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PEC Original Annotations
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Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yghB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yghB
Search strains by all related name:
yghB b3009 ECK3001 JW2976
|
General information (Go to Linear View: )
|
|
Gene Name
|
yghB
|
|
Alternative name
|
b3009,ECK3001,JW2976
|
|
Location, Length
|
3,152,219 - 3,152,878
(
+
)
;
67.84
min
;
660
(bp) ,
219
(aa)
|
|
Product
|
conserved inner membrane protein
|
|
Note
|
ECK3001:JW2976:b3009
|
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Function
|
|
|
PID
|
85675813
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YGHB_ECOLI
(
P0AA60
;
P33196; Q2M9J0
)
|
|
- Protein name
|
RecName: Full=Inner membrane protein yghB;
|
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- Synonyms
|
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- Gene name
|
Name=yghB; OrderedLocusNames=b3009, JW2976;
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Homology Analysis
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BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
hypothetical protein Z4362 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MAVIQDIIAA LWQHDFAALA DPHIVSVVYF VMFATLFLEN GLLPASFLPG DSLLILAGAL IAQGVMDFLP
0071 TIAILTAAAS LGCWLSYIQG RWLGNTKTVK GWLAQLPAKY HQRATCMFDR HGLLALLAGR FLAFVRTLLP
0141 TMAGISGLPN RRFQFFNWLS GLLWVSVVTS FGYALSMIPF VKRHEDQVMT FLMILPIALL TAGLLGTLFV
0211 VIKKKYCNA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GAAAAGTCTT AAATTGTTGC GTCCGGGATC
-070 AAGGCGTCCC GGACGATTCA GGAGTACAAT AGGCAGATAA AGGCTTAAAC GCTGTTCCAC AGGAAAGTCC
0001 atggctgtta ttcaagatat catcgctgcg ctctggcaac acgactttgc cgcgctggcg gatcctcata
0071 ttgttagcgt tgtttacttt gtcatgtttg ccacgctgtt tttagaaaac ggcctgctgc ccgcctcatt
0141 tttgccaggc gacagcttgt tgatactggc aggcgcattg attgcccagg gggttatgga ttttctgcct
0211 acgattgcga ttctgaccgc cgcagcaagt ctgggctgct ggctaagtta tattcagggg cgctggttag
0281 ggaataccaa aacggtgaaa ggctggctgg cacagcttcc tgctaaatat caccagcgcg ccacctgcat
0351 gtttgaccgc cacggtctgc tggcgctgct ggctggacgt tttcttgcat ttgtccgtac gctgctgcca
0421 accatggcgg gaatttccgg tctgccaaac cgccgcttcc agtttttcaa ctggttaagt ggattgctgt
0491 gggtcagcgt ggtaaccagt tttggctatg ccttaagtat gattccgttc gttaaacgcc atgaagatca
0561 ggtaatgacg ttcctgatga tcctgccaat tgccttgtta accgctggct tgttaggcac gctgtttgtg
0631 gtgattaaaa aaaaatactg taacgcctga CGATTTTCCC CGTTCCCGGT TGCTGTACCG GGAACGTATT
0701 TAATTCCCCT GCATCGCCCG CATTCTTGCC GCATCTTCCC CCGGCGTCAC ACCGAAGTAA
|
