|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yohD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yohD
Search strains by all related name:
yohD b2136 ECK2129 JW2124
|
General information (Go to Linear View: )
|
|
Gene Name
|
yohD
|
|
Alternative name
|
b2136,ECK2129,JW2124
|
|
Location, Length
|
2,229,135 - 2,229,713
(
+
)
;
47.98
min
;
579
(bp) ,
192
(aa)
|
|
Product
|
conserved inner membrane protein
|
|
Note
|
ECK2129:JW2124:b2136
|
|
Function
|
|
|
PID
|
85675250
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YOHD_ECOLI
(
P33366
;
P76436; Q2MAU3
)
|
|
- Protein name
|
RecName: Full=Inner membrane protein yohD;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yohD; OrderedLocusNames=b2136, JW2124;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
RecName: Full=Inner membrane protein yohD
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
conserved inner membrane protein [Escherichia coli str. K-12 substr. W3110]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MDLNTLISQY GYAALVIGSL AEGETVTLLG GVAAHQGLLK FPLVVLSVAL GGMIGDQVLY LCGRRFGGKL
0071 LRRFSKHQDK IERAQKLIQR HPYLFVIGTR FMYGFRVIGP TLIGASQLPP KIFLPLNILG AFAWALIFTT
0141 IGYAGGQVIA PWLHNLDQHL KHWVWLILVV VLVVGVRWWL KRRGKKKPDH QA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCGCCCATGT AATTTTCACT GTCTGATGAA
-070 CGTCCTTTTT CAGCGTGAAT GATTCACAGG GTGTATGCTT ACTGGCAACC AAAGGGAGAC AGACTGGCCT
0001 atggatctca atacacttat ctcacaatat ggttatgccg cgctggtgat cggtagcctg gcggaaggtg
0071 aaaccgtgac tttgctggga ggcgttgcgg cgcatcaggg gctattaaag ttcccgctgg tggtactttc
0141 tgtggcgctt ggcggcatga ttggcgacca ggtgctctat ctgtgcgggc ggcggtttgg cggcaagctg
0211 ttacgccgtt tctcgaaaca tcaggataaa attgagcggg cgcagaaact tatccaacgc catccgtatc
0281 tgtttgtcat tggtacgcgc tttatgtatg gctttcgggt gattggcccg acgctgattg gtgccagcca
0351 gctgccgccg aaaatctttc tgccgctgaa tattctcggc gcatttgcct gggcgttgat ttttaccact
0421 attggttacg ctggtggtca ggtgattgcg ccgtggttgc acaatctcga ccagcatttg aagcactggg
0491 tctggttgat tctggtcgtg gttctggtgg tgggcgtgcg ctggtggctg aaacgacgcg ggaagaaaaa
0561 gccggatcat caggcgtaaA ACCATTGCCC TGGATAAGGC GTTCGCGCCG CATCCGACAT CCGGAGTACC
0631 ATGCCTGATA CGACGCTTGT GCGTCTTTTC ATGCCGACCA AAATATTAC
|
