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PEC Original Annotations
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Essentiality
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Class
|
non-essential
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|
References (PMID)
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Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
ycaN
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ycaN
Search strains by all related name:
ycaN b0900 ECK0891 JW0883
|
General information (Go to Linear View: )
|
|
Gene Name
|
ycaN
|
|
Alternative name
|
b0900,ECK0891,JW0883
|
|
Location, Length
|
949,082 - 949,990
(
-
)
;
20.43
min
;
909
(bp) ,
302
(aa)
|
|
Product
|
predicted DNA-binding transcriptional regulator
|
|
Note
|
ECK0891:JW0883:b0900
|
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Function
|
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PID
|
4062476
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YCAN_ECOLI
(
P75836
)
|
|
- Protein name
|
RecName: Full=Uncharacterized HTH-type transcriptional regulator ycaN;
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- Synonyms
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- Gene name
|
Name=ycaN; OrderedLocusNames=b0900, JW0883;
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Homology Analysis
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BLAST
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Bacteria
|
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GTOP
|
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|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
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BLAST
|
predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MRMNMSDFAT FFAVARNQSF RAAGDELGLS SSAISHSIKT LEQRLKIRLF NRTTRSVSLT EAGSNLYERL
0071 RPAFDEIQIM LDEMNDFRLT PTGTLKINAA RVAARIFLMS LLVGFTREYP DIKVELTTDD SLVDIVQQGF
0141 DAGVRLSCIV EKDMISVAIG PPVKLCVAAT PEYFARYGKP RHPHDLLNHQ CVVFRYPSGK PFHWQFAKEL
0211 EIAVAGNIIL DDVDAELEAV LMGAGIGYLL YEQIKEYLDT GRLECVLEDW STERPGFQIY YPNRQYMSCG
0281 LRAFLDYVKT GQICQSQRHR PQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 taattttacc tccacgttaa gttctggagc
-070 gcactttacg caggcggcat aatcctgtaa acgtgatgat tcaggatgag ttaatgaagg attttcacta
0001 atgcggatga atatgtctga ctttgccact ttctttgccg tggcccgtaa tcaaagcttt cgtgcagcgg
0071 gcgatgagtt aggcttatcc tcgtccgcca ttagccatag tattaaaaca ctggaacaac gtcttaaaat
0141 tcgcttattc aatcggacaa cccgaagcgt atcgttaacg gaagcgggtt ctaatctcta tgaacgattg
0211 cgcccagctt tcgacgaaat tcagatcatg ttagatgaga tgaatgattt tcgtctgaca ccgacaggaa
0281 cgctcaaaat caatgccgcc cgggtagctg cacgtatatt tttaatgtct ttactggttg gtttcacacg
0351 tgaatatcct gatattaaag tcgagctcac aactgacgac tctcttgtcg atatcgtcca acagggcttt
0421 gacgctggcg ttcgacttag ttgcatcgtc gaaaaagata tgatcagcgt ggcgatcggc ccgccagtga
0491 aattatgtgt agcagcaacg ccagagtact ttgcaagata tggcaaaccc cgccatcctc atgatctgct
0561 taatcatcaa tgtgttgttt ttcgttatcc cagcggcaaa cctttccact ggcaatttgc aaaggagctg
0631 gaaattgctg tcgcaggaaa tatcattctg gatgatgttg atgctgaact ggaggccgtt ttgatgggtg
0701 ctggtatcgg gtatctgctc tatgaacaga tcaaggagta ccttgatact ggtcgtttag aatgtgtact
0771 ggaagactgg agcacagagc gtccaggctt ccagatctat tatccaaacc gccagtatat gtcctgcggc
0841 ttgcgcgcat ttctcgatta tgtaaaaacg ggtcagatct gccagagtca gcgtcaccga ccacaataat
0911 tatttactat tcgctttacg cgccagcagc gggaatatca gtcctaatcc taccagcaca aacggcgttg
0981 caacattcag cgccaactgg aaggtccac
|
