	total_cov=16/10
RA	1015	.	NC_000913	7342	0	G	C	bias_e_value=4485640	bias_p_value=0.96639	consensus_score=88.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.752194	major_base=C	major_cov=15/14	major_frequency=9.355e-01	minor_base=G	minor_cov=1/1	new_cov=15/14	polymorphism_frequency=9.355e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=1/1	total_cov=16/15
RA	1016	.	NC_000913	7384	0	T	C	bias_e_value=4588100	bias_p_value=0.988463	consensus_score=81.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.851992	major_base=C	major_cov=14/15	major_frequency=9.355e-01	minor_base=T	minor_cov=1/1	new_cov=14/15	polymorphism_frequency=9.355e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=15/16
RA	1017	.	NC_000913	7395	0	T	C	bias_e_value=4298060	bias_p_value=0.925975	consensus_score=75.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.640789	major_base=C	major_cov=12/14	major_frequency=9.286e-01	minor_base=T	minor_cov=1/1	new_cov=12/14	polymorphism_frequency=9.286e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=13/15
RA	1018	.	NC_000913	7414	0	G	A	bias_e_value=3546350	bias_p_value=0.764028	consensus_score=64.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.397295	major_base=A	major_cov=12/12	major_frequency=9.231e-01	minor_base=G	minor_cov=1/1	new_cov=12/12	polymorphism_frequency=9.231e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/1	total_cov=13/14
RA	1019	.	NC_000913	7456	0	G	T	bias_e_value=4616840	bias_p_value=0.994654	consensus_score=45.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.898397	major_base=T	major_cov=11/10	major_frequency=8.750e-01	minor_base=G	minor_cov=1/2	new_cov=11/10	polymorphism_frequency=8.750e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/2	total_cov=12/12
RA	1020	.	NC_000913	7459	0	G	C	bias_e_value=4390980	bias_p_value=0.945996	consensus_score=63.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.689898	major_base=C	major_cov=11/11	major_frequency=9.167e-01	minor_base=G	minor_cov=1/1	new_cov=11/11	polymorphism_frequency=9.167e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=1/1	total_cov=12/12
RA	1021	.	NC_000913	7474	0	T	C	bias_e_value=4180080	bias_p_value=0.900559	consensus_score=59.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.588593	major_base=C	major_cov=12/9	major_frequency=9.130e-01	minor_base=T	minor_cov=1/1	new_cov=12/9	polymorphism_frequency=9.130e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/1	total_cov=13/10
RA	1022	.	NC_000913	7479	0	C	T	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=56.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997932	major_base=T	major_cov=12/9	major_frequency=9.130e-01	minor_base=C	minor_cov=1/1	new_cov=12/9	polymorphism_frequency=9.130e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/1	total_cov=13/10
RA	1023	.	NC_000913	7498	0	A	G	bias_e_value=4637200	bias_p_value=0.999041	consensus_score=46.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.956529	major_base=G	major_cov=11/7	major_frequency=9.000e-01	minor_base=A	minor_cov=1/1	new_cov=11/7	polymorphism_frequency=9.000e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/1	total_cov=12/9
RA	1024	.	NC_000913	7598	0	A	G	consensus_score=53.8	frequency=1	major_base=G	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	1025	.	NC_000913	7600	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=52.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=10/9	major_frequency=9.500e-01	minor_base=C	minor_cov=1/0	new_cov=10/9	polymorphism_frequency=9.500e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	1026	.	NC_000913	7618	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=52.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=10/9	major_frequency=9.500e-01	minor_base=T	minor_cov=0/1	new_cov=10/9	polymorphism_frequency=9.500e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/1	total_cov=11/10
RA	1027	.	NC_000913	7624	0	C	G	bias_e_value=4604830	bias_p_value=0.992067	consensus_score=49.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.87671	major_base=G	major_cov=10/9	major_frequency=9.500e-01	minor_base=A	minor_cov=0/1	new_cov=10/9	polymorphism_frequency=9.500e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=10/10
RA	1028	.	NC_000913	7627	0	A	G	consensus_score=49.0	frequency=1	major_base=G	major_cov=10/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/10
RA	1029	.	NC_000913	7681	0	A	G	bias_e_value=4259500	bias_p_value=0.917669	consensus_score=44.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.622704	major_base=G	major_cov=6/12	major_frequency=9.474e-01	minor_base=A	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	1030	.	NC_000913	7711	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=34.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=3/10	major_frequency=8.667e-01	minor_base=G	minor_cov=0/2	new_cov=3/10	polymorphism_frequency=8.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=3/14
RA	1031	.	NC_000913	7939	0	G	A	bias_e_value=3413470	bias_p_value=0.735399	consensus_score=82.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.36752	major_base=A	major_cov=15/16	major_frequency=9.394e-01	minor_base=G	minor_cov=1/1	new_cov=15/16	polymorphism_frequency=9.394e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=16/17
RA	1032	.	NC_000913	8963	0	G	T	bias_e_value=4174710	bias_p_value=0.899402	consensus_score=54.8	fisher_strand_p_value=0.596273	frequency=1	ks_quality_p_value=0.983471	major_base=T	major_cov=10/10	major_frequency=8.333e-01	minor_base=G	minor_cov=1/3	new_cov=10/10	polymorphism_frequency=8.333e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/3	total_cov=11/13
RA	1033	.	NC_000913	8975	0	G	T	bias_e_value=3969750	bias_p_value=0.855244	consensus_score=62.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.512741	major_base=T	major_cov=10/12	major_frequency=9.565e-01	minor_base=G	minor_cov=0/1	new_cov=10/12	polymorphism_frequency=9.565e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/1	total_cov=10/13
RA	1034	.	NC_000913	8976	0	G	A	bias_e_value=4361830	bias_p_value=0.939715	consensus_score=60.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.673507	major_base=A	major_cov=10/12	major_frequency=9.565e-01	minor_base=G	minor_cov=0/1	new_cov=10/12	polymorphism_frequency=9.565e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=10/13
RA	1035	.	NC_000913	8996	0	G	T	bias_e_value=4631020	bias_p_value=0.997709	consensus_score=58.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.93308	major_base=T	major_cov=9/12	major_frequency=9.545e-01	minor_base=G	minor_cov=0/1	new_cov=9/12	polymorphism_frequency=9.545e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=10/13
RA	1036	.	NC_000913	9488	0	G	A	consensus_score=67.9	frequency=1	major_base=A	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	1037	.	NC_000913	9623	0	C	A	bias_e_value=4338610	bias_p_value=0.934712	consensus_score=75.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.661138	major_base=A	major_cov=15/12	major_frequency=9.310e-01	minor_base=C	minor_cov=1/1	new_cov=15/12	polymorphism_frequency=9.310e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/1	total_cov=16/14
RA	1038	.	NC_000913	9665	0	G	T	bias_e_value=4631780	bias_p_value=0.997874	consensus_score=65.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.935507	major_base=T	major_cov=14/13	major_frequency=9.000e-01	minor_base=G	minor_cov=2/1	new_cov=14/13	polymorphism_frequency=9.000e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=2/1	total_cov=16/14
RA	1039	.	NC_000913	9668	0	C	T	bias_e_value=4641530	bias_p_value=0.999973	consensus_score=71.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99262	major_base=T	major_cov=14/13	major_frequency=9.000e-01	minor_base=C	minor_cov=2/1	new_cov=14/13	polymorphism_frequency=9.000e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=2/1	total_cov=16/14
RA	1040	.	NC_000913	9754	0	A	C	bias_e_value=4054280	bias_p_value=0.873456	consensus_score=92.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.541163	major_base=C	major_cov=21/14	major_frequency=9.211e-01	minor_base=A	minor_cov=2/1	new_cov=21/14	polymorphism_frequency=9.211e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=2/1	total_cov=23/15
RA	1041	.	NC_000913	9839	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=52.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=12/9	major_frequency=8.750e-01	minor_base=G	minor_cov=2/1	new_cov=12/9	polymorphism_frequency=8.750e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=2/1	total_cov=14/10
RA	1042	.	NC_000913	9851	0	A	T	bias_e_value=2753030	bias_p_value=0.593114	consensus_score=59.6	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.618783	major_base=T	major_cov=15/9	major_frequency=9.600e-01	minor_base=A	minor_cov=0/1	new_cov=15/9	polymorphism_frequency=9.600e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=15/10
RA	1043	.	NC_000913	10006	0	G	A	bias_e_value=2606250	bias_p_value=0.561492	consensus_score=41.4	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=0.479364	major_base=A	major_cov=9/7	major_frequency=9.412e-01	minor_base=G	minor_cov=0/1	new_cov=9/7	polymorphism_frequency=9.412e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=9/9
RA	1044	.	NC_000913	10015	0	G	A	bias_e_value=4592940	bias_p_value=0.989505	consensus_score=35.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.858661	major_base=A	major_cov=7/7	major_frequency=9.333e-01	minor_base=G	minor_cov=0/1	new_cov=7/7	polymorphism_frequency=9.333e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=8/8
RA	1045	.	NC_000913	10024	0	C	A	bias_e_value=3861100	bias_p_value=0.831838	consensus_score=37.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.479364	major_base=A	major_cov=8/8	major_frequency=9.412e-01	minor_base=C	minor_cov=0/1	new_cov=8/8	polymorphism_frequency=9.412e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/1	total_cov=8/9
RA	1046	.	NC_000913	10099	0	G	A	consensus_score=64.3	frequency=1	major_base=A	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1047	.	NC_000913	10260	0	G	A	bias_e_value=2357230	bias_p_value=0.507843	consensus_score=70.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.191391	major_base=A	major_cov=13/14	major_frequency=9.643e-01	minor_base=G	minor_cov=1/0	new_cov=13/14	polymorphism_frequency=9.643e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=14/14
RA	1048	.	NC_000913	10336	0	A	G	bias_e_value=3836980	bias_p_value=0.826641	consensus_score=62.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.472367	major_base=G	major_cov=13/11	major_frequency=9.600e-01	minor_base=A	minor_cov=1/0	new_cov=13/11	polymorphism_frequency=9.600e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=14/11
RA	1049	.	NC_000913	10548	0	T	A	bias_e_value=4334950	bias_p_value=0.933924	consensus_score=57.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.659241	major_base=A	major_cov=12/8	major_frequency=8.333e-01	minor_base=T	minor_cov=3/1	new_cov=12/8	polymorphism_frequency=8.333e-01	polymorphism_score=3.7	prediction=consensus	ref_cov=3/1	total_cov=16/9
RA	1050	.	NC_000913	10637	0	C	A	bias_e_value=3677400	bias_p_value=0.792261	consensus_score=55.4	fisher_strand_p_value=0.462451	frequency=1	ks_quality_p_value=0.928176	major_base=A	major_cov=16/5	major_frequency=9.130e-01	minor_base=C	minor_cov=1/1	new_cov=16/5	polymorphism_frequency=9.130e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/1	total_cov=17/6
RA	1051	.	NC_000913	10642	0	A	G	bias_e_value=3622330	bias_p_value=0.780397	consensus_score=50.6	fisher_strand_p_value=0.480519	frequency=1	ks_quality_p_value=0.864629	major_base=G	major_cov=15/5	major_frequency=9.091e-01	minor_base=A	minor_cov=1/1	new_cov=15/5	polymorphism_frequency=9.091e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/1	total_cov=17/6
RA	1052	.	NC_000913	10703	0	C	T	bias_e_value=3952570	bias_p_value=0.851544	consensus_score=57.9	fisher_strand_p_value=0.507246	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/6	major_frequency=9.167e-01	minor_base=C	minor_cov=1/1	new_cov=16/6	polymorphism_frequency=9.167e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=1/1	total_cov=17/8
RA	1053	.	NC_000913	10718	0	G	A	bias_e_value=2815990	bias_p_value=0.606678	consensus_score=54.6	fisher_strand_p_value=0.318182	frequency=1	ks_quality_p_value=0.808867	major_base=A	major_cov=15/6	major_frequency=9.545e-01	minor_base=G	minor_cov=0/1	new_cov=15/6	polymorphism_frequency=9.545e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=16/8
RA	1054	.	NC_000913	10747	0	G	A	bias_e_value=2220790	bias_p_value=0.478447	consensus_score=79.2	fisher_strand_p_value=0.366667	frequency=1	ks_quality_p_value=0.474816	major_base=A	major_cov=19/10	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=19/10	polymorphism_frequency=9.667e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=19/11
RA	1055	.	NC_000913	10751	0	C	T	bias_e_value=3198760	bias_p_value=0.689143	consensus_score=80.5	fisher_strand_p_value=0.37931	frequency=1	ks_quality_p_value=0.854161	major_base=T	major_cov=18/10	major_frequency=9.655e-01	minor_base=C	minor_cov=0/1	new_cov=18/10	polymorphism_frequency=9.655e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=18/11
RA	1056	.	NC_000913	10754	0	A	G	bias_e_value=3049370	bias_p_value=0.656958	consensus_score=76.2	fisher_strand_p_value=0.37931	frequency=1	ks_quality_p_value=0.781683	major_base=G	major_cov=18/10	major_frequency=9.655e-01	minor_base=A	minor_cov=0/1	new_cov=18/10	polymorphism_frequency=9.655e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=18/11
RA	1057	.	NC_000913	10757	0	T	C	bias_e_value=995733	bias_p_value=0.214521	consensus_score=79.3	fisher_strand_p_value=0.37931	frequency=1	ks_quality_p_value=0.144998	major_base=C	major_cov=18/10	major_frequency=9.655e-01	minor_base=T	minor_cov=0/1	new_cov=18/10	polymorphism_frequency=9.655e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=18/11
RA	1058	.	NC_000913	10772	0	C	A	bias_e_value=1848450	bias_p_value=0.398231	consensus_score=77.7	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.328689	major_base=A	major_cov=18/11	major_frequency=9.667e-01	minor_base=C	minor_cov=0/1	new_cov=18/11	polymorphism_frequency=9.667e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=18/12
RA	1059	.	NC_000913	10802	0	T	C	bias_e_value=3034250	bias_p_value=0.653699	consensus_score=82.7	fisher_strand_p_value=0.433333	frequency=1	ks_quality_p_value=0.678069	major_base=C	major_cov=17/12	major_frequency=9.667e-01	minor_base=T	minor_cov=0/1	new_cov=17/12	polymorphism_frequency=9.667e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=17/13
RA	1060	.	NC_000913	10840	0	G	A	bias_e_value=4028690	bias_p_value=0.867943	consensus_score=76.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.532303	major_base=A	major_cov=14/14	major_frequency=9.655e-01	minor_base=G	minor_cov=0/1	new_cov=14/14	polymorphism_frequency=9.655e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=14/15
RA	1061	.	NC_000913	10865	0	A	G	bias_e_value=4631940	bias_p_value=0.997907	consensus_score=75.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.936002	major_base=G	major_cov=14/13	major_frequency=9.643e-01	minor_base=A	minor_cov=0/1	new_cov=14/13	polymorphism_frequency=9.643e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=14/14
RA	1062	.	NC_000913	10973	0	T	A	bias_e_value=3615320	bias_p_value=0.778886	consensus_score=89.0	fisher_strand_p_value=0.441176	frequency=1	ks_quality_p_value=0.937844	major_base=A	major_cov=14/19	major_frequency=9.706e-01	minor_base=C	minor_cov=1/0	new_cov=14/19	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/19
RA	1063	.	NC_000913	10985	0	A	G	bias_e_value=3262820	bias_p_value=0.702944	consensus_score=101.0	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.785043	major_base=G	major_cov=14/20	major_frequency=9.714e-01	minor_base=A	minor_cov=1/0	new_cov=14/20	polymorphism_frequency=9.714e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=15/20
RA	1064	.	NC_000913	11021	0	T	C	bias_e_value=1326380	bias_p_value=0.285755	consensus_score=106.7	fisher_strand_p_value=0.0909006	frequency=1	ks_quality_p_value=0.896244	major_base=C	major_cov=16/22	major_frequency=9.268e-01	minor_base=T	minor_cov=3/0	new_cov=16/22	polymorphism_frequency=9.268e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=3/0	total_cov=19/22
RA	1065	.	NC_000913	11063	0	C	T	bias_e_value=2015410	bias_p_value=0.434201	consensus_score=93.1	fisher_strand_p_value=0.161834	frequency=1	ks_quality_p_value=0.925682	major_base=T	major_cov=14/20	major_frequency=8.718e-01	minor_base=C	minor_cov=4/1	new_cov=14/20	polymorphism_frequency=8.718e-01	polymorphism_score=4.8	prediction=consensus	ref_cov=4/1	total_cov=20/23
RA	1066	.	NC_000913	11156	0	G	A	bias_e_value=2548980	bias_p_value=0.549154	consensus_score=91.3	fisher_strand_p_value=0.217809	frequency=1	ks_quality_p_value=0.998116	major_base=A	major_cov=14/23	major_frequency=8.605e-01	minor_base=G	minor_cov=4/2	new_cov=14/23	polymorphism_frequency=8.605e-01	polymorphism_score=6.8	prediction=consensus	ref_cov=4/2	total_cov=18/25
RA	1067	.	NC_000913	11225	0	C	T	bias_e_value=3893370	bias_p_value=0.83879	consensus_score=51.6	fisher_strand_p_value=0.653936	frequency=1	ks_quality_p_value=0.747701	major_base=T	major_cov=12/13	major_frequency=8.065e-01	minor_base=C	minor_cov=4/2	new_cov=12/13	polymorphism_frequency=8.065e-01	polymorphism_score=9.4	prediction=consensus	ref_cov=4/2	total_cov=16/15
RA	1068	.	NC_000913	11366	0	C	T	bias_e_value=2489650	bias_p_value=0.536371	consensus_score=57.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.209127	major_base=T	major_cov=12/12	major_frequency=8.889e-01	minor_base=C	minor_cov=1/2	new_cov=12/12	polymorphism_frequency=8.889e-01	polymorphism_score=1.5	prediction=consensus	ref_cov=1/2	total_cov=13/14
RA	1069	.	NC_000913	11439	0	C	G	bias_e_value=3334790	bias_p_value=0.718448	consensus_score=101.5	fisher_strand_p_value=0.603861	frequency=1	ks_quality_p_value=0.5812	major_base=G	major_cov=18/16	major_frequency=9.189e-01	minor_base=C	minor_cov=1/2	new_cov=18/16	polymorphism_frequency=9.189e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=1/2	total_cov=19/18
RA	1070	.	NC_000913	11481	0	G	A	bias_e_value=2848770	bias_p_value=0.613741	consensus_score=84.8	fisher_strand_p_value=0.328185	frequency=1	ks_quality_p_value=0.800187	major_base=A	major_cov=19/15	major_frequency=8.947e-01	minor_base=G	minor_cov=1/3	new_cov=19/15	polymorphism_frequency=8.947e-01	polymorphism_score=2.3	prediction=consensus	ref_cov=1/3	total_cov=20/18
RA	1071	.	NC_000913	11541	0	G	A	bias_e_value=420315	bias_p_value=0.0905529	consensus_score=84.0	fisher_strand_p_value=0.0935829	frequency=1	ks_quality_p_value=0.192981	major_base=A	major_cov=18/13	major_frequency=9.118e-01	minor_base=G	minor_cov=0/3	new_cov=18/13	polymorphism_frequency=9.118e-01	polymorphism_score=0.9	prediction=consensus	ref_cov=0/3	total_cov=18/16
RA	1072	.	NC_000913	11695	0	G	A	bias_e_value=2096970	bias_p_value=0.451772	consensus_score=65.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.159215	major_base=A	major_cov=13/14	major_frequency=8.438e-01	minor_base=G	minor_cov=2/3	new_cov=13/14	polymorphism_frequency=8.438e-01	polymorphism_score=4.3	prediction=consensus	ref_cov=2/3	total_cov=15/17
RA	1073	.	NC_000913	11814	0	G	A	bias_e_value=4221520	bias_p_value=0.909486	consensus_score=67.0	fisher_strand_p_value=0.605911	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=12/13	major_frequency=8.621e-01	minor_base=G	minor_cov=1/3	new_cov=12/13	polymorphism_frequency=8.621e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=1/3	total_cov=13/16
RA	1074	.	NC_000913	11854	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=62.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=11/13	major_frequency=8.276e-01	minor_base=A	minor_cov=2/3	new_cov=11/13	polymorphism_frequency=8.276e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=2/3	total_cov=13/16
RA	1075	.	NC_000913	11861	0	C	T	bias_e_value=4191140	bias_p_value=0.902941	consensus_score=54.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.593119	major_base=T	major_cov=11/12	major_frequency=8.214e-01	minor_base=C	minor_cov=2/3	new_cov=11/12	polymorphism_frequency=8.214e-01	polymorphism_score=4.6	prediction=consensus	ref_cov=2/3	total_cov=13/16
RA	1076	.	NC_000913	12237	0	C	T	bias_e_value=4351790	bias_p_value=0.937552	consensus_score=66.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.668089	major_base=T	major_cov=11/13	major_frequency=9.600e-01	minor_base=C	minor_cov=0/1	new_cov=11/13	polymorphism_frequency=9.600e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=11/14
RA	1077	.	NC_000913	12309	0	A	G	bias_e_value=4610190	bias_p_value=0.993221	consensus_score=60.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.885846	major_base=G	major_cov=11/11	major_frequency=9.167e-01	minor_base=A	minor_cov=1/1	new_cov=11/11	polymorphism_frequency=9.167e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/1	total_cov=12/12
RA	1078	.	NC_000913	12357	0	T	C	bias_e_value=3442240	bias_p_value=0.741597	consensus_score=52.7	fisher_strand_p_value=0.380952	frequency=1	ks_quality_p_value=0.981133	major_base=C	major_cov=13/7	major_frequency=9.524e-01	minor_base=T	minor_cov=0/1	new_cov=13/7	polymorphism_frequency=9.524e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/1	total_cov=13/8
RA	1079	.	NC_000913	12384	0	T	C	bias_e_value=1784350	bias_p_value=0.384421	consensus_score=47.1	fisher_strand_p_value=0.35	frequency=1	ks_quality_p_value=0.356444	major_base=C	major_cov=13/6	major_frequency=9.500e-01	minor_base=T	minor_cov=0/1	new_cov=13/6	polymorphism_frequency=9.500e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=14/7
RA	1080	.	NC_000913	12507	0	T	C	bias_e_value=2292380	bias_p_value=0.493871	consensus_score=49.1	fisher_strand_p_value=0.452851	frequency=1	ks_quality_p_value=0.40422	major_base=C	major_cov=17/3	major_frequency=8.696e-01	minor_base=T	minor_cov=2/1	new_cov=17/3	polymorphism_frequency=8.696e-01	polymorphism_score=0.7	prediction=consensus	ref_cov=2/1	total_cov=21/4
RA	1081	.	NC_000913	12714	0	C	T	bias_e_value=4624920	bias_p_value=0.996395	consensus_score=55.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.916299	major_base=T	major_cov=10/12	major_frequency=8.462e-01	minor_base=C	minor_cov=2/2	new_cov=10/12	polymorphism_frequency=8.462e-01	polymorphism_score=2.5	prediction=consensus	ref_cov=2/2	total_cov=16/14
RA	1082	.	NC_000913	12846	0	G	T	bias_e_value=4042510	bias_p_value=0.87092	consensus_score=64.1	fisher_strand_p_value=0.597701	frequency=1	ks_quality_p_value=0.898539	major_base=T	major_cov=14/12	major_frequency=8.966e-01	minor_base=G	minor_cov=1/2	new_cov=14/12	polymorphism_frequency=8.966e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/2	total_cov=16/14
RA	1083	.	NC_000913	12879	0	T	C	bias_e_value=4641560	bias_p_value=0.99998	consensus_score=62.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99361	major_base=C	major_cov=13/11	major_frequency=9.231e-01	minor_base=T	minor_cov=1/1	new_cov=13/11	polymorphism_frequency=9.231e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/1	total_cov=14/12
RA	1084	.	NC_000913	13014	0	A	G	bias_e_value=3996890	bias_p_value=0.861092	consensus_score=109.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.52161	major_base=G	major_cov=20/18	major_frequency=9.268e-01	minor_base=A	minor_cov=2/1	new_cov=20/18	polymorphism_frequency=9.268e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=2/1	total_cov=22/19
RA	1085	.	NC_000913	13029	0	C	T	bias_e_value=3985740	bias_p_value=0.858691	consensus_score=101.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.517941	major_base=T	major_cov=17/19	major_frequency=9.474e-01	minor_base=C	minor_cov=1/1	new_cov=17/19	polymorphism_frequency=9.474e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=1/1	total_cov=18/21
RA	1086	.	NC_000913	13320	0	A	G	bias_e_value=4641570	bias_p_value=0.999982	consensus_score=85.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993958	major_base=G	major_cov=12/18	major_frequency=9.091e-01	minor_base=A	minor_cov=1/2	new_cov=12/18	polymorphism_frequency=9.091e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/2	total_cov=13/22
RA	1087	.	NC_000913	13539	0	A	G	bias_e_value=2582440	bias_p_value=0.556362	consensus_score=97.6	fisher_strand_p_value=0.227273	frequency=1	ks_quality_p_value=0.977487	major_base=G	major_cov=17/14	major_frequency=9.118e-01	minor_base=T	minor_cov=0/3	new_cov=17/14	polymorphism_frequency=9.118e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	1088	.	NC_000913	13866	0	G	A	bias_e_value=821350	bias_p_value=0.176952	consensus_score=38.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.0425717	major_base=A	major_cov=4/14	major_frequency=8.182e-01	minor_base=G	minor_cov=1/3	new_cov=4/14	polymorphism_frequency=8.182e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=1/3	total_cov=5/18
RA	1089	.	NC_000913	13932	0	A	G	bias_e_value=3247980	bias_p_value=0.699747	consensus_score=29.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.333524	major_base=G	major_cov=4/13	major_frequency=8.095e-01	minor_base=A	minor_cov=1/3	new_cov=4/13	polymorphism_frequency=8.095e-01	polymorphism_score=1.9	prediction=consensus	ref_cov=1/3	total_cov=5/17
RA	1090	.	NC_000913	14223	0	G	A	bias_e_value=3357100	bias_p_value=0.723255	consensus_score=51.1	fisher_strand_p_value=0.411255	frequency=1	ks_quality_p_value=0.864629	major_base=A	major_cov=16/4	major_frequency=9.091e-01	minor_base=G	minor_cov=1/1	new_cov=16/4	polymorphism_frequency=9.091e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=17/5
RA	1091	.	NC_000913	14232	0	G	A	bias_e_value=3208810	bias_p_value=0.691307	consensus_score=56.6	fisher_strand_p_value=0.462451	frequency=1	ks_quality_p_value=0.704761	major_base=A	major_cov=16/5	major_frequency=9.130e-01	minor_base=G	minor_cov=1/1	new_cov=16/5	polymorphism_frequency=9.130e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/1	total_cov=18/6
RA	1092	.	NC_000913	14401	0	C	T	bias_e_value=3700180	bias_p_value=0.79717	consensus_score=108.9	fisher_strand_p_value=0.586819	frequency=1	ks_quality_p_value=0.741432	major_base=T	major_cov=29/13	major_frequency=9.130e-01	minor_base=C	minor_cov=2/2	new_cov=29/13	polymorphism_frequency=9.130e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=2/2	total_cov=32/16
RA	1093	.	NC_000913	14647	0	T	C	bias_e_value=2506830	bias_p_value=0.540073	consensus_score=67.2	fisher_strand_p_value=0.606674	frequency=1	ks_quality_p_value=0.348623	major_base=C	major_cov=13/14	major_frequency=8.710e-01	minor_base=T	minor_cov=1/3	new_cov=13/14	polymorphism_frequency=8.710e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=1/3	total_cov=15/17
RA	1094	.	NC_000913	14686	0	C	T	bias_e_value=4594050	bias_p_value=0.989745	consensus_score=70.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.860245	major_base=T	major_cov=14/14	major_frequency=9.032e-01	minor_base=C	minor_cov=1/2	new_cov=14/14	polymorphism_frequency=9.032e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/2	total_cov=15/16
RA	1095	.	NC_000913	14698	0	C	T	bias_e_value=3772190	bias_p_value=0.812683	consensus_score=85.0	fisher_strand_p_value=0.58871	frequency=1	ks_quality_p_value=0.771561	major_base=T	major_cov=16/13	major_frequency=9.062e-01	minor_base=C	minor_cov=1/2	new_cov=16/13	polymorphism_frequency=9.062e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/2	total_cov=17/17
RA	1096	.	NC_000913	14701	0	T	C	bias_e_value=4640470	bias_p_value=0.999745	consensus_score=90.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.977487	major_base=C	major_cov=16/15	major_frequency=9.118e-01	minor_base=T	minor_cov=1/2	new_cov=16/15	polymorphism_frequency=9.118e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/2	total_cov=17/17
RA	1097	.	NC_000913	14704	0	A	G	bias_e_value=3034600	bias_p_value=0.653776	consensus_score=80.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.293892	major_base=G	major_cov=16/15	major_frequency=9.118e-01	minor_base=A	minor_cov=1/2	new_cov=16/15	polymorphism_frequency=9.118e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=1/2	total_cov=17/17
RA	1098	.	NC_000913	14956	0	G	C	bias_e_value=1969270	bias_p_value=0.424261	consensus_score=107.7	fisher_strand_p_value=0.283248	frequency=1	ks_quality_p_value=0.510573	major_base=C	major_cov=13/23	major_frequency=9.000e-01	minor_base=G	minor_cov=3/1	new_cov=13/23	polymorphism_frequency=9.000e-01	polymorphism_score=6.7	prediction=consensus	ref_cov=3/1	total_cov=16/24
RA	1099	.	NC_000913	15073	0	A	T	bias_e_value=4044430	bias_p_value=0.871335	consensus_score=117.3	fisher_strand_p_value=0.555749	frequency=1	ks_quality_p_value=0.96757	major_base=T	major_cov=15/24	major_frequency=9.286e-01	minor_base=A	minor_cov=2/1	new_cov=15/24	polymorphism_frequency=9.286e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=2/1	total_cov=17/26
RA	1100	.	NC_000913	15172	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=105.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=16/21	major_frequency=9.250e-01	minor_base=A	minor_cov=1/2	new_cov=16/21	polymorphism_frequency=9.250e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/2	total_cov=18/23
RA	1101	.	NC_000913	15174	0	G	A	bias_e_value=4638310	bias_p_value=0.999279	consensus_score=102.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.962269	major_base=A	major_cov=15/21	major_frequency=9.231e-01	minor_base=G	minor_cov=1/2	new_cov=15/21	polymorphism_frequency=9.231e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/2	total_cov=17/23
RA	1102	.	NC_000913	15226	0	C	T	bias_e_value=4007090	bias_p_value=0.86329	consensus_score=100.1	fisher_strand_p_value=0.531532	frequency=1	ks_quality_p_value=0.987721	major_base=T	major_cov=13/22	major_frequency=9.459e-01	minor_base=C	minor_cov=0/2	new_cov=13/22	polymorphism_frequency=9.459e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/2	total_cov=15/24
RA	1103	.	NC_000913	15328	0	C	T	bias_e_value=3467850	bias_p_value=0.747114	consensus_score=46.1	fisher_strand_p_value=0.525692	frequency=1	ks_quality_p_value=0.721742	major_base=T	major_cov=8/12	major_frequency=8.696e-01	minor_base=C	minor_cov=0/3	new_cov=8/12	polymorphism_frequency=8.696e-01	polymorphism_score=-0.5	prediction=consensus	ref_cov=0/3	total_cov=8/15
RA	1104	.	NC_000913	15338	0	A	T	bias_e_value=1748290	bias_p_value=0.376652	consensus_score=55.4	fisher_strand_p_value=0.534348	frequency=1	ks_quality_p_value=0.226537	major_base=T	major_cov=7/15	major_frequency=8.800e-01	minor_base=A	minor_cov=0/3	new_cov=7/15	polymorphism_frequency=8.800e-01	polymorphism_score=1.6	prediction=consensus	ref_cov=0/3	total_cov=7/18
RA	1105	.	NC_000913	15369	0	T	A	bias_e_value=3409850	bias_p_value=0.73462	consensus_score=36.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.366742	major_base=A	major_cov=5/12	major_frequency=8.947e-01	minor_base=T	minor_cov=0/2	new_cov=5/12	polymorphism_frequency=8.947e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=0/2	total_cov=5/14
RA	1106	.	NC_000913	16749	0	T	A	bias_e_value=3408440	bias_p_value=0.734316	consensus_score=35.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.36644	major_base=A	major_cov=12/3	major_frequency=8.824e-01	minor_base=T	minor_cov=2/0	new_cov=12/3	polymorphism_frequency=8.824e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=2/0	total_cov=14/4
RA	1107	.	NC_000913	16966	0	A	G	bias_e_value=4259500	bias_p_value=0.917669	consensus_score=42.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.622704	major_base=G	major_cov=10/8	major_frequency=9.474e-01	minor_base=A	minor_cov=1/0	new_cov=10/8	polymorphism_frequency=9.474e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=11/8
RA	1108	.	NC_000913	16981	0	G	A	bias_e_value=3906170	bias_p_value=0.841548	consensus_score=40.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.492824	major_base=A	major_cov=10/8	major_frequency=9.474e-01	minor_base=G	minor_cov=1/0	new_cov=10/8	polymorphism_frequency=9.474e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=11/8
RA	1109	.	NC_000913	17039	0	C	T	bias_e_value=4175280	bias_p_value=0.899524	consensus_score=15.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.586646	major_base=T	major_cov=7/3	major_frequency=8.333e-01	minor_base=C	minor_cov=1/1	new_cov=7/3	polymorphism_frequency=8.333e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=1/1	total_cov=8/5
RA	1110	.	NC_000913	17085	0	T	C	bias_e_value=3597720	bias_p_value=0.775095	consensus_score=12.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.409484	major_base=C	major_cov=4/3	major_frequency=8.750e-01	minor_base=T	minor_cov=1/0	new_cov=4/3	polymorphism_frequency=8.750e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=6/3
RA	1111	.	NC_000913	17175	0	C	T	bias_e_value=4447560	bias_p_value=0.958184	consensus_score=14.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.725112	major_base=T	major_cov=4/3	major_frequency=8.750e-01	minor_base=C	minor_cov=1/0	new_cov=4/3	polymorphism_frequency=8.750e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=5/3
RA	1112	.	NC_000913	17219	0	G	T	consensus_score=12.9	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	1113	.	NC_000913	17229	0	C	T	consensus_score=14.5	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	1114	.	NC_000913	17231	0	T	A	consensus_score=14.5	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	1115	.	NC_000913	17245	0	C	G	consensus_score=22.8	frequency=1	major_base=G	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	1116	.	NC_000913	17281	0	G	A	bias_e_value=4639130	bias_p_value=0.999457	consensus_score=18.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.967216	major_base=A	major_cov=7/3	major_frequency=8.333e-01	minor_base=G	minor_cov=1/1	new_cov=7/3	polymorphism_frequency=8.333e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/1	total_cov=8/4
RA	1117	.	NC_000913	17309	0	A	G	bias_e_value=3546250	bias_p_value=0.764006	consensus_score=26.9	fisher_strand_p_value=0.423077	frequency=1	ks_quality_p_value=0.939003	major_base=G	major_cov=9/2	major_frequency=8.462e-01	minor_base=A	minor_cov=1/1	new_cov=9/2	polymorphism_frequency=8.462e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/1	total_cov=10/3
RA	1118	.	NC_000913	17350	0	G	T	bias_e_value=4269070	bias_p_value=0.919731	consensus_score=32.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.627089	major_base=T	major_cov=11/3	major_frequency=9.333e-01	minor_base=G	minor_cov=1/0	new_cov=11/3	polymorphism_frequency=9.333e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/0	total_cov=12/3
RA	1119	.	NC_000913	17383	0	A	G	bias_e_value=3640010	bias_p_value=0.784205	consensus_score=39.7	fisher_strand_p_value=0.426471	frequency=1	ks_quality_p_value=0.984436	major_base=G	major_cov=12/3	major_frequency=8.824e-01	minor_base=A	minor_cov=1/1	new_cov=12/3	polymorphism_frequency=8.824e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/1	total_cov=13/4
RA	1120	.	NC_000913	17385	0	C	A	bias_e_value=4630790	bias_p_value=0.99766	consensus_score=30.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.932368	major_base=A	major_cov=11/3	major_frequency=8.235e-01	minor_base=C	minor_cov=2/1	new_cov=11/3	polymorphism_frequency=8.235e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=2/1	total_cov=13/4
RA	1121	.	NC_000913	17399	0	A	G	consensus_score=39.5	frequency=1	major_base=G	major_cov=12/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/2
RA	1122	.	NC_000913	17436	0	C	T	consensus_score=39.8	frequency=1	major_base=T	major_cov=11/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/3
RA	1123	.	NC_000913	17578	0	C	T	bias_e_value=2426360	bias_p_value=0.522736	consensus_score=24.2	fisher_strand_p_value=0.472527	frequency=1	ks_quality_p_value=0.424373	major_base=T	major_cov=6/6	major_frequency=8.571e-01	minor_base=C	minor_cov=2/0	new_cov=6/6	polymorphism_frequency=8.571e-01	polymorphism_score=-0.9	prediction=consensus	ref_cov=2/0	total_cov=8/6
RA	1124	.	NC_000913	17809	0	G	T	bias_e_value=4633370	bias_p_value=0.998216	consensus_score=49.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.940868	major_base=T	major_cov=13/8	major_frequency=8.400e-01	minor_base=G	minor_cov=2/2	new_cov=13/8	polymorphism_frequency=8.400e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=2/2	total_cov=15/10
RA	1125	.	NC_000913	17830	0	T	C	bias_e_value=2858710	bias_p_value=0.615882	consensus_score=57.5	fisher_strand_p_value=0.264214	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=15/7	major_frequency=8.462e-01	minor_base=T	minor_cov=1/3	new_cov=15/7	polymorphism_frequency=8.462e-01	polymorphism_score=-0.5	prediction=consensus	ref_cov=1/3	total_cov=16/10
RA	1126	.	NC_000913	17893	0	T	C	bias_e_value=3027860	bias_p_value=0.652323	consensus_score=73.1	fisher_strand_p_value=0.304116	frequency=1	ks_quality_p_value=0.96249	major_base=C	major_cov=16/11	major_frequency=8.710e-01	minor_base=T	minor_cov=1/3	new_cov=16/11	polymorphism_frequency=8.710e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=1/3	total_cov=18/14
RA	1127	.	NC_000913	17908	0	A	G	bias_e_value=2313330	bias_p_value=0.498385	consensus_score=76.8	fisher_strand_p_value=0.288196	frequency=1	ks_quality_p_value=0.644427	major_base=G	major_cov=18/11	major_frequency=8.788e-01	minor_base=A	minor_cov=1/3	new_cov=18/11	polymorphism_frequency=8.788e-01	polymorphism_score=1.7	prediction=consensus	ref_cov=1/3	total_cov=19/15
RA	1128	.	NC_000913	18093	0	C	T	bias_e_value=3314750	bias_p_value=0.714131	consensus_score=104.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.346864	major_base=T	major_cov=20/14	major_frequency=9.444e-01	minor_base=C	minor_cov=1/1	new_cov=20/14	polymorphism_frequency=9.444e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=21/15
RA	1129	.	NC_000913	18118	0	T	G	bias_e_value=3692800	bias_p_value=0.795579	consensus_score=106.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.43318	major_base=G	major_cov=20/14	major_frequency=9.444e-01	minor_base=T	minor_cov=1/1	new_cov=20/14	polymorphism_frequency=9.444e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=21/15
RA	1130	.	NC_000913	18127	0	G	A	bias_e_value=3861100	bias_p_value=0.831838	consensus_score=89.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.479364	major_base=A	major_cov=20/14	major_frequency=9.444e-01	minor_base=G	minor_cov=1/1	new_cov=20/14	polymorphism_frequency=9.444e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=1/1	total_cov=22/15
RA	1131	.	NC_000913	18169	0	T	C	bias_e_value=3413470	bias_p_value=0.735399	consensus_score=94.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.36752	major_base=C	major_cov=17/14	major_frequency=9.394e-01	minor_base=T	minor_cov=1/1	new_cov=17/14	polymorphism_frequency=9.394e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=19/15
RA	1132	.	NC_000913	18253	0	G	A	bias_e_value=3892340	bias_p_value=0.838567	consensus_score=83.0	fisher_strand_p_value=0.488636	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/15	major_frequency=9.394e-01	minor_base=G	minor_cov=2/0	new_cov=16/15	polymorphism_frequency=9.394e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=2/0	total_cov=18/17
RA	1133	.	NC_000913	18322	0	C	T	bias_e_value=3116720	bias_p_value=0.671468	consensus_score=69.5	fisher_strand_p_value=0.37037	frequency=1	ks_quality_p_value=0.833321	major_base=T	major_cov=9/17	major_frequency=9.630e-01	minor_base=G	minor_cov=1/0	new_cov=9/17	polymorphism_frequency=9.630e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=11/17
RA	1134	.	NC_000913	18477	0	T	C	bias_e_value=4597060	bias_p_value=0.990393	consensus_score=48.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.864629	major_base=C	major_cov=4/16	major_frequency=9.091e-01	minor_base=T	minor_cov=0/2	new_cov=4/16	polymorphism_frequency=9.091e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/2	total_cov=4/18
RA	1135	.	NC_000913	19014	0	C	T	bias_e_value=1701970	bias_p_value=0.366673	consensus_score=123.5	fisher_strand_p_value=0.418605	frequency=1	ks_quality_p_value=0.277988	major_base=T	major_cov=17/25	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=17/25	polymorphism_frequency=9.767e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=18/25
RA	1136	.	NC_000913	19398	0	T	G	bias_e_value=1861740	bias_p_value=0.401094	consensus_score=62.9	fisher_strand_p_value=0.478261	frequency=1	ks_quality_p_value=0.277862	major_base=G	major_cov=12/10	major_frequency=9.565e-01	minor_base=T	minor_cov=0/1	new_cov=12/10	polymorphism_frequency=9.565e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=12/11
RA	1137	.	NC_000913	19613	0	T	C	consensus_score=50.2	frequency=1	major_base=C	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1138	.	NC_000913	19627	0	G	C	bias_e_value=4616350	bias_p_value=0.99455	consensus_score=47.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.897426	major_base=C	major_cov=9/12	major_frequency=9.545e-01	minor_base=A	minor_cov=0/1	new_cov=9/12	polymorphism_frequency=9.545e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1139	.	NC_000913	19634	1	.	C	bias_e_value=3414280	bias_p_value=0.735574	consensus_score=57.1	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.919238	major_base=C	major_cov=7/12	major_frequency=9.500e-01	minor_base=.	minor_cov=1/0	new_cov=7/12	polymorphism_frequency=9.500e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=1/0	total_cov=8/12
RA	1140	.	NC_000913	19670	0	T	A	consensus_score=44.2	frequency=1	major_base=A	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	1141	.	NC_000913	19715	0	G	A	consensus_score=42.9	frequency=1	major_base=A	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	1142	.	NC_000913	20590	0	T	C	bias_e_value=4298860	bias_p_value=0.926149	consensus_score=15.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.64118	major_base=C	major_cov=5/3	major_frequency=8.889e-01	minor_base=T	minor_cov=1/0	new_cov=5/3	polymorphism_frequency=8.889e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=6/3
RA	1143	.	NC_000913	20600	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=22.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=5/4	major_frequency=9.000e-01	minor_base=G	minor_cov=1/0	new_cov=5/4	polymorphism_frequency=9.000e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=6/4
RA	1144	.	NC_000913	20605	0	A	.	bias_e_value=4641650	bias_p_value=1	consensus_score=29.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=5/4	major_frequency=9.000e-01	minor_base=A	minor_cov=1/0	new_cov=5/4	polymorphism_frequency=9.000e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/0	total_cov=6/4
RA	1145	.	NC_000913	21617	0	A	C	bias_e_value=4641420	bias_p_value=0.99995	consensus_score=73.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990039	major_base=C	major_cov=17/12	major_frequency=9.355e-01	minor_base=A	minor_cov=1/1	new_cov=17/12	polymorphism_frequency=9.355e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/1	total_cov=18/13
RA	1146	.	NC_000913	21619	0	A	G	bias_e_value=2707560	bias_p_value=0.583317	consensus_score=84.4	fisher_strand_p_value=0.433333	frequency=1	ks_quality_p_value=0.555156	major_base=G	major_cov=17/12	major_frequency=9.667e-01	minor_base=A	minor_cov=0/1	new_cov=17/12	polymorphism_frequency=9.667e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=18/13
RA	1147	.	NC_000913	21750	0	A	T	bias_e_value=4457450	bias_p_value=0.960315	consensus_score=106.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.731839	major_base=T	major_cov=15/25	major_frequency=9.756e-01	minor_base=A	minor_cov=0/1	new_cov=15/25	polymorphism_frequency=9.756e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=15/26
RA	1148	.	NC_000913	21895	0	C	T	bias_e_value=3455030	bias_p_value=0.744353	consensus_score=79.2	fisher_strand_p_value=0.392857	frequency=1	ks_quality_p_value=0.958555	major_base=T	major_cov=10/17	major_frequency=9.643e-01	minor_base=C	minor_cov=1/0	new_cov=10/17	polymorphism_frequency=9.643e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=11/18
RA	1149	.	NC_000913	21910	0	C	T	bias_e_value=2661430	bias_p_value=0.573379	consensus_score=88.3	fisher_strand_p_value=0.366667	frequency=1	ks_quality_p_value=0.637262	major_base=T	major_cov=10/19	major_frequency=9.667e-01	minor_base=C	minor_cov=1/0	new_cov=10/19	polymorphism_frequency=9.667e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=11/19
RA	1150	.	NC_000913	21922	0	C	G	bias_e_value=2227750	bias_p_value=0.479948	consensus_score=66.4	fisher_strand_p_value=0.384615	frequency=1	ks_quality_p_value=0.454893	major_base=G	major_cov=9/16	major_frequency=9.615e-01	minor_base=C	minor_cov=1/0	new_cov=9/16	polymorphism_frequency=9.615e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=10/16
RA	1151	.	NC_000913	21925	0	T	G	bias_e_value=3470080	bias_p_value=0.747595	consensus_score=75.3	fisher_strand_p_value=0.384615	frequency=1	ks_quality_p_value=0.987768	major_base=G	major_cov=9/16	major_frequency=9.615e-01	minor_base=T	minor_cov=1/0	new_cov=9/16	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=10/16
RA	1152	.	NC_000913	21952	0	G	A	bias_e_value=1812980	bias_p_value=0.390588	consensus_score=67.3	fisher_strand_p_value=0.346154	frequency=1	ks_quality_p_value=0.369013	major_base=A	major_cov=8/17	major_frequency=9.615e-01	minor_base=G	minor_cov=1/0	new_cov=8/17	polymorphism_frequency=9.615e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=9/17
RA	1153	.	NC_000913	22048	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=93.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=9/24	major_frequency=9.167e-01	minor_base=G	minor_cov=1/2	new_cov=9/24	polymorphism_frequency=9.167e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/2	total_cov=10/28
RA	1154	.	NC_000913	22373	0	T	C	bias_e_value=1111320	bias_p_value=0.239424	consensus_score=112.5	fisher_strand_p_value=0.447368	frequency=1	ks_quality_p_value=0.142649	major_base=C	major_cov=21/16	major_frequency=9.737e-01	minor_base=T	minor_cov=0/1	new_cov=21/16	polymorphism_frequency=9.737e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=21/17
RA	1155	.	NC_000913	22468	0	C	G	bias_e_value=4641650	bias_p_value=1	consensus_score=124.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=24/15	major_frequency=9.750e-01	minor_base=C	minor_cov=1/0	new_cov=24/15	polymorphism_frequency=9.750e-01	polymorphism_score=-6.8	prediction=consensus	ref_cov=1/0	total_cov=25/15
RA	1156	.	NC_000913	22942	0	A	G	bias_e_value=1886560	bias_p_value=0.406442	consensus_score=136.6	fisher_strand_p_value=0.235294	frequency=1	ks_quality_p_value=0.576102	major_base=G	major_cov=23/25	major_frequency=9.412e-01	minor_base=A	minor_cov=3/0	new_cov=23/25	polymorphism_frequency=9.412e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=3/0	total_cov=26/26
RA	1157	.	NC_000913	22945	0	T	A	bias_e_value=2631410	bias_p_value=0.566913	consensus_score=135.3	fisher_strand_p_value=0.34974	frequency=1	ks_quality_p_value=0.65547	major_base=A	major_cov=22/25	major_frequency=9.216e-01	minor_base=T	minor_cov=3/1	new_cov=22/25	polymorphism_frequency=9.216e-01	polymorphism_score=3.4	prediction=consensus	ref_cov=3/1	total_cov=26/26
RA	1158	.	NC_000913	23032	0	C	T	bias_e_value=3619570	bias_p_value=0.779801	consensus_score=115.1	fisher_strand_p_value=0.418917	frequency=1	ks_quality_p_value=0.990159	major_base=T	major_cov=24/21	major_frequency=8.654e-01	minor_base=C	minor_cov=2/5	new_cov=24/21	polymorphism_frequency=8.654e-01	polymorphism_score=7.0	prediction=consensus	ref_cov=2/5	total_cov=26/26
RA	1159	.	NC_000913	23038	0	A	G	bias_e_value=1334380	bias_p_value=0.28748	consensus_score=132.5	fisher_strand_p_value=0.196639	frequency=1	ks_quality_p_value=0.417811	major_base=G	major_cov=25/24	major_frequency=8.909e-01	minor_base=A	minor_cov=1/5	new_cov=25/24	polymorphism_frequency=8.909e-01	polymorphism_score=7.2	prediction=consensus	ref_cov=1/5	total_cov=26/29
RA	1160	.	NC_000913	23104	0	A	G	bias_e_value=2817000	bias_p_value=0.606895	consensus_score=120.5	fisher_strand_p_value=0.45668	frequency=1	ks_quality_p_value=0.56391	major_base=G	major_cov=27/22	major_frequency=8.596e-01	minor_base=A	minor_cov=3/5	new_cov=27/22	polymorphism_frequency=8.596e-01	polymorphism_score=8.4	prediction=consensus	ref_cov=3/5	total_cov=31/28
RA	1161	.	NC_000913	23116	0	C	T	bias_e_value=2420890	bias_p_value=0.521557	consensus_score=135.6	fisher_strand_p_value=0.233186	frequency=1	ks_quality_p_value=0.856805	major_base=T	major_cov=29/22	major_frequency=8.793e-01	minor_base=C	minor_cov=2/5	new_cov=29/22	polymorphism_frequency=8.793e-01	polymorphism_score=7.3	prediction=consensus	ref_cov=2/5	total_cov=31/27
RA	1162	.	NC_000913	23137	0	C	G	bias_e_value=2104110	bias_p_value=0.45331	consensus_score=140.7	fisher_strand_p_value=0.236303	frequency=1	ks_quality_p_value=0.677321	major_base=G	major_cov=27/21	major_frequency=8.727e-01	minor_base=C	minor_cov=2/5	new_cov=27/21	polymorphism_frequency=8.727e-01	polymorphism_score=14.5	prediction=consensus	ref_cov=2/5	total_cov=29/26
RA	1163	.	NC_000913	23161	0	A	T	bias_e_value=3215720	bias_p_value=0.692797	consensus_score=113.8	fisher_strand_p_value=0.470447	frequency=1	ks_quality_p_value=0.695612	major_base=T	major_cov=23/22	major_frequency=8.333e-01	minor_base=A	minor_cov=3/6	new_cov=23/22	polymorphism_frequency=8.333e-01	polymorphism_score=15.9	prediction=consensus	ref_cov=3/6	total_cov=26/28
RA	1164	.	NC_000913	23270	0	G	A	bias_e_value=2393520	bias_p_value=0.51566	consensus_score=106.2	fisher_strand_p_value=0.196154	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/22	major_frequency=9.500e-01	minor_base=G	minor_cov=2/0	new_cov=16/22	polymorphism_frequency=9.500e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=2/0	total_cov=20/22
RA	1165	.	NC_000913	23297	0	C	T	bias_e_value=4013230	bias_p_value=0.864613	consensus_score=84.0	fisher_strand_p_value=0.602597	frequency=1	ks_quality_p_value=0.874653	major_base=T	major_cov=15/17	major_frequency=9.143e-01	minor_base=C	minor_cov=2/1	new_cov=15/17	polymorphism_frequency=9.143e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=2/1	total_cov=19/20
RA	1166	.	NC_000913	23803	0	T	C	bias_e_value=2105410	bias_p_value=0.453591	consensus_score=142.6	fisher_strand_p_value=0.20202	frequency=1	ks_quality_p_value=0.793022	major_base=C	major_cov=23/30	major_frequency=9.636e-01	minor_base=T	minor_cov=2/0	new_cov=23/30	polymorphism_frequency=9.636e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=2/0	total_cov=27/30
RA	1167	.	NC_000913	23860	0	T	C	bias_e_value=1919540	bias_p_value=0.413547	consensus_score=151.8	fisher_strand_p_value=0.576213	frequency=1	ks_quality_p_value=0.24146	major_base=C	major_cov=23/31	major_frequency=9.474e-01	minor_base=T	minor_cov=2/1	new_cov=23/31	polymorphism_frequency=9.474e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=2/1	total_cov=25/32
RA	1168	.	NC_000913	23896	0	C	T	bias_e_value=4639930	bias_p_value=0.99963	consensus_score=144.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.972922	major_base=T	major_cov=21/30	major_frequency=9.107e-01	minor_base=C	minor_cov=2/3	new_cov=21/30	polymorphism_frequency=9.107e-01	polymorphism_score=3.4	prediction=consensus	ref_cov=2/3	total_cov=23/34
RA	1169	.	NC_000913	23897	0	G	A	bias_e_value=4592850	bias_p_value=0.989486	consensus_score=142.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.858541	major_base=A	major_cov=20/31	major_frequency=9.107e-01	minor_base=G	minor_cov=2/3	new_cov=20/31	polymorphism_frequency=9.107e-01	polymorphism_score=3.4	prediction=consensus	ref_cov=2/3	total_cov=23/34
RA	1170	.	NC_000913	23899	0	T	C	bias_e_value=2915930	bias_p_value=0.62821	consensus_score=137.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.2736	major_base=C	major_cov=21/31	major_frequency=9.123e-01	minor_base=T	minor_cov=2/3	new_cov=21/31	polymorphism_frequency=9.123e-01	polymorphism_score=4.8	prediction=consensus	ref_cov=2/3	total_cov=23/34
RA	1171	.	NC_000913	23956	0	T	C	bias_e_value=4602780	bias_p_value=0.991625	consensus_score=156.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.873399	major_base=C	major_cov=22/34	major_frequency=9.180e-01	minor_base=T	minor_cov=2/3	new_cov=22/34	polymorphism_frequency=9.180e-01	polymorphism_score=3.0	prediction=consensus	ref_cov=2/3	total_cov=27/37
RA	1172	.	NC_000913	23962	0	C	T	bias_e_value=4369720	bias_p_value=0.941415	consensus_score=158.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.677842	major_base=T	major_cov=25/32	major_frequency=9.344e-01	minor_base=C	minor_cov=2/2	new_cov=25/32	polymorphism_frequency=9.344e-01	polymorphism_score=2.4	prediction=consensus	ref_cov=2/2	total_cov=27/35
RA	1173	.	NC_000913	23977	0	C	T	bias_e_value=3947800	bias_p_value=0.850517	consensus_score=123.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.505737	major_base=T	major_cov=22/24	major_frequency=9.200e-01	minor_base=C	minor_cov=2/2	new_cov=22/24	polymorphism_frequency=9.200e-01	polymorphism_score=2.3	prediction=consensus	ref_cov=2/2	total_cov=26/28
RA	1174	.	NC_000913	23980	0	A	T	bias_e_value=4377010	bias_p_value=0.942986	consensus_score=131.4	fisher_strand_p_value=0.699408	frequency=1	ks_quality_p_value=0.974989	major_base=T	major_cov=22/25	major_frequency=8.704e-01	minor_base=A	minor_cov=4/3	new_cov=22/25	polymorphism_frequency=8.704e-01	polymorphism_score=6.5	prediction=consensus	ref_cov=4/3	total_cov=26/28
RA	1175	.	NC_000913	23981	0	T	C	bias_e_value=4612860	bias_p_value=0.993797	consensus_score=130.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.890706	major_base=C	major_cov=23/25	major_frequency=8.889e-01	minor_base=T	minor_cov=3/3	new_cov=23/25	polymorphism_frequency=8.889e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=3/3	total_cov=26/28
RA	1176	.	NC_000913	23983	0	G	C	bias_e_value=3712230	bias_p_value=0.799764	consensus_score=123.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.438217	major_base=C	major_cov=23/24	major_frequency=9.038e-01	minor_base=G	minor_cov=2/3	new_cov=23/24	polymorphism_frequency=9.038e-01	polymorphism_score=7.7	prediction=consensus	ref_cov=2/3	total_cov=26/28
RA	1177	.	NC_000913	23986	0	T	C	bias_e_value=412201	bias_p_value=0.0888049	consensus_score=125.6	fisher_strand_p_value=0.620851	frequency=1	ks_quality_p_value=0.0283894	major_base=C	major_cov=21/25	major_frequency=9.200e-01	minor_base=T	minor_cov=1/3	new_cov=21/25	polymorphism_frequency=9.200e-01	polymorphism_score=2.1	prediction=consensus	ref_cov=1/3	total_cov=26/28
RA	1178	.	NC_000913	24085	0	A	G	bias_e_value=4496950	bias_p_value=0.968825	consensus_score=123.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.760924	major_base=G	major_cov=21/28	major_frequency=8.909e-01	minor_base=A	minor_cov=3/3	new_cov=21/28	polymorphism_frequency=8.909e-01	polymorphism_score=5.5	prediction=consensus	ref_cov=3/3	total_cov=24/31
RA	1179	.	NC_000913	24091	0	C	T	bias_e_value=2722790	bias_p_value=0.586599	consensus_score=122.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.242879	major_base=T	major_cov=20/25	major_frequency=9.184e-01	minor_base=C	minor_cov=2/2	new_cov=20/25	polymorphism_frequency=9.184e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=2/2	total_cov=23/30
RA	1180	.	NC_000913	24094	0	C	T	bias_e_value=4383970	bias_p_value=0.944484	consensus_score=124.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.685857	major_base=T	major_cov=20/27	major_frequency=9.038e-01	minor_base=C	minor_cov=2/3	new_cov=20/27	polymorphism_frequency=9.038e-01	polymorphism_score=4.6	prediction=consensus	ref_cov=2/3	total_cov=23/30
RA	1181	.	NC_000913	24133	0	G	A	bias_e_value=2633770	bias_p_value=0.567422	consensus_score=133.2	fisher_strand_p_value=0.469388	frequency=1	ks_quality_p_value=0.489126	major_base=A	major_cov=22/26	major_frequency=9.796e-01	minor_base=G	minor_cov=1/0	new_cov=22/26	polymorphism_frequency=9.796e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=23/28
RA	1182	.	NC_000913	24136	0	T	C	bias_e_value=2995340	bias_p_value=0.645318	consensus_score=146.0	fisher_strand_p_value=0.45098	frequency=1	ks_quality_p_value=0.636504	major_base=C	major_cov=22/28	major_frequency=9.804e-01	minor_base=T	minor_cov=1/0	new_cov=22/28	polymorphism_frequency=9.804e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=23/28
RA	1183	.	NC_000913	24217	0	T	C	bias_e_value=2224800	bias_p_value=0.479313	consensus_score=125.8	fisher_strand_p_value=0.348837	frequency=1	ks_quality_p_value=0.500505	major_base=C	major_cov=14/28	major_frequency=9.767e-01	minor_base=T	minor_cov=1/0	new_cov=14/28	polymorphism_frequency=9.767e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=16/28
RA	1184	.	NC_000913	24340	0	T	C	bias_e_value=4472660	bias_p_value=0.963591	consensus_score=165.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.742584	major_base=C	major_cov=21/33	major_frequency=9.643e-01	minor_base=T	minor_cov=1/1	new_cov=21/33	polymorphism_frequency=9.643e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=1/1	total_cov=22/35
RA	1185	.	NC_000913	24616	0	T	C	bias_e_value=3460630	bias_p_value=0.745561	consensus_score=120.5	fisher_strand_p_value=0.554757	frequency=1	ks_quality_p_value=0.681045	major_base=C	major_cov=16/26	major_frequency=9.333e-01	minor_base=T	minor_cov=2/1	new_cov=16/26	polymorphism_frequency=9.333e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=2/1	total_cov=19/27
RA	1186	.	NC_000913	24646	0	A	G	bias_e_value=3678620	bias_p_value=0.792524	consensus_score=144.7	fisher_strand_p_value=0.602941	frequency=1	ks_quality_p_value=0.712419	major_base=G	major_cov=23/26	major_frequency=9.423e-01	minor_base=A	minor_cov=2/1	new_cov=23/26	polymorphism_frequency=9.423e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=2/1	total_cov=25/27
RA	1187	.	NC_000913	24670	0	G	T	bias_e_value=4271480	bias_p_value=0.920249	consensus_score=98.3	fisher_strand_p_value=0.642319	frequency=1	ks_quality_p_value=0.978023	major_base=T	major_cov=17/23	major_frequency=8.889e-01	minor_base=G	minor_cov=3/2	new_cov=17/23	polymorphism_frequency=8.889e-01	polymorphism_score=1.9	prediction=consensus	ref_cov=3/2	total_cov=23/25
RA	1188	.	NC_000913	24781	0	C	T	bias_e_value=3714440	bias_p_value=0.800242	consensus_score=86.5	fisher_strand_p_value=0.500891	frequency=1	ks_quality_p_value=0.876032	major_base=T	major_cov=14/18	major_frequency=9.412e-01	minor_base=C	minor_cov=0/2	new_cov=14/18	polymorphism_frequency=9.412e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/2	total_cov=15/20
RA	1189	.	NC_000913	24799	0	G	A	bias_e_value=4593560	bias_p_value=0.989639	consensus_score=99.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.859546	major_base=A	major_cov=12/23	major_frequency=9.459e-01	minor_base=G	minor_cov=0/2	new_cov=12/23	polymorphism_frequency=9.459e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=0/2	total_cov=13/25
RA	1190	.	NC_000913	24935	0	T	G	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=141.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996971	major_base=G	major_cov=16/27	major_frequency=9.348e-01	minor_base=T	minor_cov=1/2	new_cov=16/27	polymorphism_frequency=9.348e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=1/2	total_cov=18/29
RA	1191	.	NC_000913	24977	0	C	T	bias_e_value=4640100	bias_p_value=0.999665	consensus_score=121.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.974226	major_base=T	major_cov=19/25	major_frequency=9.362e-01	minor_base=C	minor_cov=1/2	new_cov=19/25	polymorphism_frequency=9.362e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/2	total_cov=20/27
RA	1192	.	NC_000913	25598	0	A	G	consensus_score=71.0	frequency=1	major_base=G	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	1193	.	NC_000913	25677	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=55.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=8/12	major_frequency=9.091e-01	minor_base=C	minor_cov=1/1	new_cov=8/12	polymorphism_frequency=9.091e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=11/13
RA	1194	.	NC_000913	25685	0	G	A	bias_e_value=3414150	bias_p_value=0.735546	consensus_score=56.6	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.808867	major_base=A	major_cov=9/12	major_frequency=9.545e-01	minor_base=G	minor_cov=1/0	new_cov=9/12	polymorphism_frequency=9.545e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=10/12
RA	1195	.	NC_000913	26534	0	T	C	bias_e_value=3375340	bias_p_value=0.727185	consensus_score=103.8	fisher_strand_p_value=0.506388	frequency=1	ks_quality_p_value=0.70974	major_base=C	major_cov=23/17	major_frequency=9.524e-01	minor_base=T	minor_cov=2/0	new_cov=23/17	polymorphism_frequency=9.524e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=2/0	total_cov=25/17
RA	1196	.	NC_000913	26606	0	T	C	bias_e_value=4602370	bias_p_value=0.991536	consensus_score=122.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.872746	major_base=C	major_cov=25/20	major_frequency=9.375e-01	minor_base=T	minor_cov=2/1	new_cov=25/20	polymorphism_frequency=9.375e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=2/1	total_cov=28/21
RA	1197	.	NC_000913	26609	0	C	T	bias_e_value=4265290	bias_p_value=0.918916	consensus_score=132.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.62535	major_base=T	major_cov=26/19	major_frequency=9.375e-01	minor_base=C	minor_cov=2/1	new_cov=26/19	polymorphism_frequency=9.375e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=2/1	total_cov=28/21
RA	1198	.	NC_000913	26621	0	A	G	bias_e_value=3553630	bias_p_value=0.765596	consensus_score=136.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.398997	major_base=G	major_cov=25/22	major_frequency=9.592e-01	minor_base=A	minor_cov=1/1	new_cov=25/22	polymorphism_frequency=9.592e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/1	total_cov=26/23
RA	1199	.	NC_000913	26624	0	T	G	bias_e_value=4590250	bias_p_value=0.988926	consensus_score=142.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.854916	major_base=G	major_cov=25/22	major_frequency=9.592e-01	minor_base=T	minor_cov=1/1	new_cov=25/22	polymorphism_frequency=9.592e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/1	total_cov=26/23
RA	1200	.	NC_000913	26636	0	T	C	bias_e_value=3131420	bias_p_value=0.674634	consensus_score=132.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.311341	major_base=C	major_cov=26/23	major_frequency=9.608e-01	minor_base=T	minor_cov=1/1	new_cov=26/23	polymorphism_frequency=9.608e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=27/24
RA	1201	.	NC_000913	26648	0	C	T	bias_e_value=3486260	bias_p_value=0.751083	consensus_score=137.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.383532	major_base=T	major_cov=25/21	major_frequency=9.583e-01	minor_base=C	minor_cov=1/1	new_cov=25/21	polymorphism_frequency=9.583e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=26/23
RA	1202	.	NC_000913	26663	0	G	T	bias_e_value=3610820	bias_p_value=0.777917	consensus_score=123.3	fisher_strand_p_value=0.580873	frequency=1	ks_quality_p_value=0.710412	major_base=T	major_cov=26/20	major_frequency=9.388e-01	minor_base=G	minor_cov=1/2	new_cov=26/20	polymorphism_frequency=9.388e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/2	total_cov=27/22
RA	1203	.	NC_000913	26666	0	A	G	bias_e_value=4260630	bias_p_value=0.917911	consensus_score=147.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.623216	major_base=G	major_cov=26/21	major_frequency=9.592e-01	minor_base=A	minor_cov=1/1	new_cov=26/21	polymorphism_frequency=9.592e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/1	total_cov=27/22
RA	1204	.	NC_000913	27026	0	C	T	bias_e_value=3489350	bias_p_value=0.751748	consensus_score=113.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.384227	major_base=T	major_cov=15/29	major_frequency=9.565e-01	minor_base=C	minor_cov=1/1	new_cov=15/29	polymorphism_frequency=9.565e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=16/30
RA	1205	.	NC_000913	27104	0	G	A	bias_e_value=1030830	bias_p_value=0.222082	consensus_score=119.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.0576275	major_base=A	major_cov=15/29	major_frequency=9.565e-01	minor_base=G	minor_cov=1/1	new_cov=15/29	polymorphism_frequency=9.565e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/1	total_cov=16/30
RA	1206	.	NC_000913	27367	0	A	C	bias_e_value=4588150	bias_p_value=0.988473	consensus_score=106.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.852059	major_base=C	major_cov=19/20	major_frequency=9.512e-01	minor_base=A	minor_cov=1/1	new_cov=19/20	polymorphism_frequency=9.512e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/1	total_cov=20/22
RA	1207	.	NC_000913	45950	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=109.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998651	major_base=A	major_cov=19/19	major_frequency=9.744e-01	minor_base=G	minor_cov=0/1	new_cov=19/19	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=19/21
RA	1208	.	NC_000913	45978	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=106.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/19	major_frequency=9.750e-01	minor_base=G	minor_cov=0/1	new_cov=20/19	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/21
RA	1209	.	NC_000913	46028	0	T	C	bias_e_value=2470330	bias_p_value=0.532209	consensus_score=111.0	fisher_strand_p_value=0.206478	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=16/21	major_frequency=9.487e-01	minor_base=A	minor_cov=2/0	new_cov=16/21	polymorphism_frequency=9.487e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=19/21
RA	1210	.	NC_000913	46247	0	T	C	bias_e_value=1146700	bias_p_value=0.247046	consensus_score=71.1	fisher_strand_p_value=0.484127	frequency=1	ks_quality_p_value=0.137585	major_base=C	major_cov=13/13	major_frequency=9.286e-01	minor_base=T	minor_cov=2/0	new_cov=13/13	polymorphism_frequency=9.286e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=2/0	total_cov=15/13
RA	1211	.	NC_000913	46253	0	G	C	bias_e_value=2145110	bias_p_value=0.462144	consensus_score=64.0	fisher_strand_p_value=0.484127	frequency=1	ks_quality_p_value=0.340642	major_base=C	major_cov=13/13	major_frequency=9.286e-01	minor_base=G	minor_cov=2/0	new_cov=13/13	polymorphism_frequency=9.286e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=2/0	total_cov=15/14
RA	1212	.	NC_000913	46277	0	T	C	bias_e_value=4607080	bias_p_value=0.992551	consensus_score=65.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.880451	major_base=C	major_cov=14/12	major_frequency=8.966e-01	minor_base=T	minor_cov=2/1	new_cov=14/12	polymorphism_frequency=8.966e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=2/1	total_cov=16/13
RA	1213	.	NC_000913	46448	0	C	A	bias_e_value=3277600	bias_p_value=0.706127	consensus_score=55.5	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.79189	major_base=A	major_cov=12/8	major_frequency=9.524e-01	minor_base=C	minor_cov=0/1	new_cov=12/8	polymorphism_frequency=9.524e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/1	total_cov=12/9
RA	1214	.	NC_000913	46634	0	G	T	bias_e_value=3116610	bias_p_value=0.671445	consensus_score=53.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.308618	major_base=T	major_cov=13/10	major_frequency=9.200e-01	minor_base=G	minor_cov=1/1	new_cov=13/10	polymorphism_frequency=9.200e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=1/1	total_cov=14/11
RA	1215	.	NC_000913	46652	0	A	G	bias_e_value=4012310	bias_p_value=0.864413	consensus_score=59.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.526752	major_base=G	major_cov=13/11	major_frequency=9.231e-01	minor_base=A	minor_cov=1/1	new_cov=13/11	polymorphism_frequency=9.231e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=14/13
RA	1216	.	NC_000913	46655	0	A	G	bias_e_value=4595480	bias_p_value=0.990052	consensus_score=64.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.862303	major_base=G	major_cov=13/12	major_frequency=9.259e-01	minor_base=A	minor_cov=1/1	new_cov=13/12	polymorphism_frequency=9.259e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/1	total_cov=14/13
RA	1217	.	NC_000913	46661	0	T	C	bias_e_value=4587870	bias_p_value=0.988414	consensus_score=52.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.851688	major_base=C	major_cov=12/11	major_frequency=8.846e-01	minor_base=T	minor_cov=1/2	new_cov=12/11	polymorphism_frequency=8.846e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/2	total_cov=13/13
RA	1218	.	NC_000913	46790	0	A	G	bias_e_value=3435110	bias_p_value=0.740061	consensus_score=37.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.372207	major_base=G	major_cov=8/10	major_frequency=9.474e-01	minor_base=A	minor_cov=0/1	new_cov=8/10	polymorphism_frequency=9.474e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=8/11
RA	1219	.	NC_000913	46943	0	T	C	bias_e_value=2383300	bias_p_value=0.513459	consensus_score=51.5	fisher_strand_p_value=0.194805	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=8/12	major_frequency=9.091e-01	minor_base=A	minor_cov=2/0	new_cov=8/12	polymorphism_frequency=9.091e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=12/12
RA	1220	.	NC_000913	46976	0	A	G	bias_e_value=940536	bias_p_value=0.20263	consensus_score=45.4	fisher_strand_p_value=0.0902256	frequency=1	ks_quality_p_value=0.564718	major_base=G	major_cov=7/11	major_frequency=8.571e-01	minor_base=A	minor_cov=3/0	new_cov=7/11	polymorphism_frequency=8.571e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=3/0	total_cov=10/11
RA	1221	.	NC_000913	47099	0	G	A	bias_e_value=3512870	bias_p_value=0.756815	consensus_score=41.6	fisher_strand_p_value=0.586466	frequency=1	ks_quality_p_value=0.664254	major_base=A	major_cov=8/10	major_frequency=8.182e-01	minor_base=G	minor_cov=3/1	new_cov=8/10	polymorphism_frequency=8.182e-01	polymorphism_score=2.0	prediction=consensus	ref_cov=3/1	total_cov=12/11
RA	1222	.	NC_000913	47434	0	T	C	bias_e_value=1848350	bias_p_value=0.398209	consensus_score=105.7	fisher_strand_p_value=0.134615	frequency=1	ks_quality_p_value=0.976594	major_base=C	major_cov=25/13	major_frequency=9.500e-01	minor_base=T	minor_cov=0/2	new_cov=25/13	polymorphism_frequency=9.500e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/2	total_cov=26/15
RA	1223	.	NC_000913	48033	0	T	G	bias_e_value=1947860	bias_p_value=0.419648	consensus_score=112.3	fisher_strand_p_value=0.41402	frequency=1	ks_quality_p_value=0.343566	major_base=G	major_cov=21/18	major_frequency=8.667e-01	minor_base=T	minor_cov=2/4	new_cov=21/18	polymorphism_frequency=8.667e-01	polymorphism_score=6.8	prediction=consensus	ref_cov=2/4	total_cov=23/22
RA	1224	.	NC_000913	66635	0	C	T	bias_e_value=4298410	bias_p_value=0.926052	consensus_score=95.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.64096	major_base=T	major_cov=14/21	major_frequency=9.459e-01	minor_base=C	minor_cov=1/1	new_cov=14/21	polymorphism_frequency=9.459e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=16/22
RA	1225	.	NC_000913	71170	0	T	C	bias_e_value=3813960	bias_p_value=0.821681	consensus_score=69.3	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.970446	major_base=C	major_cov=11/13	major_frequency=9.600e-01	minor_base=A	minor_cov=1/0	new_cov=11/13	polymorphism_frequency=9.600e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/1	total_cov=12/14
RA	1226	.	NC_000913	81102	0	G	A	consensus_score=59.3	frequency=1	major_base=A	major_cov=7/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	1227	.	NC_000913	154182	0	C	T	bias_e_value=2175820	bias_p_value=0.468759	consensus_score=21.5	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=0.365316	major_base=T	major_cov=6/5	major_frequency=8.462e-01	minor_base=C	minor_cov=0/2	new_cov=6/5	polymorphism_frequency=8.462e-01	polymorphism_score=-0.6	prediction=consensus	ref_cov=0/2	total_cov=6/7
RA	1228	.	NC_000913	156068	0	A	G	bias_e_value=3841560	bias_p_value=0.827628	consensus_score=49.9	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=8/10	major_frequency=9.474e-01	minor_base=T	minor_cov=1/0	new_cov=8/10	polymorphism_frequency=9.474e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	1229	.	NC_000913	271817	0	G	A	bias_e_value=2422300	bias_p_value=0.521861	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.2	fisher_strand_p_value=0.785696	frequency=4.815e-01	ks_quality_p_value=0.25453	major_base=G	major_cov=13/15	major_frequency=5.185e-01	minor_base=A	minor_cov=14/12	new_cov=14/12	polymorphism_frequency=4.815e-01	polymorphism_score=61.9	prediction=polymorphism	ref_cov=13/15	total_cov=28/27
RA	1230	.	NC_000913	271822	0	G	A	bias_e_value=4513010	bias_p_value=0.972285	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.5	fisher_strand_p_value=0.789073	frequency=4.727e-01	ks_quality_p_value=0.980894	major_base=G	major_cov=14/15	major_frequency=5.273e-01	minor_base=A	minor_cov=14/12	new_cov=14/12	polymorphism_frequency=4.727e-01	polymorphism_score=62.6	prediction=polymorphism	ref_cov=14/15	total_cov=28/27
RA	1231	.	NC_000913	271834	0	C	T	bias_e_value=4183770	bias_p_value=0.901353	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.7	fisher_strand_p_value=1	frequency=4.615e-01	ks_quality_p_value=0.590095	major_base=C	major_cov=13/15	major_frequency=5.385e-01	minor_base=T	minor_cov=12/12	new_cov=12/12	polymorphism_frequency=4.615e-01	polymorphism_score=54.6	prediction=polymorphism	ref_cov=13/15	total_cov=25/27
RA	1232	.	NC_000913	271838	0	T	A	bias_e_value=4633980	bias_p_value=0.998348	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.4	fisher_strand_p_value=1	frequency=4.615e-01	ks_quality_p_value=0.943076	major_base=T	major_cov=13/15	major_frequency=5.385e-01	minor_base=A	minor_cov=12/12	new_cov=12/12	polymorphism_frequency=4.615e-01	polymorphism_score=65.5	prediction=polymorphism	ref_cov=13/15	total_cov=25/27
RA	1233	.	NC_000913	271876	0	A	G	bias_e_value=4182190	bias_p_value=0.901014	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.4	fisher_strand_p_value=0.77993	frequency=4.583e-01	ks_quality_p_value=0.755775	major_base=A	major_cov=13/13	major_frequency=5.417e-01	minor_base=G	minor_cov=10/12	new_cov=10/12	polymorphism_frequency=4.583e-01	polymorphism_score=59.1	prediction=polymorphism	ref_cov=13/13	total_cov=23/25
RA	1234	.	NC_000913	271901	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.8	fisher_strand_p_value=1	frequency=4.681e-01	ks_quality_p_value=1	major_base=G	major_cov=11/14	major_frequency=5.319e-01	minor_base=A	minor_cov=10/12	new_cov=10/12	polymorphism_frequency=4.681e-01	polymorphism_score=46.5	prediction=polymorphism	ref_cov=11/14	total_cov=21/27
RA	1235	.	NC_000913	271943	0	A	G	bias_e_value=4143720	bias_p_value=0.892725	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.9	fisher_strand_p_value=0.751957	frequency=4.103e-01	ks_quality_p_value=0.763541	major_base=A	major_cov=10/13	major_frequency=5.897e-01	minor_base=G	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=4.103e-01	polymorphism_score=36.2	prediction=polymorphism	ref_cov=10/13	total_cov=18/21
RA	1236	.	NC_000913	271946	0	G	A	bias_e_value=2118850	bias_p_value=0.456486	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.1	fisher_strand_p_value=0.751957	frequency=4.103e-01	ks_quality_p_value=0.21516	major_base=G	major_cov=10/13	major_frequency=5.897e-01	minor_base=A	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=4.103e-01	polymorphism_score=37.5	prediction=polymorphism	ref_cov=10/13	total_cov=18/21
RA	1237	.	NC_000913	271964	0	C	T	bias_e_value=2884170	bias_p_value=0.621367	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.9	fisher_strand_p_value=0.729477	frequency=3.333e-01	ks_quality_p_value=0.367879	major_base=C	major_cov=10/14	major_frequency=6.667e-01	minor_base=T	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=3.333e-01	polymorphism_score=25.0	prediction=polymorphism	ref_cov=10/14	total_cov=17/20
RA	1238	.	NC_000913	271967	0	T	G	bias_e_value=2216860	bias_p_value=0.477602	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.7	fisher_strand_p_value=0.511886	frequency=3.514e-01	ks_quality_p_value=0.33917	major_base=T	major_cov=10/14	major_frequency=6.486e-01	minor_base=G	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=3.514e-01	polymorphism_score=28.0	prediction=polymorphism	ref_cov=10/14	total_cov=17/20
RA	1239	.	NC_000913	272002	0	A	G	bias_e_value=3708910	bias_p_value=0.799049	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.4	fisher_strand_p_value=0.690821	frequency=2.857e-01	ks_quality_p_value=0.63309	major_base=A	major_cov=8/12	major_frequency=7.143e-01	minor_base=G	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=2.857e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=8/12	total_cov=12/16
RA	1240	.	NC_000913	480295	0	G	A	consensus_score=38.8	frequency=1	major_base=A	major_cov=9/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	1241	.	NC_000913	480296	0	G	A	consensus_score=41.0	frequency=1	major_base=A	major_cov=9/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	1242	.	NC_000913	495622	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=72.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/14	major_frequency=8.788e-01	minor_base=C	minor_cov=2/2	new_cov=15/14	polymorphism_frequency=8.788e-01	polymorphism_score=1.8	prediction=consensus	ref_cov=2/2	total_cov=17/17
RA	1243	.	NC_000913	500988	0	C	T	bias_e_value=4641500	bias_p_value=0.999968	consensus_score=82.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991968	major_base=T	major_cov=12/19	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=12/19	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/20
RA	1244	.	NC_000913	514434	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=98.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/18	major_frequency=9.231e-01	minor_base=C	minor_cov=2/1	new_cov=18/18	polymorphism_frequency=9.231e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=2/1	total_cov=20/20
RA	1245	.	NC_000913	534742	0	G	A	bias_e_value=3672130	bias_p_value=0.791125	consensus_score=88.7	fisher_strand_p_value=0.606178	frequency=1	ks_quality_p_value=0.705889	major_base=A	major_cov=17/17	major_frequency=8.947e-01	minor_base=G	minor_cov=3/1	new_cov=17/17	polymorphism_frequency=8.947e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=3/1	total_cov=20/18
RA	1246	.	NC_000913	582597	0	C	T	consensus_score=28.0	frequency=1	major_base=T	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	1247	.	NC_000913	602835	0	G	A	bias_e_value=4561980	bias_p_value=0.982835	consensus_score=64.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.820532	major_base=A	major_cov=17/9	major_frequency=9.286e-01	minor_base=G	minor_cov=1/1	new_cov=17/9	polymorphism_frequency=9.286e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=18/11
RA	1248	.	NC_000913	674259	0	G	A	bias_e_value=3919550	bias_p_value=0.844429	consensus_score=65.7	fisher_strand_p_value=0.51567	frequency=1	ks_quality_p_value=0.96364	major_base=A	major_cov=15/10	major_frequency=9.259e-01	minor_base=G	minor_cov=2/0	new_cov=15/10	polymorphism_frequency=9.259e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=2/0	total_cov=17/10
RA	1249	.	NC_000913	677829	0	T	C	bias_e_value=820424	bias_p_value=0.176753	consensus_score=10.0	fisher_strand_p_value=0.0666667	frequency=1	ks_quality_p_value=0.637628	major_base=C	major_cov=1/7	major_frequency=8.000e-01	minor_base=T	minor_cov=2/0	new_cov=1/7	polymorphism_frequency=8.000e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=2/0	total_cov=3/7
RA	1250	.	NC_000913	694941	0	G	A	bias_e_value=3865200	bias_p_value=0.83272	consensus_score=109.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.480566	major_base=A	major_cov=19/22	major_frequency=9.111e-01	minor_base=G	minor_cov=2/2	new_cov=19/22	polymorphism_frequency=9.111e-01	polymorphism_score=2.8	prediction=consensus	ref_cov=2/2	total_cov=21/24
RA	1251	.	NC_000913	696470	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=65.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/16	major_frequency=9.600e-01	minor_base=G	minor_cov=0/1	new_cov=8/16	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/17
RA	1252	.	NC_000913	708774	0	G	A	bias_e_value=4314020	bias_p_value=0.929415	consensus_score=58.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.648625	major_base=A	major_cov=13/8	major_frequency=9.545e-01	minor_base=G	minor_cov=1/0	new_cov=13/8	polymorphism_frequency=9.545e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=14/9
RA	1253	.	NC_000913	721604	0	G	A	consensus_score=94.5	frequency=1	major_base=A	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	1254	.	NC_000913	780624	0	C	T	bias_e_value=2375200	bias_p_value=0.511714	consensus_score=61.2	fisher_strand_p_value=0.19374	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/9	major_frequency=8.125e-01	minor_base=C	minor_cov=2/4	new_cov=17/9	polymorphism_frequency=8.125e-01	polymorphism_score=3.1	prediction=consensus	ref_cov=2/4	total_cov=19/13
RA	1255	.	NC_000913	789580	0	C	A	bias_e_value=4641100	bias_p_value=0.999882	consensus_score=128.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98466	major_base=A	major_cov=24/21	major_frequency=9.783e-01	minor_base=C	minor_cov=1/0	new_cov=24/21	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=25/21
RA	1256	.	NC_000913	822527	0	C	T	consensus_score=56.2	frequency=1	major_base=T	major_cov=11/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/8
RA	1257	.	NC_000913	883396	0	C	T	bias_e_value=4597060	bias_p_value=0.990393	consensus_score=50.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.864629	major_base=T	major_cov=10/10	major_frequency=9.091e-01	minor_base=C	minor_cov=1/1	new_cov=10/10	polymorphism_frequency=9.091e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=1/1	total_cov=11/11
RA	1258	.	NC_000913	908169	0	C	T	bias_e_value=3616440	bias_p_value=0.779128	consensus_score=100.2	fisher_strand_p_value=0.416667	frequency=1	ks_quality_p_value=0.993671	major_base=T	major_cov=21/14	major_frequency=9.722e-01	minor_base=C	minor_cov=0/1	new_cov=21/14	polymorphism_frequency=9.722e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/1	total_cov=23/15
RA	1259	.	NC_000913	968252	0	G	A	bias_e_value=2829680	bias_p_value=0.609629	consensus_score=41.5	fisher_strand_p_value=0.447368	frequency=1	ks_quality_p_value=0.580164	major_base=A	major_cov=4/14	major_frequency=9.000e-01	minor_base=G	minor_cov=1/1	new_cov=4/14	polymorphism_frequency=9.000e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/1	total_cov=5/15
RA	1260	.	NC_000913	1054855	0	G	A	bias_e_value=4395210	bias_p_value=0.946906	consensus_score=86.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.692362	major_base=A	major_cov=10/22	major_frequency=9.412e-01	minor_base=G	minor_cov=0/2	new_cov=10/22	polymorphism_frequency=9.412e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=0/2	total_cov=11/24
RA	1261	.	NC_000913	1066699	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=84.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/15	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	1262	.	NC_000913	1075234	0	C	T	bias_e_value=154667	bias_p_value=0.0333214	consensus_score=91.1	fisher_strand_p_value=0.00534759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/4	major_frequency=9.143e-01	minor_base=C	minor_cov=0/3	new_cov=28/4	polymorphism_frequency=9.143e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/3	total_cov=30/7
RA	1263	.	NC_000913	1075528	0	C	T	bias_e_value=909432	bias_p_value=0.195929	consensus_score=88.4	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=0.10048	major_base=T	major_cov=15/17	major_frequency=9.412e-01	minor_base=C	minor_cov=2/0	new_cov=15/17	polymorphism_frequency=9.412e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=2/0	total_cov=17/17
RA	1264	.	NC_000913	1078268	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=62.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/14	major_frequency=9.583e-01	minor_base=G	minor_cov=0/1	new_cov=9/14	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	1265	.	NC_000913	1086153	0	C	T	consensus_score=49.2	frequency=1	major_base=T	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	1266	.	NC_000913	1090508	0	C	T	consensus_score=41.2	frequency=1	major_base=T	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	1267	.	NC_000913	1107209	0	C	T	consensus_score=79.6	frequency=1	major_base=T	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	1268	.	NC_000913	1109740	0	C	T	bias_e_value=3693400	bias_p_value=0.795707	consensus_score=73.2	fisher_strand_p_value=0.433333	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/12	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=17/12	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/13
RA	1269	.	NC_000913	1110033	0	G	A	bias_e_value=4518180	bias_p_value=0.9734	consensus_score=50.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.778398	major_base=A	major_cov=12/9	major_frequency=9.130e-01	minor_base=G	minor_cov=1/1	new_cov=12/9	polymorphism_frequency=9.130e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=13/10
RA	1270	.	NC_000913	1112209	0	C	T	bias_e_value=4640090	bias_p_value=0.999664	consensus_score=47.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.974195	major_base=T	major_cov=13/4	major_frequency=9.444e-01	minor_base=G	minor_cov=1/0	new_cov=13/4	polymorphism_frequency=9.444e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=14/4
RA	1271	.	NC_000913	1112421	0	C	T	consensus_score=76.7	frequency=1	major_base=T	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1272	.	NC_000913	1114389	0	C	T	consensus_score=91.9	frequency=1	major_base=T	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	1273	.	NC_000913	1115185	0	C	T	bias_e_value=3841560	bias_p_value=0.827628	consensus_score=40.1	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/8	major_frequency=8.947e-01	minor_base=G	minor_cov=0/2	new_cov=9/8	polymorphism_frequency=8.947e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	1274	.	NC_000913	1117707	0	G	A	bias_e_value=2913930	bias_p_value=0.627779	consensus_score=62.1	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.569308	major_base=A	major_cov=11/13	major_frequency=9.600e-01	minor_base=G	minor_cov=1/0	new_cov=11/13	polymorphism_frequency=9.600e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=12/14
RA	1275	.	NC_000913	1120111	0	G	A	bias_e_value=3816980	bias_p_value=0.822332	consensus_score=71.6	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/13	major_frequency=9.667e-01	minor_base=C	minor_cov=0/1	new_cov=16/13	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=16/15
RA	1276	.	NC_000913	1121547	0	G	A	bias_e_value=4448820	bias_p_value=0.958456	consensus_score=44.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.725959	major_base=A	major_cov=10/7	major_frequency=9.444e-01	minor_base=G	minor_cov=1/0	new_cov=10/7	polymorphism_frequency=9.444e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=11/7
RA	1277	.	NC_000913	1121762	0	G	A	bias_e_value=3987680	bias_p_value=0.859107	consensus_score=94.2	fisher_strand_p_value=0.525397	frequency=1	ks_quality_p_value=0.987013	major_base=A	major_cov=21/13	major_frequency=9.444e-01	minor_base=G	minor_cov=2/0	new_cov=21/13	polymorphism_frequency=9.444e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=2/0	total_cov=23/13
RA	1278	.	NC_000913	1123823	0	G	A	bias_e_value=3774800	bias_p_value=0.813244	consensus_score=52.2	fisher_strand_p_value=0.550395	frequency=1	ks_quality_p_value=0.826565	major_base=A	major_cov=8/13	major_frequency=8.750e-01	minor_base=G	minor_cov=2/1	new_cov=8/13	polymorphism_frequency=8.750e-01	polymorphism_score=-0.5	prediction=consensus	ref_cov=2/1	total_cov=10/14
RA	1279	.	NC_000913	1123824	0	T	G	bias_e_value=3919010	bias_p_value=0.844314	consensus_score=58.6	fisher_strand_p_value=0.515152	frequency=1	ks_quality_p_value=0.96429	major_base=G	major_cov=8/12	major_frequency=9.091e-01	minor_base=T	minor_cov=0/2	new_cov=8/12	polymorphism_frequency=9.091e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/2	total_cov=10/14
RA	1280	.	NC_000913	1126316	0	G	A	bias_e_value=4639060	bias_p_value=0.999442	consensus_score=56.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.966772	major_base=A	major_cov=13/12	major_frequency=8.621e-01	minor_base=G	minor_cov=2/2	new_cov=13/12	polymorphism_frequency=8.621e-01	polymorphism_score=1.4	prediction=consensus	ref_cov=2/2	total_cov=15/14
RA	1281	.	NC_000913	1126518	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=74.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/11	major_frequency=9.630e-01	minor_base=C	minor_cov=1/0	new_cov=15/11	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=16/11
RA	1282	.	NC_000913	1127334	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=78.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/9	major_frequency=9.355e-01	minor_base=G	minor_cov=1/1	new_cov=20/9	polymorphism_frequency=9.355e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=22/10
RA	1283	.	NC_000913	1127338	0	G	A	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=83.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997986	major_base=A	major_cov=21/10	major_frequency=9.688e-01	minor_base=C	minor_cov=1/0	new_cov=21/10	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/10
RA	1284	.	NC_000913	1129796	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=71.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/11	major_frequency=9.615e-01	minor_base=C	minor_cov=1/0	new_cov=14/11	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	1285	.	NC_000913	1130210	0	G	A	bias_e_value=4636610	bias_p_value=0.998913	consensus_score=42.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.953736	major_base=A	major_cov=12/7	major_frequency=9.500e-01	minor_base=C	minor_cov=1/0	new_cov=12/7	polymorphism_frequency=9.500e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/7
RA	1286	.	NC_000913	1130803	0	C	T	bias_e_value=3769380	bias_p_value=0.812078	consensus_score=49.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.453459	major_base=T	major_cov=8/9	major_frequency=9.444e-01	minor_base=C	minor_cov=0/1	new_cov=8/9	polymorphism_frequency=9.444e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=8/10
RA	1287	.	NC_000913	1133273	0	G	A	bias_e_value=4430620	bias_p_value=0.954534	consensus_score=46.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.714022	major_base=A	major_cov=12/7	major_frequency=9.500e-01	minor_base=G	minor_cov=1/0	new_cov=12/7	polymorphism_frequency=9.500e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=13/7
RA	1288	.	NC_000913	1134466	0	C	T	bias_e_value=4218030	bias_p_value=0.908734	consensus_score=49.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.604414	major_base=T	major_cov=7/15	major_frequency=8.462e-01	minor_base=C	minor_cov=1/3	new_cov=7/15	polymorphism_frequency=8.462e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=1/3	total_cov=8/19
RA	1289	.	NC_000913	1138152	0	C	T	bias_e_value=4538480	bias_p_value=0.977772	consensus_score=52.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.796703	major_base=T	major_cov=8/12	major_frequency=9.091e-01	minor_base=C	minor_cov=1/1	new_cov=8/12	polymorphism_frequency=9.091e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=1/1	total_cov=9/13
RA	1290	.	NC_000913	1138533	0	C	T	bias_e_value=2843470	bias_p_value=0.612599	consensus_score=41.8	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.588951	major_base=T	major_cov=10/7	major_frequency=9.444e-01	minor_base=C	minor_cov=0/1	new_cov=10/7	polymorphism_frequency=9.444e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=10/8
RA	1291	.	NC_000913	1138831	0	C	T	consensus_score=72.5	frequency=1	major_base=T	major_cov=17/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/11
RA	1292	.	NC_000913	1141865	0	G	A	bias_e_value=4583920	bias_p_value=0.987562	consensus_score=142.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.846482	major_base=A	major_cov=24/24	major_frequency=9.796e-01	minor_base=G	minor_cov=0/1	new_cov=24/24	polymorphism_frequency=9.796e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=24/25
RA	1293	.	NC_000913	1144974	0	C	T	consensus_score=51.8	frequency=1	major_base=T	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	1294	.	NC_000913	1146110	0	C	T	bias_e_value=2251160	bias_p_value=0.484991	consensus_score=55.5	fisher_strand_p_value=0.177866	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/13	major_frequency=9.130e-01	minor_base=A	minor_cov=2/0	new_cov=8/13	polymorphism_frequency=9.130e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=11/13
RA	1295	.	NC_000913	1146384	0	A	G	bias_e_value=4485510	bias_p_value=0.96636	consensus_score=70.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.752089	major_base=G	major_cov=12/14	major_frequency=9.630e-01	minor_base=A	minor_cov=0/1	new_cov=12/14	polymorphism_frequency=9.630e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=12/15
RA	1296	.	NC_000913	1147792	0	T	A	bias_e_value=3836980	bias_p_value=0.826641	consensus_score=59.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.472367	major_base=A	major_cov=12/12	major_frequency=8.889e-01	minor_base=T	minor_cov=1/2	new_cov=12/12	polymorphism_frequency=8.889e-01	polymorphism_score=2.5	prediction=consensus	ref_cov=1/2	total_cov=13/14
RA	1297	.	NC_000913	1161403	0	G	A	bias_e_value=4641600	bias_p_value=0.999989	consensus_score=49.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995249	major_base=A	major_cov=7/13	major_frequency=9.524e-01	minor_base=G	minor_cov=0/1	new_cov=7/13	polymorphism_frequency=9.524e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/1	total_cov=7/14
RA	1298	.	NC_000913	1169836	0	A	G	bias_e_value=4220190	bias_p_value=0.909201	consensus_score=72.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.605343	major_base=G	major_cov=18/12	major_frequency=8.824e-01	minor_base=A	minor_cov=2/2	new_cov=18/12	polymorphism_frequency=8.824e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=2/2	total_cov=20/14
RA	1299	.	NC_000913	1171417	0	G	A	bias_e_value=3644870	bias_p_value=0.785252	consensus_score=93.5	fisher_strand_p_value=0.424242	frequency=1	ks_quality_p_value=0.992453	major_base=A	major_cov=19/13	major_frequency=9.697e-01	minor_base=G	minor_cov=0/1	new_cov=19/13	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=20/14
RA	1300	.	NC_000913	1176602	0	C	T	bias_e_value=3016660	bias_p_value=0.64991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.4	fisher_strand_p_value=1	frequency=7.941e-01	ks_quality_p_value=0.290749	major_base=T	major_cov=14/13	major_frequency=7.941e-01	minor_base=C	minor_cov=4/3	new_cov=14/13	polymorphism_frequency=7.941e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=4/3	total_cov=19/16
RA	1301	.	NC_000913	1180126	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=89.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/17	major_frequency=9.688e-01	minor_base=T	minor_cov=0/1	new_cov=14/17	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	1302	.	NC_000913	1181995	0	G	A	consensus_score=34.3	frequency=1	major_base=A	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	1303	.	NC_000913	1189980	0	A	G	bias_e_value=3297050	bias_p_value=0.710318	consensus_score=51.9	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=0.720887	major_base=G	major_cov=11/9	major_frequency=9.091e-01	minor_base=A	minor_cov=0/2	new_cov=11/9	polymorphism_frequency=9.091e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/2	total_cov=11/11
RA	1304	.	NC_000913	1193141	0	G	A	bias_e_value=3527220	bias_p_value=0.759907	consensus_score=63.2	fisher_strand_p_value=0.392857	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=10/17	major_frequency=9.643e-01	minor_base=G	minor_cov=1/0	new_cov=10/17	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=11/17
RA	1305	.	NC_000913	1194922	0	G	A	consensus_score=12.1	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	1306	.	NC_000913	1201548	0	A	C	bias_e_value=4606100	bias_p_value=0.99234	consensus_score=52.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.87881	major_base=C	major_cov=10/9	major_frequency=8.636e-01	minor_base=.	minor_cov=2/1	new_cov=10/9	polymorphism_frequency=8.636e-01	polymorphism_score=3.9	prediction=consensus	ref_cov=0/2	total_cov=12/12
RA	1307	.	NC_000913	1201550	0	C	A	bias_e_value=4641010	bias_p_value=0.999863	consensus_score=53.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983471	major_base=A	major_cov=10/10	major_frequency=8.333e-01	minor_base=C	minor_cov=2/2	new_cov=10/10	polymorphism_frequency=8.333e-01	polymorphism_score=1.7	prediction=consensus	ref_cov=2/2	total_cov=12/12
RA	1308	.	NC_000913	1227656	0	G	A	consensus_score=45.9	frequency=1	major_base=A	major_cov=14/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	1309	.	NC_000913	1244908	0	C	T	bias_e_value=3823980	bias_p_value=0.823841	consensus_score=49.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.468652	major_base=T	major_cov=5/14	major_frequency=9.500e-01	minor_base=C	minor_cov=0/1	new_cov=5/14	polymorphism_frequency=9.500e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=5/16
RA	1310	.	NC_000913	1252059	0	C	T	bias_e_value=2548930	bias_p_value=0.549143	consensus_score=46.7	fisher_strand_p_value=0.217391	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/9	major_frequency=9.130e-01	minor_base=G	minor_cov=0/2	new_cov=12/9	polymorphism_frequency=9.130e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	1311	.	NC_000913	1252663	0	C	T	consensus_score=65.7	frequency=1	major_base=T	major_cov=14/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/8
RA	1312	.	NC_000913	1253002	0	C	T	consensus_score=45.6	frequency=1	major_base=T	major_cov=5/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/11
RA	1313	.	NC_000913	1282857	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=79.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/12	major_frequency=9.667e-01	minor_base=A	minor_cov=1/0	new_cov=17/12	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	1314	.	NC_000913	1306736	0	T	G	consensus_score=36.2	frequency=1	major_base=G	major_cov=10/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/5
RA	1315	.	NC_000913	1308684	0	T	C	bias_e_value=4639240	bias_p_value=0.99948	consensus_score=67.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.967917	major_base=C	major_cov=12/11	major_frequency=9.583e-01	minor_base=T	minor_cov=0/1	new_cov=12/11	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=12/12
RA	1316	.	NC_000913	1323798	0	G	A	bias_e_value=4112570	bias_p_value=0.886015	consensus_score=46.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.562279	major_base=A	major_cov=9/10	major_frequency=8.636e-01	minor_base=G	minor_cov=1/2	new_cov=9/10	polymorphism_frequency=8.636e-01	polymorphism_score=1.6	prediction=consensus	ref_cov=1/2	total_cov=10/12
RA	1317	.	NC_000913	1325054	0	G	A	bias_e_value=4364950	bias_p_value=0.940387	consensus_score=51.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.675213	major_base=A	major_cov=10/12	major_frequency=8.800e-01	minor_base=G	minor_cov=1/2	new_cov=10/12	polymorphism_frequency=8.800e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=1/2	total_cov=11/14
RA	1318	.	NC_000913	1331059	0	T	A	bias_e_value=4639240	bias_p_value=0.99948	consensus_score=61.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.967917	major_base=A	major_cov=16/7	major_frequency=9.583e-01	minor_base=C	minor_cov=1/0	new_cov=16/7	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=17/8
RA	1319	.	NC_000913	1331060	0	C	T	consensus_score=71.2	frequency=1	major_base=T	major_cov=17/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/8
RA	1320	.	NC_000913	1337394	0	A	G	bias_e_value=4144720	bias_p_value=0.892941	consensus_score=79.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.574539	major_base=G	major_cov=14/14	major_frequency=9.655e-01	minor_base=A	minor_cov=0/1	new_cov=14/14	polymorphism_frequency=9.655e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=14/15
RA	1321	.	NC_000913	1341542	0	G	A	bias_e_value=2548930	bias_p_value=0.549143	consensus_score=64.4	fisher_strand_p_value=0.217391	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=9/12	major_frequency=9.130e-01	minor_base=C	minor_cov=2/0	new_cov=9/12	polymorphism_frequency=9.130e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1322	.	NC_000913	1358859	0	T	C	consensus_score=73.6	frequency=1	major_base=C	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	1323	.	NC_000913	1375737	0	G	A	bias_e_value=4395210	bias_p_value=0.946906	consensus_score=87.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.692362	major_base=A	major_cov=13/19	major_frequency=9.412e-01	minor_base=G	minor_cov=1/1	new_cov=13/19	polymorphism_frequency=9.412e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/1	total_cov=14/21
RA	1324	.	NC_000913	1405758	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=64.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=9/12	major_frequency=9.545e-01	minor_base=C	minor_cov=0/1	new_cov=9/12	polymorphism_frequency=9.545e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1325	.	NC_000913	1490095	0	G	A	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=69.6	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/9	major_frequency=9.600e-01	minor_base=G	minor_cov=0/1	new_cov=15/9	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=16/10
RA	1326	.	NC_000913	1497385	0	T	C	bias_e_value=4175280	bias_p_value=0.899524	consensus_score=20.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.586646	major_base=C	major_cov=5/7	major_frequency=8.000e-01	minor_base=T	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=1.7	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1327	.	NC_000913	1497386	0	T	.	bias_e_value=3307340	bias_p_value=0.712535	consensus_score=34.8	fisher_strand_p_value=0.505495	frequency=1	ks_quality_p_value=0.68321	major_base=.	major_cov=5/7	major_frequency=8.571e-01	minor_base=T	minor_cov=0/2	new_cov=5/7	polymorphism_frequency=8.571e-01	polymorphism_score=3.9	prediction=consensus	ref_cov=0/2	total_cov=6/9
RA	1328	.	NC_000913	1497387	0	C	A	bias_e_value=3329210	bias_p_value=0.717248	consensus_score=32.4	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=0.720215	major_base=A	major_cov=6/7	major_frequency=8.667e-01	minor_base=C	minor_cov=0/2	new_cov=6/7	polymorphism_frequency=8.667e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=0/2	total_cov=6/9
RA	1329	.	NC_000913	1497388	0	T	A	bias_e_value=3669660	bias_p_value=0.790594	consensus_score=30.3	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=0.879673	major_base=A	major_cov=6/7	major_frequency=8.667e-01	minor_base=T	minor_cov=0/2	new_cov=6/7	polymorphism_frequency=8.667e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/2	total_cov=6/9
RA	1330	.	NC_000913	1629247	0	C	T	bias_e_value=3070090	bias_p_value=0.661423	consensus_score=67.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.300192	major_base=T	major_cov=12/12	major_frequency=9.600e-01	minor_base=C	minor_cov=1/0	new_cov=12/12	polymorphism_frequency=9.600e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=13/12
RA	1331	.	NC_000913	1643679	0	A	T	bias_e_value=4590810	bias_p_value=0.989047	consensus_score=61.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.855693	major_base=T	major_cov=11/10	major_frequency=9.545e-01	minor_base=A	minor_cov=1/0	new_cov=11/10	polymorphism_frequency=9.545e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=12/10
RA	1332	.	NC_000913	1652331	0	T	C	consensus_score=37.5	frequency=1	major_base=C	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	1333	.	NC_000913	1660102	0	C	T	consensus_score=55.8	frequency=1	major_base=T	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	1334	.	NC_000913	1667460	0	G	A	bias_e_value=3672400	bias_p_value=0.791183	consensus_score=64.3	fisher_strand_p_value=0.434783	frequency=1	ks_quality_p_value=0.984314	major_base=A	major_cov=9/13	major_frequency=9.565e-01	minor_base=T	minor_cov=1/0	new_cov=9/13	polymorphism_frequency=9.565e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	1335	.	NC_000913	1894839	0	T	C	bias_e_value=3236880	bias_p_value=0.697354	consensus_score=46.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.331352	major_base=C	major_cov=8/9	major_frequency=9.444e-01	minor_base=T	minor_cov=1/0	new_cov=8/9	polymorphism_frequency=9.444e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=9/9
RA	1336	.	NC_000913	2040433	0	C	A	bias_e_value=3723510	bias_p_value=0.802196	consensus_score=95.1	fisher_strand_p_value=0.441176	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/19	major_frequency=9.706e-01	minor_base=C	minor_cov=1/0	new_cov=14/19	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=15/20
RA	1337	.	NC_000913	2111259	0	G	.	consensus_score=57.3	frequency=1	major_base=.	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	1338	.	NC_000913	2173360	0	A	.	bias_e_value=138834	bias_p_value=0.0299104	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.9	fisher_strand_p_value=0.00688406	frequency=2.500e-01	ks_quality_p_value=0.68321	major_base=A	major_cov=13/8	major_frequency=7.500e-01	minor_base=.	minor_cov=0/7	new_cov=0/7	polymorphism_frequency=2.500e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=13/8	total_cov=13/15
RA	1339	.	NC_000913	2173363	0	C	.	bias_e_value=69223.4	bias_p_value=0.0149135	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.1	fisher_strand_p_value=0.00248447	frequency=7.143e-01	ks_quality_p_value=0.836464	major_base=.	major_cov=13/7	major_frequency=7.143e-01	minor_base=C	minor_cov=0/8	new_cov=13/7	polymorphism_frequency=7.143e-01	polymorphism_score=30.6	prediction=polymorphism	ref_cov=0/8	total_cov=13/15
RA	1340	.	NC_000913	2173364	0	C	.	bias_e_value=138834	bias_p_value=0.0299104	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.1	fisher_strand_p_value=0.00688406	frequency=7.500e-01	ks_quality_p_value=0.68321	major_base=.	major_cov=13/8	major_frequency=7.500e-01	minor_base=C	minor_cov=0/7	new_cov=13/8	polymorphism_frequency=7.500e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=0/7	total_cov=13/15
RA	1341	.	NC_000913	2173448	0	C	T	bias_e_value=2939160	bias_p_value=0.633214	consensus_score=89.5	fisher_strand_p_value=0.57423	frequency=1	ks_quality_p_value=0.483225	major_base=T	major_cov=19/14	major_frequency=9.167e-01	minor_base=C	minor_cov=1/2	new_cov=19/14	polymorphism_frequency=9.167e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=1/2	total_cov=20/16
RA	1342	.	NC_000913	2204395	0	T	A	bias_e_value=4606100	bias_p_value=0.99234	consensus_score=50.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.87881	major_base=A	major_cov=12/7	major_frequency=8.636e-01	minor_base=T	minor_cov=2/1	new_cov=12/7	polymorphism_frequency=8.636e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=2/1	total_cov=14/8
RA	1343	.	NC_000913	2348366	0	C	A	bias_e_value=4130590	bias_p_value=0.889897	consensus_score=68.1	fisher_strand_p_value=0.586207	frequency=1	ks_quality_p_value=0.970805	major_base=A	major_cov=12/15	major_frequency=9.000e-01	minor_base=C	minor_cov=2/1	new_cov=12/15	polymorphism_frequency=9.000e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=2/1	total_cov=14/16
RA	1344	.	NC_000913	2377835	0	G	A	bias_e_value=4745.76	bias_p_value=0.00102243	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.5	fisher_strand_p_value=0.000100152	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=18/4	major_frequency=6.667e-01	minor_base=A	minor_cov=1/10	new_cov=1/10	polymorphism_frequency=3.333e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=18/4	total_cov=19/14
RA	1345	.	NC_000913	2388753	0	G	A	bias_e_value=3447870	bias_p_value=0.742811	consensus_score=42.7	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=5/10	major_frequency=9.375e-01	minor_base=C	minor_cov=1/0	new_cov=5/10	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	1346	.	NC_000913	2512423	0	C	T	bias_e_value=3830780	bias_p_value=0.825304	consensus_score=42.1	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/7	major_frequency=9.412e-01	minor_base=C	minor_cov=0/1	new_cov=9/7	polymorphism_frequency=9.412e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=9/8
RA	1347	.	NC_000913	2512424	0	A	T	consensus_score=38.4	frequency=1	major_base=T	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	1348	.	NC_000913	2577937	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=55.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=14/10	major_frequency=8.276e-01	minor_base=T	minor_cov=3/2	new_cov=14/10	polymorphism_frequency=8.276e-01	polymorphism_score=2.3	prediction=consensus	ref_cov=3/2	total_cov=17/12
RA	1349	.	NC_000913	2582272	0	C	T	bias_e_value=3937830	bias_p_value=0.848368	consensus_score=60.6	fisher_strand_p_value=0.597701	frequency=1	ks_quality_p_value=0.840887	major_base=T	major_cov=14/12	major_frequency=8.966e-01	minor_base=C	minor_cov=1/2	new_cov=14/12	polymorphism_frequency=8.966e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/2	total_cov=15/16
RA	1350	.	NC_000913	2587112	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=73.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/14	major_frequency=9.000e-01	minor_base=G	minor_cov=2/1	new_cov=13/14	polymorphism_frequency=9.000e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=18/15
RA	1351	.	NC_000913	2600978	0	C	T	bias_e_value=2989100	bias_p_value=0.643973	consensus_score=68.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.285975	major_base=T	major_cov=14/13	major_frequency=9.000e-01	minor_base=C	minor_cov=1/2	new_cov=14/13	polymorphism_frequency=9.000e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/2	total_cov=15/15
RA	1352	.	NC_000913	2613763	0	G	A	bias_e_value=4098570	bias_p_value=0.882998	consensus_score=77.9	fisher_strand_p_value=0.557508	frequency=1	ks_quality_p_value=0.999232	major_base=A	major_cov=11/17	major_frequency=9.032e-01	minor_base=G	minor_cov=2/1	new_cov=11/17	polymorphism_frequency=9.032e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=2/1	total_cov=13/18
RA	1353	.	NC_000913	2623838	0	G	A	bias_e_value=2429200	bias_p_value=0.523348	consensus_score=93.0	fisher_strand_p_value=0.382353	frequency=1	ks_quality_p_value=0.525453	major_base=A	major_cov=12/21	major_frequency=9.706e-01	minor_base=G	minor_cov=1/0	new_cov=12/21	polymorphism_frequency=9.706e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=13/21
RA	1354	.	NC_000913	2632711	0	G	A	bias_e_value=3330100	bias_p_value=0.717438	consensus_score=107.6	fisher_strand_p_value=0.35	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=26/13	major_frequency=9.750e-01	minor_base=G	minor_cov=0/1	new_cov=26/13	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=26/14
RA	1355	.	NC_000913	2684686	0	A	C	bias_e_value=2927400	bias_p_value=0.630682	consensus_score=69.7	fisher_strand_p_value=0.502016	frequency=1	ks_quality_p_value=0.548812	major_base=C	major_cov=17/13	major_frequency=9.375e-01	minor_base=A	minor_cov=2/0	new_cov=17/13	polymorphism_frequency=9.375e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=2/0	total_cov=19/13
RA	1356	.	NC_000913	2722946	0	G	A	bias_e_value=2283080	bias_p_value=0.491868	consensus_score=73.5	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.424373	major_base=A	major_cov=11/16	major_frequency=9.643e-01	minor_base=G	minor_cov=1/0	new_cov=11/16	polymorphism_frequency=9.643e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=13/16
RA	1357	.	NC_000913	2774947	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=23.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=6/4	major_frequency=9.091e-01	minor_base=G	minor_cov=1/0	new_cov=6/4	polymorphism_frequency=9.091e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=1/0	total_cov=7/4
RA	1358	.	NC_000913	2778119	0	C	T	bias_e_value=3911580	bias_p_value=0.842712	consensus_score=55.9	fisher_strand_p_value=0.550395	frequency=1	ks_quality_p_value=0.898397	major_base=T	major_cov=13/8	major_frequency=8.750e-01	minor_base=C	minor_cov=1/2	new_cov=13/8	polymorphism_frequency=8.750e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/2	total_cov=16/10
RA	1359	.	NC_000913	2806897	0	C	A	bias_e_value=4641370	bias_p_value=0.999939	consensus_score=45.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98895	major_base=A	major_cov=3/15	major_frequency=9.000e-01	minor_base=C	minor_cov=0/2	new_cov=3/15	polymorphism_frequency=9.000e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/2	total_cov=4/17
RA	1360	.	NC_000913	2814595	0	C	T	bias_e_value=2676730	bias_p_value=0.576676	consensus_score=65.4	fisher_strand_p_value=0.595556	frequency=1	ks_quality_p_value=0.396164	major_base=T	major_cov=11/13	major_frequency=8.889e-01	minor_base=C	minor_cov=2/1	new_cov=11/13	polymorphism_frequency=8.889e-01	polymorphism_score=-0.6	prediction=consensus	ref_cov=2/1	total_cov=13/14
RA	1361	.	NC_000913	2849941	0	G	A	bias_e_value=2209300	bias_p_value=0.475973	consensus_score=70.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.172687	major_base=A	major_cov=16/15	major_frequency=8.611e-01	minor_base=G	minor_cov=3/2	new_cov=16/15	polymorphism_frequency=8.611e-01	polymorphism_score=6.5	prediction=consensus	ref_cov=3/2	total_cov=22/17
RA	1362	.	NC_000913	2851821	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=70.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=8/18	major_frequency=9.630e-01	minor_base=C	minor_cov=0/1	new_cov=8/18	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=8/20
RA	1363	.	NC_000913	2867455	0	G	A	consensus_score=95.4	frequency=1	major_base=A	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	1364	.	NC_000913	2880635	0	T	C	bias_e_value=3021300	bias_p_value=0.650911	consensus_score=66.2	fisher_strand_p_value=0.423077	frequency=1	ks_quality_p_value=0.689142	major_base=C	major_cov=15/10	major_frequency=9.615e-01	minor_base=T	minor_cov=0/1	new_cov=15/10	polymorphism_frequency=9.615e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=15/11
RA	1365	.	NC_000913	2881212	0	C	T	bias_e_value=4373540	bias_p_value=0.942237	consensus_score=53.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.679965	major_base=T	major_cov=8/12	major_frequency=9.524e-01	minor_base=C	minor_cov=0/1	new_cov=8/12	polymorphism_frequency=9.524e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=8/13
RA	1366	.	NC_000913	2883115	0	G	A	bias_e_value=3859680	bias_p_value=0.831531	consensus_score=45.9	fisher_strand_p_value=0.478947	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=9/9	major_frequency=9.000e-01	minor_base=G	minor_cov=2/0	new_cov=9/9	polymorphism_frequency=9.000e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=2/0	total_cov=11/9
RA	1367	.	NC_000913	2890626	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=80.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/8	major_frequency=9.375e-01	minor_base=G	minor_cov=2/0	new_cov=22/8	polymorphism_frequency=9.375e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=2/0	total_cov=25/8
RA	1368	.	NC_000913	2893219	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=97.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/15	major_frequency=9.444e-01	minor_base=C	minor_cov=1/1	new_cov=19/15	polymorphism_frequency=9.444e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=1/1	total_cov=20/16
RA	1369	.	NC_000913	2893647	0	C	T	bias_e_value=3549140	bias_p_value=0.764628	consensus_score=116.6	fisher_strand_p_value=0.488372	frequency=1	ks_quality_p_value=0.814839	major_base=T	major_cov=20/21	major_frequency=9.535e-01	minor_base=C	minor_cov=2/0	new_cov=20/21	polymorphism_frequency=9.535e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=2/0	total_cov=25/21
RA	1370	.	NC_000913	2894839	0	C	T	bias_e_value=4627350	bias_p_value=0.996918	consensus_score=73.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.922521	major_base=T	major_cov=18/13	major_frequency=8.611e-01	minor_base=C	minor_cov=3/2	new_cov=18/13	polymorphism_frequency=8.611e-01	polymorphism_score=4.1	prediction=consensus	ref_cov=3/2	total_cov=21/16
RA	1371	.	NC_000913	2916216	0	G	A	bias_e_value=4638590	bias_p_value=0.99934	consensus_score=83.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.963887	major_base=A	major_cov=19/10	major_frequency=9.667e-01	minor_base=G	minor_cov=1/0	new_cov=19/10	polymorphism_frequency=9.667e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=20/10
RA	1372	.	NC_000913	2926772	0	C	A	bias_e_value=3746830	bias_p_value=0.807219	consensus_score=105.5	fisher_strand_p_value=0.447368	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/21	major_frequency=9.737e-01	minor_base=C	minor_cov=1/0	new_cov=16/21	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=17/22
RA	1373	.	NC_000913	2934092	0	G	A	consensus_score=39.2	frequency=1	major_base=A	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	1374	.	NC_000913	3025601	0	T	.	bias_e_value=2851300	bias_p_value=0.614286	consensus_score=43.6	fisher_strand_p_value=0.35	frequency=1	ks_quality_p_value=0.751477	major_base=.	major_cov=2/12	major_frequency=8.750e-01	minor_base=T	minor_cov=1/1	new_cov=2/12	polymorphism_frequency=8.750e-01	polymorphism_score=4.6	prediction=consensus	ref_cov=1/1	total_cov=3/13
RA	1375	.	NC_000913	3070858	0	T	G	bias_e_value=2432280	bias_p_value=0.524011	consensus_score=137.8	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.452975	major_base=G	major_cov=25/19	major_frequency=9.778e-01	minor_base=T	minor_cov=0/1	new_cov=25/19	polymorphism_frequency=9.778e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=25/20
RA	1376	.	NC_000913	3096754	0	G	A	bias_e_value=4615860	bias_p_value=0.994444	consensus_score=109.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.896451	major_base=A	major_cov=20/18	major_frequency=9.744e-01	minor_base=G	minor_cov=1/0	new_cov=20/18	polymorphism_frequency=9.744e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/0	total_cov=22/18
RA	1377	.	NC_000913	3207549	0	G	.	bias_e_value=4641650	bias_p_value=1	consensus_score=145.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=21/17	major_frequency=9.268e-01	minor_base=G	minor_cov=2/1	new_cov=21/17	polymorphism_frequency=9.268e-01	polymorphism_score=3.4	prediction=consensus	ref_cov=2/1	total_cov=23/18
RA	1378	.	NC_000913	3256301	0	G	A	bias_e_value=3552260	bias_p_value=0.7653	consensus_score=73.1	fisher_strand_p_value=0.503448	frequency=1	ks_quality_p_value=0.79189	major_base=A	major_cov=12/16	major_frequency=9.333e-01	minor_base=G	minor_cov=0/2	new_cov=12/16	polymorphism_frequency=9.333e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=0/2	total_cov=12/18
RA	1379	.	NC_000913	3279276	0	C	G	bias_e_value=4641650	bias_p_value=1	consensus_score=80.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=14/14	major_frequency=9.032e-01	minor_base=T	minor_cov=1/2	new_cov=14/14	polymorphism_frequency=9.032e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=16/17
RA	1380	.	NC_000913	3296481	0	G	A	bias_e_value=4631820	bias_p_value=0.997881	consensus_score=132.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.935618	major_base=A	major_cov=18/28	major_frequency=9.388e-01	minor_base=G	minor_cov=1/2	new_cov=18/28	polymorphism_frequency=9.388e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/2	total_cov=19/31
RA	1381	.	NC_000913	3329743	0	G	T	bias_e_value=3912440	bias_p_value=0.842898	consensus_score=51.0	fisher_strand_p_value=0.494737	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/10	major_frequency=9.000e-01	minor_base=G	minor_cov=0/2	new_cov=8/10	polymorphism_frequency=9.000e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/2	total_cov=8/12
RA	1382	.	NC_000913	3364664	0	G	A	bias_e_value=3693400	bias_p_value=0.795707	consensus_score=86.7	fisher_strand_p_value=0.433333	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=12/17	major_frequency=9.667e-01	minor_base=C	minor_cov=1/0	new_cov=12/17	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	1383	.	NC_000913	3388041	0	T	G	bias_e_value=4553040	bias_p_value=0.980909	consensus_score=102.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.811069	major_base=G	major_cov=19/17	major_frequency=9.231e-01	minor_base=T	minor_cov=2/1	new_cov=19/17	polymorphism_frequency=9.231e-01	polymorphism_score=-0.5	prediction=consensus	ref_cov=2/1	total_cov=21/18
RA	1384	.	NC_000913	3400207	0	G	A	bias_e_value=1665330	bias_p_value=0.358779	consensus_score=99.5	fisher_strand_p_value=0.217639	frequency=1	ks_quality_p_value=0.517941	major_base=A	major_cov=16/20	major_frequency=9.474e-01	minor_base=G	minor_cov=2/0	new_cov=16/20	polymorphism_frequency=9.474e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=2/0	total_cov=19/20
RA	1385	.	NC_000913	3411689	0	G	T	bias_e_value=4626400	bias_p_value=0.996715	consensus_score=43.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.920044	major_base=T	major_cov=12/12	major_frequency=8.889e-01	minor_base=G	minor_cov=2/1	new_cov=12/12	polymorphism_frequency=8.889e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=2/1	total_cov=14/14
RA	1386	.	NC_000913	3433665	0	C	T	bias_e_value=3838250	bias_p_value=0.826916	consensus_score=84.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.472732	major_base=T	major_cov=21/13	major_frequency=8.947e-01	minor_base=C	minor_cov=2/2	new_cov=21/13	polymorphism_frequency=8.947e-01	polymorphism_score=3.5	prediction=consensus	ref_cov=2/2	total_cov=23/15
RA	1387	.	NC_000913	3433900	0	C	T	bias_e_value=2783100	bias_p_value=0.599593	consensus_score=65.5	fisher_strand_p_value=0.656184	frequency=1	ks_quality_p_value=0.384321	major_base=T	major_cov=15/13	major_frequency=8.485e-01	minor_base=C	minor_cov=2/3	new_cov=15/13	polymorphism_frequency=8.485e-01	polymorphism_score=4.3	prediction=consensus	ref_cov=2/3	total_cov=17/17
RA	1388	.	NC_000913	3474425	0	T	G	bias_e_value=4641390	bias_p_value=0.999944	consensus_score=101.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98948	major_base=G	major_cov=15/22	major_frequency=8.043e-01	minor_base=T	minor_cov=4/5	new_cov=15/22	polymorphism_frequency=8.043e-01	polymorphism_score=12.6	prediction=consensus	ref_cov=4/5	total_cov=19/27
RA	1389	.	NC_000913	3481131	0	G	A	consensus_score=77.5	frequency=1	major_base=A	major_cov=14/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	1390	.	NC_000913	3486502	0	C	T	bias_e_value=2056860	bias_p_value=0.44313	consensus_score=52.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.154549	major_base=T	major_cov=16/8	major_frequency=8.276e-01	minor_base=C	minor_cov=3/2	new_cov=16/8	polymorphism_frequency=8.276e-01	polymorphism_score=7.3	prediction=consensus	ref_cov=3/2	total_cov=19/11
RA	1391	.	NC_000913	3500129	0	G	A	bias_e_value=4578470	bias_p_value=0.986388	consensus_score=22.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.839604	major_base=A	major_cov=2/9	major_frequency=8.462e-01	minor_base=G	minor_cov=0/2	new_cov=2/9	polymorphism_frequency=8.462e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/2	total_cov=2/11
RA	1392	.	NC_000913	3511466	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=93.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/15	major_frequency=8.947e-01	minor_base=C	minor_cov=2/2	new_cov=19/15	polymorphism_frequency=8.947e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=2/2	total_cov=21/17
RA	1393	.	NC_000913	3517171	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=135.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99899	major_base=A	major_cov=20/24	major_frequency=9.778e-01	minor_base=T	minor_cov=0/1	new_cov=20/24	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/25
RA	1394	.	NC_000913	3555047	0	G	T	bias_e_value=3726330	bias_p_value=0.802802	consensus_score=122.7	fisher_strand_p_value=0.488889	frequency=1	ks_quality_p_value=0.903924	major_base=T	major_cov=23/21	major_frequency=9.778e-01	minor_base=G	minor_cov=0/1	new_cov=23/21	polymorphism_frequency=9.778e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=23/22
RA	1395	.	NC_000913	3555048	0	T	G	bias_e_value=3886610	bias_p_value=0.837333	consensus_score=142.2	fisher_strand_p_value=0.488889	frequency=1	ks_quality_p_value=0.995968	major_base=G	major_cov=23/21	major_frequency=9.778e-01	minor_base=T	minor_cov=0/1	new_cov=23/21	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=23/22
RA	1396	.	NC_000913	3560362	0	G	A	bias_e_value=2287600	bias_p_value=0.492841	consensus_score=55.4	fisher_strand_p_value=0.6	frequency=1	ks_quality_p_value=0.304076	major_base=A	major_cov=12/12	major_frequency=8.571e-01	minor_base=G	minor_cov=3/1	new_cov=12/12	polymorphism_frequency=8.571e-01	polymorphism_score=3.3	prediction=consensus	ref_cov=3/1	total_cov=16/13
RA	1397	.	NC_000913	3560455	1	.	G	bias_e_value=3849160	bias_p_value=0.829266	consensus_score=58.9	fisher_strand_p_value=0.493506	frequency=1	ks_quality_p_value=0.96429	major_base=G	major_cov=11/9	major_frequency=9.091e-01	minor_base=.	minor_cov=2/0	new_cov=11/9	polymorphism_frequency=9.091e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=2/0	total_cov=13/9
RA	1398	.	NC_000913	3591074	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=65.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=8/16	major_frequency=9.600e-01	minor_base=G	minor_cov=0/1	new_cov=8/16	polymorphism_frequency=9.600e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/1	total_cov=8/17
RA	1399	.	NC_000913	3630221	0	C	T	bias_e_value=1518490	bias_p_value=0.327144	consensus_score=83.6	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=0.211396	major_base=T	major_cov=13/16	major_frequency=9.667e-01	minor_base=C	minor_cov=1/0	new_cov=13/16	polymorphism_frequency=9.667e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=14/16
RA	1400	.	NC_000913	3646970	0	G	T	bias_e_value=4635520	bias_p_value=0.99868	consensus_score=104.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.949056	major_base=T	major_cov=21/13	major_frequency=9.444e-01	minor_base=G	minor_cov=1/1	new_cov=21/13	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=22/14
RA	1401	.	NC_000913	3647428	0	C	T	bias_e_value=1253820	bias_p_value=0.270123	consensus_score=104.9	fisher_strand_p_value=0.362198	frequency=1	ks_quality_p_value=0.20798	major_base=T	major_cov=23/21	major_frequency=8.980e-01	minor_base=C	minor_cov=4/1	new_cov=23/21	polymorphism_frequency=8.980e-01	polymorphism_score=4.5	prediction=consensus	ref_cov=4/1	total_cov=28/25
RA	1402	.	NC_000913	3647949	0	C	T	bias_e_value=4631020	bias_p_value=0.997709	consensus_score=57.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.93308	major_base=T	major_cov=9/12	major_frequency=9.545e-01	minor_base=C	minor_cov=0/1	new_cov=9/12	polymorphism_frequency=9.545e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=9/14
RA	1403	.	NC_000913	3664594	0	G	A	bias_e_value=3972250	bias_p_value=0.855783	consensus_score=64.0	fisher_strand_p_value=0.595556	frequency=1	ks_quality_p_value=0.862303	major_base=A	major_cov=11/13	major_frequency=8.889e-01	minor_base=G	minor_cov=2/1	new_cov=11/13	polymorphism_frequency=8.889e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=2/1	total_cov=13/14
RA	1404	.	NC_000913	3665576	0	C	T	consensus_score=103.1	frequency=1	major_base=T	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	1405	.	NC_000913	3707883	0	G	A	bias_e_value=4626400	bias_p_value=0.996715	consensus_score=65.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.920044	major_base=A	major_cov=9/15	major_frequency=9.600e-01	minor_base=G	minor_cov=0/1	new_cov=9/15	polymorphism_frequency=9.600e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=10/16
RA	1406	.	NC_000913	3707947	0	C	A	bias_e_value=4641540	bias_p_value=0.999976	consensus_score=59.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993068	major_base=A	major_cov=9/14	major_frequency=9.200e-01	minor_base=C	minor_cov=1/1	new_cov=9/14	polymorphism_frequency=9.200e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/1	total_cov=10/15
RA	1407	.	NC_000913	3719429	0	G	A	bias_e_value=2173750	bias_p_value=0.468314	consensus_score=55.2	fisher_strand_p_value=0.183333	frequency=1	ks_quality_p_value=0.918313	major_base=A	major_cov=14/9	major_frequency=9.200e-01	minor_base=G	minor_cov=0/2	new_cov=14/9	polymorphism_frequency=9.200e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/2	total_cov=14/11
RA	1408	.	NC_000913	3725176	0	T	G	bias_e_value=4632040	bias_p_value=0.997928	consensus_score=104.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.936328	major_base=G	major_cov=15/23	major_frequency=9.500e-01	minor_base=T	minor_cov=1/1	new_cov=15/23	polymorphism_frequency=9.500e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/1	total_cov=16/24
RA	1409	.	NC_000913	3729440	0	C	T	bias_e_value=3412810	bias_p_value=0.735257	consensus_score=93.6	fisher_strand_p_value=0.576814	frequency=1	ks_quality_p_value=0.636909	major_base=T	major_cov=20/15	major_frequency=9.211e-01	minor_base=C	minor_cov=1/2	new_cov=20/15	polymorphism_frequency=9.211e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=1/2	total_cov=22/17
RA	1410	.	NC_000913	3729441	0	C	T	bias_e_value=3969040	bias_p_value=0.855093	consensus_score=98.4	fisher_strand_p_value=0.570303	frequency=1	ks_quality_p_value=0.898672	major_base=T	major_cov=21/15	major_frequency=9.231e-01	minor_base=C	minor_cov=1/2	new_cov=21/15	polymorphism_frequency=9.231e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=1/2	total_cov=22/17
RA	1411	.	NC_000913	3730560	0	C	T	bias_e_value=4637610	bias_p_value=0.999129	consensus_score=79.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.958555	major_base=T	major_cov=12/15	major_frequency=9.643e-01	minor_base=C	minor_cov=0/1	new_cov=12/15	polymorphism_frequency=9.643e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=12/16
RA	1412	.	NC_000913	3770539	0	C	T	bias_e_value=3466600	bias_p_value=0.746846	consensus_score=67.5	fisher_strand_p_value=0.379137	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/12	major_frequency=8.286e-01	minor_base=C	minor_cov=2/4	new_cov=17/12	polymorphism_frequency=8.286e-01	polymorphism_score=6.4	prediction=consensus	ref_cov=2/4	total_cov=19/17
RA	1413	.	NC_000913	3773173	0	G	.	bias_e_value=4641650	bias_p_value=1	consensus_score=102.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=15/15	major_frequency=8.333e-01	minor_base=G	minor_cov=3/3	new_cov=15/15	polymorphism_frequency=8.333e-01	polymorphism_score=17.6	prediction=consensus	ref_cov=3/3	total_cov=18/18
RA	1414	.	NC_000913	3773176	0	C	T	bias_e_value=4395940	bias_p_value=0.947064	consensus_score=83.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.692792	major_base=T	major_cov=16/15	major_frequency=8.611e-01	minor_base=C	minor_cov=2/3	new_cov=16/15	polymorphism_frequency=8.611e-01	polymorphism_score=2.4	prediction=consensus	ref_cov=2/3	total_cov=18/18
RA	1415	.	NC_000913	3815883	1	.	C	bias_e_value=4038660	bias_p_value=0.870091	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.7	fisher_strand_p_value=0.672174	frequency=7.941e-01	ks_quality_p_value=0.797008	major_base=C	major_cov=16/11	major_frequency=7.941e-01	minor_base=.	minor_cov=3/4	new_cov=16/11	polymorphism_frequency=7.941e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=3/4	total_cov=20/15
RA	1416	.	NC_000913	3834564	0	G	A	bias_e_value=4309230	bias_p_value=0.928383	consensus_score=120.8	fisher_strand_p_value=0.64625	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/16	major_frequency=8.980e-01	minor_base=G	minor_cov=4/1	new_cov=28/16	polymorphism_frequency=8.980e-01	polymorphism_score=2.5	prediction=consensus	ref_cov=4/1	total_cov=35/17
RA	1417	.	NC_000913	3926991	0	G	A	bias_e_value=4641490	bias_p_value=0.999966	consensus_score=55.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991753	major_base=A	major_cov=12/9	major_frequency=9.130e-01	minor_base=G	minor_cov=1/1	new_cov=12/9	polymorphism_frequency=9.130e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=1/1	total_cov=13/10
RA	1418	.	NC_000913	3931779	0	T	C	consensus_score=68.4	frequency=1	major_base=C	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	1419	.	NC_000913	3966530	0	C	T	bias_e_value=4196370	bias_p_value=0.904068	consensus_score=69.1	fisher_strand_p_value=0.656184	frequency=1	ks_quality_p_value=0.907191	major_base=T	major_cov=13/15	major_frequency=8.485e-01	minor_base=C	minor_cov=3/2	new_cov=13/15	polymorphism_frequency=8.485e-01	polymorphism_score=5.3	prediction=consensus	ref_cov=3/2	total_cov=16/17
RA	1420	.	NC_000913	3966531	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=65.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/14	major_frequency=8.438e-01	minor_base=C	minor_cov=3/2	new_cov=13/14	polymorphism_frequency=8.438e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=3/2	total_cov=16/17
RA	1421	.	NC_000913	3967770	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=49.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/8	major_frequency=9.444e-01	minor_base=C	minor_cov=1/0	new_cov=9/8	polymorphism_frequency=9.444e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=1/0	total_cov=10/8
RA	1422	.	NC_000913	4037496	0	A	T	bias_e_value=4122190	bias_p_value=0.888086	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.1	fisher_strand_p_value=0.745988	frequency=3.659e-01	ks_quality_p_value=0.758587	major_base=A	major_cov=13/13	major_frequency=6.341e-01	minor_base=T	minor_cov=6/9	new_cov=6/9	polymorphism_frequency=3.659e-01	polymorphism_score=41.2	prediction=polymorphism	ref_cov=13/13	total_cov=20/23
RA	1423	.	NC_000913	4133252	0	C	T	bias_e_value=4608270	bias_p_value=0.992809	consensus_score=36.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.882497	major_base=T	major_cov=5/11	major_frequency=8.889e-01	minor_base=C	minor_cov=0/2	new_cov=5/11	polymorphism_frequency=8.889e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/2	total_cov=5/13
RA	1424	.	NC_000913	4223638	0	T	C	bias_e_value=3511260	bias_p_value=0.756468	consensus_score=44.0	fisher_strand_p_value=0.539243	frequency=1	ks_quality_p_value=0.721742	major_base=C	major_cov=4/16	major_frequency=8.696e-01	minor_base=T	minor_cov=1/2	new_cov=4/16	polymorphism_frequency=8.696e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/2	total_cov=5/18
RA	1425	.	NC_000913	4226699	0	G	A	bias_e_value=3909080	bias_p_value=0.842175	consensus_score=98.2	fisher_strand_p_value=0.679608	frequency=1	ks_quality_p_value=0.726465	major_base=A	major_cov=16/24	major_frequency=8.696e-01	minor_base=G	minor_cov=3/3	new_cov=16/24	polymorphism_frequency=8.696e-01	polymorphism_score=6.9	prediction=consensus	ref_cov=3/3	total_cov=19/27
RA	1426	.	NC_000913	4281093	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=102.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/23	major_frequency=9.744e-01	minor_base=G	minor_cov=0/1	new_cov=15/23	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=15/24
RA	1427	.	NC_000913	4283043	0	G	A	bias_e_value=3830620	bias_p_value=0.82527	consensus_score=33.6	fisher_strand_p_value=0.477124	frequency=1	ks_quality_p_value=0.986207	major_base=A	major_cov=8/8	major_frequency=8.889e-01	minor_base=G	minor_cov=2/0	new_cov=8/8	polymorphism_frequency=8.889e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=2/0	total_cov=10/8
RA	1428	.	NC_000913	4283465	0	G	A	bias_e_value=4639650	bias_p_value=0.99957	consensus_score=71.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.970805	major_base=A	major_cov=15/12	major_frequency=9.000e-01	minor_base=G	minor_cov=2/1	new_cov=15/12	polymorphism_frequency=9.000e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=2/1	total_cov=17/13
RA	1429	.	NC_000913	4284646	0	G	A	bias_e_value=3436290	bias_p_value=0.740316	consensus_score=113.5	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.786315	major_base=A	major_cov=20/17	major_frequency=9.737e-01	minor_base=G	minor_cov=0/1	new_cov=20/17	polymorphism_frequency=9.737e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=20/19
RA	1430	.	NC_000913	4285238	0	G	A	bias_e_value=4633750	bias_p_value=0.998297	consensus_score=119.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.942213	major_base=A	major_cov=24/16	major_frequency=9.524e-01	minor_base=G	minor_cov=1/1	new_cov=24/16	polymorphism_frequency=9.524e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=25/17
RA	1431	.	NC_000913	4288385	0	G	A	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=71.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996933	major_base=A	major_cov=16/12	major_frequency=9.032e-01	minor_base=G	minor_cov=2/1	new_cov=16/12	polymorphism_frequency=9.032e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=2/1	total_cov=18/14
RA	1432	.	NC_000913	4296060	0	C	T	bias_e_value=3982690	bias_p_value=0.858033	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.1	fisher_strand_p_value=1	frequency=2.903e-01	ks_quality_p_value=0.516942	major_base=C	major_cov=11/11	major_frequency=7.097e-01	minor_base=T	minor_cov=5/4	new_cov=5/4	polymorphism_frequency=2.903e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=11/11	total_cov=16/15
RA	1433	.	NC_000913	4296380	1	.	C	bias_e_value=3862910	bias_p_value=0.832227	consensus_score=81.2	fisher_strand_p_value=0.581971	frequency=1	ks_quality_p_value=0.8246	major_base=C	major_cov=14/18	major_frequency=9.143e-01	minor_base=.	minor_cov=2/1	new_cov=14/18	polymorphism_frequency=9.143e-01	polymorphism_score=1.9	prediction=consensus	ref_cov=2/1	total_cov=16/19
RA	1434	.	NC_000913	4296380	2	.	G	bias_e_value=3969070	bias_p_value=0.855099	consensus_score=82.2	fisher_strand_p_value=0.590909	frequency=1	ks_quality_p_value=0.867348	major_base=G	major_cov=14/17	major_frequency=9.118e-01	minor_base=.	minor_cov=2/1	new_cov=14/17	polymorphism_frequency=9.118e-01	polymorphism_score=1.5	prediction=consensus	ref_cov=2/1	total_cov=16/19
RA	1435	.	NC_000913	4296428	0	G	A	bias_e_value=2371040	bias_p_value=0.510819	consensus_score=85.9	fisher_strand_p_value=0.609366	frequency=1	ks_quality_p_value=0.317043	major_base=A	major_cov=17/18	major_frequency=8.974e-01	minor_base=G	minor_cov=1/3	new_cov=17/18	polymorphism_frequency=8.974e-01	polymorphism_score=3.5	prediction=consensus	ref_cov=1/3	total_cov=18/21
RA	1436	.	NC_000913	4297782	0	G	A	bias_e_value=4627850	bias_p_value=0.997026	consensus_score=87.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.923875	major_base=A	major_cov=19/12	major_frequency=9.394e-01	minor_base=G	minor_cov=1/1	new_cov=19/12	polymorphism_frequency=9.394e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/1	total_cov=21/13
RA	1437	.	NC_000913	4298401	0	G	A	bias_e_value=2772910	bias_p_value=0.597396	consensus_score=116.1	fisher_strand_p_value=0.564834	frequency=1	ks_quality_p_value=0.443659	major_base=A	major_cov=25/17	major_frequency=9.333e-01	minor_base=G	minor_cov=1/2	new_cov=25/17	polymorphism_frequency=9.333e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=1/2	total_cov=26/20
RA	1438	.	NC_000913	4306035	0	C	T	bias_e_value=2110000	bias_p_value=0.45458	consensus_score=106.3	fisher_strand_p_value=0.487179	frequency=1	ks_quality_p_value=0.329954	major_base=T	major_cov=19/18	major_frequency=9.487e-01	minor_base=C	minor_cov=0/2	new_cov=19/18	polymorphism_frequency=9.487e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=0/2	total_cov=19/20
RA	1439	.	NC_000913	4306960	0	G	A	bias_e_value=3885100	bias_p_value=0.837008	consensus_score=87.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.486466	major_base=A	major_cov=13/19	major_frequency=9.412e-01	minor_base=G	minor_cov=1/1	new_cov=13/19	polymorphism_frequency=9.412e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=14/20
RA	1440	.	NC_000913	4307151	0	G	A	bias_e_value=2676730	bias_p_value=0.576676	consensus_score=53.5	fisher_strand_p_value=0.595556	frequency=1	ks_quality_p_value=0.396164	major_base=A	major_cov=11/13	major_frequency=8.889e-01	minor_base=G	minor_cov=2/1	new_cov=11/13	polymorphism_frequency=8.889e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=2/1	total_cov=13/14
RA	1441	.	NC_000913	4318215	0	G	A	bias_e_value=3761350	bias_p_value=0.810348	consensus_score=82.0	fisher_strand_p_value=0.65251	frequency=1	ks_quality_p_value=0.691605	major_base=A	major_cov=15/18	major_frequency=8.684e-01	minor_base=G	minor_cov=3/2	new_cov=15/18	polymorphism_frequency=8.684e-01	polymorphism_score=2.4	prediction=consensus	ref_cov=3/2	total_cov=20/20
RA	1442	.	NC_000913	4320007	0	G	A	bias_e_value=4117030	bias_p_value=0.886974	consensus_score=159.3	fisher_strand_p_value=0.56395	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/24	major_frequency=9.524e-01	minor_base=G	minor_cov=1/2	new_cov=36/24	polymorphism_frequency=9.524e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/2	total_cov=38/28
RA	1443	.	NC_000913	4320344	0	G	A	bias_e_value=4108450	bias_p_value=0.885127	consensus_score=131.5	fisher_strand_p_value=0.601064	frequency=1	ks_quality_p_value=0.932912	major_base=A	major_cov=21/24	major_frequency=9.375e-01	minor_base=G	minor_cov=2/1	new_cov=21/24	polymorphism_frequency=9.375e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=2/1	total_cov=25/26
RA	1444	.	NC_000913	4320416	0	G	A	bias_e_value=4225120	bias_p_value=0.910262	consensus_score=144.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.607465	major_base=A	major_cov=28/22	major_frequency=9.615e-01	minor_base=G	minor_cov=1/1	new_cov=28/22	polymorphism_frequency=9.615e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/1	total_cov=29/24
RA	1445	.	NC_000913	4320543	0	G	A	bias_e_value=1775360	bias_p_value=0.382485	consensus_score=176.1	fisher_strand_p_value=0.230037	frequency=1	ks_quality_p_value=0.538292	major_base=A	major_cov=32/28	major_frequency=9.677e-01	minor_base=G	minor_cov=0/2	new_cov=32/28	polymorphism_frequency=9.677e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/2	total_cov=32/31
RA	1446	.	NC_000913	4321488	0	G	A	bias_e_value=3680020	bias_p_value=0.792825	consensus_score=140.0	fisher_strand_p_value=0.633577	frequency=1	ks_quality_p_value=0.678534	major_base=A	major_cov=18/30	major_frequency=9.231e-01	minor_base=G	minor_cov=2/2	new_cov=18/30	polymorphism_frequency=9.231e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=2/2	total_cov=22/33
RA	1447	.	NC_000913	4321603	0	T	C	bias_e_value=2182670	bias_p_value=0.470235	consensus_score=167.1	fisher_strand_p_value=0.172932	frequency=1	ks_quality_p_value=0.979792	major_base=C	major_cov=22/33	major_frequency=9.649e-01	minor_base=T	minor_cov=2/0	new_cov=22/33	polymorphism_frequency=9.649e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=2/0	total_cov=24/33
RA	1448	.	NC_000913	4322786	0	G	A	bias_e_value=4071570	bias_p_value=0.877181	consensus_score=125.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.547286	major_base=A	major_cov=20/24	major_frequency=8.980e-01	minor_base=G	minor_cov=2/3	new_cov=20/24	polymorphism_frequency=8.980e-01	polymorphism_score=1.1	prediction=consensus	ref_cov=2/3	total_cov=22/27
RA	1449	.	NC_000913	4325644	0	C	T	bias_e_value=2516920	bias_p_value=0.542247	consensus_score=79.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.212903	major_base=T	major_cov=19/15	major_frequency=8.095e-01	minor_base=C	minor_cov=5/3	new_cov=19/15	polymorphism_frequency=8.095e-01	polymorphism_score=12.9	prediction=consensus	ref_cov=5/3	total_cov=26/18
RA	1450	.	NC_000913	4328622	0	T	C	bias_e_value=4641620	bias_p_value=0.999993	consensus_score=91.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99633	major_base=C	major_cov=13/19	major_frequency=9.412e-01	minor_base=T	minor_cov=1/1	new_cov=13/19	polymorphism_frequency=9.412e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/1	total_cov=15/21
RA	1451	.	NC_000913	4331890	0	C	T	bias_e_value=3148890	bias_p_value=0.678399	consensus_score=66.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.314582	major_base=T	major_cov=11/16	major_frequency=8.710e-01	minor_base=C	minor_cov=1/3	new_cov=11/16	polymorphism_frequency=8.710e-01	polymorphism_score=3.2	prediction=consensus	ref_cov=1/3	total_cov=12/20
RA	1452	.	NC_000913	4340953	0	C	T	bias_e_value=3335700	bias_p_value=0.718645	consensus_score=73.8	fisher_strand_p_value=0.354731	frequency=1	ks_quality_p_value=0.989909	major_base=T	major_cov=14/15	major_frequency=8.529e-01	minor_base=C	minor_cov=1/4	new_cov=14/15	polymorphism_frequency=8.529e-01	polymorphism_score=2.2	prediction=consensus	ref_cov=1/4	total_cov=15/19
RA	1453	.	NC_000913	4344501	0	G	A	bias_e_value=3639020	bias_p_value=0.783993	consensus_score=60.1	fisher_strand_p_value=0.434783	frequency=1	ks_quality_p_value=0.965052	major_base=A	major_cov=13/9	major_frequency=9.565e-01	minor_base=T	minor_cov=0/1	new_cov=13/9	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	1454	.	NC_000913	4344935	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=54.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/9	major_frequency=8.800e-01	minor_base=G	minor_cov=2/1	new_cov=13/9	polymorphism_frequency=8.800e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=2/1	total_cov=16/10
RA	1455	.	NC_000913	4390331	0	C	T	bias_e_value=4198480	bias_p_value=0.904523	consensus_score=84.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.596163	major_base=T	major_cov=12/17	major_frequency=9.667e-01	minor_base=C	minor_cov=0/1	new_cov=12/17	polymorphism_frequency=9.667e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=12/18
RA	1456	.	NC_000913	4402938	0	G	A	bias_e_value=1177960	bias_p_value=0.25378	consensus_score=131.5	fisher_strand_p_value=0.165217	frequency=1	ks_quality_p_value=0.418306	major_base=A	major_cov=17/27	major_frequency=9.565e-01	minor_base=G	minor_cov=2/0	new_cov=17/27	polymorphism_frequency=9.565e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=2/0	total_cov=20/27
RA	1457	.	NC_000913	4410859	0	C	T	bias_e_value=1298120	bias_p_value=0.279668	consensus_score=88.2	fisher_strand_p_value=0.34375	frequency=1	ks_quality_p_value=0.229981	major_base=T	major_cov=21/10	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=21/10	polymorphism_frequency=9.688e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=21/11
RA	1458	.	NC_000913	4414192	0	G	A	bias_e_value=2671850	bias_p_value=0.575625	consensus_score=107.0	fisher_strand_p_value=0.486486	frequency=1	ks_quality_p_value=0.483489	major_base=A	major_cov=19/17	major_frequency=9.730e-01	minor_base=G	minor_cov=0/1	new_cov=19/17	polymorphism_frequency=9.730e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=19/18
RA	1459	.	NC_000913	4430584	0	C	T	bias_e_value=4587870	bias_p_value=0.988414	consensus_score=55.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.851688	major_base=T	major_cov=16/7	major_frequency=8.846e-01	minor_base=C	minor_cov=2/1	new_cov=16/7	polymorphism_frequency=8.846e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=2/1	total_cov=18/8
RA	1460	.	NC_000913	4431220	0	C	T	bias_e_value=3611330	bias_p_value=0.778027	consensus_score=131.7	fisher_strand_p_value=0.414894	frequency=1	ks_quality_p_value=0.994911	major_base=T	major_cov=18/31	major_frequency=8.750e-01	minor_base=C	minor_cov=4/3	new_cov=18/31	polymorphism_frequency=8.750e-01	polymorphism_score=6.6	prediction=consensus	ref_cov=4/3	total_cov=22/34
RA	1461	.	NC_000913	4437890	0	C	T	consensus_score=18.9	frequency=1	major_base=T	major_cov=4/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/4
RA	1462	.	NC_000913	4439578	0	G	A	consensus_score=52.3	frequency=1	major_base=A	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	1463	.	NC_000913	4440768	0	G	A	bias_e_value=332041	bias_p_value=0.0715351	consensus_score=81.0	fisher_strand_p_value=0.63964	frequency=1	ks_quality_p_value=0.0210754	major_base=A	major_cov=14/19	major_frequency=8.684e-01	minor_base=G	minor_cov=3/2	new_cov=14/19	polymorphism_frequency=8.684e-01	polymorphism_score=6.1	prediction=consensus	ref_cov=3/2	total_cov=17/21
RA	1464	.	NC_000913	4445315	0	C	T	bias_e_value=2823760	bias_p_value=0.608352	consensus_score=133.0	fisher_strand_p_value=0.49734	frequency=1	ks_quality_p_value=0.519969	major_base=T	major_cov=21/25	major_frequency=9.583e-01	minor_base=C	minor_cov=0/2	new_cov=21/25	polymorphism_frequency=9.583e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/2	total_cov=22/29
RA	1465	.	NC_000913	4445924	0	C	T	bias_e_value=3955200	bias_p_value=0.852109	consensus_score=66.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.50808	major_base=T	major_cov=16/13	major_frequency=8.788e-01	minor_base=C	minor_cov=2/2	new_cov=16/13	polymorphism_frequency=8.788e-01	polymorphism_score=4.2	prediction=consensus	ref_cov=2/2	total_cov=19/15
RA	1466	.	NC_000913	4446482	0	C	T	bias_e_value=4583000	bias_p_value=0.987364	consensus_score=100.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.845297	major_base=T	major_cov=21/13	major_frequency=9.714e-01	minor_base=C	minor_cov=1/0	new_cov=21/13	polymorphism_frequency=9.714e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=22/13
RA	1467	.	NC_000913	4448304	0	C	T	consensus_score=81.4	frequency=1	major_base=T	major_cov=13/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	1468	.	NC_000913	4463952	0	G	A	bias_e_value=4637610	bias_p_value=0.999129	consensus_score=75.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.958563	major_base=A	major_cov=14/15	major_frequency=8.788e-01	minor_base=G	minor_cov=2/2	new_cov=14/15	polymorphism_frequency=8.788e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=2/2	total_cov=16/17
RA	1469	.	NC_000913	4473900	0	C	T	bias_e_value=2680820	bias_p_value=0.577557	consensus_score=72.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.236549	major_base=T	major_cov=16/13	major_frequency=9.355e-01	minor_base=C	minor_cov=1/1	new_cov=16/13	polymorphism_frequency=9.355e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=17/15
RA	1470	.	NC_000913	4475493	0	T	C	consensus_score=44.6	frequency=1	major_base=C	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	1471	.	NC_000913	4476605	0	G	A	bias_e_value=3452160	bias_p_value=0.743735	consensus_score=27.0	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=0.814543	major_base=A	major_cov=5/7	major_frequency=9.231e-01	minor_base=G	minor_cov=1/0	new_cov=5/7	polymorphism_frequency=9.231e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=6/7
RA	1472	.	NC_000913	4489016	0	C	T	consensus_score=113.8	frequency=1	major_base=T	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	1473	.	NC_000913	4492470	0	C	A	consensus_score=69.7	frequency=1	major_base=A	major_cov=13/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	1474	.	NC_000913	4492583	1	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=43.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=8/9	major_frequency=8.500e-01	minor_base=.	minor_cov=2/1	new_cov=8/9	polymorphism_frequency=8.500e-01	polymorphism_score=2.0	prediction=consensus	ref_cov=2/1	total_cov=10/10
RA	1475	.	NC_000913	4495194	0	A	T	bias_e_value=3162060	bias_p_value=0.681236	consensus_score=101.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.317043	major_base=T	major_cov=17/18	major_frequency=8.974e-01	minor_base=A	minor_cov=2/2	new_cov=17/18	polymorphism_frequency=8.974e-01	polymorphism_score=5.3	prediction=consensus	ref_cov=2/2	total_cov=19/20
RA	1476	.	NC_000913	4496168	0	G	T	bias_e_value=4584880	bias_p_value=0.987768	consensus_score=70.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.847724	major_base=T	major_cov=13/18	major_frequency=9.394e-01	minor_base=G	minor_cov=1/1	new_cov=13/18	polymorphism_frequency=9.394e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/1	total_cov=14/19
RA	1477	.	NC_000913	4496885	0	G	A	consensus_score=113.8	frequency=1	major_base=A	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	1478	.	NC_000913	4507424	0	G	C	bias_e_value=4641610	bias_p_value=0.999991	consensus_score=63.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99568	major_base=C	major_cov=12/9	major_frequency=9.545e-01	minor_base=A	minor_cov=1/0	new_cov=12/9	polymorphism_frequency=9.545e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=14/9
RA	1479	.	NC_000913	4509416	0	T	C	bias_e_value=1255350	bias_p_value=0.270453	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.9	fisher_strand_p_value=0.107243	frequency=3.621e-01	ks_quality_p_value=0.703612	major_base=T	major_cov=19/18	major_frequency=6.379e-01	minor_base=C	minor_cov=6/15	new_cov=6/15	polymorphism_frequency=3.621e-01	polymorphism_score=47.9	prediction=polymorphism	ref_cov=19/18	total_cov=25/33
RA	1480	.	NC_000913	4509428	0	A	G	bias_e_value=422948	bias_p_value=0.0911201	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.7	fisher_strand_p_value=0.15225	frequency=3.846e-01	ks_quality_p_value=0.119548	major_base=A	major_cov=17/15	major_frequency=6.154e-01	minor_base=G	minor_cov=6/14	new_cov=6/14	polymorphism_frequency=3.846e-01	polymorphism_score=47.2	prediction=polymorphism	ref_cov=17/15	total_cov=23/31
RA	1481	.	NC_000913	4509463	0	T	G	bias_e_value=65564.8	bias_p_value=0.0141253	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.1	fisher_strand_p_value=0.574014	frequency=3.333e-01	ks_quality_p_value=0.00339922	major_base=T	major_cov=18/20	major_frequency=6.667e-01	minor_base=G	minor_cov=7/12	new_cov=7/12	polymorphism_frequency=3.333e-01	polymorphism_score=42.8	prediction=polymorphism	ref_cov=18/20	total_cov=26/32
RA	1482	.	NC_000913	4509478	1	.	C	bias_e_value=2734510	bias_p_value=0.589123	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.3	fisher_strand_p_value=0.557826	frequency=3.091e-01	ks_quality_p_value=0.438608	major_base=.	major_cov=18/20	major_frequency=6.909e-01	minor_base=C	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=3.091e-01	polymorphism_score=79.3	prediction=polymorphism	ref_cov=18/20	total_cov=24/31
RA	1483	.	NC_000913	4509487	0	A	G	bias_e_value=2059640	bias_p_value=0.443731	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.9	fisher_strand_p_value=1	frequency=3.519e-01	ks_quality_p_value=0.154871	major_base=A	major_cov=16/19	major_frequency=6.481e-01	minor_base=G	minor_cov=8/11	new_cov=8/11	polymorphism_frequency=3.519e-01	polymorphism_score=41.6	prediction=polymorphism	ref_cov=16/19	total_cov=24/30
RA	1484	.	NC_000913	4509524	0	C	T	bias_e_value=3604950	bias_p_value=0.776652	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.5	fisher_strand_p_value=0.545556	frequency=3.200e-01	ks_quality_p_value=0.753786	major_base=C	major_cov=17/17	major_frequency=6.800e-01	minor_base=T	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=3.200e-01	polymorphism_score=31.3	prediction=polymorphism	ref_cov=17/17	total_cov=23/28
RA	1485	.	NC_000913	4509537	0	G	A	bias_e_value=4587040	bias_p_value=0.988235	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.8	fisher_strand_p_value=1	frequency=2.766e-01	ks_quality_p_value=0.85058	major_base=G	major_cov=17/17	major_frequency=7.234e-01	minor_base=A	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.766e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=17/17	total_cov=24/23
RA	1486	.	NC_000913	4509544	0	G	A	bias_e_value=4626730	bias_p_value=0.996785	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.2	fisher_strand_p_value=1	frequency=2.708e-01	ks_quality_p_value=0.920887	major_base=G	major_cov=17/18	major_frequency=7.292e-01	minor_base=A	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.708e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=17/18	total_cov=24/24
RA	1487	.	NC_000913	4509556	0	T	C	bias_e_value=3628350	bias_p_value=0.781694	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.1	fisher_strand_p_value=0.746046	frequency=2.667e-01	ks_quality_p_value=0.558881	major_base=T	major_cov=17/16	major_frequency=7.333e-01	minor_base=C	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.667e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=17/16	total_cov=24/22
RA	1488	.	NC_000913	4509586	0	A	C	bias_e_value=4480610	bias_p_value=0.965306	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.6	fisher_strand_p_value=0.749169	frequency=6.512e-01	ks_quality_p_value=0.999004	major_base=C	major_cov=14/14	major_frequency=6.512e-01	minor_base=A	minor_cov=9/6	new_cov=14/14	polymorphism_frequency=6.512e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=9/6	total_cov=23/20
RA	1489	.	NC_000913	4509592	0	G	A	bias_e_value=4469450	bias_p_value=0.9629	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.6	fisher_strand_p_value=0.740275	frequency=2.727e-01	ks_quality_p_value=1	major_base=G	major_cov=16/16	major_frequency=7.273e-01	minor_base=A	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.727e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=16/16	total_cov=23/21
RA	1490	.	NC_000913	4509623	0	G	A	bias_e_value=4622860	bias_p_value=0.995951	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.4	fisher_strand_p_value=1	frequency=2.727e-01	ks_quality_p_value=0.911373	major_base=G	major_cov=17/15	major_frequency=7.273e-01	minor_base=A	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.727e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=17/15	total_cov=24/20
RA	1491	.	NC_000913	4509628	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.8	fisher_strand_p_value=1	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=17/15	major_frequency=7.273e-01	minor_base=G	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.727e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=17/15	total_cov=24/20
RA	1492	.	NC_000913	4509630	0	C	T	bias_e_value=2761670	bias_p_value=0.594975	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.7	fisher_strand_p_value=1	frequency=2.273e-01	ks_quality_p_value=0.248849	major_base=C	major_cov=19/15	major_frequency=7.727e-01	minor_base=T	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.273e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=19/15	total_cov=25/20
RA	1493	.	NC_000913	4509632	0	A	G	bias_e_value=4559570	bias_p_value=0.982316	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.6	fisher_strand_p_value=1	frequency=2.558e-01	ks_quality_p_value=0.817931	major_base=A	major_cov=16/16	major_frequency=7.442e-01	minor_base=G	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.558e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=16/16	total_cov=25/21
RA	1494	.	NC_000913	4509633	0	C	T	bias_e_value=4641540	bias_p_value=0.999976	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.2	fisher_strand_p_value=1	frequency=2.326e-01	ks_quality_p_value=0.993118	major_base=C	major_cov=18/15	major_frequency=7.674e-01	minor_base=T	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.326e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=18/15	total_cov=25/21
RA	1495	.	NC_000913	4509637	0	C	T	bias_e_value=4273130	bias_p_value=0.920605	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.3	fisher_strand_p_value=0.746046	frequency=2.667e-01	ks_quality_p_value=0.843068	major_base=C	major_cov=17/16	major_frequency=7.333e-01	minor_base=T	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.667e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=17/16	total_cov=24/21
RA	1496	.	NC_000913	4509640	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.7	fisher_strand_p_value=1	frequency=2.558e-01	ks_quality_p_value=1	major_base=T	major_cov=16/16	major_frequency=7.442e-01	minor_base=C	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.558e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=16/16	total_cov=23/21
RA	1497	.	NC_000913	4509655	0	T	G	bias_e_value=4463800	bias_p_value=0.961682	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.5	fisher_strand_p_value=0.736261	frequency=2.292e-01	ks_quality_p_value=1	major_base=T	major_cov=17/20	major_frequency=7.708e-01	minor_base=G	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.292e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=17/20	total_cov=24/25
RA	1498	.	NC_000913	4509667	0	A	C	bias_e_value=4641280	bias_p_value=0.99992	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.4	fisher_strand_p_value=1	frequency=2.041e-01	ks_quality_p_value=0.987416	major_base=A	major_cov=18/21	major_frequency=7.959e-01	minor_base=C	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.041e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=18/21	total_cov=23/26
RA	1499	.	NC_000913	4510238	0	T	G	bias_e_value=4641590	bias_p_value=0.999986	consensus_score=58.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994751	major_base=G	major_cov=10/9	major_frequency=9.500e-01	minor_base=A	minor_cov=1/0	new_cov=10/9	polymorphism_frequency=9.500e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	1500	.	NC_000913	4512293	0	T	C	bias_e_value=3217230	bias_p_value=0.693123	consensus_score=98.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.32754	major_base=C	major_cov=22/19	major_frequency=9.762e-01	minor_base=T	minor_cov=1/0	new_cov=22/19	polymorphism_frequency=9.762e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=23/19
RA	1501	.	NC_000913	4512501	0	C	T	bias_e_value=3850220	bias_p_value=0.829494	consensus_score=122.3	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/19	major_frequency=9.762e-01	minor_base=G	minor_cov=0/1	new_cov=22/19	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=22/21
RA	1502	.	NC_000913	4512642	0	T	C	bias_e_value=4611130	bias_p_value=0.993424	consensus_score=135.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.88753	major_base=C	major_cov=23/24	major_frequency=9.038e-01	minor_base=T	minor_cov=3/2	new_cov=23/24	polymorphism_frequency=9.038e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=3/2	total_cov=26/26
RA	1503	.	NC_000913	4513044	0	T	C	bias_e_value=3937620	bias_p_value=0.848322	consensus_score=116.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.502532	major_base=C	major_cov=20/20	major_frequency=9.524e-01	minor_base=T	minor_cov=1/1	new_cov=20/20	polymorphism_frequency=9.524e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/1	total_cov=22/21
RA	1504	.	NC_000913	4513841	0	A	G	bias_e_value=357797	bias_p_value=0.0770839	consensus_score=79.9	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.0305521	major_base=G	major_cov=14/15	major_frequency=9.355e-01	minor_base=A	minor_cov=2/0	new_cov=14/15	polymorphism_frequency=9.355e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=2/0	total_cov=17/15
RA	1505	.	NC_000913	4514139	0	A	C	bias_e_value=4633210	bias_p_value=0.99818	consensus_score=73.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.940281	major_base=C	major_cov=17/11	major_frequency=9.655e-01	minor_base=A	minor_cov=1/0	new_cov=17/11	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=18/11
RA	1506	.	NC_000913	4514287	0	G	C	bias_e_value=2050390	bias_p_value=0.441736	consensus_score=82.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.153804	major_base=C	major_cov=17/16	major_frequency=8.250e-01	minor_base=G	minor_cov=4/3	new_cov=17/16	polymorphism_frequency=8.250e-01	polymorphism_score=15.9	prediction=consensus	ref_cov=4/3	total_cov=21/19
RA	1507	.	NC_000913	4514983	0	A	C	bias_e_value=4174280	bias_p_value=0.899309	consensus_score=217.6	fisher_strand_p_value=0.593236	frequency=1	ks_quality_p_value=0.988212	major_base=C	major_cov=36/30	major_frequency=9.565e-01	minor_base=A	minor_cov=1/2	new_cov=36/30	polymorphism_frequency=9.565e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/2	total_cov=37/32
RA	1508	.	NC_000913	4515348	0	A	C	consensus_score=170.7	frequency=1	major_base=C	major_cov=22/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/31
RA	1509	.	NC_000913	4516110	0	C	T	bias_e_value=2296690	bias_p_value=0.4948	consensus_score=143.9	fisher_strand_p_value=0.183599	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/30	major_frequency=9.623e-01	minor_base=G	minor_cov=2/0	new_cov=21/30	polymorphism_frequency=9.623e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=25/30
RA	1510	.	NC_000913	4516378	0	G	A	bias_e_value=2731950	bias_p_value=0.588572	consensus_score=113.6	fisher_strand_p_value=0.575075	frequency=1	ks_quality_p_value=0.424772	major_base=A	major_cov=17/23	major_frequency=9.302e-01	minor_base=G	minor_cov=2/1	new_cov=17/23	polymorphism_frequency=9.302e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=2/1	total_cov=19/24
RA	1511	.	NC_000913	4516632	0	T	C	bias_e_value=2651730	bias_p_value=0.571291	consensus_score=155.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.232229	major_base=C	major_cov=19/32	major_frequency=9.808e-01	minor_base=T	minor_cov=0/1	new_cov=19/32	polymorphism_frequency=9.808e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=19/33
RA	1512	.	NC_000913	4516959	0	C	T	bias_e_value=3978540	bias_p_value=0.857138	consensus_score=54.8	fisher_strand_p_value=0.535043	frequency=1	ks_quality_p_value=0.96364	major_base=T	major_cov=8/16	major_frequency=8.889e-01	minor_base=C	minor_cov=2/1	new_cov=8/16	polymorphism_frequency=8.889e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=2/1	total_cov=12/17
RA	1513	.	NC_000913	4517127	0	C	A	bias_e_value=4521040	bias_p_value=0.974016	consensus_score=126.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.780873	major_base=A	major_cov=21/24	major_frequency=9.783e-01	minor_base=C	minor_cov=0/1	new_cov=21/24	polymorphism_frequency=9.783e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=22/25
RA	1514	.	NC_000913	4518627	0	C	A	bias_e_value=2859060	bias_p_value=0.615957	consensus_score=118.2	fisher_strand_p_value=0.264271	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/13	major_frequency=9.318e-01	minor_base=T	minor_cov=1/2	new_cov=28/13	polymorphism_frequency=9.318e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/15
RA	1515	.	NC_000913	4518681	0	A	C	bias_e_value=3352000	bias_p_value=0.722156	consensus_score=91.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.354522	major_base=C	major_cov=25/12	major_frequency=9.737e-01	minor_base=A	minor_cov=1/0	new_cov=25/12	polymorphism_frequency=9.737e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=26/12
RA	1516	.	NC_000913	4518793	0	C	T	bias_e_value=3861400	bias_p_value=0.831903	consensus_score=106.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.479452	major_base=T	major_cov=20/21	major_frequency=9.535e-01	minor_base=C	minor_cov=1/1	new_cov=20/21	polymorphism_frequency=9.535e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/1	total_cov=22/22
RA	1517	.	NC_000913	4530252	0	C	A	bias_e_value=4579290	bias_p_value=0.986565	consensus_score=83.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.840624	major_base=A	major_cov=15/17	major_frequency=8.889e-01	minor_base=C	minor_cov=2/2	new_cov=15/17	polymorphism_frequency=8.889e-01	polymorphism_score=2.2	prediction=consensus	ref_cov=2/2	total_cov=17/19
RA	1518	.	NC_000913	4532063	0	C	T	bias_e_value=3481110	bias_p_value=0.749973	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.9	fisher_strand_p_value=0.688018	frequency=7.879e-01	ks_quality_p_value=0.555763	major_base=T	major_cov=12/14	major_frequency=7.879e-01	minor_base=C	minor_cov=4/3	new_cov=12/14	polymorphism_frequency=7.879e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=4/3	total_cov=16/17
RA	1519	.	NC_000913	4535073	0	A	G	consensus_score=79.0	frequency=1	major_base=G	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	1520	.	NC_000913	4535189	0	C	T	bias_e_value=4518360	bias_p_value=0.973439	consensus_score=75.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.778552	major_base=T	major_cov=10/17	major_frequency=9.310e-01	minor_base=G	minor_cov=1/1	new_cov=10/17	polymorphism_frequency=9.310e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	1521	.	NC_000913	4540111	0	A	G	bias_e_value=3138480	bias_p_value=0.676156	consensus_score=48.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.312647	major_base=G	major_cov=11/8	major_frequency=8.636e-01	minor_base=A	minor_cov=2/1	new_cov=11/8	polymorphism_frequency=8.636e-01	polymorphism_score=0.9	prediction=consensus	ref_cov=2/1	total_cov=13/9
RA	1522	.	NC_000913	4540114	0	A	T	bias_e_value=1135270	bias_p_value=0.244583	consensus_score=36.1	fisher_strand_p_value=0.617711	frequency=1	ks_quality_p_value=0.106363	major_base=T	major_cov=11/6	major_frequency=8.095e-01	minor_base=A	minor_cov=2/2	new_cov=11/6	polymorphism_frequency=8.095e-01	polymorphism_score=6.5	prediction=consensus	ref_cov=2/2	total_cov=13/9
RA	1523	.	NC_000913	4540431	0	T	C	consensus_score=57.0	frequency=1	major_base=C	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	1524	.	NC_000913	4542683	0	T	.	bias_e_value=4355950	bias_p_value=0.938448	consensus_score=41.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.67032	major_base=.	major_cov=13/3	major_frequency=8.000e-01	minor_base=T	minor_cov=3/1	new_cov=13/3	polymorphism_frequency=8.000e-01	polymorphism_score=13.3	prediction=consensus	ref_cov=3/1	total_cov=16/4
RA	1525	.	NC_000913	4542692	1	.	A	bias_e_value=2141200	bias_p_value=0.461301	consensus_score=48.8	fisher_strand_p_value=0.508772	frequency=1	ks_quality_p_value=0.323223	major_base=A	major_cov=14/3	major_frequency=8.500e-01	minor_base=.	minor_cov=2/1	new_cov=14/3	polymorphism_frequency=8.500e-01	polymorphism_score=5.2	prediction=consensus	ref_cov=2/1	total_cov=16/4
RA	1526	.	NC_000913	4543047	0	T	G	bias_e_value=2814960	bias_p_value=0.606456	consensus_score=42.6	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=0.624635	major_base=G	major_cov=10/6	major_frequency=9.412e-01	minor_base=T	minor_cov=0/1	new_cov=10/6	polymorphism_frequency=9.412e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=10/7
RA	1527	.	NC_000913	4544464	0	A	T	bias_e_value=3841560	bias_p_value=0.827628	consensus_score=110.7	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/20	major_frequency=9.737e-01	minor_base=C	minor_cov=1/0	new_cov=17/20	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/20
RA	1528	.	NC_000913	4546272	0	A	C	bias_e_value=3378170	bias_p_value=0.727794	consensus_score=65.0	fisher_strand_p_value=0.36	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=8/16	major_frequency=9.600e-01	minor_base=A	minor_cov=1/0	new_cov=8/16	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=9/16
RA	1529	.	NC_000913	4549223	0	T	G	bias_e_value=3992540	bias_p_value=0.860155	consensus_score=42.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.520173	major_base=G	major_cov=7/10	major_frequency=9.444e-01	minor_base=T	minor_cov=0/1	new_cov=7/10	polymorphism_frequency=9.444e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=7/11
RA	1530	.	NC_000913	4553609	0	T	A	bias_e_value=4522980	bias_p_value=0.974434	consensus_score=117.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.782568	major_base=A	major_cov=19/22	major_frequency=8.913e-01	minor_base=T	minor_cov=2/3	new_cov=19/22	polymorphism_frequency=8.913e-01	polymorphism_score=5.4	prediction=consensus	ref_cov=2/3	total_cov=22/25
RA	1531	.	NC_000913	4556917	0	A	G	bias_e_value=3603460	bias_p_value=0.776332	consensus_score=52.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.410872	major_base=G	major_cov=12/7	major_frequency=9.500e-01	minor_base=A	minor_cov=1/0	new_cov=12/7	polymorphism_frequency=9.500e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=13/7
RA	1532	.	NC_000913	4560309	0	T	A	bias_e_value=2713290	bias_p_value=0.584552	consensus_score=77.0	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.498966	major_base=A	major_cov=15/14	major_frequency=9.355e-01	minor_base=T	minor_cov=0/2	new_cov=15/14	polymorphism_frequency=9.355e-01	polymorphism_score=-0.5	prediction=consensus	ref_cov=0/2	total_cov=15/16
RA	1533	.	NC_000913	4563567	0	T	C	bias_e_value=2723350	bias_p_value=0.58672	consensus_score=47.0	fisher_strand_p_value=0.494737	frequency=1	ks_quality_p_value=0.491098	major_base=C	major_cov=8/10	major_frequency=9.000e-01	minor_base=T	minor_cov=0/2	new_cov=8/10	polymorphism_frequency=9.000e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=0/2	total_cov=9/12
RA	1534	.	NC_000913	4564141	0	T	G	bias_e_value=3293190	bias_p_value=0.709486	consensus_score=69.8	fisher_strand_p_value=0.599555	frequency=1	ks_quality_p_value=0.571262	major_base=G	major_cov=15/13	major_frequency=9.032e-01	minor_base=T	minor_cov=1/2	new_cov=15/13	polymorphism_frequency=9.032e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/2	total_cov=16/15
RA	1535	.	NC_000913	4567272	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=65.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/7	major_frequency=9.231e-01	minor_base=C	minor_cov=2/0	new_cov=17/7	polymorphism_frequency=9.231e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=19/7
RA	1536	.	NC_000913	4569307	0	T	C	bias_e_value=2229500	bias_p_value=0.480324	consensus_score=51.0	fisher_strand_p_value=0.576087	frequency=1	ks_quality_p_value=0.304076	major_base=C	major_cov=9/12	major_frequency=8.750e-01	minor_base=T	minor_cov=2/1	new_cov=9/12	polymorphism_frequency=8.750e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=2/1	total_cov=11/13
RA	1537	.	NC_000913	4591930	0	G	C	bias_e_value=886028	bias_p_value=0.190886	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.9	fisher_strand_p_value=0.191671	frequency=7.586e-01	ks_quality_p_value=0.245517	major_base=C	major_cov=14/8	major_frequency=7.586e-01	minor_base=G	minor_cov=2/5	new_cov=14/8	polymorphism_frequency=7.586e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=2/5	total_cov=16/13
RA	1538	.	NC_000913	4592082	0	G	A	bias_e_value=3223720	bias_p_value=0.69452	consensus_score=45.4	fisher_strand_p_value=0.628019	frequency=1	ks_quality_p_value=0.523542	major_base=A	major_cov=13/9	major_frequency=8.148e-01	minor_base=G	minor_cov=2/3	new_cov=13/9	polymorphism_frequency=8.148e-01	polymorphism_score=6.0	prediction=consensus	ref_cov=2/3	total_cov=16/13
RA	1539	.	NC_000913	4592188	0	C	T	bias_e_value=3428640	bias_p_value=0.738669	consensus_score=62.7	fisher_strand_p_value=0.612917	frequency=1	ks_quality_p_value=0.604977	major_base=T	major_cov=12/14	major_frequency=8.667e-01	minor_base=C	minor_cov=1/3	new_cov=12/14	polymorphism_frequency=8.667e-01	polymorphism_score=3.5	prediction=consensus	ref_cov=1/3	total_cov=13/17
RA	1540	.	NC_000913	4595570	0	A	.	bias_e_value=4601070	bias_p_value=0.991257	consensus_score=54.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.870712	major_base=.	major_cov=10/9	major_frequency=8.261e-01	minor_base=A	minor_cov=2/2	new_cov=10/9	polymorphism_frequency=8.261e-01	polymorphism_score=12.8	prediction=consensus	ref_cov=2/2	total_cov=12/11
RA	1541	.	NC_000913	4602089	0	C	T	bias_e_value=2111440	bias_p_value=0.454889	consensus_score=75.8	fisher_strand_p_value=0.292399	frequency=1	ks_quality_p_value=0.550331	major_base=T	major_cov=19/12	major_frequency=8.857e-01	minor_base=C	minor_cov=1/3	new_cov=19/12	polymorphism_frequency=8.857e-01	polymorphism_score=2.3	prediction=consensus	ref_cov=1/3	total_cov=20/15
RA	1542	.	NC_000913	4605702	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=72.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=15/10	major_frequency=9.259e-01	minor_base=A	minor_cov=1/1	new_cov=15/10	polymorphism_frequency=9.259e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/1	total_cov=16/11
RA	1543	.	NC_000913	4605791	0	A	G	bias_e_value=2904940	bias_p_value=0.625842	consensus_score=95.3	fisher_strand_p_value=0.393939	frequency=1	ks_quality_p_value=0.689898	major_base=G	major_cov=20/12	major_frequency=9.697e-01	minor_base=A	minor_cov=0/1	new_cov=20/12	polymorphism_frequency=9.697e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=20/13
RA	1544	.	NC_000913	4614170	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=77.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/14	major_frequency=8.824e-01	minor_base=C	minor_cov=2/2	new_cov=16/14	polymorphism_frequency=8.824e-01	polymorphism_score=0.9	prediction=consensus	ref_cov=2/2	total_cov=18/16
RA	1545	.	NC_000913	4616022	0	T	C	bias_e_value=3739580	bias_p_value=0.805656	consensus_score=90.3	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=0.917062	major_base=C	major_cov=16/17	major_frequency=9.429e-01	minor_base=A	minor_cov=2/0	new_cov=16/17	polymorphism_frequency=9.429e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=19/17
RA	1546	.	NC_000913	4616073	0	T	C	bias_e_value=4034160	bias_p_value=0.869122	consensus_score=86.4	fisher_strand_p_value=0.547287	frequency=1	ks_quality_p_value=0.976049	major_base=C	major_cov=11/19	major_frequency=9.091e-01	minor_base=T	minor_cov=2/1	new_cov=11/19	polymorphism_frequency=9.091e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=2/1	total_cov=13/20
RA	1547	.	NC_000913	4616514	0	T	G	bias_e_value=3327160	bias_p_value=0.716804	consensus_score=97.8	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=0.719347	major_base=G	major_cov=16/18	major_frequency=9.714e-01	minor_base=T	minor_cov=1/0	new_cov=16/18	polymorphism_frequency=9.714e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=17/18
RA	1548	.	NC_000913	4616535	0	A	G	bias_e_value=2806840	bias_p_value=0.604706	consensus_score=92.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.255917	major_base=G	major_cov=15/16	major_frequency=9.688e-01	minor_base=A	minor_cov=1/0	new_cov=15/16	polymorphism_frequency=9.688e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=16/17
RA	1549	.	NC_000913	4616648	0	C	T	bias_e_value=4388430	bias_p_value=0.945446	consensus_score=66.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.688419	major_base=T	major_cov=14/13	major_frequency=8.710e-01	minor_base=C	minor_cov=2/2	new_cov=14/13	polymorphism_frequency=8.710e-01	polymorphism_score=3.6	prediction=consensus	ref_cov=2/2	total_cov=16/15
RA	1550	.	NC_000913	4616682	0	C	T	bias_e_value=2269360	bias_p_value=0.488911	consensus_score=66.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.180145	major_base=T	major_cov=15/14	major_frequency=8.529e-01	minor_base=C	minor_cov=3/2	new_cov=15/14	polymorphism_frequency=8.529e-01	polymorphism_score=6.6	prediction=consensus	ref_cov=3/2	total_cov=18/16
RA	1551	.	NC_000913	4617053	0	G	C	bias_e_value=2711820	bias_p_value=0.584236	consensus_score=87.3	fisher_strand_p_value=0.285714	frequency=1	ks_quality_p_value=0.844245	major_base=C	major_cov=7/20	major_frequency=9.643e-01	minor_base=G	minor_cov=1/0	new_cov=7/20	polymorphism_frequency=9.643e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/0	total_cov=8/20
RA	1552	.	NC_000913	4617138	0	C	A	bias_e_value=4437060	bias_p_value=0.955923	consensus_score=81.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.71818	major_base=A	major_cov=12/17	major_frequency=9.667e-01	minor_base=C	minor_cov=0/1	new_cov=12/17	polymorphism_frequency=9.667e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=12/18
RA	1553	.	NC_000913	4617238	0	G	A	bias_e_value=2101480	bias_p_value=0.452743	consensus_score=67.3	fisher_strand_p_value=0.169231	frequency=1	ks_quality_p_value=0.94394	major_base=A	major_cov=15/9	major_frequency=9.231e-01	minor_base=G	minor_cov=0/2	new_cov=15/9	polymorphism_frequency=9.231e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/2	total_cov=16/11
RA	1554	.	NC_000913	4617409	0	G	A	bias_e_value=2493800	bias_p_value=0.537265	consensus_score=102.3	fisher_strand_p_value=0.27027	frequency=1	ks_quality_p_value=0.775883	major_base=A	major_cov=27/9	major_frequency=9.730e-01	minor_base=G	minor_cov=0/1	new_cov=27/9	polymorphism_frequency=9.730e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=27/10
RA	1555	.	NC_000913	4617412	0	C	T	consensus_score=88.9	frequency=1	major_base=T	major_cov=27/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/9
RA	1556	.	NC_000913	4617415	0	C	T	bias_e_value=2814580	bias_p_value=0.606375	consensus_score=93.1	fisher_strand_p_value=0.257143	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/8	major_frequency=9.714e-01	minor_base=G	minor_cov=0/1	new_cov=26/8	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=27/9
RA	1557	.	NC_000913	4617436	0	T	C	consensus_score=99.6	frequency=1	major_base=C	major_cov=26/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/9
RA	1558	.	NC_000913	4617499	0	T	A	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=77.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997704	major_base=A	major_cov=18/11	major_frequency=9.667e-01	minor_base=C	minor_cov=1/0	new_cov=18/11	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/11
RA	1559	.	NC_000913	4617532	0	C	T	consensus_score=76.2	frequency=1	major_base=T	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	1560	.	NC_000913	4617565	0	C	T	bias_e_value=4641620	bias_p_value=0.999992	consensus_score=63.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996055	major_base=T	major_cov=10/12	major_frequency=9.565e-01	minor_base=G	minor_cov=0/1	new_cov=10/12	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	1561	.	NC_000913	4617574	0	C	A	consensus_score=66.2	frequency=1	major_base=A	major_cov=10/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	1562	.	NC_000913	4617616	0	T	C	consensus_score=76.7	frequency=1	major_base=C	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	1563	.	NC_000913	4617631	0	T	G	bias_e_value=1979320	bias_p_value=0.426427	consensus_score=75.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.145741	major_base=G	major_cov=12/14	major_frequency=9.630e-01	minor_base=.	minor_cov=0/1	new_cov=12/14	polymorphism_frequency=9.630e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	1564	.	NC_000913	4617928	0	G	A	bias_e_value=3993210	bias_p_value=0.860298	consensus_score=109.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.520393	major_base=A	major_cov=21/17	major_frequency=9.744e-01	minor_base=G	minor_cov=1/0	new_cov=21/17	polymorphism_frequency=9.744e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=23/17
RA	1565	.	NC_000913	4617976	0	T	C	bias_e_value=4564570	bias_p_value=0.983394	consensus_score=108.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.823385	major_base=C	major_cov=21/17	major_frequency=9.744e-01	minor_base=T	minor_cov=1/0	new_cov=21/17	polymorphism_frequency=9.744e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=23/17
RA	1566	.	NC_000913	4618030	0	C	T	bias_e_value=4628230	bias_p_value=0.997108	consensus_score=114.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.924919	major_base=T	major_cov=24/16	major_frequency=9.756e-01	minor_base=G	minor_cov=1/0	new_cov=24/16	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/16
RA	1567	.	NC_000913	4618055	0	C	T	bias_e_value=4634460	bias_p_value=0.99845	consensus_score=136.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.944842	major_base=T	major_cov=27/20	major_frequency=9.792e-01	minor_base=C	minor_cov=1/0	new_cov=27/20	polymorphism_frequency=9.792e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=1/0	total_cov=28/20
RA	1568	.	NC_000913	4618069	0	T	C	bias_e_value=4630240	bias_p_value=0.997542	consensus_score=129.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.930709	major_base=C	major_cov=26/21	major_frequency=9.792e-01	minor_base=T	minor_cov=1/0	new_cov=26/21	polymorphism_frequency=9.792e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=27/21
RA	1569	.	NC_000913	4618075	0	C	T	bias_e_value=4171140	bias_p_value=0.898633	consensus_score=119.0	fisher_strand_p_value=0.58498	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/19	major_frequency=9.348e-01	minor_base=G	minor_cov=1/2	new_cov=24/19	polymorphism_frequency=9.348e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=27/21
RA	1570	.	NC_000913	4618276	0	G	A	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=84.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997672	major_base=A	major_cov=14/19	major_frequency=8.462e-01	minor_base=G	minor_cov=3/3	new_cov=14/19	polymorphism_frequency=8.462e-01	polymorphism_score=4.8	prediction=consensus	ref_cov=3/3	total_cov=18/23
RA	1571	.	NC_000913	4618312	0	T	C	bias_e_value=4579290	bias_p_value=0.986565	consensus_score=87.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.840624	major_base=C	major_cov=15/17	major_frequency=8.889e-01	minor_base=T	minor_cov=2/2	new_cov=15/17	polymorphism_frequency=8.889e-01	polymorphism_score=3.3	prediction=consensus	ref_cov=2/2	total_cov=18/19
RA	1572	.	NC_000913	4618483	0	C	T	bias_e_value=3962190	bias_p_value=0.853617	consensus_score=103.8	fisher_strand_p_value=0.704107	frequency=1	ks_quality_p_value=0.724767	major_base=T	major_cov=21/21	major_frequency=8.400e-01	minor_base=C	minor_cov=3/5	new_cov=21/21	polymorphism_frequency=8.400e-01	polymorphism_score=10.6	prediction=consensus	ref_cov=3/5	total_cov=24/26
RA	1573	.	NC_000913	4618489	0	C	T	bias_e_value=2919430	bias_p_value=0.628963	consensus_score=107.8	fisher_strand_p_value=0.423759	frequency=1	ks_quality_p_value=0.647023	major_base=T	major_cov=21/21	major_frequency=8.571e-01	minor_base=C	minor_cov=2/5	new_cov=21/21	polymorphism_frequency=8.571e-01	polymorphism_score=10.6	prediction=consensus	ref_cov=2/5	total_cov=24/26
RA	1574	.	NC_000913	4618702	0	T	C	bias_e_value=3260110	bias_p_value=0.702359	consensus_score=48.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.335911	major_base=C	major_cov=9/13	major_frequency=8.800e-01	minor_base=T	minor_cov=1/2	new_cov=9/13	polymorphism_frequency=8.800e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=1/2	total_cov=11/15
RA	1575	.	NC_000913	4618717	0	T	G	bias_e_value=2282930	bias_p_value=0.491835	consensus_score=42.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.181855	major_base=G	major_cov=11/11	major_frequency=9.167e-01	minor_base=T	minor_cov=1/1	new_cov=11/11	polymorphism_frequency=9.167e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/1	total_cov=12/12
RA	1576	.	NC_000913	4618804	0	T	G	bias_e_value=3286740	bias_p_value=0.708098	consensus_score=73.4	fisher_strand_p_value=0.498575	frequency=1	ks_quality_p_value=0.684368	major_base=G	major_cov=14/11	major_frequency=9.259e-01	minor_base=T	minor_cov=2/0	new_cov=14/11	polymorphism_frequency=9.259e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=2/0	total_cov=16/11
RA	1577	.	NC_000913	4619026	0	A	G	bias_e_value=4397390	bias_p_value=0.947375	consensus_score=117.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.693641	major_base=G	major_cov=19/23	major_frequency=9.545e-01	minor_base=A	minor_cov=1/1	new_cov=19/23	polymorphism_frequency=9.545e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=20/25
RA	1578	.	NC_000913	4619080	0	G	T	bias_e_value=4639180	bias_p_value=0.999468	consensus_score=107.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.96757	major_base=T	major_cov=17/22	major_frequency=9.286e-01	minor_base=G	minor_cov=1/2	new_cov=17/22	polymorphism_frequency=9.286e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/2	total_cov=18/24
RA	1579	.	NC_000913	4619131	0	G	A	bias_e_value=2494800	bias_p_value=0.537481	consensus_score=95.4	fisher_strand_p_value=0.277735	frequency=1	ks_quality_p_value=0.755527	major_base=A	major_cov=11/23	major_frequency=9.189e-01	minor_base=G	minor_cov=2/1	new_cov=11/23	polymorphism_frequency=9.189e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=2/1	total_cov=13/24
RA	1580	.	NC_000913	4619134	0	G	A	bias_e_value=4211430	bias_p_value=0.907313	consensus_score=85.5	fisher_strand_p_value=0.601605	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=11/22	major_frequency=8.919e-01	minor_base=G	minor_cov=2/2	new_cov=11/22	polymorphism_frequency=8.919e-01	polymorphism_score=0.9	prediction=consensus	ref_cov=2/2	total_cov=13/24
RA	1581	.	NC_000913	4619197	0	G	A	bias_e_value=3050730	bias_p_value=0.657252	consensus_score=73.7	fisher_strand_p_value=0.64181	frequency=1	ks_quality_p_value=0.462352	major_base=A	major_cov=13/17	major_frequency=8.571e-01	minor_base=G	minor_cov=3/2	new_cov=13/17	polymorphism_frequency=8.571e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=3/2	total_cov=17/19
RA	1582	.	NC_000913	4619335	0	A	T	bias_e_value=3959180	bias_p_value=0.852969	consensus_score=77.3	fisher_strand_p_value=0.561217	frequency=1	ks_quality_p_value=0.907584	major_base=T	major_cov=12/18	major_frequency=9.091e-01	minor_base=A	minor_cov=2/1	new_cov=12/18	polymorphism_frequency=9.091e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=2/1	total_cov=14/19
RA	1583	.	NC_000913	4619338	0	C	T	bias_e_value=3006990	bias_p_value=0.647828	consensus_score=72.0	fisher_strand_p_value=0.551815	frequency=1	ks_quality_p_value=0.523849	major_base=T	major_cov=11/18	major_frequency=9.062e-01	minor_base=C	minor_cov=2/1	new_cov=11/18	polymorphism_frequency=9.062e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=2/1	total_cov=14/19
RA	1584	.	NC_000913	4619359	0	C	T	bias_e_value=2728400	bias_p_value=0.587807	consensus_score=83.3	fisher_strand_p_value=0.265546	frequency=1	ks_quality_p_value=0.917856	major_base=T	major_cov=10/22	major_frequency=9.143e-01	minor_base=C	minor_cov=2/1	new_cov=10/22	polymorphism_frequency=9.143e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=2/1	total_cov=12/23
RA	1585	.	NC_000913	4619393	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=80.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/23	major_frequency=9.394e-01	minor_base=G	minor_cov=0/2	new_cov=8/23	polymorphism_frequency=9.394e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=9/26
RA	1586	.	NC_000913	4619454	0	A	G	bias_e_value=2252960	bias_p_value=0.48538	consensus_score=89.3	fisher_strand_p_value=0.197774	frequency=1	ks_quality_p_value=0.900476	major_base=G	major_cov=6/27	major_frequency=8.919e-01	minor_base=A	minor_cov=2/2	new_cov=6/27	polymorphism_frequency=8.919e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=2/2	total_cov=8/29
RA	1587	.	NC_000913	4619917	0	T	C	bias_e_value=3410860	bias_p_value=0.734837	consensus_score=44.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.366959	major_base=C	major_cov=13/6	major_frequency=9.048e-01	minor_base=T	minor_cov=1/1	new_cov=13/6	polymorphism_frequency=9.048e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=15/7
RA	1588	.	NC_000913	4620067	0	A	G	bias_e_value=4442490	bias_p_value=0.957093	consensus_score=51.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.721742	major_base=G	major_cov=14/6	major_frequency=8.696e-01	minor_base=A	minor_cov=2/1	new_cov=14/6	polymorphism_frequency=8.696e-01	polymorphism_score=0.7	prediction=consensus	ref_cov=2/1	total_cov=17/7
RA	1589	.	NC_000913	4620145	0	T	C	bias_e_value=2176410	bias_p_value=0.468888	consensus_score=89.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.168679	major_base=C	major_cov=18/11	major_frequency=9.355e-01	minor_base=T	minor_cov=1/1	new_cov=18/11	polymorphism_frequency=9.355e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=1/1	total_cov=19/12
RA	1590	.	NC_000913	4620150	0	A	G	bias_e_value=1528920	bias_p_value=0.32939	consensus_score=71.1	fisher_strand_p_value=0.543493	frequency=1	ks_quality_p_value=0.183302	major_base=G	major_cov=18/10	major_frequency=9.032e-01	minor_base=A	minor_cov=1/2	new_cov=18/10	polymorphism_frequency=9.032e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=1/2	total_cov=19/12
RA	1591	.	NC_000913	4620154	0	T	C	bias_e_value=3126730	bias_p_value=0.673625	consensus_score=81.3	fisher_strand_p_value=0.543493	frequency=1	ks_quality_p_value=0.571262	major_base=C	major_cov=18/10	major_frequency=9.032e-01	minor_base=T	minor_cov=1/2	new_cov=18/10	polymorphism_frequency=9.032e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=1/2	total_cov=19/12
RA	1592	.	NC_000913	4620157	0	C	T	bias_e_value=3043780	bias_p_value=0.655754	consensus_score=80.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.295511	major_base=T	major_cov=18/10	major_frequency=9.333e-01	minor_base=C	minor_cov=1/1	new_cov=18/10	polymorphism_frequency=9.333e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=19/12
RA	1593	.	NC_000913	4620160	0	T	C	bias_e_value=4167940	bias_p_value=0.897943	consensus_score=87.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.583695	major_base=C	major_cov=18/11	major_frequency=9.355e-01	minor_base=T	minor_cov=1/1	new_cov=18/11	polymorphism_frequency=9.355e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/1	total_cov=19/12
RA	1594	.	NC_000913	4620223	0	T	C	bias_e_value=3591110	bias_p_value=0.773671	consensus_score=81.3	fisher_strand_p_value=0.601173	frequency=1	ks_quality_p_value=0.678495	major_base=C	major_cov=16/14	major_frequency=9.091e-01	minor_base=T	minor_cov=1/2	new_cov=16/14	polymorphism_frequency=9.091e-01	polymorphism_score=-0.6	prediction=consensus	ref_cov=1/2	total_cov=19/16
RA	1595	.	NC_000913	4620256	0	C	T	bias_e_value=4548530	bias_p_value=0.979939	consensus_score=81.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.806498	major_base=T	major_cov=15/15	major_frequency=9.677e-01	minor_base=C	minor_cov=0/1	new_cov=15/15	polymorphism_frequency=9.677e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=16/16
RA	1596	.	NC_000913	4620358	0	C	T	bias_e_value=4641460	bias_p_value=0.999958	consensus_score=86.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990847	major_base=T	major_cov=15/14	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=15/14	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	1597	.	NC_000913	4620385	0	G	A	bias_e_value=3877250	bias_p_value=0.835317	consensus_score=75.0	fisher_strand_p_value=0.484127	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/13	major_frequency=9.286e-01	minor_base=C	minor_cov=2/0	new_cov=13/13	polymorphism_frequency=9.286e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=15/14
RA	1598	.	NC_000913	4620415	0	A	G	bias_e_value=3879680	bias_p_value=0.835839	consensus_score=102.8	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=17/15	major_frequency=9.697e-01	minor_base=T	minor_cov=0/1	new_cov=17/15	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	1599	.	NC_000913	4620427	0	G	A	bias_e_value=3824330	bias_p_value=0.823915	consensus_score=94.7	fisher_strand_p_value=0.46875	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/14	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=17/14	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	1600	.	NC_000913	4620559	0	C	T	bias_e_value=3943900	bias_p_value=0.849676	consensus_score=90.6	fisher_strand_p_value=0.504505	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/20	major_frequency=9.459e-01	minor_base=G	minor_cov=0/2	new_cov=15/20	polymorphism_frequency=9.459e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	1601	.	NC_000913	4620571	0	A	G	consensus_score=100.1	frequency=1	major_base=G	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	1602	.	NC_000913	4620637	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=93.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/23	major_frequency=9.714e-01	minor_base=C	minor_cov=0/1	new_cov=11/23	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=11/24
RA	1603	.	NC_000913	4620652	0	C	T	bias_e_value=4189200	bias_p_value=0.902523	consensus_score=71.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.592321	major_base=T	major_cov=9/20	major_frequency=9.062e-01	minor_base=C	minor_cov=1/2	new_cov=9/20	polymorphism_frequency=9.062e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=1/2	total_cov=10/22
RA	1604	.	NC_000913	4620706	0	A	T	bias_e_value=3572810	bias_p_value=0.769728	consensus_score=68.9	fisher_strand_p_value=0.612532	frequency=1	ks_quality_p_value=0.658777	major_base=T	major_cov=7/19	major_frequency=8.387e-01	minor_base=A	minor_cov=2/3	new_cov=7/19	polymorphism_frequency=8.387e-01	polymorphism_score=7.1	prediction=consensus	ref_cov=2/3	total_cov=9/22
RA	1605	.	NC_000913	4620709	0	T	C	bias_e_value=2245290	bias_p_value=0.483726	consensus_score=55.9	fisher_strand_p_value=0.612532	frequency=1	ks_quality_p_value=0.289183	major_base=C	major_cov=7/19	major_frequency=8.387e-01	minor_base=T	minor_cov=2/3	new_cov=7/19	polymorphism_frequency=8.387e-01	polymorphism_score=6.6	prediction=consensus	ref_cov=2/3	total_cov=9/22
RA	1606	.	NC_000913	4620742	0	T	C	bias_e_value=278569	bias_p_value=0.060015	consensus_score=60.4	fisher_strand_p_value=0.240602	frequency=1	ks_quality_p_value=0.0451723	major_base=C	major_cov=4/22	major_frequency=8.387e-01	minor_base=T	minor_cov=2/3	new_cov=4/22	polymorphism_frequency=8.387e-01	polymorphism_score=4.3	prediction=consensus	ref_cov=2/3	total_cov=7/25
RA	1607	.	NC_000913	4620763	0	C	T	bias_e_value=2675300	bias_p_value=0.576369	consensus_score=47.0	fisher_strand_p_value=0.235725	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=3/18	major_frequency=8.077e-01	minor_base=C	minor_cov=2/3	new_cov=3/18	polymorphism_frequency=8.077e-01	polymorphism_score=4.6	prediction=consensus	ref_cov=2/3	total_cov=5/21
RA	1608	.	NC_000913	4620766	0	C	T	bias_e_value=2421690	bias_p_value=0.521731	consensus_score=40.4	fisher_strand_p_value=0.235725	frequency=1	ks_quality_p_value=0.848033	major_base=T	major_cov=3/18	major_frequency=8.077e-01	minor_base=C	minor_cov=2/3	new_cov=3/18	polymorphism_frequency=8.077e-01	polymorphism_score=7.4	prediction=consensus	ref_cov=2/3	total_cov=5/21
RA	1609	.	NC_000913	4621236	0	C	T	consensus_score=51.6	frequency=1	major_base=T	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	1610	.	NC_000913	4621278	0	C	T	consensus_score=63.0	frequency=1	major_base=T	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	1611	.	NC_000913	4621296	0	A	G	bias_e_value=3850220	bias_p_value=0.829494	consensus_score=63.9	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=11/9	major_frequency=9.524e-01	minor_base=T	minor_cov=0/1	new_cov=11/9	polymorphism_frequency=9.524e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	1612	.	NC_000913	4621302	0	T	C	consensus_score=62.8	frequency=1	major_base=C	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	1613	.	NC_000913	4621305	0	A	G	consensus_score=62.7	frequency=1	major_base=G	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	1614	.	NC_000913	4621321	0	A	G	consensus_score=70.9	frequency=1	major_base=G	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	1615	.	NC_000913	4621410	0	T	C	consensus_score=93.8	frequency=1	major_base=C	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	1616	.	NC_000913	4621458	0	A	G	consensus_score=76.6	frequency=1	major_base=G	major_cov=11/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/16
RA	1617	.	NC_000913	4621491	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=72.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=10/14	major_frequency=9.600e-01	minor_base=T	minor_cov=0/1	new_cov=10/14	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	1618	.	NC_000913	4621542	0	T	C	consensus_score=45.7	frequency=1	major_base=C	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	1619	.	NC_000913	4621616	0	C	A	consensus_score=21.0	frequency=1	major_base=A	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	1620	.	NC_000913	4621624	0	T	A	consensus_score=17.3	frequency=1	major_base=A	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	1621	.	NC_000913	4621625	0	T	C	consensus_score=14.6	frequency=1	major_base=C	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	1622	.	NC_000913	4621627	0	C	T	consensus_score=15.1	frequency=1	major_base=T	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	1623	.	NC_000913	4621629	0	T	G	consensus_score=17.5	frequency=1	major_base=G	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	1624	.	NC_000913	4621633	0	G	T	consensus_score=17.9	frequency=1	major_base=T	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	1625	.	NC_000913	4621644	0	G	A	consensus_score=16.9	frequency=1	major_base=A	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	1626	.	NC_000913	4623336	0	G	C	bias_e_value=2353020	bias_p_value=0.506936	consensus_score=83.0	fisher_strand_p_value=0.315453	frequency=1	ks_quality_p_value=0.604977	major_base=C	major_cov=15/11	major_frequency=8.667e-01	minor_base=G	minor_cov=1/3	new_cov=15/11	polymorphism_frequency=8.667e-01	polymorphism_score=4.3	prediction=consensus	ref_cov=1/3	total_cov=16/14
RA	1627	.	NC_000913	4623404	0	G	A	bias_e_value=1532080	bias_p_value=0.330072	consensus_score=83.1	fisher_strand_p_value=0.147727	frequency=1	ks_quality_p_value=0.676376	major_base=A	major_cov=20/11	major_frequency=9.394e-01	minor_base=G	minor_cov=0/2	new_cov=20/11	polymorphism_frequency=9.394e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/2	total_cov=20/13
RA	1628	.	NC_000913	4623448	0	T	C	bias_e_value=2645480	bias_p_value=0.569943	consensus_score=75.9	fisher_strand_p_value=0.517241	frequency=1	ks_quality_p_value=0.447194	major_base=C	major_cov=20/8	major_frequency=9.333e-01	minor_base=T	minor_cov=1/1	new_cov=20/8	polymorphism_frequency=9.333e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=21/9
RA	1629	.	NC_000913	4623470	0	C	T	bias_e_value=1053920	bias_p_value=0.227057	consensus_score=63.4	fisher_strand_p_value=0.473846	frequency=1	ks_quality_p_value=0.125315	major_base=T	major_cov=18/6	major_frequency=9.231e-01	minor_base=C	minor_cov=1/1	new_cov=18/6	polymorphism_frequency=9.231e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/1	total_cov=19/8
RA	1630	.	NC_000913	4623473	0	G	A	bias_e_value=1644190	bias_p_value=0.354225	consensus_score=73.0	fisher_strand_p_value=0.269231	frequency=1	ks_quality_p_value=0.410972	major_base=A	major_cov=19/6	major_frequency=9.615e-01	minor_base=G	minor_cov=0/1	new_cov=19/6	polymorphism_frequency=9.615e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=19/8
RA	1631	.	NC_000913	4623502	0	C	T	bias_e_value=2923840	bias_p_value=0.629914	consensus_score=72.1	fisher_strand_p_value=0.401709	frequency=1	ks_quality_p_value=0.684368	major_base=T	major_cov=20/5	major_frequency=9.259e-01	minor_base=C	minor_cov=1/1	new_cov=20/5	polymorphism_frequency=9.259e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=21/8
RA	1632	.	NC_000913	4623544	0	A	G	bias_e_value=3591880	bias_p_value=0.773837	consensus_score=69.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.408078	major_base=G	major_cov=20/7	major_frequency=9.000e-01	minor_base=A	minor_cov=2/1	new_cov=20/7	polymorphism_frequency=9.000e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=2/1	total_cov=22/8
RA	1633	.	NC_000913	4623575	0	T	C	bias_e_value=2489040	bias_p_value=0.53624	consensus_score=60.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.209043	major_base=C	major_cov=17/6	major_frequency=9.200e-01	minor_base=T	minor_cov=2/0	new_cov=17/6	polymorphism_frequency=9.200e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=2/0	total_cov=19/7
RA	1634	.	NC_000913	4623578	0	C	T	bias_e_value=2539250	bias_p_value=0.547058	consensus_score=58.9	fisher_strand_p_value=0.545299	frequency=1	ks_quality_p_value=0.396164	major_base=T	major_cov=17/7	major_frequency=8.889e-01	minor_base=C	minor_cov=3/0	new_cov=17/7	polymorphism_frequency=8.889e-01	polymorphism_score=0.7	prediction=consensus	ref_cov=3/0	total_cov=20/7
RA	1635	.	NC_000913	4623581	0	C	G	bias_e_value=3218990	bias_p_value=0.693501	consensus_score=57.3	fisher_strand_p_value=0.542475	frequency=1	ks_quality_p_value=0.604414	major_base=G	major_cov=16/6	major_frequency=8.462e-01	minor_base=C	minor_cov=4/0	new_cov=16/6	polymorphism_frequency=8.462e-01	polymorphism_score=4.6	prediction=consensus	ref_cov=4/0	total_cov=20/7
RA	1636	.	NC_000913	4623641	0	G	A	bias_e_value=1168500	bias_p_value=0.251743	consensus_score=55.2	fisher_strand_p_value=0.276789	frequency=1	ks_quality_p_value=0.246942	major_base=A	major_cov=14/8	major_frequency=8.462e-01	minor_base=G	minor_cov=4/0	new_cov=14/8	polymorphism_frequency=8.462e-01	polymorphism_score=3.6	prediction=consensus	ref_cov=4/0	total_cov=19/8
RA	1637	.	NC_000913	4623656	0	T	C	bias_e_value=2215080	bias_p_value=0.477219	consensus_score=67.7	fisher_strand_p_value=0.276974	frequency=1	ks_quality_p_value=0.626041	major_base=C	major_cov=17/10	major_frequency=8.710e-01	minor_base=T	minor_cov=4/0	new_cov=17/10	polymorphism_frequency=8.710e-01	polymorphism_score=3.2	prediction=consensus	ref_cov=4/0	total_cov=21/10
RA	1638	.	NC_000913	4623680	0	G	A	bias_e_value=1410540	bias_p_value=0.303887	consensus_score=58.5	fisher_strand_p_value=0.267778	frequency=1	ks_quality_p_value=0.331725	major_base=A	major_cov=14/11	major_frequency=8.621e-01	minor_base=G	minor_cov=4/0	new_cov=14/11	polymorphism_frequency=8.621e-01	polymorphism_score=3.4	prediction=consensus	ref_cov=4/0	total_cov=19/11
RA	1639	.	NC_000913	4623707	0	G	T	bias_e_value=4132240	bias_p_value=0.890252	consensus_score=78.1	fisher_strand_p_value=0.627178	frequency=1	ks_quality_p_value=0.908393	major_base=T	major_cov=17/13	major_frequency=8.824e-01	minor_base=G	minor_cov=3/1	new_cov=17/13	polymorphism_frequency=8.824e-01	polymorphism_score=1.4	prediction=consensus	ref_cov=3/1	total_cov=20/14
RA	1640	.	NC_000913	4623732	0	A	G	bias_e_value=2984980	bias_p_value=0.643086	consensus_score=79.0	fisher_strand_p_value=0.618984	frequency=1	ks_quality_p_value=0.460863	major_base=G	major_cov=17/14	major_frequency=8.857e-01	minor_base=A	minor_cov=3/1	new_cov=17/14	polymorphism_frequency=8.857e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=3/1	total_cov=20/16
RA	1641	.	NC_000913	4623758	0	T	C	bias_e_value=2927040	bias_p_value=0.630603	consensus_score=82.0	fisher_strand_p_value=0.348944	frequency=1	ks_quality_p_value=0.789385	major_base=C	major_cov=17/17	major_frequency=8.718e-01	minor_base=T	minor_cov=4/1	new_cov=17/17	polymorphism_frequency=8.718e-01	polymorphism_score=2.7	prediction=consensus	ref_cov=4/1	total_cov=21/18
RA	1642	.	NC_000913	4623782	0	G	A	bias_e_value=4573630	bias_p_value=0.985344	consensus_score=76.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.833753	major_base=A	major_cov=16/17	major_frequency=9.167e-01	minor_base=G	minor_cov=2/1	new_cov=16/17	polymorphism_frequency=9.167e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=2/1	total_cov=19/18
RA	1643	.	NC_000913	4623821	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=109.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=18/18	major_frequency=9.231e-01	minor_base=A	minor_cov=2/1	new_cov=18/18	polymorphism_frequency=9.231e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=2/1	total_cov=20/19
RA	1644	.	NC_000913	4623911	0	C	T	bias_e_value=2179280	bias_p_value=0.469506	consensus_score=92.4	fisher_strand_p_value=0.487302	frequency=1	ks_quality_p_value=0.346864	major_base=T	major_cov=17/17	major_frequency=9.444e-01	minor_base=C	minor_cov=0/2	new_cov=17/17	polymorphism_frequency=9.444e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=0/2	total_cov=17/19
RA	1645	.	NC_000913	4623983	0	T	C	bias_e_value=2866950	bias_p_value=0.617657	consensus_score=105.1	fisher_strand_p_value=0.486486	frequency=1	ks_quality_p_value=0.545853	major_base=C	major_cov=18/17	major_frequency=9.459e-01	minor_base=T	minor_cov=0/2	new_cov=18/17	polymorphism_frequency=9.459e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/2	total_cov=19/19
RA	1646	.	NC_000913	4624037	0	T	C	bias_e_value=2931120	bias_p_value=0.631483	consensus_score=87.9	fisher_strand_p_value=0.495798	frequency=1	ks_quality_p_value=0.556949	major_base=C	major_cov=15/18	major_frequency=9.429e-01	minor_base=T	minor_cov=0/2	new_cov=15/18	polymorphism_frequency=9.429e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=0/2	total_cov=15/21
RA	1647	.	NC_000913	4624055	0	T	C	bias_e_value=2935650	bias_p_value=0.632458	consensus_score=100.6	fisher_strand_p_value=0.525397	frequency=1	ks_quality_p_value=0.527017	major_base=C	major_cov=13/21	major_frequency=9.444e-01	minor_base=T	minor_cov=0/2	new_cov=13/21	polymorphism_frequency=9.444e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/2	total_cov=14/23
RA	1648	.	NC_000913	4624226	0	G	A	bias_e_value=2777670	bias_p_value=0.598423	consensus_score=75.9	fisher_strand_p_value=0.251337	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/17	major_frequency=9.118e-01	minor_base=T	minor_cov=0/3	new_cov=14/17	polymorphism_frequency=9.118e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/20
RA	1649	.	NC_000913	4624262	0	A	G	consensus_score=70.2	frequency=1	major_base=G	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	1650	.	NC_000913	4624277	0	G	A	consensus_score=76.1	frequency=1	major_base=A	major_cov=13/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/15
RA	1651	.	NC_000913	4624355	0	T	C	bias_e_value=3868310	bias_p_value=0.83339	consensus_score=65.9	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=12/13	major_frequency=9.259e-01	minor_base=G	minor_cov=2/0	new_cov=12/13	polymorphism_frequency=9.259e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	1652	.	NC_000913	4624388	0	A	C	consensus_score=67.1	frequency=1	major_base=C	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	1653	.	NC_000913	4624391	0	C	G	consensus_score=69.7	frequency=1	major_base=G	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	1654	.	NC_000913	4624400	0	C	T	bias_e_value=3869670	bias_p_value=0.833684	consensus_score=62.8	fisher_strand_p_value=0.481884	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/11	major_frequency=9.167e-01	minor_base=G	minor_cov=2/0	new_cov=11/11	polymorphism_frequency=9.167e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/0	total_cov=14/11
RA	1655	.	NC_000913	4624430	0	T	C	bias_e_value=4610790	bias_p_value=0.993351	consensus_score=64.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.88692	major_base=C	major_cov=14/10	major_frequency=9.600e-01	minor_base=T	minor_cov=1/0	new_cov=14/10	polymorphism_frequency=9.600e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=15/10
RA	1656	.	NC_000913	4624487	0	T	G	bias_e_value=4485640	bias_p_value=0.96639	consensus_score=86.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.752194	major_base=G	major_cov=17/12	major_frequency=9.355e-01	minor_base=T	minor_cov=1/1	new_cov=17/12	polymorphism_frequency=9.355e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/1	total_cov=18/13
RA	1657	.	NC_000913	4624517	0	A	G	bias_e_value=3370800	bias_p_value=0.726207	consensus_score=95.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.35845	major_base=G	major_cov=20/14	major_frequency=9.189e-01	minor_base=A	minor_cov=2/1	new_cov=20/14	polymorphism_frequency=9.189e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=2/1	total_cov=22/16
RA	1658	.	NC_000913	4624586	0	T	C	bias_e_value=4399120	bias_p_value=0.947749	consensus_score=73.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.694664	major_base=C	major_cov=16/15	major_frequency=9.118e-01	minor_base=T	minor_cov=2/1	new_cov=16/15	polymorphism_frequency=9.118e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=2/1	total_cov=18/16
RA	1659	.	NC_000913	4624622	0	C	T	bias_e_value=3576490	bias_p_value=0.770522	consensus_score=90.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.404397	major_base=T	major_cov=16/16	major_frequency=9.143e-01	minor_base=C	minor_cov=2/1	new_cov=16/16	polymorphism_frequency=9.143e-01	polymorphism_score=0.9	prediction=consensus	ref_cov=2/1	total_cov=18/17
RA	1660	.	NC_000913	4624670	0	C	T	bias_e_value=4638470	bias_p_value=0.999314	consensus_score=84.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.963194	major_base=T	major_cov=13/17	major_frequency=9.375e-01	minor_base=C	minor_cov=1/1	new_cov=13/17	polymorphism_frequency=9.375e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/1	total_cov=14/19
RA	1661	.	NC_000913	4625044	0	A	G	bias_e_value=4640600	bias_p_value=0.999774	consensus_score=96.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.978799	major_base=G	major_cov=16/16	major_frequency=9.143e-01	minor_base=A	minor_cov=1/2	new_cov=16/16	polymorphism_frequency=9.143e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/2	total_cov=17/20
RA	1662	.	NC_000913	4625158	0	A	G	bias_e_value=981365	bias_p_value=0.211426	consensus_score=46.8	fisher_strand_p_value=0.353073	frequency=1	ks_quality_p_value=0.152761	major_base=G	major_cov=8/15	major_frequency=8.214e-01	minor_base=A	minor_cov=3/2	new_cov=8/15	polymorphism_frequency=8.214e-01	polymorphism_score=5.7	prediction=consensus	ref_cov=3/2	total_cov=11/17
RA	1663	.	NC_000913	4625170	0	C	T	bias_e_value=2720810	bias_p_value=0.586172	consensus_score=47.2	fisher_strand_p_value=0.623932	frequency=1	ks_quality_p_value=0.388788	major_base=T	major_cov=9/14	major_frequency=8.214e-01	minor_base=C	minor_cov=3/2	new_cov=9/14	polymorphism_frequency=8.214e-01	polymorphism_score=4.6	prediction=consensus	ref_cov=3/2	total_cov=12/17
RA	1664	.	NC_000913	4625179	0	G	A	bias_e_value=3996290	bias_p_value=0.860962	consensus_score=53.0	fisher_strand_p_value=0.623932	frequency=1	ks_quality_p_value=0.835685	major_base=A	major_cov=9/14	major_frequency=8.214e-01	minor_base=G	minor_cov=3/2	new_cov=9/14	polymorphism_frequency=8.214e-01	polymorphism_score=5.0	prediction=consensus	ref_cov=3/2	total_cov=12/17
RA	1665	.	NC_000913	4625242	0	T	C	bias_e_value=2723610	bias_p_value=0.586776	consensus_score=66.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.243004	major_base=C	major_cov=13/13	major_frequency=8.966e-01	minor_base=T	minor_cov=2/1	new_cov=13/13	polymorphism_frequency=8.966e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=2/1	total_cov=16/14
RA	1666	.	NC_000913	4625248	0	C	T	bias_e_value=3772640	bias_p_value=0.81278	consensus_score=66.8	fisher_strand_p_value=0.606674	frequency=1	ks_quality_p_value=0.748916	major_base=T	major_cov=14/13	major_frequency=8.710e-01	minor_base=C	minor_cov=3/1	new_cov=14/13	polymorphism_frequency=8.710e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=3/1	total_cov=17/15
RA	1667	.	NC_000913	4625377	0	T	C	bias_e_value=4640550	bias_p_value=0.999762	consensus_score=68.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.978262	major_base=C	major_cov=18/8	major_frequency=9.286e-01	minor_base=T	minor_cov=2/0	new_cov=18/8	polymorphism_frequency=9.286e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=2/0	total_cov=20/9
RA	1668	.	NC_000913	4625533	0	C	T	bias_e_value=3716740	bias_p_value=0.800737	consensus_score=39.2	fisher_strand_p_value=0.588933	frequency=1	ks_quality_p_value=0.746092	major_base=T	major_cov=13/6	major_frequency=8.261e-01	minor_base=C	minor_cov=2/2	new_cov=13/6	polymorphism_frequency=8.261e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=2/2	total_cov=15/8
RA	1669	.	NC_000913	4625546	0	C	T	bias_e_value=4013850	bias_p_value=0.864747	consensus_score=46.0	fisher_strand_p_value=0.527273	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/6	major_frequency=8.636e-01	minor_base=C	minor_cov=1/2	new_cov=13/6	polymorphism_frequency=8.636e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/2	total_cov=14/8
RA	1670	.	NC_000913	4626042	0	T	C	bias_e_value=4291490	bias_p_value=0.924561	consensus_score=92.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.637628	major_base=C	major_cov=19/17	major_frequency=9.000e-01	minor_base=T	minor_cov=2/2	new_cov=19/17	polymorphism_frequency=9.000e-01	polymorphism_score=2.4	prediction=consensus	ref_cov=2/2	total_cov=21/19
RA	1671	.	NC_000913	4626245	0	C	T	bias_e_value=4628730	bias_p_value=0.997217	consensus_score=86.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.926322	major_base=T	major_cov=14/17	major_frequency=9.118e-01	minor_base=C	minor_cov=1/2	new_cov=14/17	polymorphism_frequency=9.118e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/2	total_cov=16/20
RA	1672	.	NC_000913	4626247	0	A	G	bias_e_value=3692800	bias_p_value=0.795579	consensus_score=100.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.43318	major_base=G	major_cov=15/19	major_frequency=9.444e-01	minor_base=A	minor_cov=1/1	new_cov=15/19	polymorphism_frequency=9.444e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/1	total_cov=16/20
RA	1673	.	NC_000913	4626391	0	A	G	bias_e_value=3674690	bias_p_value=0.791676	consensus_score=85.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.428545	major_base=G	major_cov=15/19	major_frequency=8.718e-01	minor_base=A	minor_cov=2/3	new_cov=15/19	polymorphism_frequency=8.718e-01	polymorphism_score=3.7	prediction=consensus	ref_cov=2/3	total_cov=17/22
RA	1674	.	NC_000913	4626487	0	T	C	bias_e_value=4298320	bias_p_value=0.926033	consensus_score=80.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.640919	major_base=C	major_cov=15/17	major_frequency=9.412e-01	minor_base=T	minor_cov=1/1	new_cov=15/17	polymorphism_frequency=9.412e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/1	total_cov=16/19
RA	1675	.	NC_000913	4626521	0	T	C	bias_e_value=4630100	bias_p_value=0.99751	consensus_score=68.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.930269	major_base=C	major_cov=11/16	major_frequency=8.710e-01	minor_base=T	minor_cov=2/2	new_cov=11/16	polymorphism_frequency=8.710e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=2/2	total_cov=14/19
RA	1676	.	NC_000913	4626526	0	A	G	bias_e_value=1768220	bias_p_value=0.380947	consensus_score=59.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.123091	major_base=G	major_cov=14/15	major_frequency=9.062e-01	minor_base=A	minor_cov=1/2	new_cov=14/15	polymorphism_frequency=9.062e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=1/2	total_cov=15/18
RA	1677	.	NC_000913	4626565	0	G	T	bias_e_value=3631840	bias_p_value=0.782445	consensus_score=67.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.417811	major_base=T	major_cov=15/15	major_frequency=9.091e-01	minor_base=G	minor_cov=1/2	new_cov=15/15	polymorphism_frequency=9.091e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=1/2	total_cov=16/17
RA	1678	.	NC_000913	4626568	0	G	A	bias_e_value=4035090	bias_p_value=0.869322	consensus_score=62.8	fisher_strand_p_value=0.601173	frequency=1	ks_quality_p_value=0.889092	major_base=A	major_cov=15/14	major_frequency=8.788e-01	minor_base=G	minor_cov=1/3	new_cov=15/14	polymorphism_frequency=8.788e-01	polymorphism_score=2.0	prediction=consensus	ref_cov=1/3	total_cov=16/17
RA	1679	.	NC_000913	4626586	0	T	C	bias_e_value=4565670	bias_p_value=0.98363	consensus_score=82.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.8246	major_base=C	major_cov=15/17	major_frequency=9.143e-01	minor_base=T	minor_cov=1/2	new_cov=15/17	polymorphism_frequency=9.143e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=1/2	total_cov=18/19
RA	1680	.	NC_000913	4626595	0	T	G	bias_e_value=3640180	bias_p_value=0.784242	consensus_score=74.2	fisher_strand_p_value=0.602597	frequency=1	ks_quality_p_value=0.696777	major_base=G	major_cov=16/15	major_frequency=8.857e-01	minor_base=T	minor_cov=1/3	new_cov=16/15	polymorphism_frequency=8.857e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=1/3	total_cov=17/18
RA	1681	.	NC_000913	4626601	0	G	T	bias_e_value=4022730	bias_p_value=0.866659	consensus_score=76.5	fisher_strand_p_value=0.601173	frequency=1	ks_quality_p_value=0.882064	major_base=T	major_cov=16/14	major_frequency=8.824e-01	minor_base=G	minor_cov=1/3	new_cov=16/14	polymorphism_frequency=8.824e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/3	total_cov=17/17
RA	1682	.	NC_000913	4626670	0	C	T	bias_e_value=2379900	bias_p_value=0.512726	consensus_score=98.6	fisher_strand_p_value=0.204204	frequency=1	ks_quality_p_value=0.95178	major_base=T	major_cov=20/15	major_frequency=9.459e-01	minor_base=G	minor_cov=0/2	new_cov=20/15	polymorphism_frequency=9.459e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=20/18
RA	1683	.	NC_000913	4626673	0	G	A	bias_e_value=2550680	bias_p_value=0.54952	consensus_score=98.1	fisher_strand_p_value=0.217639	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/16	major_frequency=9.474e-01	minor_base=G	minor_cov=0/2	new_cov=20/16	polymorphism_frequency=9.474e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/2	total_cov=20/18
RA	1684	.	NC_000913	4626784	0	C	A	bias_e_value=2863740	bias_p_value=0.616966	consensus_score=101.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.26503	major_base=A	major_cov=19/22	major_frequency=9.111e-01	minor_base=C	minor_cov=2/2	new_cov=19/22	polymorphism_frequency=9.111e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=2/2	total_cov=21/24
RA	1685	.	NC_000913	4626802	0	T	C	bias_e_value=412240	bias_p_value=0.0888131	consensus_score=94.0	fisher_strand_p_value=0.622102	frequency=1	ks_quality_p_value=0.0283356	major_base=C	major_cov=18/22	major_frequency=9.091e-01	minor_base=T	minor_cov=1/3	new_cov=18/22	polymorphism_frequency=9.091e-01	polymorphism_score=2.2	prediction=consensus	ref_cov=1/3	total_cov=19/25
RA	1686	.	NC_000913	4626808	0	A	C	bias_e_value=1352560	bias_p_value=0.291397	consensus_score=91.7	fisher_strand_p_value=0.666325	frequency=1	ks_quality_p_value=0.125662	major_base=C	major_cov=19/19	major_frequency=8.636e-01	minor_base=A	minor_cov=2/4	new_cov=19/19	polymorphism_frequency=8.636e-01	polymorphism_score=6.6	prediction=consensus	ref_cov=2/4	total_cov=21/25
RA	1687	.	NC_000913	4626820	0	A	G	bias_e_value=2976730	bias_p_value=0.641307	consensus_score=110.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.283852	major_base=G	major_cov=20/20	major_frequency=9.302e-01	minor_base=A	minor_cov=1/2	new_cov=20/20	polymorphism_frequency=9.302e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=1/2	total_cov=21/22
RA	1688	.	NC_000913	4626838	0	A	G	bias_e_value=4581100	bias_p_value=0.986954	consensus_score=110.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.84288	major_base=G	major_cov=19/21	major_frequency=9.302e-01	minor_base=A	minor_cov=1/2	new_cov=19/21	polymorphism_frequency=9.302e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/2	total_cov=20/23
RA	1689	.	NC_000913	4626839	0	C	T	bias_e_value=3097830	bias_p_value=0.667399	consensus_score=104.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.305192	major_base=T	major_cov=18/21	major_frequency=9.286e-01	minor_base=C	minor_cov=1/2	new_cov=18/21	polymorphism_frequency=9.286e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=1/2	total_cov=20/23
RA	1690	.	NC_000913	4626886	0	C	T	bias_e_value=4576780	bias_p_value=0.986024	consensus_score=97.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.837537	major_base=T	major_cov=17/18	major_frequency=8.974e-01	minor_base=C	minor_cov=2/2	new_cov=17/18	polymorphism_frequency=8.974e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=2/2	total_cov=19/21
RA	1691	.	NC_000913	4626889	0	A	G	bias_e_value=1530270	bias_p_value=0.329681	consensus_score=98.0	fisher_strand_p_value=0.596154	frequency=1	ks_quality_p_value=0.167322	major_base=G	major_cov=17/20	major_frequency=9.250e-01	minor_base=A	minor_cov=2/1	new_cov=17/20	polymorphism_frequency=9.250e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=2/1	total_cov=19/21
RA	1692	.	NC_000913	4626943	0	G	C	bias_e_value=2382550	bias_p_value=0.513298	consensus_score=120.4	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.411047	major_base=C	major_cov=17/20	major_frequency=9.737e-01	minor_base=G	minor_cov=1/0	new_cov=17/20	polymorphism_frequency=9.737e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=18/20
RA	1693	.	NC_000913	4627027	0	T	C	bias_e_value=3725420	bias_p_value=0.802606	consensus_score=110.5	fisher_strand_p_value=0.447368	frequency=1	ks_quality_p_value=0.987279	major_base=C	major_cov=16/21	major_frequency=9.737e-01	minor_base=T	minor_cov=1/0	new_cov=16/21	polymorphism_frequency=9.737e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=1/0	total_cov=18/22
RA	1694	.	NC_000913	4627069	0	C	T	bias_e_value=2120130	bias_p_value=0.456763	consensus_score=103.0	fisher_strand_p_value=0.161943	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/23	major_frequency=9.487e-01	minor_base=C	minor_cov=2/0	new_cov=14/23	polymorphism_frequency=9.487e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=2/0	total_cov=16/24
RA	1695	.	NC_000913	4627084	0	G	A	bias_e_value=4641620	bias_p_value=0.999993	consensus_score=107.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996344	major_base=A	major_cov=17/22	major_frequency=9.286e-01	minor_base=G	minor_cov=1/2	new_cov=17/22	polymorphism_frequency=9.286e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/2	total_cov=18/25
RA	1696	.	NC_000913	4627159	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=106.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/24	major_frequency=9.737e-01	minor_base=C	minor_cov=0/1	new_cov=13/24	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=13/25
RA	1697	.	NC_000913	4627162	0	T	A	bias_e_value=4527200	bias_p_value=0.975343	consensus_score=111.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.786315	major_base=A	major_cov=13/24	major_frequency=9.737e-01	minor_base=T	minor_cov=0/1	new_cov=13/24	polymorphism_frequency=9.737e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=13/25
RA	1698	.	NC_000913	4627213	0	G	A	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=105.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996916	major_base=A	major_cov=11/24	major_frequency=9.459e-01	minor_base=G	minor_cov=0/2	new_cov=11/24	polymorphism_frequency=9.459e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/2	total_cov=11/26
RA	1699	.	NC_000913	4627299	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=110.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=13/23	major_frequency=9.474e-01	minor_base=A	minor_cov=1/1	new_cov=13/23	polymorphism_frequency=9.474e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=1/1	total_cov=14/24
RA	1700	.	NC_000913	4627300	0	T	A	bias_e_value=1511900	bias_p_value=0.325724	consensus_score=97.2	fisher_strand_p_value=0.0980392	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=9/23	major_frequency=8.889e-01	minor_base=T	minor_cov=3/1	new_cov=9/23	polymorphism_frequency=8.889e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=3/1	total_cov=14/24
RA	1701	.	NC_000913	4627377	0	A	G	bias_e_value=3577850	bias_p_value=0.770815	consensus_score=87.2	fisher_strand_p_value=0.413793	frequency=1	ks_quality_p_value=0.978076	major_base=G	major_cov=11/17	major_frequency=9.655e-01	minor_base=T	minor_cov=1/0	new_cov=11/17	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/17
RA	1702	.	NC_000913	4627509	0	G	C	consensus_score=56.9	frequency=1	major_base=C	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	1703	.	NC_000913	4627512	0	C	T	consensus_score=58.9	frequency=1	major_base=T	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	1704	.	NC_000913	4627518	0	C	G	consensus_score=60.0	frequency=1	major_base=G	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	1705	.	NC_000913	4627539	0	A	G	consensus_score=58.8	frequency=1	major_base=G	major_cov=10/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/10
RA	1706	.	NC_000913	4627593	0	G	A	consensus_score=46.6	frequency=1	major_base=A	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	1707	.	NC_000913	4627626	0	T	C	consensus_score=46.0	frequency=1	major_base=C	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	1708	.	NC_000913	4627629	0	C	T	bias_e_value=4639130	bias_p_value=0.999457	consensus_score=38.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.967216	major_base=T	major_cov=8/7	major_frequency=9.375e-01	minor_base=C	minor_cov=1/0	new_cov=8/7	polymorphism_frequency=9.375e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=1/0	total_cov=9/7
RA	1709	.	NC_000913	4627641	0	C	T	bias_e_value=3830780	bias_p_value=0.825304	consensus_score=45.3	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/7	major_frequency=9.412e-01	minor_base=G	minor_cov=0/1	new_cov=9/7	polymorphism_frequency=9.412e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	1710	.	NC_000913	4627650	0	T	C	consensus_score=50.2	frequency=1	major_base=C	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	1711	.	NC_000913	4627653	0	C	T	consensus_score=48.3	frequency=1	major_base=T	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	1712	.	NC_000913	4627668	0	G	C	consensus_score=42.1	frequency=1	major_base=C	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	1713	.	NC_000913	4627689	0	T	C	consensus_score=49.6	frequency=1	major_base=C	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	1714	.	NC_000913	4627698	0	G	A	consensus_score=48.0	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	1715	.	NC_000913	4627818	0	A	G	bias_e_value=4126540	bias_p_value=0.889023	consensus_score=22.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.567546	major_base=G	major_cov=3/8	major_frequency=8.462e-01	minor_base=A	minor_cov=1/1	new_cov=3/8	polymorphism_frequency=8.462e-01	polymorphism_score=-0.9	prediction=consensus	ref_cov=1/1	total_cov=4/9
RA	1716	.	NC_000913	4627824	0	C	T	bias_e_value=4614680	bias_p_value=0.994188	consensus_score=23.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.894144	major_base=T	major_cov=3/8	major_frequency=8.462e-01	minor_base=C	minor_cov=1/1	new_cov=3/8	polymorphism_frequency=8.462e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/1	total_cov=4/9
RA	1717	.	NC_000913	4627833	0	T	C	bias_e_value=4517070	bias_p_value=0.97316	consensus_score=24.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.77744	major_base=C	major_cov=3/8	major_frequency=8.462e-01	minor_base=T	minor_cov=1/1	new_cov=3/8	polymorphism_frequency=8.462e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=4/9
RA	1718	.	NC_000913	4627893	0	G	T	bias_e_value=4095340	bias_p_value=0.882302	consensus_score=38.6	fisher_strand_p_value=0.565789	frequency=1	ks_quality_p_value=0.982508	major_base=T	major_cov=7/10	major_frequency=8.500e-01	minor_base=G	minor_cov=2/1	new_cov=7/10	polymorphism_frequency=8.500e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=2/1	total_cov=9/11
RA	1719	.	NC_000913	4627986	0	C	G	bias_e_value=4366700	bias_p_value=0.940764	consensus_score=68.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.676174	major_base=G	major_cov=9/14	major_frequency=9.200e-01	minor_base=C	minor_cov=1/1	new_cov=9/14	polymorphism_frequency=9.200e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=1/1	total_cov=10/15
RA	1720	.	NC_000913	4628001	0	T	C	bias_e_value=4455420	bias_p_value=0.959878	consensus_score=70.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.730444	major_base=C	major_cov=10/14	major_frequency=9.231e-01	minor_base=T	minor_cov=1/1	new_cov=10/14	polymorphism_frequency=9.231e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/1	total_cov=11/15
RA	1721	.	NC_000913	4628007	0	G	A	bias_e_value=4595480	bias_p_value=0.990052	consensus_score=64.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.862303	major_base=A	major_cov=11/14	major_frequency=9.259e-01	minor_base=G	minor_cov=1/1	new_cov=11/14	polymorphism_frequency=9.259e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/1	total_cov=12/15
RA	1722	.	NC_000913	4628028	0	C	T	bias_e_value=3794640	bias_p_value=0.81752	consensus_score=71.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.460409	major_base=T	major_cov=10/14	major_frequency=9.231e-01	minor_base=C	minor_cov=1/1	new_cov=10/14	polymorphism_frequency=9.231e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/1	total_cov=12/15
RA	1723	.	NC_000913	4628082	0	C	T	bias_e_value=4626400	bias_p_value=0.996715	consensus_score=63.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.920044	major_base=T	major_cov=11/13	major_frequency=8.889e-01	minor_base=C	minor_cov=1/2	new_cov=11/13	polymorphism_frequency=8.889e-01	polymorphism_score=-0.6	prediction=consensus	ref_cov=1/2	total_cov=12/15
RA	1724	.	NC_000913	4628106	0	C	T	bias_e_value=3116610	bias_p_value=0.671445	consensus_score=54.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.308618	major_base=T	major_cov=9/14	major_frequency=9.200e-01	minor_base=C	minor_cov=1/1	new_cov=9/14	polymorphism_frequency=9.200e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/1	total_cov=10/15
RA	1725	.	NC_000913	4628160	0	T	C	bias_e_value=1474450	bias_p_value=0.317655	consensus_score=36.4	fisher_strand_p_value=0.590062	frequency=1	ks_quality_p_value=0.160307	major_base=C	major_cov=10/9	major_frequency=8.261e-01	minor_base=T	minor_cov=1/3	new_cov=10/9	polymorphism_frequency=8.261e-01	polymorphism_score=3.1	prediction=consensus	ref_cov=1/3	total_cov=11/12
RA	1726	.	NC_000913	4628163	0	C	T	bias_e_value=1489060	bias_p_value=0.320804	consensus_score=32.0	fisher_strand_p_value=0.593985	frequency=1	ks_quality_p_value=0.161503	major_base=T	major_cov=9/9	major_frequency=8.182e-01	minor_base=C	minor_cov=1/3	new_cov=9/9	polymorphism_frequency=8.182e-01	polymorphism_score=4.4	prediction=consensus	ref_cov=1/3	total_cov=11/12
RA	1727	.	NC_000913	4628311	0	C	T	bias_e_value=1599520	bias_p_value=0.3446	consensus_score=38.6	fisher_strand_p_value=0.283267	frequency=1	ks_quality_p_value=0.375311	major_base=T	major_cov=15/5	major_frequency=8.000e-01	minor_base=C	minor_cov=2/3	new_cov=15/5	polymorphism_frequency=8.000e-01	polymorphism_score=7.3	prediction=consensus	ref_cov=2/3	total_cov=18/8
RA	1728	.	NC_000913	4628442	0	C	G	bias_e_value=4637260	bias_p_value=0.999054	consensus_score=71.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.956822	major_base=G	major_cov=18/7	major_frequency=8.621e-01	minor_base=C	minor_cov=3/1	new_cov=18/7	polymorphism_frequency=8.621e-01	polymorphism_score=3.8	prediction=consensus	ref_cov=3/1	total_cov=21/8
RA	1729	.	NC_000913	4628463	0	T	C	bias_e_value=2027860	bias_p_value=0.436883	consensus_score=58.8	fisher_strand_p_value=0.49	frequency=1	ks_quality_p_value=0.308618	major_base=C	major_cov=17/6	major_frequency=9.200e-01	minor_base=T	minor_cov=1/1	new_cov=17/6	polymorphism_frequency=9.200e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/1	total_cov=18/7
RA	1730	.	NC_000913	4628481	0	A	C	bias_e_value=2099570	bias_p_value=0.452332	consensus_score=47.3	fisher_strand_p_value=0.525692	frequency=1	ks_quality_p_value=0.303448	major_base=C	major_cov=15/6	major_frequency=9.130e-01	minor_base=A	minor_cov=1/1	new_cov=15/6	polymorphism_frequency=9.130e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/1	total_cov=16/7
RA	1731	.	NC_000913	4628487	0	C	T	bias_e_value=2894560	bias_p_value=0.623606	consensus_score=50.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.270065	major_base=T	major_cov=14/6	major_frequency=9.091e-01	minor_base=C	minor_cov=1/1	new_cov=14/6	polymorphism_frequency=9.091e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=15/7
RA	1732	.	NC_000913	4628493	0	T	C	bias_e_value=1828080	bias_p_value=0.393842	consensus_score=46.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.129321	major_base=C	major_cov=14/6	major_frequency=9.091e-01	minor_base=T	minor_cov=1/1	new_cov=14/6	polymorphism_frequency=9.091e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=15/7
RA	1733	.	NC_000913	4628514	0	A	G	bias_e_value=3592530	bias_p_value=0.773976	consensus_score=53.0	fisher_strand_p_value=0.536232	frequency=1	ks_quality_p_value=0.7613	major_base=G	major_cov=14/8	major_frequency=9.167e-01	minor_base=A	minor_cov=2/0	new_cov=14/8	polymorphism_frequency=9.167e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=2/0	total_cov=16/8
RA	1734	.	NC_000913	4628551	0	T	C	bias_e_value=3172930	bias_p_value=0.683577	consensus_score=51.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.319087	major_base=C	major_cov=12/10	major_frequency=9.565e-01	minor_base=T	minor_cov=1/0	new_cov=12/10	polymorphism_frequency=9.565e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=13/10
RA	1735	.	NC_000913	4628560	0	T	G	bias_e_value=2262120	bias_p_value=0.487353	consensus_score=58.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.179237	major_base=G	major_cov=11/9	major_frequency=9.524e-01	minor_base=T	minor_cov=1/0	new_cov=11/9	polymorphism_frequency=9.524e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=13/9
RA	1736	.	NC_000913	4628583	0	G	A	bias_e_value=2923220	bias_p_value=0.629781	consensus_score=46.6	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.580164	major_base=A	major_cov=8/10	major_frequency=9.000e-01	minor_base=G	minor_cov=2/0	new_cov=8/10	polymorphism_frequency=9.000e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=2/0	total_cov=11/10
RA	1737	.	NC_000913	4628592	0	T	.	bias_e_value=2313140	bias_p_value=0.498345	consensus_score=52.3	fisher_strand_p_value=0.210526	frequency=1	ks_quality_p_value=0.882064	major_base=.	major_cov=7/10	major_frequency=8.500e-01	minor_base=T	minor_cov=3/0	new_cov=7/10	polymorphism_frequency=8.500e-01	polymorphism_score=4.8	prediction=consensus	ref_cov=3/0	total_cov=10/10
RA	1738	.	NC_000913	4628668	0	C	T	bias_e_value=1970440	bias_p_value=0.424512	consensus_score=40.5	fisher_strand_p_value=0.210526	frequency=1	ks_quality_p_value=0.687555	major_base=T	major_cov=7/10	major_frequency=8.947e-01	minor_base=C	minor_cov=2/0	new_cov=7/10	polymorphism_frequency=8.947e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=2/0	total_cov=9/10
RA	1739	.	NC_000913	4628678	0	A	C	bias_e_value=2136030	bias_p_value=0.460189	consensus_score=32.8	fisher_strand_p_value=0.210526	frequency=1	ks_quality_p_value=0.778198	major_base=C	major_cov=7/10	major_frequency=8.947e-01	minor_base=A	minor_cov=2/0	new_cov=7/10	polymorphism_frequency=8.947e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=2/0	total_cov=9/10
RA	1740	.	NC_000913	4628683	0	G	A	bias_e_value=2857050	bias_p_value=0.615525	consensus_score=46.8	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.55722	major_base=A	major_cov=8/10	major_frequency=9.474e-01	minor_base=G	minor_cov=1/0	new_cov=8/10	polymorphism_frequency=9.474e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=9/10
RA	1741	.	NC_000913	4628699	0	A	G	bias_e_value=3802980	bias_p_value=0.819317	consensus_score=38.9	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.97688	major_base=G	major_cov=8/10	major_frequency=9.474e-01	minor_base=T	minor_cov=1/0	new_cov=8/10	polymorphism_frequency=9.474e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/0	total_cov=10/10
RA	1742	.	NC_000913	4628707	0	C	A	bias_e_value=4641590	bias_p_value=0.999986	consensus_score=49.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994751	major_base=A	major_cov=9/10	major_frequency=9.500e-01	minor_base=C	minor_cov=1/0	new_cov=9/10	polymorphism_frequency=9.500e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=10/10
RA	1743	.	NC_000913	4628710	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=42.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=9/9	major_frequency=9.474e-01	minor_base=T	minor_cov=1/0	new_cov=9/9	polymorphism_frequency=9.474e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=10/10
RA	1744	.	NC_000913	4628721	0	C	T	bias_e_value=3841560	bias_p_value=0.827628	consensus_score=49.9	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/10	major_frequency=9.474e-01	minor_base=C	minor_cov=1/0	new_cov=8/10	polymorphism_frequency=9.474e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=9/10
RA	1745	.	NC_000913	4628778	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=45.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=10/5	major_frequency=9.375e-01	minor_base=.	minor_cov=1/0	new_cov=10/5	polymorphism_frequency=9.375e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=11/5
RA	1746	.	NC_000913	4628779	0	C	G	bias_e_value=4641490	bias_p_value=0.999965	consensus_score=44.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991701	major_base=G	major_cov=10/5	major_frequency=9.375e-01	minor_base=C	minor_cov=1/0	new_cov=10/5	polymorphism_frequency=9.375e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=11/5
RA	1747	.	NC_000913	4628782	0	T	A	consensus_score=42.6	frequency=1	major_base=A	major_cov=11/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/5
RA	1748	.	NC_000913	4628785	0	T	C	consensus_score=48.4	frequency=1	major_base=C	major_cov=11/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/5
RA	1749	.	NC_000913	4628802	0	G	T	consensus_score=53.2	frequency=1	major_base=T	major_cov=13/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/5
RA	1750	.	NC_000913	4628805	0	G	T	bias_e_value=4641550	bias_p_value=0.999979	consensus_score=48.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993485	major_base=T	major_cov=12/5	major_frequency=9.444e-01	minor_base=G	minor_cov=1/0	new_cov=12/5	polymorphism_frequency=9.444e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=13/5
RA	1751	.	NC_000913	4628807	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=51.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=12/5	major_frequency=9.444e-01	minor_base=A	minor_cov=1/0	new_cov=12/5	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/5
RA	1752	.	NC_000913	4628831	0	G	A	bias_e_value=3474750	bias_p_value=0.748602	consensus_score=53.3	fisher_strand_p_value=0.380952	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/7	major_frequency=9.524e-01	minor_base=C	minor_cov=0/1	new_cov=13/7	polymorphism_frequency=9.524e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/8
RA	1753	.	NC_000913	4628897	0	C	T	bias_e_value=4641560	bias_p_value=0.99998	consensus_score=62.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99361	major_base=T	major_cov=15/9	major_frequency=9.231e-01	minor_base=C	minor_cov=1/1	new_cov=15/9	polymorphism_frequency=9.231e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/1	total_cov=16/10
RA	1754	.	NC_000913	4628939	0	G	A	bias_e_value=3890870	bias_p_value=0.838252	consensus_score=64.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.488197	major_base=A	major_cov=14/11	major_frequency=9.259e-01	minor_base=G	minor_cov=1/1	new_cov=14/11	polymorphism_frequency=9.259e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=15/12
RA	1755	.	NC_000913	4628984	0	A	G	bias_e_value=4298320	bias_p_value=0.926033	consensus_score=91.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.640919	major_base=G	major_cov=19/13	major_frequency=9.412e-01	minor_base=A	minor_cov=1/1	new_cov=19/13	polymorphism_frequency=9.412e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/1	total_cov=20/14
RA	1756	.	NC_000913	4628990	0	A	G	bias_e_value=4608440	bias_p_value=0.992845	consensus_score=95.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.882783	major_base=G	major_cov=19/14	major_frequency=9.429e-01	minor_base=A	minor_cov=1/1	new_cov=19/14	polymorphism_frequency=9.429e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=1/1	total_cov=20/15
RA	1757	.	NC_000913	4629188	0	G	A	bias_e_value=2985630	bias_p_value=0.643226	consensus_score=69.2	fisher_strand_p_value=0.487179	frequency=1	ks_quality_p_value=0.585778	major_base=A	major_cov=12/13	major_frequency=9.259e-01	minor_base=G	minor_cov=0/2	new_cov=12/13	polymorphism_frequency=9.259e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/2	total_cov=13/15
RA	1758	.	NC_000913	4629281	0	G	A	bias_e_value=1735790	bias_p_value=0.373959	consensus_score=64.0	fisher_strand_p_value=0.251232	frequency=1	ks_quality_p_value=0.476761	major_base=A	major_cov=19/8	major_frequency=9.000e-01	minor_base=G	minor_cov=1/2	new_cov=19/8	polymorphism_frequency=9.000e-01	polymorphism_score=1.4	prediction=consensus	ref_cov=1/2	total_cov=20/10
RA	1759	.	NC_000913	4629356	0	C	T	bias_e_value=2627430	bias_p_value=0.566056	consensus_score=71.4	fisher_strand_p_value=0.547287	frequency=1	ks_quality_p_value=0.417811	major_base=T	major_cov=19/11	major_frequency=9.091e-01	minor_base=C	minor_cov=1/2	new_cov=19/11	polymorphism_frequency=9.091e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=1/2	total_cov=20/13
RA	1760	.	NC_000913	4629377	0	C	T	bias_e_value=2168660	bias_p_value=0.467216	consensus_score=84.1	fisher_strand_p_value=0.167742	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/11	major_frequency=9.355e-01	minor_base=G	minor_cov=0/2	new_cov=18/11	polymorphism_frequency=9.355e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=18/14
RA	1761	.	NC_000913	4629446	0	A	G	consensus_score=100.7	frequency=1	major_base=G	major_cov=20/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/14
RA	1762	.	NC_000913	4629473	0	C	T	consensus_score=79.9	frequency=1	major_base=T	major_cov=14/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	1763	.	NC_000913	4629476	0	T	C	consensus_score=78.7	frequency=1	major_base=C	major_cov=14/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	1764	.	NC_000913	4629515	0	A	G	consensus_score=93.5	frequency=1	major_base=G	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	1765	.	NC_000913	4629521	0	G	A	bias_e_value=3502860	bias_p_value=0.754658	consensus_score=96.7	fisher_strand_p_value=0.393939	frequency=1	ks_quality_p_value=0.983099	major_base=A	major_cov=20/12	major_frequency=9.697e-01	minor_base=T	minor_cov=0/1	new_cov=20/12	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/13
RA	1766	.	NC_000913	4629524	0	A	G	consensus_score=104.9	frequency=1	major_base=G	major_cov=20/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/13
RA	1767	.	NC_000913	4629635	0	T	C	consensus_score=120.4	frequency=1	major_base=C	major_cov=26/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/11
RA	1768	.	NC_000913	4629647	0	C	T	consensus_score=115.2	frequency=1	major_base=T	major_cov=26/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/12
RA	1769	.	NC_000913	4629674	0	A	G	bias_e_value=4023280	bias_p_value=0.866777	consensus_score=114.2	fisher_strand_p_value=0.54386	frequency=1	ks_quality_p_value=0.975361	major_base=G	major_cov=24/13	major_frequency=9.487e-01	minor_base=T	minor_cov=2/0	new_cov=24/13	polymorphism_frequency=9.487e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/13
RA	1770	.	NC_000913	4629686	0	A	T	bias_e_value=4641580	bias_p_value=0.999985	consensus_score=112.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994616	major_base=T	major_cov=26/12	major_frequency=9.744e-01	minor_base=G	minor_cov=1/0	new_cov=26/12	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/12
RA	1771	.	NC_000913	4629689	0	T	C	consensus_score=128.5	frequency=1	major_base=C	major_cov=28/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/12
RA	1772	.	NC_000913	4629701	0	T	C	consensus_score=122.6	frequency=1	major_base=C	major_cov=32/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/12
RA	1773	.	NC_000913	4629716	0	A	G	consensus_score=135.9	frequency=1	major_base=G	major_cov=31/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/13
RA	1774	.	NC_000913	4629797	0	A	G	bias_e_value=3735870	bias_p_value=0.804858	consensus_score=107.7	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=20/15	major_frequency=9.722e-01	minor_base=T	minor_cov=0/1	new_cov=20/15	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	1775	.	NC_000913	4629887	0	A	C	consensus_score=96.6	frequency=1	major_base=C	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	1776	.	NC_000913	4629896	0	T	C	consensus_score=105.5	frequency=1	major_base=C	major_cov=18/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/15
RA	1777	.	NC_000913	4630022	0	T	C	bias_e_value=1250690	bias_p_value=0.269449	consensus_score=94.9	fisher_strand_p_value=0.289582	frequency=1	ks_quality_p_value=0.259232	major_base=C	major_cov=14/23	major_frequency=9.024e-01	minor_base=T	minor_cov=3/1	new_cov=14/23	polymorphism_frequency=9.024e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=3/1	total_cov=17/24
RA	1778	.	NC_000913	4630106	0	A	G	bias_e_value=4641530	bias_p_value=0.999974	consensus_score=97.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992849	major_base=G	major_cov=16/22	major_frequency=8.636e-01	minor_base=A	minor_cov=3/3	new_cov=16/22	polymorphism_frequency=8.636e-01	polymorphism_score=3.3	prediction=consensus	ref_cov=3/3	total_cov=20/26
RA	1779	.	NC_000913	4630238	0	T	A	bias_e_value=3886050	bias_p_value=0.837212	consensus_score=63.0	fisher_strand_p_value=0.666375	frequency=1	ks_quality_p_value=0.730444	major_base=A	major_cov=16/10	major_frequency=8.125e-01	minor_base=T	minor_cov=3/3	new_cov=16/10	polymorphism_frequency=8.125e-01	polymorphism_score=9.4	prediction=consensus	ref_cov=3/3	total_cov=19/13
RA	1780	.	NC_000913	4630304	0	A	G	bias_e_value=2680150	bias_p_value=0.577414	consensus_score=46.0	fisher_strand_p_value=0.462451	frequency=1	ks_quality_p_value=0.511296	major_base=G	major_cov=16/5	major_frequency=9.130e-01	minor_base=A	minor_cov=1/1	new_cov=16/5	polymorphism_frequency=9.130e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=17/7
RA	1781	.	NC_000913	4630385	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=65.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/7	major_frequency=9.259e-01	minor_base=C	minor_cov=2/0	new_cov=18/7	polymorphism_frequency=9.259e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/7
RA	1782	.	NC_000913	4630400	0	A	G	consensus_score=86.8	frequency=1	major_base=G	major_cov=22/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/9
RA	1783	.	NC_000913	4630553	0	A	G	consensus_score=94.7	frequency=1	major_base=G	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	1784	.	NC_000913	4630602	0	C	T	bias_e_value=1529460	bias_p_value=0.329508	consensus_score=78.7	fisher_strand_p_value=0.496774	frequency=1	ks_quality_p_value=0.200643	major_base=T	major_cov=16/13	major_frequency=9.355e-01	minor_base=C	minor_cov=2/0	new_cov=16/13	polymorphism_frequency=9.355e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=2/0	total_cov=19/13
RA	1785	.	NC_000913	4630603	0	C	T	bias_e_value=1149330	bias_p_value=0.247612	consensus_score=83.9	fisher_strand_p_value=0.502016	frequency=1	ks_quality_p_value=0.133098	major_base=T	major_cov=17/13	major_frequency=9.375e-01	minor_base=C	minor_cov=2/0	new_cov=17/13	polymorphism_frequency=9.375e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=2/0	total_cov=19/13
RA	1786	.	NC_000913	4630615	0	C	T	bias_e_value=440360	bias_p_value=0.0948714	consensus_score=85.6	fisher_strand_p_value=0.502016	frequency=1	ks_quality_p_value=0.0381333	major_base=T	major_cov=17/13	major_frequency=9.375e-01	minor_base=C	minor_cov=2/0	new_cov=17/13	polymorphism_frequency=9.375e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=2/0	total_cov=19/13
RA	1787	.	NC_000913	4630837	0	T	C	bias_e_value=3030210	bias_p_value=0.65283	consensus_score=112.1	fisher_strand_p_value=0.488372	frequency=1	ks_quality_p_value=0.600199	major_base=C	major_cov=20/21	major_frequency=9.535e-01	minor_base=T	minor_cov=2/0	new_cov=20/21	polymorphism_frequency=9.535e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=2/0	total_cov=22/22
RA	1788	.	NC_000913	4630912	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=108.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/18	major_frequency=9.474e-01	minor_base=G	minor_cov=1/1	new_cov=18/18	polymorphism_frequency=9.474e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/1	total_cov=19/19
RA	1789	.	NC_000913	4630921	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=102.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/18	major_frequency=9.474e-01	minor_base=G	minor_cov=1/1	new_cov=18/18	polymorphism_frequency=9.474e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/1	total_cov=19/20
RA	1790	.	NC_000913	4630945	0	C	T	bias_e_value=4640720	bias_p_value=0.999799	consensus_score=87.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.980001	major_base=T	major_cov=14/19	major_frequency=9.167e-01	minor_base=C	minor_cov=1/2	new_cov=14/19	polymorphism_frequency=9.167e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/2	total_cov=15/21
RA	1791	.	NC_000913	4630960	0	T	C	bias_e_value=3885650	bias_p_value=0.837127	consensus_score=95.7	fisher_strand_p_value=0.486631	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=16/16	major_frequency=9.412e-01	minor_base=T	minor_cov=0/2	new_cov=16/16	polymorphism_frequency=9.412e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/2	total_cov=16/18
RA	1792	.	NC_000913	4630984	0	G	T	bias_e_value=3510330	bias_p_value=0.756268	consensus_score=64.3	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=0.807887	major_base=T	major_cov=13/12	major_frequency=9.259e-01	minor_base=G	minor_cov=0/2	new_cov=13/12	polymorphism_frequency=9.259e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/2	total_cov=13/14
RA	1793	.	NC_000913	4631146	0	G	A	bias_e_value=789096	bias_p_value=0.170003	consensus_score=83.1	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=0.0833011	major_base=A	major_cov=17/15	major_frequency=9.412e-01	minor_base=G	minor_cov=0/2	new_cov=17/15	polymorphism_frequency=9.412e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=0/2	total_cov=17/18
RA	1794	.	NC_000913	4631245	0	C	T	bias_e_value=2063850	bias_p_value=0.444638	consensus_score=119.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.155358	major_base=T	major_cov=23/21	major_frequency=9.362e-01	minor_base=C	minor_cov=2/1	new_cov=23/21	polymorphism_frequency=9.362e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=2/1	total_cov=26/22
RA	1795	.	NC_000913	4631323	0	A	T	bias_e_value=4556380	bias_p_value=0.981629	consensus_score=128.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.814543	major_base=T	major_cov=22/26	major_frequency=9.231e-01	minor_base=A	minor_cov=2/2	new_cov=22/26	polymorphism_frequency=9.231e-01	polymorphism_score=2.3	prediction=consensus	ref_cov=2/2	total_cov=24/30
RA	1796	.	NC_000913	4634882	0	C	T	bias_e_value=3619920	bias_p_value=0.779878	consensus_score=76.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.41488	major_base=T	major_cov=11/20	major_frequency=9.394e-01	minor_base=C	minor_cov=1/1	new_cov=11/20	polymorphism_frequency=9.394e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=12/21
RA	1797	.	NC_000913	4635658	0	T	C	bias_e_value=4631940	bias_p_value=0.997907	consensus_score=81.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.936002	major_base=C	major_cov=18/9	major_frequency=9.643e-01	minor_base=T	minor_cov=1/0	new_cov=18/9	polymorphism_frequency=9.643e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=19/9
RA	1798	.	NC_000913	4635706	0	C	A	bias_e_value=4390980	bias_p_value=0.945996	consensus_score=88.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.689898	major_base=A	major_cov=20/12	major_frequency=9.697e-01	minor_base=C	minor_cov=1/0	new_cov=20/12	polymorphism_frequency=9.697e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=21/12
RA	1799	.	NC_000913	4635757	0	C	T	bias_e_value=3679630	bias_p_value=0.79274	consensus_score=74.9	fisher_strand_p_value=0.52381	frequency=1	ks_quality_p_value=0.820532	major_base=T	major_cov=16/10	major_frequency=9.286e-01	minor_base=C	minor_cov=2/0	new_cov=16/10	polymorphism_frequency=9.286e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=2/0	total_cov=18/11
RA	1800	.	NC_000913	4635889	0	T	C	bias_e_value=2430140	bias_p_value=0.52355	consensus_score=86.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.201035	major_base=C	major_cov=17/16	major_frequency=9.706e-01	minor_base=T	minor_cov=1/0	new_cov=17/16	polymorphism_frequency=9.706e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=18/16
RA	1801	.	NC_000913	4636139	0	A	C	bias_e_value=2387930	bias_p_value=0.514457	consensus_score=98.6	fisher_strand_p_value=0.201719	frequency=1	ks_quality_p_value=0.968753	major_base=C	major_cov=13/23	major_frequency=8.571e-01	minor_base=A	minor_cov=4/2	new_cov=13/23	polymorphism_frequency=8.571e-01	polymorphism_score=1.6	prediction=consensus	ref_cov=4/2	total_cov=17/25
RA	1802	.	NC_000913	4636146	0	T	C	bias_e_value=4226990	bias_p_value=0.910665	consensus_score=77.9	fisher_strand_p_value=0.630886	frequency=1	ks_quality_p_value=0.964157	major_base=C	major_cov=13/21	major_frequency=8.718e-01	minor_base=T	minor_cov=3/2	new_cov=13/21	polymorphism_frequency=8.718e-01	polymorphism_score=2.7	prediction=consensus	ref_cov=3/2	total_cov=16/23
RA	1803	.	NC_000913	4636147	0	A	T	bias_e_value=3063150	bias_p_value=0.659927	consensus_score=74.0	fisher_strand_p_value=0.364907	frequency=1	ks_quality_p_value=0.819253	major_base=T	major_cov=12/21	major_frequency=8.684e-01	minor_base=A	minor_cov=3/2	new_cov=12/21	polymorphism_frequency=8.684e-01	polymorphism_score=1.8	prediction=consensus	ref_cov=3/2	total_cov=16/23
RA	1804	.	NC_000913	4636175	0	C	T	bias_e_value=3222630	bias_p_value=0.694285	consensus_score=93.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.328583	major_base=T	major_cov=15/23	major_frequency=9.268e-01	minor_base=C	minor_cov=1/2	new_cov=15/23	polymorphism_frequency=9.268e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=1/2	total_cov=17/25
RA	1805	.	NC_000913	4636180	0	G	T	bias_e_value=4198690	bias_p_value=0.904568	consensus_score=96.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.596251	major_base=T	major_cov=14/22	major_frequency=9.231e-01	minor_base=G	minor_cov=1/2	new_cov=14/22	polymorphism_frequency=9.231e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=1/2	total_cov=16/24
RA	1806	.	NC_000913	4636186	0	T	C	bias_e_value=1709430	bias_p_value=0.368281	consensus_score=97.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.117116	major_base=C	major_cov=16/21	major_frequency=9.250e-01	minor_base=T	minor_cov=1/2	new_cov=16/21	polymorphism_frequency=9.250e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=1/2	total_cov=17/23
RA	1807	.	NC_000913	4636201	0	G	A	bias_e_value=4321230	bias_p_value=0.930968	consensus_score=98.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.652235	major_base=A	major_cov=16/20	major_frequency=9.231e-01	minor_base=G	minor_cov=1/2	new_cov=16/20	polymorphism_frequency=9.231e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=1/2	total_cov=18/22
RA	1808	.	NC_000913	4636309	0	C	T	bias_e_value=4390980	bias_p_value=0.945996	consensus_score=55.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.689898	major_base=T	major_cov=12/10	major_frequency=9.167e-01	minor_base=C	minor_cov=1/1	new_cov=12/10	polymorphism_frequency=9.167e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/1	total_cov=13/11
RA	1809	.	NC_000913	4636385	0	A	T	bias_e_value=4039830	bias_p_value=0.870343	consensus_score=64.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.536131	major_base=T	major_cov=14/7	major_frequency=9.545e-01	minor_base=A	minor_cov=1/0	new_cov=14/7	polymorphism_frequency=9.545e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=15/7
RA	1810	.	NC_000913	4636411	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=32.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/2	major_frequency=9.333e-01	minor_base=G	minor_cov=1/0	new_cov=12/2	polymorphism_frequency=9.333e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/0	total_cov=14/2
RA	1811	.	NC_000913	4636466	0	G	A	consensus_score=63.1	frequency=1	major_base=A	major_cov=16/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/5
RA	1812	.	NC_000913	4636474	0	T	G	consensus_score=58.9	frequency=1	major_base=G	major_cov=15/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/5
RA	1813	.	NC_000913	4636493	0	T	C	bias_e_value=4638780	bias_p_value=0.999382	consensus_score=65.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965052	major_base=C	major_cov=15/7	major_frequency=9.565e-01	minor_base=A	minor_cov=1/0	new_cov=15/7	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/7
RA	1814	.	NC_000913	4636513	0	A	G	consensus_score=68.8	frequency=1	major_base=G	major_cov=17/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/7
RA	1815	.	NC_000913	4636516	0	G	A	consensus_score=66.5	frequency=1	major_base=A	major_cov=17/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/7
RA	1816	.	NC_000913	4636543	0	G	A	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=89.5	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/11	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=18/11	polymorphism_frequency=9.667e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/1	total_cov=19/12
RA	1817	.	NC_000913	4636555	0	A	G	bias_e_value=2694530	bias_p_value=0.580511	consensus_score=88.0	fisher_strand_p_value=0.387097	frequency=1	ks_quality_p_value=0.616393	major_base=G	major_cov=19/11	major_frequency=9.677e-01	minor_base=A	minor_cov=0/1	new_cov=19/11	polymorphism_frequency=9.677e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=19/12
RA	1818	.	NC_000913	4636591	0	C	T	bias_e_value=3584260	bias_p_value=0.772195	consensus_score=94.8	fisher_strand_p_value=0.40625	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/12	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=19/12	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=19/13
RA	1819	.	NC_000913	4636610	0	C	T	bias_e_value=3655150	bias_p_value=0.787468	consensus_score=94.8	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=0.968257	major_base=T	major_cov=18/13	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=18/13	polymorphism_frequency=9.688e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=20/14
RA	1820	.	NC_000913	4636717	0	T	C	bias_e_value=3699360	bias_p_value=0.796993	consensus_score=105.1	fisher_strand_p_value=0.495495	frequency=1	ks_quality_p_value=0.877655	major_base=C	major_cov=16/19	major_frequency=9.459e-01	minor_base=T	minor_cov=0/2	new_cov=16/19	polymorphism_frequency=9.459e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/2	total_cov=16/21
RA	1821	.	NC_000913	4636749	0	A	G	bias_e_value=4244120	bias_p_value=0.914356	consensus_score=87.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.61579	major_base=G	major_cov=13/19	major_frequency=9.697e-01	minor_base=A	minor_cov=0/1	new_cov=13/19	polymorphism_frequency=9.697e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=13/20
RA	1822	.	NC_000913	4636767	0	C	T	bias_e_value=4638970	bias_p_value=0.999421	consensus_score=82.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.966177	major_base=T	major_cov=11/19	major_frequency=9.677e-01	minor_base=C	minor_cov=0/1	new_cov=11/19	polymorphism_frequency=9.677e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=11/20
RA	1823	.	NC_000913	4636821	0	G	A	consensus_score=106.8	frequency=1	major_base=A	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	1824	.	NC_000913	4636827	0	C	T	consensus_score=104.2	frequency=1	major_base=T	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	1825	.	NC_000913	4636993	0	G	T	bias_e_value=2678700	bias_p_value=0.5771	consensus_score=100.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.236232	major_base=T	major_cov=22/14	major_frequency=9.730e-01	minor_base=G	minor_cov=1/0	new_cov=22/14	polymorphism_frequency=9.730e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=23/14
RA	1826	.	NC_000913	4637001	0	C	T	bias_e_value=2531280	bias_p_value=0.545341	consensus_score=96.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.21491	major_base=T	major_cov=21/15	major_frequency=9.730e-01	minor_base=C	minor_cov=1/0	new_cov=21/15	polymorphism_frequency=9.730e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=22/15
RA	1827	.	NC_000913	4637037	0	A	G	bias_e_value=1537790	bias_p_value=0.331301	consensus_score=109.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.100453	major_base=G	major_cov=24/16	major_frequency=9.302e-01	minor_base=A	minor_cov=2/1	new_cov=24/16	polymorphism_frequency=9.302e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=2/1	total_cov=27/18
RA	1828	.	NC_000913	4637133	0	T	G	bias_e_value=4300480	bias_p_value=0.926497	consensus_score=124.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.641964	major_base=G	major_cov=28/11	major_frequency=9.286e-01	minor_base=T	minor_cov=2/1	new_cov=28/11	polymorphism_frequency=9.286e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=2/1	total_cov=30/12
RA	1829	.	NC_000913	4637151	0	A	G	bias_e_value=4183770	bias_p_value=0.901353	consensus_score=109.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.590095	major_base=G	major_cov=26/13	major_frequency=9.286e-01	minor_base=A	minor_cov=2/1	new_cov=26/13	polymorphism_frequency=9.286e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=2/1	total_cov=28/14
RA	1830	.	NC_000913	4637269	0	T	C	bias_e_value=2375680	bias_p_value=0.511818	consensus_score=113.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.193804	major_base=C	major_cov=22/18	major_frequency=9.091e-01	minor_base=T	minor_cov=2/2	new_cov=22/18	polymorphism_frequency=9.091e-01	polymorphism_score=2.2	prediction=consensus	ref_cov=2/2	total_cov=24/20
RA	1831	.	NC_000913	4637322	0	T	C	bias_e_value=2629860	bias_p_value=0.566577	consensus_score=118.2	fisher_strand_p_value=0.598837	frequency=1	ks_quality_p_value=0.382435	major_base=C	major_cov=19/22	major_frequency=9.318e-01	minor_base=T	minor_cov=2/1	new_cov=19/22	polymorphism_frequency=9.318e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=2/1	total_cov=21/23
RA	1832	.	NC_000913	4637346	0	T	C	bias_e_value=2888930	bias_p_value=0.622393	consensus_score=135.9	fisher_strand_p_value=0.580873	frequency=1	ks_quality_p_value=0.463338	major_base=C	major_cov=20/26	major_frequency=9.388e-01	minor_base=T	minor_cov=2/1	new_cov=20/26	polymorphism_frequency=9.388e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=2/1	total_cov=22/27
RA	1833	.	NC_000913	4637379	0	C	T	bias_e_value=2524800	bias_p_value=0.543944	consensus_score=115.9	fisher_strand_p_value=0.571805	frequency=1	ks_quality_p_value=0.374258	major_base=T	major_cov=18/25	major_frequency=9.348e-01	minor_base=C	minor_cov=2/1	new_cov=18/25	polymorphism_frequency=9.348e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=2/1	total_cov=20/27
RA	1834	.	NC_000913	4637382	0	C	T	bias_e_value=3042050	bias_p_value=0.655382	consensus_score=117.3	fisher_strand_p_value=0.567068	frequency=1	ks_quality_p_value=0.520584	major_base=T	major_cov=18/26	major_frequency=9.362e-01	minor_base=C	minor_cov=2/1	new_cov=18/26	polymorphism_frequency=9.362e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=2/1	total_cov=20/27
RA	1835	.	NC_000913	4637385	0	T	A	bias_e_value=4641120	bias_p_value=0.999886	consensus_score=140.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.984963	major_base=A	major_cov=18/26	major_frequency=9.167e-01	minor_base=T	minor_cov=2/2	new_cov=18/26	polymorphism_frequency=9.167e-01	polymorphism_score=1.7	prediction=consensus	ref_cov=2/2	total_cov=20/28
RA	1836	.	NC_000913	4637391	0	T	C	bias_e_value=3846270	bias_p_value=0.828642	consensus_score=120.7	fisher_strand_p_value=0.639223	frequency=1	ks_quality_p_value=0.743158	major_base=C	major_cov=18/26	major_frequency=8.980e-01	minor_base=T	minor_cov=3/2	new_cov=18/26	polymorphism_frequency=8.980e-01	polymorphism_score=4.4	prediction=consensus	ref_cov=3/2	total_cov=21/29
RA	1837	.	NC_000913	4637409	0	A	G	bias_e_value=4276040	bias_p_value=0.921233	consensus_score=106.4	fisher_strand_p_value=0.670334	frequency=1	ks_quality_p_value=0.940317	major_base=G	major_cov=15/24	major_frequency=8.667e-01	minor_base=A	minor_cov=3/3	new_cov=15/24	polymorphism_frequency=8.667e-01	polymorphism_score=6.0	prediction=consensus	ref_cov=3/3	total_cov=19/27
RA	1838	.	NC_000913	4637412	0	C	T	bias_e_value=2350700	bias_p_value=0.506437	consensus_score=104.7	fisher_strand_p_value=0.300189	frequency=1	ks_quality_p_value=0.634736	major_base=T	major_cov=16/24	major_frequency=9.091e-01	minor_base=C	minor_cov=3/1	new_cov=16/24	polymorphism_frequency=9.091e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=3/1	total_cov=19/27
RA	1839	.	NC_000913	4637478	0	C	T	bias_e_value=4288150	bias_p_value=0.923842	consensus_score=119.9	fisher_strand_p_value=0.645665	frequency=1	ks_quality_p_value=0.985085	major_base=T	major_cov=19/25	major_frequency=8.980e-01	minor_base=C	minor_cov=3/2	new_cov=19/25	polymorphism_frequency=8.980e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=3/2	total_cov=22/27
RA	1840	.	NC_000913	4637481	0	A	G	bias_e_value=3088650	bias_p_value=0.665419	consensus_score=134.8	fisher_strand_p_value=0.313603	frequency=1	ks_quality_p_value=0.967874	major_base=G	major_cov=19/26	major_frequency=9.184e-01	minor_base=A	minor_cov=3/1	new_cov=19/26	polymorphism_frequency=9.184e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=3/1	total_cov=22/27
RA	1841	.	NC_000913	4637487	0	T	C	bias_e_value=2943650	bias_p_value=0.634182	consensus_score=130.0	fisher_strand_p_value=0.322284	frequency=1	ks_quality_p_value=0.863332	major_base=C	major_cov=20/26	major_frequency=9.200e-01	minor_base=T	minor_cov=3/1	new_cov=20/26	polymorphism_frequency=9.200e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=3/1	total_cov=23/27
RA	1842	.	NC_000913	4637523	0	A	C	bias_e_value=4585950	bias_p_value=0.988	consensus_score=124.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.849134	major_base=C	major_cov=19/28	major_frequency=9.216e-01	minor_base=A	minor_cov=2/2	new_cov=19/28	polymorphism_frequency=9.216e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=2/2	total_cov=21/30
RA	1843	.	NC_000913	4637553	0	G	A	bias_e_value=2903720	bias_p_value=0.62558	consensus_score=111.5	fisher_strand_p_value=0.554757	frequency=1	ks_quality_p_value=0.489542	major_base=A	major_cov=16/26	major_frequency=9.333e-01	minor_base=G	minor_cov=2/1	new_cov=16/26	polymorphism_frequency=9.333e-01	polymorphism_score=-0.6	prediction=consensus	ref_cov=2/1	total_cov=19/28
RA	1844	.	NC_000913	4637577	0	T	C	bias_e_value=4640820	bias_p_value=0.99982	consensus_score=109.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.981099	major_base=C	major_cov=15/24	major_frequency=9.070e-01	minor_base=T	minor_cov=2/2	new_cov=15/24	polymorphism_frequency=9.070e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=2/2	total_cov=18/26
RA	1845	.	NC_000913	4637675	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=100.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/22	major_frequency=9.250e-01	minor_base=C	minor_cov=1/2	new_cov=15/22	polymorphism_frequency=9.250e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/2	total_cov=16/24
RA	1846	.	NC_000913	4637697	0	C	T	bias_e_value=3989970	bias_p_value=0.859602	consensus_score=87.7	fisher_strand_p_value=0.519328	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/20	major_frequency=9.429e-01	minor_base=C	minor_cov=0/2	new_cov=13/20	polymorphism_frequency=9.429e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/2	total_cov=13/22
RA	1847	.	NC_000913	4637742	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=86.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=10/19	major_frequency=8.788e-01	minor_base=A	minor_cov=1/3	new_cov=10/19	polymorphism_frequency=8.788e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=1/3	total_cov=11/23
RA	1848	.	NC_000913	4637751	0	G	A	bias_e_value=3396420	bias_p_value=0.731728	consensus_score=78.2	fisher_strand_p_value=0.53629	frequency=1	ks_quality_p_value=0.678495	major_base=A	major_cov=10/20	major_frequency=9.091e-01	minor_base=G	minor_cov=0/3	new_cov=10/20	polymorphism_frequency=9.091e-01	polymorphism_score=0.9	prediction=consensus	ref_cov=0/3	total_cov=11/24
RA	1849	.	NC_000913	4637759	0	C	T	bias_e_value=2383670	bias_p_value=0.51354	consensus_score=83.7	fisher_strand_p_value=0.537696	frequency=1	ks_quality_p_value=0.362389	major_base=T	major_cov=13/22	major_frequency=9.211e-01	minor_base=C	minor_cov=0/3	new_cov=13/22	polymorphism_frequency=9.211e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=0/3	total_cov=13/25
RA	1850	.	NC_000913	4637766	0	C	T	bias_e_value=2006280	bias_p_value=0.432235	consensus_score=84.8	fisher_strand_p_value=0.148773	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/21	major_frequency=8.718e-01	minor_base=C	minor_cov=0/5	new_cov=13/21	polymorphism_frequency=8.718e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=0/5	total_cov=13/26
RA	1851	.	NC_000913	4637775	0	C	T	bias_e_value=3196410	bias_p_value=0.688637	consensus_score=83.7	fisher_strand_p_value=0.536134	frequency=1	ks_quality_p_value=0.603475	major_base=T	major_cov=12/21	major_frequency=9.167e-01	minor_base=C	minor_cov=0/3	new_cov=12/21	polymorphism_frequency=9.167e-01	polymorphism_score=0.7	prediction=consensus	ref_cov=0/3	total_cov=12/24
RA	1852	.	NC_000913	4637814	0	A	G	bias_e_value=1891070	bias_p_value=0.407414	consensus_score=94.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.13604	major_base=G	major_cov=10/23	major_frequency=9.429e-01	minor_base=A	minor_cov=0/2	new_cov=10/23	polymorphism_frequency=9.429e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=0/2	total_cov=10/25
RA	1853	.	NC_000913	4637857	0	T	C	bias_e_value=3521790	bias_p_value=0.758736	consensus_score=74.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.391606	major_base=C	major_cov=10/20	major_frequency=9.375e-01	minor_base=T	minor_cov=0/2	new_cov=10/20	polymorphism_frequency=9.375e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/2	total_cov=10/22
RA	1854	.	NC_000913	4637862	0	C	A	bias_e_value=3301610	bias_p_value=0.711301	consensus_score=79.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.3442	major_base=A	major_cov=11/20	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=11/20	polymorphism_frequency=9.688e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=11/21
RA	1855	.	NC_000913	4637896	0	A	G	bias_e_value=4635180	bias_p_value=0.998606	consensus_score=78.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.947656	major_base=G	major_cov=11/19	major_frequency=9.677e-01	minor_base=T	minor_cov=0/1	new_cov=11/19	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=11/21
RA	1856	.	NC_000913	4637898	0	G	C	bias_e_value=2465670	bias_p_value=0.531206	consensus_score=84.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.205842	major_base=C	major_cov=11/20	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=11/20	polymorphism_frequency=9.688e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=11/21
RA	1857	.	NC_000913	4637943	0	T	G	bias_e_value=3316100	bias_p_value=0.714423	consensus_score=109.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.347139	major_base=G	major_cov=16/22	major_frequency=9.744e-01	minor_base=T	minor_cov=0/1	new_cov=16/22	polymorphism_frequency=9.744e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=16/23
RA	1858	.	NC_000913	4637976	0	T	G	consensus_score=98.1	frequency=1	major_base=G	major_cov=15/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/19
RA	1859	.	NC_000913	4638142	0	T	C	bias_e_value=2532360	bias_p_value=0.545572	consensus_score=82.8	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.444457	major_base=C	major_cov=14/15	major_frequency=9.355e-01	minor_base=T	minor_cov=2/0	new_cov=14/15	polymorphism_frequency=9.355e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=2/0	total_cov=16/15
RA	1860	.	NC_000913	4638210	0	T	C	bias_e_value=3033480	bias_p_value=0.653535	consensus_score=100.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.293696	major_base=C	major_cov=17/17	major_frequency=9.714e-01	minor_base=T	minor_cov=1/0	new_cov=17/17	polymorphism_frequency=9.714e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=18/17
RA	1861	.	NC_000913	4638212	0	G	C	bias_e_value=4641520	bias_p_value=0.999971	consensus_score=97.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992453	major_base=C	major_cov=16/16	major_frequency=9.697e-01	minor_base=A	minor_cov=1/0	new_cov=16/16	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=18/17
RA	1862	.	NC_000913	4638214	0	C	T	bias_e_value=4581920	bias_p_value=0.987131	consensus_score=90.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.843921	major_base=T	major_cov=17/16	major_frequency=9.429e-01	minor_base=C	minor_cov=1/1	new_cov=17/16	polymorphism_frequency=9.429e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=18/17
RA	1863	.	NC_000913	4638264	0	G	A	bias_e_value=4102170	bias_p_value=0.883774	consensus_score=91.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.55841	major_base=A	major_cov=16/15	major_frequency=9.688e-01	minor_base=G	minor_cov=1/0	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=18/15
RA	1864	.	NC_000913	4638282	0	T	C	bias_e_value=4599760	bias_p_value=0.990975	consensus_score=86.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.868696	major_base=C	major_cov=16/15	major_frequency=9.394e-01	minor_base=T	minor_cov=1/1	new_cov=16/15	polymorphism_frequency=9.394e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/1	total_cov=18/16
RA	1865	.	NC_000913	4638354	0	C	T	consensus_score=86.6	frequency=1	major_base=T	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	1866	.	NC_000913	4638532	0	T	C	bias_e_value=3040210	bias_p_value=0.654984	consensus_score=73.6	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.66348	major_base=C	major_cov=11/15	major_frequency=9.630e-01	minor_base=T	minor_cov=1/0	new_cov=11/15	polymorphism_frequency=9.630e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=12/15
RA	1867	.	NC_000913	4638567	0	A	G	bias_e_value=3693130	bias_p_value=0.79565	consensus_score=67.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.433265	major_base=G	major_cov=17/11	major_frequency=9.032e-01	minor_base=A	minor_cov=2/1	new_cov=17/11	polymorphism_frequency=9.032e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=2/1	total_cov=19/14
RA	1868	.	NC_000913	4638587	0	C	T	bias_e_value=4641380	bias_p_value=0.999942	consensus_score=70.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.989236	major_base=T	major_cov=16/12	major_frequency=8.485e-01	minor_base=C	minor_cov=3/2	new_cov=16/12	polymorphism_frequency=8.485e-01	polymorphism_score=5.4	prediction=consensus	ref_cov=3/2	total_cov=19/15
RA	1869	.	NC_000913	4638600	0	A	C	bias_e_value=3726830	bias_p_value=0.80291	consensus_score=84.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.44205	major_base=C	major_cov=17/14	major_frequency=8.378e-01	minor_base=A	minor_cov=3/3	new_cov=17/14	polymorphism_frequency=8.378e-01	polymorphism_score=7.3	prediction=consensus	ref_cov=3/3	total_cov=20/17
RA	1870	.	NC_000913	4638735	0	T	C	bias_e_value=4502960	bias_p_value=0.970121	consensus_score=101.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.765722	major_base=C	major_cov=18/19	major_frequency=8.409e-01	minor_base=T	minor_cov=3/4	new_cov=18/19	polymorphism_frequency=8.409e-01	polymorphism_score=6.2	prediction=consensus	ref_cov=3/4	total_cov=21/23
RA	1871	.	NC_000913	4638818	0	G	C	bias_e_value=4465270	bias_p_value=0.962	consensus_score=79.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.737299	major_base=C	major_cov=13/15	major_frequency=9.333e-01	minor_base=G	minor_cov=1/1	new_cov=13/15	polymorphism_frequency=9.333e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/1	total_cov=14/16
RA	1872	.	NC_000913	4638883	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=62.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/12	major_frequency=9.545e-01	minor_base=C	minor_cov=0/1	new_cov=9/12	polymorphism_frequency=9.545e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/1	total_cov=9/14
RA	1873	.	NC_000913	4638885	0	A	G	bias_e_value=4638780	bias_p_value=0.999382	consensus_score=60.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965052	major_base=G	major_cov=9/13	major_frequency=9.565e-01	minor_base=A	minor_cov=0/1	new_cov=9/13	polymorphism_frequency=9.565e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=9/14
RA	1874	.	NC_000913	4638927	0	C	A	bias_e_value=823747	bias_p_value=0.177469	consensus_score=54.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.0427354	major_base=A	major_cov=10/12	major_frequency=8.800e-01	minor_base=C	minor_cov=1/2	new_cov=10/12	polymorphism_frequency=8.800e-01	polymorphism_score=3.2	prediction=consensus	ref_cov=1/2	total_cov=11/14
RA	1875	.	NC_000913	4639005	0	G	C	bias_e_value=4400720	bias_p_value=0.948094	consensus_score=74.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.695612	major_base=C	major_cov=11/16	major_frequency=9.000e-01	minor_base=G	minor_cov=1/2	new_cov=11/16	polymorphism_frequency=9.000e-01	polymorphism_score=3.4	prediction=consensus	ref_cov=1/2	total_cov=12/18
RA	1876	.	NC_000913	4639023	0	A	G	bias_e_value=4258970	bias_p_value=0.917554	consensus_score=70.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.622461	major_base=G	major_cov=11/16	major_frequency=9.000e-01	minor_base=A	minor_cov=1/2	new_cov=11/16	polymorphism_frequency=9.000e-01	polymorphism_score=0.9	prediction=consensus	ref_cov=1/2	total_cov=12/18
RA	1877	.	NC_000913	4639053	0	T	G	bias_e_value=4195670	bias_p_value=0.903918	consensus_score=75.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.594996	major_base=G	major_cov=13/15	major_frequency=9.032e-01	minor_base=T	minor_cov=1/2	new_cov=13/15	polymorphism_frequency=9.032e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/2	total_cov=14/17
RA	1878	.	NC_000913	4639217	0	C	T	bias_e_value=2614200	bias_p_value=0.563205	consensus_score=66.1	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.472367	major_base=T	major_cov=11/13	major_frequency=9.600e-01	minor_base=C	minor_cov=1/0	new_cov=11/13	polymorphism_frequency=9.600e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=13/13
RA	1879	.	NC_000913	4639261	0	A	T	bias_e_value=3351040	bias_p_value=0.721951	consensus_score=71.9	fisher_strand_p_value=0.407407	frequency=1	ks_quality_p_value=0.869705	major_base=T	major_cov=10/16	major_frequency=9.630e-01	minor_base=A	minor_cov=1/0	new_cov=10/16	polymorphism_frequency=9.630e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=11/16
RA	1880	.	NC_000913	4639284	0	A	G	bias_e_value=4595480	bias_p_value=0.990052	consensus_score=72.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.862303	major_base=G	major_cov=9/16	major_frequency=9.259e-01	minor_base=A	minor_cov=1/1	new_cov=9/16	polymorphism_frequency=9.259e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=10/17
RA	1881	.	NC_000913	4639299	0	T	C	bias_e_value=3684160	bias_p_value=0.793717	consensus_score=54.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.43096	major_base=C	major_cov=7/16	major_frequency=9.200e-01	minor_base=T	minor_cov=1/1	new_cov=7/16	polymorphism_frequency=9.200e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=8/17
RA	1882	.	NC_000913	4639303	0	T	C	bias_e_value=4390980	bias_p_value=0.945996	consensus_score=49.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.689898	major_base=C	major_cov=7/15	major_frequency=9.167e-01	minor_base=T	minor_cov=1/1	new_cov=7/15	polymorphism_frequency=9.167e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/1	total_cov=8/16
RA	1883	.	NC_000913	4639440	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=23.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=4/9	major_frequency=8.667e-01	minor_base=G	minor_cov=0/2	new_cov=4/9	polymorphism_frequency=8.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=5/12
RA	1884	.	NC_000913	4639502	0	C	T	bias_e_value=3345810	bias_p_value=0.720824	consensus_score=26.1	fisher_strand_p_value=0.357143	frequency=1	ks_quality_p_value=0.989071	major_base=T	major_cov=4/9	major_frequency=9.286e-01	minor_base=C	minor_cov=1/0	new_cov=4/9	polymorphism_frequency=9.286e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=1/0	total_cov=5/9
RA	1885	.	NC_000913	4639510	0	G	C	bias_e_value=4525420	bias_p_value=0.974959	consensus_score=27.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.784723	major_base=C	major_cov=4/7	major_frequency=9.167e-01	minor_base=G	minor_cov=0/1	new_cov=4/7	polymorphism_frequency=9.167e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/1	total_cov=4/8
RA	1886	.	NC_000913	4639512	0	G	A	bias_e_value=4381920	bias_p_value=0.944043	consensus_score=26.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.684691	major_base=A	major_cov=4/7	major_frequency=9.167e-01	minor_base=G	minor_cov=0/1	new_cov=4/7	polymorphism_frequency=9.167e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=4/8
RA	1887	.	NC_000913	4639608	0	G	A	bias_e_value=2635150	bias_p_value=0.567717	consensus_score=42.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.22979	major_base=A	major_cov=9/8	major_frequency=9.444e-01	minor_base=G	minor_cov=0/1	new_cov=9/8	polymorphism_frequency=9.444e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=9/9
RA	1888	.	NC_000913	4639632	0	A	G	bias_e_value=2386880	bias_p_value=0.514231	consensus_score=39.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.195278	major_base=G	major_cov=8/7	major_frequency=9.375e-01	minor_base=A	minor_cov=0/1	new_cov=8/7	polymorphism_frequency=9.375e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=8/9
RA	1889	.	NC_000913	4639719	0	C	T	bias_e_value=2958020	bias_p_value=0.637278	consensus_score=35.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.280666	major_base=T	major_cov=9/6	major_frequency=8.824e-01	minor_base=C	minor_cov=1/1	new_cov=9/6	polymorphism_frequency=8.824e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/1	total_cov=12/7
RA	1890	.	NC_000913	4639764	0	G	A	bias_e_value=2913580	bias_p_value=0.627703	consensus_score=49.9	fisher_strand_p_value=0.280511	frequency=1	ks_quality_p_value=0.973971	major_base=A	major_cov=13/8	major_frequency=8.077e-01	minor_base=G	minor_cov=5/0	new_cov=13/8	polymorphism_frequency=8.077e-01	polymorphism_score=2.8	prediction=consensus	ref_cov=5/0	total_cov=20/8
RA	1891	.	NC_000913	4639956	0	T	C	bias_e_value=4165360	bias_p_value=0.897387	consensus_score=68.0	fisher_strand_p_value=0.66446	frequency=1	ks_quality_p_value=0.876899	major_base=C	major_cov=18/11	major_frequency=8.286e-01	minor_base=T	minor_cov=3/3	new_cov=18/11	polymorphism_frequency=8.286e-01	polymorphism_score=4.8	prediction=consensus	ref_cov=3/3	total_cov=21/14
RA	1892	.	NC_000913	4640785	0	C	T	consensus_score=51.4	frequency=1	major_base=T	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	1893	.	NC_000913	4640864	0	A	G	bias_e_value=4232190	bias_p_value=0.911785	consensus_score=39.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.610534	major_base=G	major_cov=9/7	major_frequency=8.421e-01	minor_base=A	minor_cov=2/1	new_cov=9/7	polymorphism_frequency=8.421e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=2/1	total_cov=11/8
RA	1894	.	NC_000913	4641131	0	T	C	bias_e_value=4436690	bias_p_value=0.955842	consensus_score=39.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.717938	major_base=C	major_cov=7/10	major_frequency=8.500e-01	minor_base=T	minor_cov=1/2	new_cov=7/10	polymorphism_frequency=8.500e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=1/2	total_cov=8/12
RA	1895	.	NC_000913	4641208	0	C	T	bias_e_value=4390980	bias_p_value=0.945996	consensus_score=59.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.689898	major_base=T	major_cov=12/10	major_frequency=9.167e-01	minor_base=C	minor_cov=1/1	new_cov=12/10	polymorphism_frequency=9.167e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/1	total_cov=13/11
RA	1896	.	NC_000913	4641217	0	T	A	bias_e_value=4235250	bias_p_value=0.912444	consensus_score=52.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.611875	major_base=A	major_cov=11/8	major_frequency=9.048e-01	minor_base=T	minor_cov=1/1	new_cov=11/8	polymorphism_frequency=9.048e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=1/1	total_cov=12/10
RA	1897	.	NC_000913	4641226	0	G	A	bias_e_value=3184680	bias_p_value=0.686109	consensus_score=53.6	fisher_strand_p_value=0.45	frequency=1	ks_quality_p_value=0.714022	major_base=A	major_cov=11/8	major_frequency=9.500e-01	minor_base=G	minor_cov=0/1	new_cov=11/8	polymorphism_frequency=9.500e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=11/10
RA	1898	.	NC_000913	4641296	0	T	C	consensus_score=66.5	frequency=1	major_base=C	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	1899	.	NC_000913	4641352	0	G	A	consensus_score=50.3	frequency=1	major_base=A	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	1900	.	NC_000913	4641382	0	G	A	bias_e_value=4263730	bias_p_value=0.91858	consensus_score=43.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.624635	major_base=A	major_cov=8/8	major_frequency=9.412e-01	minor_base=G	minor_cov=0/1	new_cov=8/8	polymorphism_frequency=9.412e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=8/9
RA	1901	.	NC_000913	4641428	0	G	A	bias_e_value=2292020	bias_p_value=0.493794	consensus_score=41.6	fisher_strand_p_value=0.183007	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=6/10	major_frequency=8.889e-01	minor_base=C	minor_cov=2/0	new_cov=6/10	polymorphism_frequency=8.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=8/11
RA	1902	.	NC_000913	4641439	0	T	C	bias_e_value=4596630	bias_p_value=0.9903	consensus_score=49.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.863986	major_base=C	major_cov=7/11	major_frequency=9.474e-01	minor_base=T	minor_cov=0/1	new_cov=7/11	polymorphism_frequency=9.474e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=7/12
RA	1903	.	NC_000913	4641440	0	G	A	bias_e_value=4586040	bias_p_value=0.988019	consensus_score=45.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.849253	major_base=A	major_cov=7/10	major_frequency=9.444e-01	minor_base=G	minor_cov=0/1	new_cov=7/10	polymorphism_frequency=9.444e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=7/12
RA	1904	.	NC_000913	4641483	0	C	T	bias_e_value=2556640	bias_p_value=0.550804	consensus_score=51.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.218482	major_base=T	major_cov=8/11	major_frequency=9.500e-01	minor_base=C	minor_cov=0/1	new_cov=8/11	polymorphism_frequency=9.500e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=8/12
RA	1905	.	NC_000913	4641488	0	A	G	bias_e_value=3535110	bias_p_value=0.761605	consensus_score=48.9	fisher_strand_p_value=0.521053	frequency=1	ks_quality_p_value=0.757465	major_base=G	major_cov=7/11	major_frequency=9.000e-01	minor_base=A	minor_cov=0/2	new_cov=7/11	polymorphism_frequency=9.000e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=0/2	total_cov=7/14
RA	1906	.	NC_000913	4641544	0	A	G	bias_e_value=1889130	bias_p_value=0.406995	consensus_score=48.0	fisher_strand_p_value=0.521053	frequency=1	ks_quality_p_value=0.260684	major_base=G	major_cov=7/11	major_frequency=9.000e-01	minor_base=A	minor_cov=0/2	new_cov=7/11	polymorphism_frequency=9.000e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=0/2	total_cov=7/13
MC	1907	.	NC_000913	257908	258683	767	0	left_inside_cov=1	left_outside_cov=16	right_inside_cov=0	right_outside_cov=15
MC	1908	.	NC_000913	275509	276359	0	0	left_inside_cov=0	left_outside_cov=13	right_inside_cov=3	right_outside_cov=4
MC	1909	.	NC_000913	276390	277294	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1910	.	NC_000913	278061	279081	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1911	.	NC_000913	279297	282558	617	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1912	.	NC_000913	283414	284426	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1913	.	NC_000913	284603	287561	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1914	.	NC_000913	288096	289391	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1915	.	NC_000913	289618	291859	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1916	.	NC_000913	292111	293023	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1917	.	NC_000913	293284	296039	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1918	.	NC_000913	297033	298065	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=5
MC	1919	.	NC_000913	298291	298463	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1920	.	NC_000913	298713	299528	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1921	.	NC_000913	299847	301186	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1922	.	NC_000913	302332	305351	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1923	.	NC_000913	305577	306890	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1924	.	NC_000913	306976	307358	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1925	.	NC_000913	307371	310235	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1926	.	NC_000913	310339	313388	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1927	.	NC_000913	313432	314793	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1928	.	NC_000913	314991	320045	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1929	.	NC_000913	320982	321776	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1930	.	NC_000913	322830	325866	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=3	right_outside_cov=4
MC	1931	.	NC_000913	325937	329069	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1932	.	NC_000913	329626	330309	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1933	.	NC_000913	330741	331513	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1934	.	NC_000913	331894	332233	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1935	.	NC_000913	332469	339516	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1936	.	NC_000913	339956	343469	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1937	.	NC_000913	343825	346249	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=2	right_outside_cov=4
MC	1938	.	NC_000913	346431	346985	0	0	left_inside_cov=0	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1939	.	NC_000913	347701	348989	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1940	.	NC_000913	349348	352060	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1941	.	NC_000913	352692	352962	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1942	.	NC_000913	353067	355280	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1943	.	NC_000913	355358	356446	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1944	.	NC_000913	356820	357019	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1945	.	NC_000913	357462	358698	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1946	.	NC_000913	358865	363443	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1947	.	NC_000913	363482	364289	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1948	.	NC_000913	364395	364894	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1949	.	NC_000913	365358	366025	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1950	.	NC_000913	366395	366657	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1951	.	NC_000913	367131	367388	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1952	.	NC_000913	367637	368752	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=3	right_outside_cov=4
MC	1953	.	NC_000913	368882	369805	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1954	.	NC_000913	369914	372748	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=1	right_outside_cov=14
MC	1955	.	NC_000913	574783	576318	1007	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1956	.	NC_000913	576439	578178	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1957	.	NC_000913	578211	579183	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=0	right_outside_cov=25
MC	1958	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=16	right_inside_cov=0	right_outside_cov=16
MC	1959	.	NC_000913	1411925	1418432	0	0	left_inside_cov=0	left_outside_cov=13	right_inside_cov=3	right_outside_cov=4
MC	1960	.	NC_000913	1418514	1422193	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=3	right_outside_cov=4
MC	1961	.	NC_000913	1422268	1423180	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1962	.	NC_000913	1423400	1428101	0	89	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1963	.	NC_000913	1428296	1429438	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1964	.	NC_000913	1429690	1433293	0	629	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1965	.	NC_000913	1433545	1434958	57	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1966	.	NC_000913	1978503	1979278	767	0	left_inside_cov=3	left_outside_cov=12	right_inside_cov=1	right_outside_cov=10
MC	1967	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=32	right_inside_cov=2	right_outside_cov=35
MC	1968	.	NC_000913	3423845	3424421	388	178	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1969	.	NC_000913	4235551	4236512	0	0	left_inside_cov=0	left_outside_cov=21	right_inside_cov=3	right_outside_cov=4
MC	1970	.	NC_000913	4238497	4239704	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1971	.	NC_000913	4240032	4242462	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1972	.	NC_000913	4244080	4245228	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1973	.	NC_000913	4245340	4246845	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=5
MC	1974	.	NC_000913	4247422	4248036	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1975	.	NC_000913	4248279	4249224	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1976	.	NC_000913	4249425	4249891	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1977	.	NC_000913	4250256	4250515	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1978	.	NC_000913	4250676	4250982	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=0	right_outside_cov=29
MC	1979	.	NC_000913	4519240	4521140	0	0	left_inside_cov=3	left_outside_cov=31	right_inside_cov=2	right_outside_cov=4
MC	1980	.	NC_000913	4521734	4522430	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1981	.	NC_000913	4522677	4523045	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1982	.	NC_000913	4524012	4525971	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=0	right_outside_cov=30
MC	1983	.	NC_000913	4569765	4572614	0	0	left_inside_cov=1	left_outside_cov=36	right_inside_cov=3	right_outside_cov=4
MC	1984	.	NC_000913	4573697	4574363	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1985	.	NC_000913	4574887	4576573	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1986	.	NC_000913	4577410	4577925	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1987	.	NC_000913	4578004	4580102	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1988	.	NC_000913	4580195	4581100	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1989	.	NC_000913	4581244	4581977	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1990	.	NC_000913	4582634	4583061	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1991	.	NC_000913	4583986	4584812	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=5
MC	1992	.	NC_000913	4585635	4585872	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	1993	.	NC_000913	4591289	4591595	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	1994	.	NC_000913	4621678	4623131	0	0	left_inside_cov=0	left_outside_cov=4	right_inside_cov=3	right_outside_cov=5
JC	1995	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=244	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=249	max_left_minus=209	max_left_plus=249	max_min_left=85	max_min_left_minus=66	max_min_left_plus=85	max_min_right=121	max_min_right_minus=121	max_min_right_plus=48	max_pos_hash_score=488	max_right=245	max_right_minus=245	max_right_plus=224	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.48	new_junction_read_count=14	polymorphism_frequency=1.000e+00	pos_hash_score=13	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=13
JC	1996	.	NC_000913	20703	-1	NC_000913	20704	1	-14	alignment_overlap=-14	coverage_minus=2	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=230	key=NC_000913__20703__-1__NC_000913__20704__1__-14__GCAAGAACCTGCAA__251__251__0__0	max_left=140	max_left_minus=118	max_left_plus=140	max_min_left=95	max_min_left_minus=23	max_min_left_plus=95	max_min_right=118	max_min_right_minus=118	max_min_right_plus=112	max_pos_hash_score=460	max_right=228	max_right_minus=209	max_right_plus=228	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.55	new_junction_read_count=15	polymorphism_frequency=8.414e-01	pos_hash_score=11	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.10	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=GCAAGAACCTGCAA
JC	1997	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=8	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=232	max_left_minus=232	max_left_plus=204	max_min_left=112	max_min_left_minus=112	max_min_left_plus=49	max_min_right=75	max_min_right_minus=75	max_min_right_plus=68	max_pos_hash_score=472	max_right=240	max_right_minus=234	max_right_plus=240	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.53	new_junction_read_count=15	polymorphism_frequency=9.688e-01	pos_hash_score=14	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=8	side_1_possible_overlap_registers=244	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=15
JC	1998	.	NC_000913	271762	1	NC_000913	4507456	-1	0	alignment_overlap=2	coverage_minus=7	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=242	key=NC_000913__271762__1__NC_000913__4507458__-1__2____251__251__0__0	max_left=245	max_left_minus=234	max_left_plus=245	max_min_left=98	max_min_left_minus=98	max_min_left_plus=0	max_min_right=89	max_min_right_minus=81	max_min_right_plus=89	max_pos_hash_score=484	max_right=207	max_right_minus=207	max_right_plus=89	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.76	new_junction_read_count=22	polymorphism_frequency=NA	pos_hash_score=16	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=17
JC	1999	.	NC_000913	273955	1	NC_000913	820914	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__273955__1__NC_000913__820914__1__0____251__251__1__0	max_left=245	max_left_minus=245	max_left_plus=236	max_min_left=119	max_min_left_minus=119	max_min_left_plus=74	max_min_right=122	max_min_right_minus=122	max_min_right_plus=81	max_pos_hash_score=488	max_right=246	max_right_minus=194	max_right_plus=246	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.75	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	2000	.	NC_000913	275149	-1	NC_000913	579184	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__275149__-1__NC_000913__579184__1__0____251__251__1__0	max_left=232	max_left_minus=232	max_left_plus=206	max_min_left=118	max_min_left_minus=114	max_min_left_plus=118	max_min_right=104	max_min_right_minus=83	max_min_right_plus=104	max_pos_hash_score=488	max_right=236	max_right_minus=226	max_right_plus=236	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.86	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24
JC	2001	.	NC_000913	275149	-1	NC_000913	820917	-1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__275149__-1__NC_000913__820918__-1__1____251__251__1__0	max_left=241	max_left_minus=232	max_left_plus=241	max_min_left=124	max_min_left_minus=122	max_min_left_plus=124	max_min_right=111	max_min_right_minus=111	max_min_right_plus=110	max_pos_hash_score=486	max_right=198	max_right_minus=187	max_right_plus=198	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.89	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=26
JC	2002	.	NC_000913	275508	-1	NC_000913	372749	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__275508__-1__NC_000913__372739__1__10____251__251__0__0	max_left=232	max_left_minus=179	max_left_plus=232	max_min_left=114	max_min_left_minus=0	max_min_left_plus=114	max_min_right=109	max_min_right_minus=109	max_min_right_plus=107	max_pos_hash_score=468	max_right=238	max_right_minus=109	max_right_plus=238	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.46	new_junction_read_count=13	polymorphism_frequency=1.000e+00	pos_hash_score=13	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=13
JC	2003	.	NC_000913	290634	1	NC_000913	1105699	1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__290634__1__NC_000913__1105699__1__0____251__251__1__0	max_left=239	max_left_minus=234	max_left_plus=239	max_min_left=117	max_min_left_minus=117	max_min_left_plus=117	max_min_right=121	max_min_right_minus=121	max_min_right_plus=118	max_pos_hash_score=488	max_right=246	max_right_minus=246	max_right_plus=244	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28
JC	2004	.	NC_000913	291401	-1	NC_000913	1105707	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__291401__-1__NC_000913__1105707__-1__0____251__251__1__0	max_left=248	max_left_minus=189	max_left_plus=248	max_min_left=97	max_min_left_minus=4	max_min_left_plus=97	max_min_right=122	max_min_right_minus=117	max_min_right_plus=122	max_pos_hash_score=488	max_right=246	max_right_minus=246	max_right_plus=194	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.41	new_junction_read_count=12	polymorphism_frequency=1.000e+00	pos_hash_score=12	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=12
JC	2005	.	NC_000913	387208	1	NC_000913	2730110	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.598e-02	junction_possible_overlap_registers=241	key=NC_000913__387208__1__NC_000913__2730113__-1__3____251__251__0__1	max_left=43	max_left_minus=43	max_left_plus=43	max_min_left=43	max_min_left_minus=43	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=482	max_right=245	max_right_minus=150	max_right_plus=245	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.10	new_junction_read_count=3	polymorphism_frequency=6.598e-02	pos_hash_score=3	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.47	side_1_overlap=3	side_1_possible_overlap_registers=244	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	2006	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=9	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=240	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=229	max_left_minus=218	max_left_plus=229	max_min_left=61	max_min_left_minus=61	max_min_left_plus=57	max_min_right=102	max_min_right_minus=102	max_min_right_plus=90	max_pos_hash_score=480	max_right=240	max_right_minus=240	max_right_plus=199	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.56	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=15
JC	2007	.	NC_000913	1396044	1	NC_000913	1586576	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1396044__1__NC_000913__1586576__1__0____251__251__1__0	max_left=245	max_left_minus=223	max_left_plus=245	max_min_left=124	max_min_left_minus=75	max_min_left_plus=124	max_min_right=123	max_min_right_minus=68	max_min_right_plus=123	max_pos_hash_score=488	max_right=217	max_right_minus=175	max_right_plus=217	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.82	new_junction_read_count=24	polymorphism_frequency=9.594e-01	pos_hash_score=24	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=24
JC	2008	.	NC_000913	1397238	-1	NC_000913	1586579	-1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1397238__-1__NC_000913__1586580__-1__1____251__251__1__0	max_left=237	max_left_minus=237	max_left_plus=217	max_min_left=81	max_min_left_minus=81	max_min_left_plus=76	max_min_right=124	max_min_right_minus=124	max_min_right_plus=33	max_pos_hash_score=486	max_right=246	max_right_minus=235	max_right_plus=246	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.69	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20
JC	2009	.	NC_000913	1411924	-1	NC_000913	1434985	1	0	alignment_overlap=26	coverage_minus=5	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=218	key=NC_000913__1411924__-1__NC_000913__1434959__1__26____251__251__0__0	max_left=207	max_left_minus=203	max_left_plus=207	max_min_left=78	max_min_left_minus=28	max_min_left_plus=78	max_min_right=112	max_min_right_minus=78	max_min_right_plus=112	max_pos_hash_score=436	max_right=220	max_right_minus=220	max_right_plus=168	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.46	new_junction_read_count=12	polymorphism_frequency=8.889e-01	pos_hash_score=12	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.12	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=12
JC	2010	.	NC_000913	1469240	-1	NC_000913	1655878	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1469240__-1__NC_000913__1655878__-1__0____251__251__1__0	max_left=246	max_left_minus=246	max_left_plus=242	max_min_left=102	max_min_left_minus=102	max_min_left_plus=91	max_min_right=124	max_min_right_minus=123	max_min_right_plus=124	max_pos_hash_score=488	max_right=212	max_right_minus=212	max_right_plus=158	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.89	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=26
JC	2011	.	NC_000913	1651548	-1	NC_000913	1655874	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1651548__-1__NC_000913__1655874__1__0____251__251__1__0	max_left=235	max_left_minus=235	max_left_plus=235	max_min_left=118	max_min_left_minus=118	max_min_left_plus=109	max_min_right=104	max_min_right_minus=104	max_min_right_plus=97	max_pos_hash_score=488	max_right=249	max_right_minus=249	max_right_plus=226	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.93	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	2012	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=5	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____251__251__0__0	max_left=231	max_left_minus=231	max_left_plus=108	max_min_left=117	max_min_left_minus=117	max_min_left_plus=90	max_min_right=77	max_min_right_minus=77	max_min_right_plus=77	max_pos_hash_score=472	max_right=209	max_right_minus=209	max_right_plus=157	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.32	new_junction_read_count=9	polymorphism_frequency=8.612e-01	pos_hash_score=9	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.10	side_1_overlap=8	side_1_possible_overlap_registers=244	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9
JC	2013	.	NC_000913	1979270	-1	NC_000913	4569764	-1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1979270__-1__NC_000913__4569764__-1__0____251__251__1__0	max_left=238	max_left_minus=236	max_left_plus=238	max_min_left=120	max_min_left_minus=120	max_min_left_plus=116	max_min_right=117	max_min_right_minus=92	max_min_right_plus=117	max_pos_hash_score=488	max_right=243	max_right_minus=201	max_right_plus=243	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=35	polymorphism_frequency=9.722e-01	pos_hash_score=32	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=34
JC	2014	.	NC_000913	2170171	1	NC_000913	4519239	-1	-70	alignment_overlap=-70	coverage_minus=7	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=174	key=NC_000913__2170171__1__NC_000913__4519239__-1__-70__CAACACTTTAAAATGCCCTATATAGGGTTAACCAGTAATTATCTGTATGATAGCTTTGAGTTCGGGAGGA__251__251__1__0	max_left=168	max_left_minus=94	max_left_plus=168	max_min_left=89	max_min_left_minus=72	max_min_left_plus=89	max_min_right=80	max_min_right_minus=79	max_min_right_plus=80	max_pos_hash_score=348	max_right=178	max_right_minus=168	max_right_plus=178	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=24	polymorphism_frequency=NA	pos_hash_score=21	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=21	unique_read_sequence=CAACACTTTAAAATGCCCTATATAGGGTTAACCAGTAATTATCTGTATGATAGCTTTGAGTTCGGGAGGA
JC	2015	.	NC_000913	2238374	1	NC_000913	3583428	1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2238374__1__NC_000913__3583428__1__0____251__251__0__1	max_left=243	max_left_minus=220	max_left_plus=243	max_min_left=120	max_min_left_minus=120	max_min_left_plus=110	max_min_right=117	max_min_right_minus=70	max_min_right_plus=117	max_pos_hash_score=488	max_right=248	max_right_minus=248	max_right_plus=240	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=37	polymorphism_frequency=9.727e-01	pos_hash_score=35	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=235	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=36
JC	2016	.	NC_000913	2238382	-1	NC_000913	3584195	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2238382__-1__NC_000913__3584195__-1__0____251__251__0__1	max_left=242	max_left_minus=194	max_left_plus=242	max_min_left=88	max_min_left_minus=88	max_min_left_plus=0	max_min_right=124	max_min_right_minus=124	max_min_right_plus=71	max_pos_hash_score=488	max_right=232	max_right_minus=232	max_right_plus=71	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.45	new_junction_read_count=13	polymorphism_frequency=9.260e-01	pos_hash_score=12	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=235	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=13
JC	2017	.	NC_000913	2288919	1	NC_000913	3131469	1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__2288919__1__NC_000913__3131468__1__1____251__251__1__0	max_left=239	max_left_minus=208	max_left_plus=239	max_min_left=119	max_min_left_minus=115	max_min_left_plus=119	max_min_right=113	max_min_right_minus=101	max_min_right_plus=113	max_pos_hash_score=486	max_right=246	max_right_minus=235	max_right_plus=246	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.83	new_junction_read_count=24	polymorphism_frequency=9.600e-01	pos_hash_score=23	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=23
JC	2018	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=22	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=229	max_left_minus=229	max_left_plus=207	max_min_left=118	max_min_left_minus=118	max_min_left_plus=117	max_min_right=120	max_min_right_minus=91	max_min_right_plus=120	max_pos_hash_score=472	max_right=242	max_right_minus=242	max_right_plus=195	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	2019	.	NC_000913	2812450	-1	NC_000913	2812532	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=9.041e-02	junction_possible_overlap_registers=239	key=NC_000913__2812450__-1__NC_000913__2812537__-1__5____251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=90	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=478	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.10	new_junction_read_count=3	polymorphism_frequency=9.041e-02	pos_hash_score=3	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=5	side_1_possible_overlap_registers=244	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=3
JC	2020	.	NC_000913	3186096	1	NC_000913	4365526	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3186096__1__NC_000913__4365526__1__0____251__251__1__0	max_left=240	max_left_minus=217	max_left_plus=240	max_min_left=116	max_min_left_minus=116	max_min_left_plus=103	max_min_right=102	max_min_right_minus=102	max_min_right_plus=80	max_pos_hash_score=488	max_right=249	max_right_minus=249	max_right_plus=248	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.93	new_junction_read_count=27	polymorphism_frequency=8.686e-01	pos_hash_score=25	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.14	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=26
JC	2021	.	NC_000913	3187426	-1	NC_000913	4365530	-1	0	alignment_overlap=1	coverage_minus=9	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__3187426__-1__NC_000913__4365531__-1__1____251__251__1__0	max_left=243	max_left_minus=243	max_left_plus=243	max_min_left=117	max_min_left_minus=117	max_min_left_plus=87	max_min_right=122	max_min_right_minus=110	max_min_right_plus=122	max_pos_hash_score=486	max_right=223	max_right_minus=207	max_right_plus=223	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=24	polymorphism_frequency=8.546e-01	pos_hash_score=21	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.14	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=21
JC	2022	.	NC_000913	3452998	1	NC_000913	3453250	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=6.569e-02	junction_possible_overlap_registers=240	key=NC_000913__3452998__1__NC_000913__3453246__1__4____251__251__0__0	max_left=238	max_left_minus=238	max_left_plus=167	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=79	max_min_right_minus=57	max_min_right_plus=79	max_pos_hash_score=480	max_right=79	max_right_minus=57	max_right_plus=79	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.10	new_junction_read_count=3	polymorphism_frequency=6.569e-02	pos_hash_score=3	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.37	side_1_overlap=4	side_1_possible_overlap_registers=244	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.60	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=3
JC	2023	.	NC_000913	3583428	1	NC_000913	4235550	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3583428__1__NC_000913__4235550__-1__0____251__251__1__0	max_left=238	max_left_minus=238	max_left_plus=237	max_min_left=124	max_min_left_minus=124	max_min_left_plus=88	max_min_right=125	max_min_right_minus=116	max_min_right_plus=125	max_pos_hash_score=488	max_right=241	max_right_minus=240	max_right_plus=241	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.72	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	2024	.	NC_000913	3583428	1	NC_000913	4525972	1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3583428__1__NC_000913__4525972__1__0____251__251__1__0	max_left=249	max_left_minus=249	max_left_plus=225	max_min_left=120	max_min_left_minus=45	max_min_left_plus=120	max_min_right=114	max_min_right_minus=114	max_min_right_plus=87	max_pos_hash_score=488	max_right=248	max_right_minus=248	max_right_plus=242	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	2025	.	NC_000913	3583428	1	NC_000913	4541425	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3583428__1__NC_000913__4541425__1__0____251__251__1__0	max_left=247	max_left_minus=210	max_left_plus=247	max_min_left=116	max_min_left_minus=116	max_min_left_plus=107	max_min_right=124	max_min_right_minus=41	max_min_right_plus=124	max_pos_hash_score=488	max_right=244	max_right_minus=244	max_right_plus=208	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.75	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22
JC	2026	.	NC_000913	3584195	-1	NC_000913	4250983	1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3584195__-1__NC_000913__4250983__1__0____251__251__1__0	max_left=242	max_left_minus=161	max_left_plus=242	max_min_left=124	max_min_left_minus=120	max_min_left_plus=124	max_min_right=121	max_min_right_minus=90	max_min_right_plus=121	max_pos_hash_score=488	max_right=243	max_right_minus=211	max_right_plus=243	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	2027	.	NC_000913	3584195	-1	NC_000913	4541432	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3584195__-1__NC_000913__4541432__-1__0____251__251__1__0	max_left=239	max_left_minus=212	max_left_plus=239	max_min_left=120	max_min_left_minus=119	max_min_left_plus=120	max_min_right=122	max_min_right_minus=122	max_min_right_plus=118	max_pos_hash_score=488	max_right=244	max_right_minus=244	max_right_plus=243	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=36	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=36
JC	2028	.	NC_000913	4124498	1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__4124498__1__NC_000913__4499511__-1__0____251__251__0__1	max_left=233	max_left_minus=233	max_left_plus=215	max_min_left=124	max_min_left_minus=122	max_min_left_plus=124	max_min_right=118	max_min_right_minus=118	max_min_right_plus=100	max_pos_hash_score=488	max_right=242	max_right_minus=242	max_right_plus=233	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.99	new_junction_read_count=29	polymorphism_frequency=9.342e-01	pos_hash_score=29	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.07	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=29
JC	2029	.	NC_000913	4124502	-1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__4124503__-1__NC_000913__4498181__1__1____251__251__0__1	max_left=247	max_left_minus=230	max_left_plus=247	max_min_left=123	max_min_left_minus=123	max_min_left_plus=122	max_min_right=124	max_min_right_minus=83	max_min_right_plus=124	max_pos_hash_score=486	max_right=219	max_right_minus=211	max_right_plus=219	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.86	new_junction_read_count=25	polymorphism_frequency=9.608e-01	pos_hash_score=24	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=25
JC	2030	.	NC_000913	4498181	-1	NC_000913	4499518	1	0	alignment_overlap=6	coverage_minus=4	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=7.207e-01	junction_possible_overlap_registers=238	key=NC_000913__4498181__-1__NC_000913__4499512__1__6____251__251__0__0	max_left=244	max_left_minus=244	max_left_plus=183	max_min_left=96	max_min_left_minus=56	max_min_left_plus=96	max_min_right=109	max_min_right_minus=99	max_min_right_plus=109	max_pos_hash_score=476	max_right=211	max_right_minus=188	max_right_plus=211	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.32	new_junction_read_count=9	polymorphism_frequency=7.207e-01	pos_hash_score=8	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=6	side_1_possible_overlap_registers=244	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.21	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=8
JC	2031	.	NC_000913	4620827	-1	NC_000913	4620871	1	-66	alignment_overlap=-66	coverage_minus=0	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=178	key=NC_000913__4620827__-1__NC_000913__4620871__1__-66__AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT__251__251__0__0	max_left=184	max_left_minus=0	max_left_plus=184	max_min_left=53	max_min_left_minus=0	max_min_left_plus=53	max_min_right=90	max_min_right_minus=0	max_min_right_plus=90	max_pos_hash_score=356	max_right=171	max_right_minus=0	max_right_plus=171	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.70	new_junction_read_count=15	polymorphism_frequency=9.320e-01	pos_hash_score=15	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.07	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=15	unique_read_sequence=AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT
UN	2032	.	NC_000913	5067	5067
UN	2033	.	NC_000913	7093	7093
UN	2034	.	NC_000913	15441	15441
UN	2035	.	NC_000913	15458	15458
UN	2036	.	NC_000913	15461	15461
UN	2037	.	NC_000913	15463	15467
UN	2038	.	NC_000913	15469	15472
UN	2039	.	NC_000913	15474	16570
UN	2040	.	NC_000913	16572	16572
UN	2041	.	NC_000913	16575	16575
UN	2042	.	NC_000913	16589	16589
UN	2043	.	NC_000913	16591	16591
UN	2044	.	NC_000913	16593	16593
UN	2045	.	NC_000913	17120	17120
UN	2046	.	NC_000913	17126	17126
UN	2047	.	NC_000913	17129	17131
UN	2048	.	NC_000913	17142	17142
UN	2049	.	NC_000913	17146	17146
UN	2050	.	NC_000913	17228	17228
UN	2051	.	NC_000913	19795	20580
UN	2052	.	NC_000913	59155	59205
UN	2053	.	NC_000913	59208	59215
UN	2054	.	NC_000913	59218	59218
UN	2055	.	NC_000913	59220	59220
UN	2056	.	NC_000913	59222	59224
UN	2057	.	NC_000913	59226	59231
UN	2058	.	NC_000913	59233	59235
UN	2059	.	NC_000913	59237	59260
UN	2060	.	NC_000913	59262	59265
UN	2061	.	NC_000913	59269	59272
UN	2062	.	NC_000913	59274	59276
UN	2063	.	NC_000913	59278	59279
UN	2064	.	NC_000913	59281	59281
UN	2065	.	NC_000913	59284	59284
UN	2066	.	NC_000913	59286	59288
UN	2067	.	NC_000913	59299	59299
UN	2068	.	NC_000913	84008	84008
UN	2069	.	NC_000913	84018	84018
UN	2070	.	NC_000913	84022	84022
UN	2071	.	NC_000913	84045	84045
UN	2072	.	NC_000913	84050	84050
UN	2073	.	NC_000913	84054	84059
UN	2074	.	NC_000913	84061	84061
UN	2075	.	NC_000913	84063	84063
UN	2076	.	NC_000913	84065	84065
UN	2077	.	NC_000913	84067	84067
UN	2078	.	NC_000913	84070	84070
UN	2079	.	NC_000913	84072	84076
UN	2080	.	NC_000913	84078	84083
UN	2081	.	NC_000913	84085	84088
UN	2082	.	NC_000913	84092	84092
UN	2083	.	NC_000913	223884	223888
UN	2084	.	NC_000913	223890	223891
UN	2085	.	NC_000913	223894	223894
UN	2086	.	NC_000913	223898	224582
UN	2087	.	NC_000913	224585	224586
UN	2088	.	NC_000913	225102	225102
UN	2089	.	NC_000913	225105	225409
UN	2090	.	NC_000913	225411	225411
UN	2091	.	NC_000913	225421	225421
UN	2092	.	NC_000913	225423	225423
UN	2093	.	NC_000913	225430	225430
UN	2094	.	NC_000913	225432	225433
UN	2095	.	NC_000913	225435	225435
UN	2096	.	NC_000913	227151	228470
UN	2097	.	NC_000913	238233	238233
UN	2098	.	NC_000913	238239	238239
UN	2099	.	NC_000913	238254	238254
UN	2100	.	NC_000913	238258	238258
UN	2101	.	NC_000913	238264	238265
UN	2102	.	NC_000913	238267	238267
UN	2103	.	NC_000913	238269	238269
UN	2104	.	NC_000913	238272	238272
UN	2105	.	NC_000913	238275	238291
UN	2106	.	NC_000913	238293	238325
UN	2107	.	NC_000913	238344	238344
UN	2108	.	NC_000913	238360	238360
UN	2109	.	NC_000913	257908	258683
UN	2110	.	NC_000913	270729	270729
UN	2111	.	NC_000913	270731	270732
UN	2112	.	NC_000913	270735	271076
UN	2113	.	NC_000913	274169	274169
UN	2114	.	NC_000913	274172	274175
UN	2115	.	NC_000913	274177	274931
UN	2116	.	NC_000913	275509	277365
UN	2117	.	NC_000913	277367	277842
UN	2118	.	NC_000913	277847	277847
UN	2119	.	NC_000913	277854	277854
UN	2120	.	NC_000913	277860	277956
UN	2121	.	NC_000913	277959	277959
UN	2122	.	NC_000913	277962	277966
UN	2123	.	NC_000913	277968	277971
UN	2124	.	NC_000913	277974	277977
UN	2125	.	NC_000913	277979	277979
UN	2126	.	NC_000913	277983	277983
UN	2127	.	NC_000913	277985	277985
UN	2128	.	NC_000913	277988	277991
UN	2129	.	NC_000913	277993	277994
UN	2130	.	NC_000913	277997	277997
UN	2131	.	NC_000913	278000	278000
UN	2132	.	NC_000913	278002	278002
UN	2133	.	NC_000913	278004	278005
UN	2134	.	NC_000913	278008	278008
UN	2135	.	NC_000913	278010	278010
UN	2136	.	NC_000913	278012	278015
UN	2137	.	NC_000913	278017	279089
UN	2138	.	NC_000913	279091	279093
UN	2139	.	NC_000913	279095	279097
UN	2140	.	NC_000913	279099	279099
UN	2141	.	NC_000913	279101	279103
UN	2142	.	NC_000913	279106	279106
UN	2143	.	NC_000913	279108	279108
UN	2144	.	NC_000913	279110	279119
UN	2145	.	NC_000913	279121	279127
UN	2146	.	NC_000913	279129	279129
UN	2147	.	NC_000913	279131	287584
UN	2148	.	NC_000913	287587	287591
UN	2149	.	NC_000913	287593	287597
UN	2150	.	NC_000913	287603	287603
UN	2151	.	NC_000913	287605	287611
UN	2152	.	NC_000913	287613	287621
UN	2153	.	NC_000913	287623	289539
UN	2154	.	NC_000913	289542	289542
UN	2155	.	NC_000913	289544	289546
UN	2156	.	NC_000913	289548	289556
UN	2157	.	NC_000913	289558	289564
UN	2158	.	NC_000913	289566	289573
UN	2159	.	NC_000913	289575	293113
UN	2160	.	NC_000913	293117	293117
UN	2161	.	NC_000913	293119	293119
UN	2162	.	NC_000913	293121	293121
UN	2163	.	NC_000913	293127	293127
UN	2164	.	NC_000913	293131	293131
UN	2165	.	NC_000913	293135	293135
UN	2166	.	NC_000913	293164	293164
UN	2167	.	NC_000913	293179	293179
UN	2168	.	NC_000913	293181	293181
UN	2169	.	NC_000913	293184	293184
UN	2170	.	NC_000913	293186	293186
UN	2171	.	NC_000913	293188	293188
UN	2172	.	NC_000913	293193	293193
UN	2173	.	NC_000913	293200	293200
UN	2174	.	NC_000913	293202	293202
UN	2175	.	NC_000913	293204	293208
UN	2176	.	NC_000913	293212	293212
UN	2177	.	NC_000913	293215	293215
UN	2178	.	NC_000913	293217	293217
UN	2179	.	NC_000913	293221	293222
UN	2180	.	NC_000913	293225	293225
UN	2181	.	NC_000913	293232	293232
UN	2182	.	NC_000913	293236	293241
UN	2183	.	NC_000913	293243	293259
UN	2184	.	NC_000913	293261	293264
UN	2185	.	NC_000913	293268	296069
UN	2186	.	NC_000913	296072	296072
UN	2187	.	NC_000913	296075	296077
UN	2188	.	NC_000913	296079	296082
UN	2189	.	NC_000913	296084	296092
UN	2190	.	NC_000913	296096	296096
UN	2191	.	NC_000913	296105	296106
UN	2192	.	NC_000913	296113	296113
UN	2193	.	NC_000913	296129	296131
UN	2194	.	NC_000913	296133	296133
UN	2195	.	NC_000913	296138	296138
UN	2196	.	NC_000913	296152	296171
UN	2197	.	NC_000913	296173	296174
UN	2198	.	NC_000913	296176	296177
UN	2199	.	NC_000913	296179	296182
UN	2200	.	NC_000913	296190	296191
UN	2201	.	NC_000913	296212	296212
UN	2202	.	NC_000913	296253	296253
UN	2203	.	NC_000913	296266	296266
UN	2204	.	NC_000913	296285	296285
UN	2205	.	NC_000913	296288	296288
UN	2206	.	NC_000913	296294	296294
UN	2207	.	NC_000913	296304	296304
UN	2208	.	NC_000913	296308	296315
UN	2209	.	NC_000913	296320	296324
UN	2210	.	NC_000913	296326	296327
UN	2211	.	NC_000913	296330	296564
UN	2212	.	NC_000913	296569	296569
UN	2213	.	NC_000913	296572	296572
UN	2214	.	NC_000913	296577	296579
UN	2215	.	NC_000913	296657	296657
UN	2216	.	NC_000913	296673	296673
UN	2217	.	NC_000913	296751	296752
UN	2218	.	NC_000913	296755	296757
UN	2219	.	NC_000913	296759	296759
UN	2220	.	NC_000913	296764	296765
UN	2221	.	NC_000913	296767	296767
UN	2222	.	NC_000913	296769	296773
UN	2223	.	NC_000913	296808	296811
UN	2224	.	NC_000913	296813	296813
UN	2225	.	NC_000913	296817	296817
UN	2226	.	NC_000913	296819	296820
UN	2227	.	NC_000913	296822	296826
UN	2228	.	NC_000913	296828	298084
UN	2229	.	NC_000913	298087	298091
UN	2230	.	NC_000913	298095	298095
UN	2231	.	NC_000913	298097	298098
UN	2232	.	NC_000913	298103	298122
UN	2233	.	NC_000913	298124	298127
UN	2234	.	NC_000913	298130	298130
UN	2235	.	NC_000913	298137	298137
UN	2236	.	NC_000913	298139	298139
UN	2237	.	NC_000913	298146	298147
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UN	2239	.	NC_000913	298158	298158
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UN	4622	.	NC_000913	4171869	4171869
UN	4623	.	NC_000913	4171874	4171921
UN	4624	.	NC_000913	4171926	4171926
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UN	4627	.	NC_000913	4176722	4176722
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UN	4629	.	NC_000913	4176902	4176903
UN	4630	.	NC_000913	4176906	4176906
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UN	4680	.	NC_000913	4236854	4236855
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UN	4682	.	NC_000913	4236861	4236861
UN	4683	.	NC_000913	4236863	4236863
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UN	4685	.	NC_000913	4236868	4236868
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UN	4720	.	NC_000913	4239872	4239872
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UN	4732	.	NC_000913	4243212	4243212
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UN	4734	.	NC_000913	4243237	4243237
UN	4735	.	NC_000913	4243261	4243261
UN	4736	.	NC_000913	4243272	4243272
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UN	4753	.	NC_000913	4246928	4246929
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UN	4755	.	NC_000913	4246938	4246938
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UN	4822	.	NC_000913	4276038	4276038
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UN	4901	.	NC_000913	4523331	4523331
UN	4902	.	NC_000913	4523333	4523333
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UN	4904	.	NC_000913	4523352	4523358
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UN	4906	.	NC_000913	4523372	4523372
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UN	4908	.	NC_000913	4523471	4523471
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UN	4910	.	NC_000913	4523485	4523485
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UN	4925	.	NC_000913	4523793	4523793
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UN	4986	.	NC_000913	4576800	4576800
UN	4987	.	NC_000913	4576809	4581175
UN	4988	.	NC_000913	4581178	4581180
UN	4989	.	NC_000913	4581182	4581188
UN	4990	.	NC_000913	4581190	4582444
UN	4991	.	NC_000913	4582451	4582453
UN	4992	.	NC_000913	4582456	4582456
UN	4993	.	NC_000913	4582458	4582462
UN	4994	.	NC_000913	4582464	4582471
UN	4995	.	NC_000913	4582473	4582475
UN	4996	.	NC_000913	4582478	4582479
UN	4997	.	NC_000913	4582481	4582493
UN	4998	.	NC_000913	4582495	4582496
UN	4999	.	NC_000913	4582498	4583111
UN	5000	.	NC_000913	4583113	4583117
UN	5001	.	NC_000913	4583119	4583128
UN	5002	.	NC_000913	4583130	4583131
UN	5003	.	NC_000913	4583134	4583135
UN	5004	.	NC_000913	4583142	4583142
UN	5005	.	NC_000913	4583145	4583147
UN	5006	.	NC_000913	4583149	4583149
UN	5007	.	NC_000913	4583152	4583154
UN	5008	.	NC_000913	4583156	4583158
UN	5009	.	NC_000913	4583160	4583163
UN	5010	.	NC_000913	4583167	4583168
UN	5011	.	NC_000913	4583170	4583182
UN	5012	.	NC_000913	4583184	4583185
UN	5013	.	NC_000913	4583187	4583192
UN	5014	.	NC_000913	4583195	4583780
UN	5015	.	NC_000913	4583785	4583785
UN	5016	.	NC_000913	4583787	4583787
UN	5017	.	NC_000913	4583795	4583797
UN	5018	.	NC_000913	4583802	4583802
UN	5019	.	NC_000913	4583804	4583804
UN	5020	.	NC_000913	4583808	4583808
UN	5021	.	NC_000913	4583813	4583813
UN	5022	.	NC_000913	4583819	4583819
UN	5023	.	NC_000913	4583821	4583829
UN	5024	.	NC_000913	4583832	4583833
UN	5025	.	NC_000913	4583835	4583841
UN	5026	.	NC_000913	4583843	4583843
UN	5027	.	NC_000913	4583846	4583848
UN	5028	.	NC_000913	4583850	4583853
UN	5029	.	NC_000913	4583855	4584813
UN	5030	.	NC_000913	4584815	4584815
UN	5031	.	NC_000913	4584819	4584819
UN	5032	.	NC_000913	4584841	4584841
UN	5033	.	NC_000913	4584849	4584849
UN	5034	.	NC_000913	4584853	4584853
UN	5035	.	NC_000913	4584868	4584869
UN	5036	.	NC_000913	4584876	4584878
UN	5037	.	NC_000913	4584887	4584887
UN	5038	.	NC_000913	4584890	4584890
UN	5039	.	NC_000913	4584893	4584894
UN	5040	.	NC_000913	4584900	4584900
UN	5041	.	NC_000913	4584904	4584904
UN	5042	.	NC_000913	4584909	4584914
UN	5043	.	NC_000913	4584916	4584916
UN	5044	.	NC_000913	4584918	4584918
UN	5045	.	NC_000913	4584928	4584931
UN	5046	.	NC_000913	4584933	4584933
UN	5047	.	NC_000913	4584936	4585404
UN	5048	.	NC_000913	4585408	4585410
UN	5049	.	NC_000913	4585413	4585413
UN	5050	.	NC_000913	4585416	4585574
UN	5051	.	NC_000913	4585576	4585992
UN	5052	.	NC_000913	4585994	4586026
UN	5053	.	NC_000913	4586028	4586054
UN	5054	.	NC_000913	4586071	4586071
UN	5055	.	NC_000913	4586077	4586077
UN	5056	.	NC_000913	4586087	4586087
UN	5057	.	NC_000913	4586096	4586096
UN	5058	.	NC_000913	4586099	4586100
UN	5059	.	NC_000913	4586102	4586107
UN	5060	.	NC_000913	4586109	4586111
UN	5061	.	NC_000913	4586115	4586116
UN	5062	.	NC_000913	4586119	4586119
UN	5063	.	NC_000913	4586121	4586168
UN	5064	.	NC_000913	4586170	4586171
UN	5065	.	NC_000913	4586174	4586176
UN	5066	.	NC_000913	4586178	4586179
UN	5067	.	NC_000913	4586185	4586185
UN	5068	.	NC_000913	4586189	4586190
UN	5069	.	NC_000913	4586194	4586194
UN	5070	.	NC_000913	4586197	4586197
UN	5071	.	NC_000913	4586200	4586201
UN	5072	.	NC_000913	4586204	4586205
UN	5073	.	NC_000913	4586208	4586208
UN	5074	.	NC_000913	4586210	4586214
UN	5075	.	NC_000913	4586216	4586221
UN	5076	.	NC_000913	4586225	4586245
UN	5077	.	NC_000913	4586247	4589437
UN	5078	.	NC_000913	4589439	4589448
UN	5079	.	NC_000913	4589451	4589462
UN	5080	.	NC_000913	4589465	4589465
UN	5081	.	NC_000913	4589467	4589470
UN	5082	.	NC_000913	4589472	4589478
UN	5083	.	NC_000913	4589480	4589491
UN	5084	.	NC_000913	4589494	4589494
UN	5085	.	NC_000913	4589498	4589501
UN	5086	.	NC_000913	4589505	4589505
UN	5087	.	NC_000913	4589508	4589508
UN	5088	.	NC_000913	4589510	4589514
UN	5089	.	NC_000913	4589522	4589522
UN	5090	.	NC_000913	4589525	4589526
UN	5091	.	NC_000913	4589532	4589532
UN	5092	.	NC_000913	4589535	4589535
UN	5093	.	NC_000913	4589538	4589540
UN	5094	.	NC_000913	4589543	4589544
UN	5095	.	NC_000913	4589546	4589550
UN	5096	.	NC_000913	4589552	4589552
UN	5097	.	NC_000913	4589554	4590266
UN	5098	.	NC_000913	4590268	4590307
UN	5099	.	NC_000913	4590315	4590316
UN	5100	.	NC_000913	4590318	4590320
UN	5101	.	NC_000913	4590325	4590328
UN	5102	.	NC_000913	4590333	4590333
UN	5103	.	NC_000913	4590336	4590336
UN	5104	.	NC_000913	4590340	4590340
UN	5105	.	NC_000913	4590343	4590343
UN	5106	.	NC_000913	4590345	4590345
UN	5107	.	NC_000913	4590351	4590355
UN	5108	.	NC_000913	4590358	4590358
UN	5109	.	NC_000913	4590366	4590366
UN	5110	.	NC_000913	4590374	4590377
UN	5111	.	NC_000913	4590381	4590381
UN	5112	.	NC_000913	4590387	4590387
UN	5113	.	NC_000913	4590389	4590389
UN	5114	.	NC_000913	4590391	4590392
UN	5115	.	NC_000913	4590394	4590394
UN	5116	.	NC_000913	4590396	4590396
UN	5117	.	NC_000913	4590399	4590400
UN	5118	.	NC_000913	4590402	4590403
UN	5119	.	NC_000913	4590409	4590413
UN	5120	.	NC_000913	4590420	4590422
UN	5121	.	NC_000913	4590424	4591053
UN	5122	.	NC_000913	4591076	4591076
UN	5123	.	NC_000913	4591092	4591092
UN	5124	.	NC_000913	4591185	4591185
UN	5125	.	NC_000913	4591187	4591190
UN	5126	.	NC_000913	4591193	4591194
UN	5127	.	NC_000913	4591197	4591199
UN	5128	.	NC_000913	4591201	4591201
UN	5129	.	NC_000913	4591203	4591203
UN	5130	.	NC_000913	4591205	4591205
UN	5131	.	NC_000913	4591208	4591210
UN	5132	.	NC_000913	4591213	4591223
UN	5133	.	NC_000913	4591225	4591228
UN	5134	.	NC_000913	4591230	4591232
UN	5135	.	NC_000913	4591234	4591236
UN	5136	.	NC_000913	4591239	4591239
UN	5137	.	NC_000913	4591241	4591242
UN	5138	.	NC_000913	4591247	4591626
UN	5139	.	NC_000913	4591628	4591628
UN	5140	.	NC_000913	4591637	4591637
UN	5141	.	NC_000913	4591657	4591657
UN	5142	.	NC_000913	4591674	4591674
UN	5143	.	NC_000913	4591677	4591677
UN	5144	.	NC_000913	4603139	4603139
UN	5145	.	NC_000913	4603175	4603175
UN	5146	.	NC_000913	4604322	4604322
UN	5147	.	NC_000913	4604344	4604344
UN	5148	.	NC_000913	4604366	4604367
UN	5149	.	NC_000913	4604370	4604370
UN	5150	.	NC_000913	4620828	4620870
UN	5151	.	NC_000913	4621655	4621655
UN	5152	.	NC_000913	4621659	4623138
UN	5153	.	NC_000913	4623140	4623146
UN	5154	.	NC_000913	4623155	4623155
UN	5155	.	NC_000913	4623158	4623158
UN	5156	.	NC_000913	4623188	4623188
UN	5157	.	NC_000913	4623203	4623203