|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
xapR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
xapR
Search strains by all related name:
xapR b2405 ECK2399 JW2396 pRndR yfeB
|
General information (Go to Linear View: )
|
|
Gene Name
|
xapR
|
|
Alternative name
|
b2405,ECK2399,JW2396,pRndR,yfeB
|
|
Location, Length
|
2,527,039 - 2,527,923
(
-
)
;
54.39
min
;
885
(bp) ,
294
(aa)
|
|
Product
|
DNA-binding transcriptional activator
|
|
Note
|
ECK2399:JW2396:b2405
|
|
Function
|
|
|
PID
|
1799815
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
XAPR_ECOLI
(
P23841
;
P76531
)
|
|
- Protein name
|
RecName: Full=HTH-type transcriptional regulator xapR; AltName: Full=Xanthosine operon regulatory protein;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=xapR; Synonyms=pndR, yfeB; OrderedLocusNames=b2405, JW2396;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MERVYRTDLK LLRYFLAVAE ELHFGRAAAR LNMSQPPLSI HIKELENQLG TQLFIRHSRS VVLTHAGKIL
0071 MEESRRLLVN ANNVLARIEQ IGRGEAGRIE LGVVGTAMWG RMRPVMRRFL RENPNVDVLF REKMPAMQMA
0141 LLERRELDAG IWRMATEPPT GFTSLRLHES AFLVAMPEEH HLSSFSTVPL EALRDEYFVT MPPVYTDWDF
0211 LQRVCQQVGF SPVVIREVNE PQTVLAMVSM GIGITLIADS YAQMNWPGVI FRPLKQRIPA DLYIVYETQQ
0281 VTPAMVKLLA ALTQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 atattatcca ttgtgtttat gtatgtcgga
-070 tatctggtgg tgaaatactt tatgccatga taatttaata cgatgtattt attatatgga gcacttaatt
0001 atggaacgcg tatacagaac agatcttaag ttgctccgtt attttcttgc cgtagcggaa gagttgcatt
0071 ttggccgcgc agcagcgcgt ttaaatatgt ctcagcctcc gctcagcatt catattaaag agctggaaaa
0141 tcaactcggc acgcagcttt ttattcgcca ttcgcgcagc gtcgtactga cacacgcggg caaaatcttg
0211 atggaagaat cgcgtcgatt gctggtgaat gctaataatg tattggctcg gattgaacaa ataggtcggg
0281 gagaagcagg gcggattgaa ctcggcgtag tgggaacggc aatgtgggga cggatgcgcc cggttatgcg
0351 gcgattcctc agggaaaatc ctaacgttga cgttcttttt cgcgaaaaga tgcccgcgat gcaaatggcc
0421 ttgctggaac gccgcgaact tgatgccggg atctggcgaa tggcgacaga accaccgact ggttttacca
0491 gcttacggtt gcatgaatcg gcgtttctgg tggcgatgcc tgaagagcat catctctcat cattttccac
0561 cgtcccgctg gaagcgctac gtgacgagta ttttgttaca atgccgcccg tttacactga ctgggatttt
0631 ttgcagcgag tttgccagca ggtgggattt tcaccggttg ttattcgcga agttaatgaa ccgcaaacgg
0701 tactcgctat ggtcagtatg ggcattggta tcacattgat agcggacagc tacgcacaaa tgaactggcc
0771 aggtgtcatt ttccgtccgc tcaaacagcg catccctgca gatttatata ttgtttatga aacacagcag
0841 gtgacgcccg cgatggttaa gctgttggct gcattgacac agtaggtgag gagacaggaa ttgccggaaa
0911 tagtagtctg ctaagtgaag cgcatcaggc aatttcgcaa atcgcagata gcaaaaaagc gcctttaggg
0981 cgctt
|
