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PEC Original Annotations
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|
Essentiality
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Class
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non-essential
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References (PMID)
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Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
ygiP
|
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Related strains
|
|
Strains Search
|
Search strains by gene name:
ygiP
Search strains by all related name:
ygiP b3060 dan ECK3050 f310 JW3032 ttdR
|
General information (Go to Linear View: )
|
|
Gene Name
|
ygiP
|
|
Alternative name
|
b3060,dan,ECK3050,f310,JW3032,ttdR
|
|
Location, Length
|
3,203,980 - 3,204,912
(
-
)
;
68.96
min
;
933
(bp) ,
310
(aa)
|
|
Product
|
predicted DNA-binding transcriptional regulator
|
|
Note
|
ECK3050:JW3032:b3060
|
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Function
|
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PID
|
85675861
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
TTDR_ECOLI
(
P45463
;
Q2M9E5
)
|
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- Protein name
|
RecName: Full=HTH-type transcriptional activator ttdR;
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- Synonyms
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- Gene name
|
Name=ttdR; Synonyms=ygiP; OrderedLocusNames=b3060, JW3032;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
|
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PDB
|
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PSI-BLAST
|
|
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SWISS-PROT
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BLAST
|
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PSI-BLAST
|
|
|
nr
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BLAST
|
predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MLNSWPLAKD LQVLVEIVHS GSFSAAAATL GQTPAFVTKR IQILENTLAT TLLNRSARGV ALTESGQRCY
0071 EHALEILTQY QRLVDDVTQI KTRPEGMIRI GCSFGFGRSH IAPAITELMR NYPELQVHFE LFDRQIDLVQ
0141 DNIDLDIRIN DEIPDYYIAH LLTKNKRILC AAPEYLQKYP QPQSLQELSR HDCLVTKERD MTHGIWELGN
0211 GQEKKSVKVS GHLSSNSGEI VLQWALEGKG IMLRSEWDVL PFLESGKLVQ VLPEYAQSAN IWAVYREPLY
0281 RSMKLRVCVE FLAAWCQQRL GKPDEGYQVM
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gtgaatcaac gcgaaaataa gaatgaatat
-070 tgcgccagag cagggaatgg caatgttttg cgaaatacac tgcgcttatc acaactgcgg ataattaacg
0001 atgctgaata gctggccttt agccaaagac ttgcaggtac tggtagaaat cgttcacagc gggagtttta
0071 gcgccgcagc ggcgacgctt gggcagacgc ctgcatttgt caccaagcgg atccaaatcc ttgaaaatac
0141 gctggcaaca acgctgctga accgctccgc tcgcggcgtg gcgctgactg aaagtggcca acgttgttac
0211 gaacatgcgt tggaaatcct cacccaatat cagcgactgg tcgatgacgt cacgcaaatc aaaacgcgcc
0281 cggaggggat gattcgtatt ggttgcagtt ttggttttgg gcgcagccat attgcgccag ctattaccga
0351 actgatgcgc aattatcctg agttacaggt gcattttgaa ttgttcgatc ggcaaattga tttagtgcag
0421 gataatattg atctggatat tcgtattaat gacgaaattc ctgattatta tattgcgcat cttttgacaa
0491 aaaataaaag aatattatgc gcagcacctg agtatctgca aaaatatccg cagccacaat ccctacagga
0561 attaagtcgt catgactgtc tggtgaccaa agagcgcgat atgacccatg gaatatggga gttggggaac
0631 ggtcaggaga aaaaatcggt gaaggtaagc gggcatcttt cctccaatag cggcgagatt gtgctgcaat
0701 gggcgctgga gggcaaaggg attatgctgc gttccgagtg ggatgtgttg ccgtttctgg agagtggcaa
0771 actggtgcaa gtattgccag agtatgcaca aagcgccaat atctgggctg tttaccggga gccgctctat
0841 cgcagcatga aattacgtgt ctgcgtggaa tttctggcgg catggtgcca gcaacggctg ggcaagcccg
0911 atgaaggcta tcaggtcatg tagatccacc agaaatcact cgggatcctt ttcgcgcttt cttttgaatt
0981 tcgtccagat ttttgtctcc tgacgacgcc acagacgttg gatgttgtca tga
|
