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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
ybbS
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Related strains
|
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Strains Search
|
Search strains by gene name:
ybbS
Search strains by all related name:
ybbS allS b0504 ECK0497 f308 f308c glxA1 JW0492
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General information (Go to Linear View: )
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Gene Name
|
ybbS
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Alternative name
|
allS,b0504,ECK0497,f308,f308c,glxA1,JW0492
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Location, Length
|
530,519 - 531,445
(
-
)
;
11.42
min
;
927
(bp) ,
308
(aa)
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Product
|
transcriptional activator of the allD operon
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Note
|
ECK0497:JW0492:b0504
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Function
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PID
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85674642
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
|
ALLS_ECOLI
(
P0ACR0
;
P77702; Q2MBS4
)
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- Protein name
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RecName: Full=HTH-type transcriptional activator allS;
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- Synonyms
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- Gene name
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Name=allS; Synonyms=glxA1, ybbS; OrderedLocusNames=b0504, JW0492;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
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PSI-BLAST
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SWISS-PROT
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BLAST
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RecName: Full=HTH-type transcriptional activator allS
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PSI-BLAST
|
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nr
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BLAST
|
DNA-binding transcriptional activator AllS [Escherichia coli O157:H7 EDL933]
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Pfam 27.0
(database updated :
2013-03
)
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Pfam
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| Sequences |
Amino acid
FASTA format
|
0001 MFDPETLRTF IAVAETGSFS KAAERLCKTT ATISYRIKLL EENTGVALFF RTTRSVTLTA AGEHLLSQAR
0071 DWLSWLESMP SELQQVNDGV ERQVNIVINN LLYNPQAVAQ LLAWLNERYP FTQFHISRQI YMGVWDSLLY
0141 EGFSLAIGVT GTEALANTFS LDPLGSVQWR FVMAADHPLA NVEEPLTEAQ LRRFPAVNIE DSARTLTKRV
0211 AWRLPGQKEI IVPDMETKIA AHLAGVGIGF LPKSLCQSMI DNQQLVSRVI PTMRPPSPLS LAWRKFGSGK
0281 AVEDIVTLFT QRRPEISGFL EIFGNPRS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tttagtccac aaattgaaca gggttatcat
-070 gtaaaaatac tgataaatca gaggataaga aaatcacgca acttgcggat ttaaaagggg atacctgaag
0001 atgttcgatc cagaaacctt gcggactttc attgcggttg ctgaaacagg aagtttttca aaagcggcag
0071 aacgattatg taaaaccacg gcgacgatca gttatcgcat taaacttctg gaagagaata ccggagtagc
0141 gctgtttttc cgtacgactc gcagcgtgac gttgacagcg gctggcgagc atctactttc ccaggccaga
0211 gactggctga gctggctgga aagtatgcca agcgagctgc aacaggtgaa tgatggcgtg gaacgccagg
0281 tgaatattgt catcaacaac ctgctctaca acccccaggc cgtcgcccag ttgctggcgt ggctgaatga
0351 gcgttacccc tttacccagt ttcacatctc ccgacaaatc tatatgggcg tctgggactc gctattgtac
0421 gaaggttttt cgctggctat cggcgtcacg ggaactgagg cgctggcaaa tacctttagt cttgatccct
0491 taggatcggt gcaatggcgc tttgtcatgg cggcggatca tccgctggcg aacgttgaag agccgctaac
0561 agaagcgcag ttgcggcgct ttccggcggt caatattgaa gacagcgccc gcaccttaac caaacgcgtc
0631 gcctggcgat tgccagggca aaaagagatt attgttcccg atatggaaac gaaaatcgcc gcccatctgg
0701 cgggcgttgg cattggtttt ttgccaaaat cgctttgcca gtcaatgatc gataatcaac aactggtcag
0771 ccgggtaatc ccaacgatgc gccctccttc gccattgagt ctggcatggc gcaaatttgg cagcggcaaa
0841 gcggtagaag atattgtgac cttgtttacc cagcgcaggc cggaaatcag cggattttta gaaattttcg
0911 gcaacccacg cagttaaaaa tcaagtttcc ttgcgcgttg gcgcgtaaaa tagcgcgcaa gctgatttga
0981 ggttcacttt taactatgca agagagacac acggaacagg actatcg
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