|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
lysR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
lysR
Search strains by all related name:
lysR b2839 ECK2837 JW2807
|
General information (Go to Linear View: )
|
|
Gene Name
|
lysR
|
|
Alternative name
|
b2839,ECK2837,JW2807
|
|
Location, Length
|
2,977,677 - 2,978,612
(
+
)
;
64.09
min
;
936
(bp) ,
311
(aa)
|
|
Product
|
DNA-binding transcriptional dual regulator
|
|
Note
|
ECK2837:JW2807:b2839
|
|
Function
|
|
|
PID
|
85675655
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
LYSR_ECOLI
(
P03030
;
Q2M9Z8; Q46936
)
|
|
- Protein name
|
RecName: Full=Transcriptional activator protein lysR;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=lysR; OrderedLocusNames=b2839, JW2807;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MAAVNLRHIE IFHAVMTAGS LTEAAHLLHT SQPTVSRELA RFEKVIGLKL FERVRGRLHP TVQGLRLFEE
0071 VQRSWYGLDR IVSAAESLRE FRQGELSIAC LPVFSQSFLP QLLQPFLARY PDVSLNIVPQ ESPLLEEWLS
0141 AQRHDLGLTE TLHTPAGTER TELLSLDEVC VLPPGHPLAV KKVLTPDDFQ GENYISLSRT DSYRQLLDQL
0211 FTEHQVKRRM IVETHSAASV CAMVRAGVGI SVVNPLTALD YAASGLVVRR FSIAVPFTVS LIRPLHRPSS
0281 ALVQAFSGHL QAGLPKLVTS LDAILSSATT A
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTTTTATGAT TACGCCACAT CATAAAAAGA
-070 ATAAAAAATA TCGATTTATG TCGAGTCTAT GCAAAAATGA TATGGATTAC CGGATTGCGA GAGAGCGCTA
0001 atggccgccg ttaacttacg tcatattgaa atttttcatg cggtaatgac cgccggaagc ctgactgagg
0071 cggcacacct gctacacacc tcacagccaa ccgtcagccg cgaacttgcg cgctttgaga aggtgatcgg
0141 gctgaaattg tttgagcgcg tacgtgggcg attacatcct accgtgcaag gactgcgtct gtttgaagaa
0211 gtgcaacgat cctggtacgg actggatcgc attgtcagcg ccgcagaaag tctgcgcgag tttcgccagg
0281 gagaactgtc tattgcctgc ctgccggtct tttcgcaatc ttttttaccg cagctcctgc aaccctttct
0351 ggcacgttat cccgatgtca gcttaaatat cgtgccccag gaatcaccgc tacttgaaga gtggctctcg
0421 gcccagcgtc atgatttagg actcactgaa acgctccata cgcctgcggg aacagaacgt accgaattac
0491 tctctttaga tgaagtgtgt gtgttacctc cgggtcatcc gctggcggta aaaaaggtat taacgccgga
0561 tgattttcag ggtgagaact acatcagcct ttcccgtact gacagctatc gccagttgct ggatcagcta
0631 tttactgaac atcaggttaa acgacgcatg atcgtagaaa cccacagcgc cgcgtcagtc tgcgcaatgg
0701 tacgggcggg ggtaggtatt tcggtggtta acccgctcac cgcactagat tatgcggcaa gcggtttagt
0771 ggtgcggcgg ttcagtattg cggttccgtt caccgtcagc ctgatccgcc ccctgcaccg cccgtcatca
0841 gcgctggttc aggcgtttag tgggcattta caagcggggt taccgaaact ggtcacttct cttgacgcta
0911 ttttgtcgtc agctacgaca gcataaAAGC GACAGCATCC TCGGCATGGA TCGCCGCGGT ATCAAACACA
0981 GGCAAAACAC TGCGCTCTTC TGGCACCAGT AAACCAATTT CTGTGCAGCC AAAAAT
|
