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PEC Original Annotations
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Essentiality
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Class
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non-essential
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|
References (PMID)
|
Proc Natl Acad Sci U S A. 1990;87(1):360-3.
Mutations in the bglY gene increase the frequency of spontaneous deletions in Escherichia coli K-12.
Lejeune P, Danchin A.
(
2404280
)
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ybhD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ybhD
Search strains by all related name:
ybhD b0768 ECK0757 JW5896
|
General information (Go to Linear View: )
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|
Gene Name
|
ybhD
|
|
Alternative name
|
b0768,ECK0757,JW5896
|
|
Location, Length
|
800,044 - 801,060
(
-
)
;
17.22
min
;
1017
(bp) ,
338
(aa)
|
|
Product
|
predicted DNA-binding transcriptional regulator
|
|
Note
|
ECK0757:JW5896:b0768
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Function
|
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PID
|
4062335
|
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YBHD_ECOLI
(
P52696
;
P75761
)
|
|
- Protein name
|
RecName: Full=Uncharacterized HTH-type transcriptional regulator ybhD;
|
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- Synonyms
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|
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- Gene name
|
Name=ybhD; OrderedLocusNames=b0768, JW5896;
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Homology Analysis
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BLAST
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Bacteria
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|
GTOP
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PDB
|
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PSI-BLAST
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SWISS-PROT
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BLAST
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PSI-BLAST
|
|
|
nr
|
|
BLAST
|
predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MQLKFLTASH PKSSLPFSGV IMKHELSSMK AFVILAESSS FNNAAKLLNI TQPALTRRIK KMEEDLHVQL
0071 FERTTRKVTL TKAGKRLLPE ARELIKKFDE TLFNIRDMNA YHRGMVTLAC IPTAVFYFLP LAIGKFNELY
0141 PNIKVRILEQ GTNNCMESVL CNESDFGINM NNVTNSSIDF TPLVNEPFVL ACRRDHPLAK KQLVEWQELV
0211 GYKMIGVRSS SGNRLLIEQQ LADKPWKLDW FYEVRHLSTS LGLVEAGLGI SALPGLAMPH APYSSIIGIP
0281 LVEPVIRRTL GIIRRKDAVL SPAAERFFAL LINLWTDDKD NLWTNIVERQ RHALQEIG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aacataactt attgcgatat ggttacatta
-070 agggcaaagc atctctaatg actttagctc aacgattaat aacatttttt cattaattta agttggctaa
0001 atgcagttaa aatttttaac ggccagccac ccaaaatcgt cgcttccatt ttccggagta ataatgaagc
0071 atgaattatc aagtatgaag gcatttgtca tactggcaga gtccagttcg tttaacaatg ccgctaaatt
0141 actcaatatt acgcaacctg cattaacgcg aagaataaaa aagatggagg aagatttaca tgttcaacta
0211 tttgagcgta caactcgcaa ggttacgtta acaaaagcag gaaaaaggtt gctcccggag gcgcgggaat
0281 taataaagaa attcgatgaa acgcttttta atattcgtga tatgaatgct tatcatcgtg gtatggtgac
0351 gttagcgtgt attccgaccg cagtatttta ttttttaccg ctggcaatcg gtaaatttaa tgagctgtat
0421 cccaatatta aagtgcggat tctggaacaa ggcacgaata attgcatgga atcggtgctg tgtaacgaat
0491 cagactttgg cataaacatg aacaacgtca caaattcatc cattgatttt accccactgg tcaacgagcc
0561 gttcgtgctg gcctgtcggc gtgaccatcc attggccaaa aagcagcttg tagaatggca ggagttagtg
0631 ggttacaaaa tgattggcgt acgctcctcc agcggcaacc gactgttgat agaacaacag ctggccgaca
0701 agccctggaa gctggactgg ttttacgaag tgcgtcatct ttcgacgtca ttaggactgg tggaggcggg
0771 actggggatt tcggcgcttc ctggcctggc aatgcctcat gcgccctatt cttcgattat tggtatccca
0841 ttggtggaac ccgttatacg tcgaacattg ggaataattc gccgtaaaga tgccgtactt tctccagcag
0911 cagaacgctt ttttgccttg ctgattaatt tatggactga cgataaagac aatttgtgga ccaatatcgt
0981 cgaacgccag agacacgcgt tacaggagat aggttaatac accggcgcag gagagactgc gccgggtaaa
1051 tcagcggtta gtgtgcgtta accaccaccc acattggtcc ctgcccgacc gcatagcggc ctttttc
|
