MG1655
W3110
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Top Genes Deletions Circular Linear Motif SequenceCutter Download Strains
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Total Hit : 166 | First   Previous  1-50    51-100   101-150   151-166   Next   Last
Symbol
RadC yeeS, yfjY, yicR, ykfG 
4   
 PF04002.10  Kerrison ND, Finn RD, Iyer LM, Zhang D, Aravind L  RadC-like JAB domain 
Radical_SAM aslB, bioB, hemN, lipA, miaB, moaA, pflA, pflC, thiH, ybiY, ydeM, yfgB, ygcF, yggW, ygiQ, yhcC, yjeK, yjjW, yliG 
19   
 PF04055.16  Bateman A  Radical SAM superfamily 
Radical_SAM_N ygiQ 
1   
 PF08497.5  Wuster A  Radical SAM N-terminal 
RapA_C hepA 
1   
 PF12137.3  Assefa S, Bateman A, Coggill P  RNA polymerase recycling family C-term.. 
RBFA rbfA 
1   
 PF02033.13  Mian N, Bateman A  Ribosome-binding factor A 
RbsD_FucU fucU, rbsD 
2   
 PF05025.8  Moxon SJ, Bateman A  RbsD / FucU transport protein family 
RdgC rdgC 
1   
 PF04381.7  Kerrison ND  Putative exonuclease, RdgC 
RecA recA 
1   
 PF00154.16  Sonnhammer ELL  recA bacterial DNA recombination protein 
Recombinase ybcK 
1   
 PF07508.8  Studholme D  Recombinase 
RecO_C recO 
1   
 PF02565.10  Mian N, Bateman A  Recombination protein O C terminal 
RecO_N recO 
1   
 PF11967.3  Mian N, Bateman A  Recombination protein O N terminal 
RecR recR 
1   
 PF02132.10  Mian N, Bateman A  RecR protein 
RecT recT 
1   
 PF03837.9  Aravind L  RecT family 
RecX recX 
1   
 PF02631.11  Mian N, Bateman A  RecX family 
Redoxin ccmG, tpx 
2   
 PF08534.5  Mistry J  Redoxin 
Reductase_C hcaD 
1   
 PF14759.1  Eberhardt R  Reductase C-terminal 
RelA_SpoT relA, spoT 
2   
 PF04607.12  Kerrison ND  Region found in RelA / SpoT proteins 
RelB dinJ, relB 
2   
 PF04221.7  Mifsud W  RelB antitoxin 
ResIII hsdR, uvrB, yejH, yoaA 
4   
 PF04851.10  Finn RD, Mifsud W  Type III restriction enzyme, res subunit 
Resolvase pin, pinQ, pinR, yagL, ybcK 
5   
 PF00239.16  Finn RD, Griffiths-Jones SR, Bateman A  Resolvase, N terminal domain 
Response_reg arcA, arcB, atoC, baeR, barA, basR, cheB, cheY, citB, cpxR, creB, cusR, dcuR, evgA, evgS, fimZ, glnG, kdpE, narL, narP, ompR, phoB, phoP, qseB, rcsB, rssB, rstA, torR, torS, uhpA, uvrY, yedW, yehT, yfhA, ypdB, zraR 
36   
 PF00072.19  Sonnhammer ELL, Griffiths-Jones SR, Finn R, Fenech M  Response regulator receiver domain 
RF-1 prfA, prfB, prfH, yaeJ 
4   
 PF00472.15  Bateman A, Finn RD  RF-1 domain 
RhaA rhaA 
1   
 PF06134.6  Moxon SJ  L-rhamnose isomerase (RhaA) 
RhaT rhaT 
1   
 PF06379.7  Moxon SJ  L-rhamnose-proton symport protein (RhaT) 
RHH_1 nikR, ybfE, yiiE 
3   
 PF01402.16  Bateman A  Ribbon-helix-helix protein, copG family 
Rhodanese glpE, pspE, sseA, ybbB, yceA, ygaP, yibN, ynjE 
10   
 PF00581.15  Bateman A  Rhodanese-like domain 
Rhomboid glpG 
1   
 PF01694.17  Sohrmann M, Bateman A  Rhomboid family 
Rho_N rho 
1   
 PF07498.7  Finn, RD  Rho termination factor, N-terminal dom.. 
Rho_RNA_bind rho 
1   
 PF07497.7  Finn, RD  Rho termination factor, RNA-binding do.. 
RHS rhsA, rhsB, rhsC, rhsD, rhsE, ybfO, yibJ, ylbH 
8   
 PF03527.9  Griffiths-Jones SR  RHS protein 
RHS_repeat rhsA, rhsB, rhsC, rhsD, rhsE, ybfO 
34   
 PF05593.9  Yeats C  RHS Repeat 
RibD_C ribD 
1   
 PF01872.12  Enright A, Ouzounis C, Bateman A  RibD C-terminal domain 
Ribonuclease_P rnpA 
1   
 PF00825.13  Bateman A  Ribonuclease P 
Ribonuclease_T2 rna 
1   
 PF00445.13  Finn RD  Ribonuclease T2 family 
Ribonucleas_3_3 rnc 
1   
 PF14622.1  Wood V, Coggill P  Ribonuclease-III-like 
Ribonuc_L-PSP tdcF, ycdK, yjgF, yjgH, yoaB 
5   
 PF01042.16  Bateman A, Finn RD, Kerrison ND  Endoribonuclease L-PSP 
Ribonuc_red_lgC nrdA, nrdE 
2   
 PF02867.10  Finn RD, Griffiths-Jones SR  Ribonucleotide reductase, barrel domain 
Ribonuc_red_lgN nrdA, nrdE 
2   
 PF00317.16  Finn RD, Griffiths-Jones SR  Ribonucleotide reductase, all-alpha do.. 
Ribonuc_red_sm nrdB, nrdF 
3   
 PF00268.16  Finn RD, Griffiths-Jones SR  Ribonucleotide reductase, small chain 
Ribosomal_L1 rplA 
1   
 PF00687.16  Bateman A  Ribosomal protein L1p/L10e family 
Ribosomal_L10 rplJ 
1   
 PF00466.15  Finn RD  Ribosomal protein L10 
Ribosomal_L11 rplK 
1   
 PF00298.14  Finn RD, Griffiths-Jones SR  Ribosomal protein L11, RNA binding dom.. 
Ribosomal_L11_N rplK 
1   
 PF03946.9  Finn RD, Griffiths-Jones SR  Ribosomal protein L11, N-terminal domain 
Ribosomal_L12 rplL 
1   
 PF00542.14  Bateman A  Ribosomal protein L7/L12 C-terminal do.. 
Ribosomal_L13 rplM 
1   
 PF00572.13  Bateman A  Ribosomal protein L13 
Ribosomal_L14 rplN 
1   
 PF00238.14  Finn RD  Ribosomal protein L14p/L23e 
Ribosomal_L16 rplP 
1   
 PF00252.13  Finn RD, Bateman A  Ribosomal protein L16p/L10e 
Ribosomal_L17 rplQ 
1   
 PF01196.14  Finn RD, Bateman A  Ribosomal protein L17 
Ribosomal_L18e rplO 
1   
 PF00828.14  Bateman A, Finn RD  Ribosomal protein L18e/L15 
Ribosomal_L18p rplR 
1   
 PF00861.17  Bateman A  Ribosomal L18p/L5e family 
Total Hit : 166 | First   Previous  1-50    51-100   101-150   151-166   Next   Last