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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
ydcI
|
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Related strains
|
|
Strains Search
|
Search strains by gene name:
ydcI
Search strains by all related name:
ydcI b1422 ECK1416 JW5226
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General information (Go to Linear View: )
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Gene Name
|
ydcI
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|
Alternative name
|
b1422,ECK1416,JW5226
|
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Location, Length
|
1,495,862 - 1,496,785
(
-
)
;
32.19
min
;
924
(bp) ,
307
(aa)
|
|
Product
|
predicted DNA-binding transcriptional regulator
|
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Note
|
ECK1416:JW5226:b1422
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Function
|
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PID
|
85674955
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YDCI_ECOLI
(
P77171
)
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- Protein name
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RecName: Full=Uncharacterized HTH-type transcriptional regulator ydcI;
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- Synonyms
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- Gene name
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Name=ydcI; OrderedLocusNames=b1422, JW5226;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
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PSI-BLAST
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|
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SWISS-PROT
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BLAST
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PSI-BLAST
|
|
|
nr
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BLAST
|
predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110]
|
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Pfam 27.0
(database updated :
2013-03
)
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Pfam
|
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| Sequences |
Amino acid
FASTA format
|
0001 MEKNSLFSQR IRLRHLHTFV AVAQQGTLGR AAETLNLSQP ALSKTLNELE QLTGARLFER GRQGAQLTLP
0071 GEQFLTHAVR VLDAINTAGR SLHRKEGLNN DVVRVGALPT AALGILPSVI GQFHQQQKET TLQVATMSNP
0141 MILAGLKTGE IDIGIGRMSD PELMTGLNYE LLFLESLKLV VRPNHPLLQE NVTLSRVLEW PVVVSPEGTA
0211 PRQHSDALVQ SQGCKIPSGC IETLSASLSR QLTVEYDYVW FVPSGAVKDD LRHATLVALP VPGHGAGEPI
0281 GILTRVDATF SSGCQLMINA IRKSMPF
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 taacataatt gctttaattg ttaataatat
-070 tttgcaatca agttatcata atcaaacaac ttcacttgtc agcgacaccg cttcgttttt aacatcgctt
0001 atggaaaaaa atagtctgtt tagtcagcgc atccgtttgc gccaccttca tacattcgta gctgtcgcac
0071 aacaaggaac tttggggcgc gcggctgaaa cccttaattt gagtcaacct gcgctctcta agacattgaa
0141 tgaactggag cagctgactg gcgctcgctt gtttgagcgt ggtcgtcagg gggcgcaact taccttaccc
0211 ggcgaacaat ttttaacgca tgcagtcaga gttcttgacg ccatcaacac tgccggacgg tcgcttcatc
0281 gtaaagaagg tcttaataat gatgtcgtca gggttggtgc actacctact gcggcactgg ggatattacc
0351 ttcggttata ggtcagtttc atcagcaaca aaaagagacg accttgcaag ttgcgacaat gagtaaccct
0421 atgattctgg cgggtttaaa aaccggggaa atcgatatcg gcattggtcg gatgtcagat cctgaactga
0491 tgaccgggct taattacgaa ctgctgtttc ttgaatcgtt gaagctggtt gtccgcccta atcacccgct
0561 acttcaggag aacgtaacgc taagccgggt gctggaatgg ccggtcgttg tatcaccaga aggcactgcg
0631 ccacgccagc attcagatgc attagtgcag agccagggct gtaaaattcc ttcgggttgt atcgaaacgc
0701 tgtctgcttc gctatctcgt caacttacgg ttgaatacga ttacgtgtgg tttgtccctt ctggcgctgt
0771 aaaagacgac ctgcgtcatg ccacgctggt ggccctgcct gttccgggac atggtgcagg cgaaccgatt
0841 ggaatactga cccgcgtaga tgcgacgttc tcttctggtt gccagttgat gattaacgct attcgaaaat
0911 caatgccgtt ctgaaaggtg aagggatctg tcgatccctc cttgaacatt ttcacaccgt agcgaaacta
0981 actggttcac ccgctccgcg aggttctgcc gacacagaat gttt
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